AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1093260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093260 MtrunA17_Chr7g0226961 97.845 232 4 1 2 233 4 234 2.80e-166 460
Msa1093260 MtrunA17_Chr7g0226951 75.758 198 16 3 99 271 11 201 2.29e-102 296
Msa1093260 MtrunA17_Chr3g0109261 91.111 45 4 0 121 165 1 45 1.89e-22 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093260 AT3G27460.1 73.606 269 71 0 3 271 2 270 4.66e-150 420
Msa1093260 AT3G27460.4 73.063 271 71 1 3 271 2 272 4.33e-148 415
Msa1093260 AT3G27460.2 73.234 269 71 1 3 271 2 269 1.78e-147 414
Msa1093260 AT5G40550.2 76.580 269 62 1 4 271 2 270 1.14e-145 409
Msa1093260 AT5G40550.1 75.735 272 62 1 4 271 2 273 2.12e-145 409
Msa1093260 AT3G27460.3 71.861 231 65 0 3 233 2 232 4.75e-123 351
Msa1093260 AT3G27460.5 71.245 233 65 1 3 233 2 234 3.88e-121 346
Msa1093260 AT5G40550.4 75.325 231 56 1 4 233 2 232 6.86e-119 342
Msa1093260 AT5G40550.3 74.359 234 56 1 4 233 2 235 1.45e-118 342

Find 87 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAGACATTGTTTCAATTT+TGG 0.125158 7_3:-12930167 Msa1093260:CDS
CTTGATGGATCATTACTCTT+AGG 0.196524 7_3:+12924252 None:intergenic
AAACTAAGCATTTATTTAAT+AGG 0.221134 7_3:+12930417 None:intergenic
TCCTATTTAGTTTCCGATTT+CGG 0.264917 7_3:-12930262 Msa1093260:five_prime_UTR
GAAGTGGAAATCTATCAATT+TGG 0.267392 7_3:-12923012 Msa1093260:three_prime_UTR
TTTGGAGAATTCGAAGGAAT+TGG 0.318340 7_3:-12930149 Msa1093260:CDS
TCCGAAATCGGAAACTAAAT+AGG 0.320639 7_3:+12930261 None:intergenic
AATATAATCACCTTAATGTT+AGG 0.325530 7_3:+12922957 None:intergenic
GATAAACTTTCAAAATGTTT+AGG 0.327044 7_3:+12923066 None:intergenic
TGAGGCTTGTGCCAGTCTTA+AGG 0.332756 7_3:-12926666 Msa1093260:CDS
CCAGGCTTCTCAACCACTTC+AGG 0.334812 7_3:+12927693 None:intergenic
TTTCAAAATGTTTAGGCAAT+GGG 0.339284 7_3:+12923073 None:intergenic
TGTTGTTTGGTTGTGTAATA+TGG 0.342734 7_3:-12923247 Msa1093260:three_prime_UTR
CGAAGGAATTGGATCGGTTA+AGG 0.350142 7_3:-12930138 Msa1093260:CDS
TTGTAGTTTAATTAAATGTT+GGG 0.353212 7_3:-12923156 Msa1093260:three_prime_UTR
TACGAGTTGGCCTAACATTA+AGG 0.356939 7_3:-12922967 Msa1093260:three_prime_UTR
AATTAGATCAATAAGAGAAT+TGG 0.363116 7_3:+12923044 None:intergenic
GAGGCTTGTGCCAGTCTTAA+GGG 0.363424 7_3:-12926665 Msa1093260:CDS
ATTTATTGACGATGTCCTTC+TGG 0.363666 7_3:+12923317 None:intergenic
TTATAAAGTGCAGTAGTTCC+TGG 0.375275 7_3:+12924186 None:intergenic
ATTGTAGTTTAATTAAATGT+TGG 0.380433 7_3:-12923157 Msa1093260:three_prime_UTR
CGTGGTTGTCCTTGCGGTCC+CGG 0.396887 7_3:+12927296 None:intergenic
GGAAAATCTTGGGCACTTGA+TGG 0.409005 7_3:+12924237 None:intergenic
GATGATAGATATCTAACGTT+TGG 0.417036 7_3:-12923133 Msa1093260:three_prime_UTR
TATAAAGCAACAGTTGTTCA+AGG 0.419272 7_3:-12924168 Msa1093260:CDS
TGCCAGTCTTAAGGGTGAAC+AGG 0.422074 7_3:-12926657 Msa1093260:CDS
AACTAGCTTGTATTGTTGTT+TGG 0.422739 7_3:-12923260 Msa1093260:three_prime_UTR
TTTGCTAGTGAGTTATCTCC+AGG 0.426706 7_3:+12927675 None:intergenic
AAACAGAGTCAGACATTTCA+AGG 0.430334 7_3:-12926715 Msa1093260:CDS
TTGATGGATCATTACTCTTA+GGG 0.432926 7_3:+12924253 None:intergenic
TCCAAAATTGAAACAATGTC+TGG 0.435691 7_3:+12930166 None:intergenic
ACTTGATGTCTTGCTTCCTC+CGG 0.436701 7_3:-12927315 Msa1093260:CDS
CTTTCAAAATGTTTAGGCAA+TGG 0.438464 7_3:+12923072 None:intergenic
CAGAAGGCAATGAGCAGAAA+AGG 0.439103 7_3:-12926748 Msa1093260:CDS
GGACAACCACGAAGAAGATT+AGG 0.443668 7_3:-12927284 Msa1093260:intron
TCTAATTATTGTAATTGAAG+TGG 0.444283 7_3:-12923028 Msa1093260:three_prime_UTR
CATGTCTTGGCAGTTTATCC+AGG 0.450728 7_3:-12924204 Msa1093260:CDS
GTGTGTTTATTAAGCTATCA+AGG 0.457088 7_3:-12923219 Msa1093260:three_prime_UTR
CTTGATGTCTTGCTTCCTCC+GGG 0.463139 7_3:-12927314 Msa1093260:CDS
CCTGAAGTGGTTGAGAAGCC+TGG 0.484381 7_3:-12927693 Msa1093260:CDS
GACAAACCTAATCTTCTTCG+TGG 0.485641 7_3:+12927278 None:intergenic
TGGAAGGGCACTGTCCTTTG+AGG 0.491583 7_3:+12923356 None:intergenic
GGATCGGTTAAGGAAAGATC+AGG 0.498960 7_3:-12930128 Msa1093260:CDS
TCCACCTGGAAAACATGTCT+TGG 0.499699 7_3:-12924217 Msa1093260:CDS
CTTCTTCGTGGTTGTCCTTG+CGG 0.502722 7_3:+12927290 None:intergenic
CTGCTGTCTTCATCATCACC+AGG 0.505637 7_3:+12925075 None:intergenic
CAGTTGTTCAAGGCCATCGC+AGG 0.506081 7_3:-12924158 Msa1093260:CDS
TCAAGTTGATTTCGCATACT+CGG 0.508361 7_3:+12926686 None:intergenic
ATGTTTAGGCAATGGGGATG+TGG 0.519665 7_3:+12923080 None:intergenic
CATTCATACGTGCATAAAGT+TGG 0.520208 7_3:+12923182 None:intergenic
CACGCCGCGTAATGCTGATA+AGG 0.520440 7_3:-12926233 Msa1093260:CDS
CAGAGGAACCACTGTGTGGA+AGG 0.522387 7_3:+12923340 None:intergenic
TGACGATGTCCTTCTGGCAG+AGG 0.532556 7_3:+12923323 None:intergenic
AGACAGTACAAGCTTCCAAT+GGG 0.537138 7_3:-12924291 Msa1093260:CDS
TTGCTTCCTCCGGGACCGCA+AGG 0.538335 7_3:-12927305 Msa1093260:CDS
TTGATGATGACGAAGAAGAC+GGG 0.542193 7_3:-12923385 Msa1093260:CDS
GTTCTGTATAACAACTGTTG+TGG 0.545754 7_3:-12923111 Msa1093260:three_prime_UTR
CAGATTTGAAGTACTTGATG+AGG 0.545767 7_3:-12925100 Msa1093260:CDS
TTTCGATGTAGCTCCTGAAG+TGG 0.549465 7_3:-12927706 Msa1093260:intron
TGTAAAATGCACGTACGAGT+TGG 0.566771 7_3:-12922980 Msa1093260:three_prime_UTR
TGTAGTTTAATTAAATGTTG+GGG 0.571957 7_3:-12923155 Msa1093260:three_prime_UTR
TTTGATGATGACGAAGAAGA+CGG 0.576368 7_3:-12923386 Msa1093260:CDS
TGCCTGTTCACCCTTAAGAC+TGG 0.577650 7_3:+12926655 None:intergenic
TTCAAAATGTTTAGGCAATG+GGG 0.580580 7_3:+12923074 None:intergenic
AAGTTGGCTTATCAACATAG+TGG 0.582888 7_3:+12927334 None:intergenic
AAAGGAATGATATGTCCCAT+TGG 0.585834 7_3:+12924276 None:intergenic
TGATTGGAACAGTTATGTGT+TGG 0.589692 7_3:-12923411 Msa1093260:intron
CAGACAGTACAAGCTTCCAA+TGG 0.596515 7_3:-12924292 Msa1093260:CDS
AGAATTCGAAGGAATTGGAT+CGG 0.602762 7_3:-12930144 Msa1093260:CDS
GGATCATTACTCTTAGGGAA+AGG 0.613606 7_3:+12924258 None:intergenic
AGAGAATTATTACCCTGCGA+TGG 0.620664 7_3:+12924145 None:intergenic
AGAGGAACCACTGTGTGGAA+GGG 0.621705 7_3:+12923341 None:intergenic
AAGACGGGTCTCTACCTCAA+AGG 0.623723 7_3:-12923370 Msa1093260:CDS
GAAGTACTTGATGAGGAACC+TGG 0.626345 7_3:-12925093 Msa1093260:CDS
ATGAAGACAGCAGTGGCCAA+AGG 0.630024 7_3:-12925065 Msa1093260:intron
GAGGAAGCAAGACATCAAGT+TGG 0.638642 7_3:+12927318 None:intergenic
ACAGTGGTTCCTCTGCCAGA+AGG 0.648099 7_3:-12923332 Msa1093260:CDS
AGTTGTTCAAGGCCATCGCA+GGG 0.656514 7_3:-12924157 Msa1093260:intron
GTAATGCTGATAAGGACGAA+TGG 0.662784 7_3:-12926225 Msa1093260:CDS
GGTTGTCCTTGCGGTCCCGG+AGG 0.665723 7_3:+12927299 None:intergenic
GAGTATGCGAAATCAACTTG+AGG 0.676329 7_3:-12926684 Msa1093260:CDS
CTGGCAGAGGAACCACTGTG+TGG 0.695297 7_3:+12923336 None:intergenic
GATAGCTTAATAAACACACA+TGG 0.701136 7_3:+12923223 None:intergenic
CTATCAAGGAAATTGCATTG+AGG 0.707316 7_3:-12923205 Msa1093260:three_prime_UTR
TCGTCCTTATCAGCATTACG+CGG 0.724796 7_3:+12926229 None:intergenic
GACAGTGCCCTTCCACACAG+TGG 0.740895 7_3:-12923348 Msa1093260:CDS
GGTGATGATGAAGACAGCAG+TGG 0.769108 7_3:-12925072 Msa1093260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTATTTTATTT+TGG - chr7_3:12923478-12923497 Msa1093260:intron 0.0%
!!! TTTTTATTTTATTTTATTTT+GGG - chr7_3:12923479-12923498 Msa1093260:intron 0.0%
!!! TTAATTTTAAATTTCGAATT+GGG + chr7_3:12923000-12923019 None:intergenic 10.0%
!!! TTTAATTTTAAATTTCGAAT+TGG + chr7_3:12923001-12923020 None:intergenic 10.0%
!!! TTAATTTTTTTTAGAAATAG+TGG - chr7_3:12926309-12926328 Msa1093260:intron 10.0%
!! ATTTAGAAATATTATTGTTA+AGG + chr7_3:12927944-12927963 None:intergenic 10.0%
!!! ATATTTCTAAATTTGTTATA+TGG - chr7_3:12927952-12927971 Msa1093260:intron 10.0%
!! AAACTAAGCATTTATTTAAT+AGG + chr7_3:12922973-12922992 None:intergenic 15.0%
!! TAAAAGAAAAACAAAAAACA+CGG - chr7_3:12923017-12923036 Msa1093260:three_prime_UTR 15.0%
!! TTATATATTGTGGAAAATTA+CGG - chr7_3:12924357-12924376 Msa1093260:intron 15.0%
!! TAATAATAAATTTCAACACA+TGG + chr7_3:12924560-12924579 None:intergenic 15.0%
!! ATTAGATATGTTGTATATAA+GGG + chr7_3:12926003-12926022 None:intergenic 15.0%
!! AATTAGATATGTTGTATATA+AGG + chr7_3:12926004-12926023 None:intergenic 15.0%
!! AAAAAAAAAAAAATGAGTGT+TGG + chr7_3:12926371-12926390 None:intergenic 15.0%
!! TATAAATATCAAAATACATG+TGG - chr7_3:12926461-12926480 Msa1093260:intron 15.0%
!! ATAAATATCAAAATACATGT+GGG - chr7_3:12926462-12926481 Msa1093260:intron 15.0%
!!! TGTATTTTATCAAACTTAAA+GGG + chr7_3:12926765-12926784 None:intergenic 15.0%
!!! TTGTATTTTATCAAACTTAA+AGG + chr7_3:12926766-12926785 None:intergenic 15.0%
!!! ATTCATTTTCACATTAATTT+GGG - chr7_3:12927330-12927349 Msa1093260:CDS 15.0%
!! AAGTATTAAAAAGAAAGTTA+GGG + chr7_3:12928613-12928632 None:intergenic 15.0%
!!! AAAGTATTAAAAAGAAAGTT+AGG + chr7_3:12928614-12928633 None:intergenic 15.0%
!! TGAAATGAAAATATCTAAAT+TGG + chr7_3:12928669-12928688 None:intergenic 15.0%
!!! TGATATTTAAAACTGAAAAT+GGG + chr7_3:12929480-12929499 None:intergenic 15.0%
!!! ATGATATTTAAAACTGAAAA+TGG + chr7_3:12929481-12929500 None:intergenic 15.0%
!! ATTGTAGTTTAATTAAATGT+TGG - chr7_3:12930230-12930249 Msa1093260:five_prime_UTR 15.0%
!! TTGTAGTTTAATTAAATGTT+GGG - chr7_3:12930231-12930250 Msa1093260:five_prime_UTR 15.0%
!! ATCCTAATTGTAATGAAATT+TGG - chr7_3:12923387-12923406 Msa1093260:CDS 20.0%
!! ATCCAAATTTCATTACAATT+AGG + chr7_3:12923392-12923411 None:intergenic 20.0%
!! TAAATTTCGTAAACATTGAT+TGG - chr7_3:12923567-12923586 Msa1093260:intron 20.0%
!! CTAATGAAAAAAATATAACG+AGG + chr7_3:12923752-12923771 None:intergenic 20.0%
!!! CTCGTTATATTTTTTTCATT+AGG - chr7_3:12923750-12923769 Msa1093260:intron 20.0%
!! TAATACATAAGTGTTTATCA+TGG - chr7_3:12924020-12924039 Msa1093260:intron 20.0%
!! CCACAATATATAATCAATAA+TGG + chr7_3:12924350-12924369 None:intergenic 20.0%
!!! CCATTATTGATTATATATTG+TGG - chr7_3:12924347-12924366 Msa1093260:intron 20.0%
!! TATTATTAAACTTAAGTAGC+AGG - chr7_3:12924572-12924591 Msa1093260:intron 20.0%
!!! AAAATGTGCTTTATCATTTT+CGG - chr7_3:12924598-12924617 Msa1093260:intron 20.0%
!!! ATTTATTTTCATTGATGTTG+TGG - chr7_3:12924816-12924835 Msa1093260:intron 20.0%
!! AAGAAAATTAAATGCTTAAG+AGG + chr7_3:12925805-12925824 None:intergenic 20.0%
!!! CTAATTCTTCATTTTGTTTT+TGG - chr7_3:12926018-12926037 Msa1093260:intron 20.0%
!! ATAACAAATCAAAATTCTCT+TGG + chr7_3:12926252-12926271 None:intergenic 20.0%
!!! AGAGAATTTTGATTTGTTAT+CGG - chr7_3:12926252-12926271 Msa1093260:intron 20.0%
!!! AAAAGTGATTCATTTTGATA+AGG - chr7_3:12927193-12927212 Msa1093260:intron 20.0%
!!! TCATTTTGATAAGGAATTAA+AGG - chr7_3:12927202-12927221 Msa1093260:intron 20.0%
!! AATTAATGTGAAAATGAATG+TGG + chr7_3:12927329-12927348 None:intergenic 20.0%
!!! CATTCATTTTCACATTAATT+TGG - chr7_3:12927329-12927348 Msa1093260:CDS 20.0%
!! GTAATATCTTATACAATGAA+AGG - chr7_3:12927434-12927453 Msa1093260:intron 20.0%
!! AAATATTACTTTCACCAATA+AGG + chr7_3:12927904-12927923 None:intergenic 20.0%
!! AATGAAAATATCTAAATTGG+TGG + chr7_3:12928666-12928685 None:intergenic 20.0%
!!! AAAAAGTATAACTCAGTTTT+AGG + chr7_3:12928933-12928952 None:intergenic 20.0%
!! ATATTGTTACTACATTTGAA+TGG - chr7_3:12929037-12929056 Msa1093260:intron 20.0%
!! AATAATAGACTACAAATTCA+TGG + chr7_3:12929313-12929332 None:intergenic 20.0%
!!! TCTTTTATTCTTTAGTGATT+AGG - chr7_3:12929547-12929566 Msa1093260:intron 20.0%
!! TTTAGTGATTAGGAATTAAT+TGG - chr7_3:12929557-12929576 Msa1093260:intron 20.0%
!! CTTCTATAAATTTAGAGATT+TGG + chr7_3:12929604-12929623 None:intergenic 20.0%
!! CAAATCTCTAAATTTATAGA+AGG - chr7_3:12929602-12929621 Msa1093260:intron 20.0%
!!! ATAATTTTATCAGTCTAACT+TGG + chr7_3:12929718-12929737 None:intergenic 20.0%
!! ACAATTTCATTATAAAGTGA+TGG + chr7_3:12929744-12929763 None:intergenic 20.0%
!!! GATAGAATTTTTACATTTTC+AGG - chr7_3:12929847-12929866 Msa1093260:intron 20.0%
!! TGTAGTTTAATTAAATGTTG+GGG - chr7_3:12930232-12930251 Msa1093260:five_prime_UTR 20.0%
!! GATAAACTTTCAAAATGTTT+AGG + chr7_3:12930324-12930343 None:intergenic 20.0%
!! AATTAGATCAATAAGAGAAT+TGG + chr7_3:12930346-12930365 None:intergenic 20.0%
!! TCTAATTATTGTAATTGAAG+TGG - chr7_3:12930359-12930378 Msa1093260:five_prime_UTR 20.0%
!! AATATAATCACCTTAATGTT+AGG + chr7_3:12930433-12930452 None:intergenic 20.0%
!!! CAAATCATGATTTATTTCTG+CGG - chr7_3:12923627-12923646 Msa1093260:intron 25.0%
!!! AAATCATGATTTATTTCTGC+GGG - chr7_3:12923628-12923647 Msa1093260:intron 25.0%
!! CTTATGTATTAGCTTACATA+GGG + chr7_3:12924011-12924030 None:intergenic 25.0%
!! ACTTATGTATTAGCTTACAT+AGG + chr7_3:12924012-12924031 None:intergenic 25.0%
!!! GTCTACGTACAATTTTTTTT+TGG - chr7_3:12924263-12924282 Msa1093260:CDS 25.0%
! TATAATCAATAATGGCAACA+CGG + chr7_3:12924342-12924361 None:intergenic 25.0%
! AAAATGCTTCTTGTAAAAAG+TGG - chr7_3:12924681-12924700 Msa1093260:intron 25.0%
!! TTATATTCGAGTTAAGTAAC+AGG - chr7_3:12924774-12924793 Msa1093260:intron 25.0%
! CTTTATTCTCATTGATATTG+CGG - chr7_3:12925120-12925139 Msa1093260:intron 25.0%
! TTTATTCTCATTGATATTGC+GGG - chr7_3:12925121-12925140 Msa1093260:intron 25.0%
!! TTTAGTTTCCATCACAAATT+GGG + chr7_3:12925337-12925356 None:intergenic 25.0%
!! ATTTAGTTTCCATCACAAAT+TGG + chr7_3:12925338-12925357 None:intergenic 25.0%
! CTAGAATGAAGATCAATATT+CGG - chr7_3:12925602-12925621 Msa1093260:intron 25.0%
!!! TTGGTAGTTTTTAAAATGTG+TGG + chr7_3:12925828-12925847 None:intergenic 25.0%
!!! AAGAGTTGATAAGTTTATCT+TGG + chr7_3:12925847-12925866 None:intergenic 25.0%
! AGATAAACTTATCAACTCTT+CGG - chr7_3:12925847-12925866 Msa1093260:intron 25.0%
! TTCATTCTTATCTAACAAGA+GGG + chr7_3:12925905-12925924 None:intergenic 25.0%
! ATTCATTCTTATCTAACAAG+AGG + chr7_3:12925906-12925925 None:intergenic 25.0%
!! AAGCCTTATAAGAATTGTTT+AGG - chr7_3:12925931-12925950 Msa1093260:intron 25.0%
!!! TTTTTTTAGAAATAGTGGTG+TGG - chr7_3:12926314-12926333 Msa1093260:intron 25.0%
! AAACTAACATCTAATTGGAA+CGG + chr7_3:12926586-12926605 None:intergenic 25.0%
! GACAAAAACTAACATCTAAT+TGG + chr7_3:12926591-12926610 None:intergenic 25.0%
!!! TAGAATGTTCTAAAATCACA+AGG - chr7_3:12926947-12926966 Msa1093260:intron 25.0%
! TTATTAACTTTCACATTCTC+AGG - chr7_3:12927035-12927054 Msa1093260:intron 25.0%
!!! TGCATTAGTTTAATGTGTTT+TGG - chr7_3:12927102-12927121 Msa1093260:intron 25.0%
! TAAGAACAACAGAAAAAGTA+AGG - chr7_3:12927467-12927486 Msa1093260:intron 25.0%
! AAGAACAACAGAAAAAGTAA+GGG - chr7_3:12927468-12927487 Msa1093260:intron 25.0%
! CTAGTTACTAATGTTGAATT+AGG + chr7_3:12927687-12927706 None:intergenic 25.0%
! AAGACACATAATAAAGACTT+CGG - chr7_3:12927830-12927849 Msa1093260:intron 25.0%
! GCTCAAATAGTTTGAAAATA+TGG + chr7_3:12928000-12928019 None:intergenic 25.0%
!! TATTTTCAAACTATTTGAGC+TGG - chr7_3:12928000-12928019 Msa1093260:intron 25.0%
!! ATTTTCAAACTATTTGAGCT+GGG - chr7_3:12928001-12928020 Msa1093260:intron 25.0%
! ATGAAAAAATAGTAGCTGTT+TGG - chr7_3:12928202-12928221 Msa1093260:intron 25.0%
! TCGTGTTTAATAGTTTACAA+CGG - chr7_3:12928365-12928384 Msa1093260:intron 25.0%
! TTTAATAGTTTACAACGGTT+GGG - chr7_3:12928370-12928389 Msa1093260:intron 25.0%
!!! TATCCTCAATTTTGACTTAT+TGG - chr7_3:12928505-12928524 Msa1093260:intron 25.0%
! AACATCTACCATTGAAAATA+TGG + chr7_3:12928589-12928608 None:intergenic 25.0%
! TCACAACATTAATTGCATAA+TGG - chr7_3:12928817-12928836 Msa1093260:intron 25.0%
! ACAATAAAATCCAAGTAGAA+TGG + chr7_3:12928993-12929012 None:intergenic 25.0%
!! ATTTTATTGTGTTGAACAGT+TGG - chr7_3:12929003-12929022 Msa1093260:intron 25.0%
!! TTTTATTGTGTTGAACAGTT+GGG - chr7_3:12929004-12929023 Msa1093260:intron 25.0%
! AAAATTGGTTAGTATCATGT+TGG + chr7_3:12929365-12929384 None:intergenic 25.0%
! AACATAAAGACAATTGAAGT+AGG - chr7_3:12929668-12929687 Msa1093260:intron 25.0%
!! ACTTACGAATTTTACATATC+AGG - chr7_3:12929825-12929844 Msa1093260:intron 25.0%
! TTTCAAAATGTTTAGGCAAT+GGG + chr7_3:12930317-12930336 None:intergenic 25.0%
! GAGTAATTGTTGAGTTTTTG+AGG + chr7_3:12922951-12922970 None:intergenic 30.0%
! TCCTATTTAGTTTCCGATTT+CGG - chr7_3:12923125-12923144 Msa1093260:three_prime_UTR 30.0%
! ACCAGACATTGTTTCAATTT+TGG - chr7_3:12923220-12923239 Msa1093260:three_prime_UTR 30.0%
TCCAAAATTGAAACAATGTC+TGG + chr7_3:12923224-12923243 None:intergenic 30.0%
!! TTCAATTTTGGAGAATTCGA+AGG - chr7_3:12923232-12923251 Msa1093260:three_prime_UTR 30.0%
! CTCTATTGATTGATTGTGTT+TGG - chr7_3:12923450-12923469 Msa1093260:intron 30.0%
!! AATCATGATTTATTTCTGCG+GGG - chr7_3:12923629-12923648 Msa1093260:intron 30.0%
ATAAGTCAATCCAAACAAAC+CGG + chr7_3:12923671-12923690 None:intergenic 30.0%
CAAAATTAGCTCAATCCAAA+CGG - chr7_3:12923984-12924003 Msa1093260:intron 30.0%
AACAAAACTTAGTGTCTGTT+TGG + chr7_3:12924084-12924103 None:intergenic 30.0%
TGCTTGTGATAACTGAAAAA+TGG - chr7_3:12924479-12924498 Msa1093260:intron 30.0%
GCTTGTGATAACTGAAAAAT+GGG - chr7_3:12924480-12924499 Msa1093260:intron 30.0%
CGCATAAAAAATCTTGATGT+CGG - chr7_3:12924628-12924647 Msa1093260:intron 30.0%
!!! TGAATTTTCCTTGTTTTCGT+TGG - chr7_3:12924535-12924554 Msa1093260:intron 30.0%
TTATTCTCATTGATATTGCG+GGG - chr7_3:12925122-12925141 Msa1093260:intron 30.0%
ATCAAATACCCAATTTGTGA+TGG - chr7_3:12925326-12925345 Msa1093260:intron 30.0%
TATTTCATCAGCTTCCATAA+AGG - chr7_3:12925361-12925380 Msa1093260:intron 30.0%
! AGCTTCCATAAAGGAATTTT+GGG - chr7_3:12925370-12925389 Msa1093260:intron 30.0%
AAGTTCCCAAAATTCCTTTA+TGG + chr7_3:12925378-12925397 None:intergenic 30.0%
ATCTGAGCTAGTATATCATT+GGG - chr7_3:12925540-12925559 Msa1093260:intron 30.0%
TGGCCTAAACAATTCTTATA+AGG + chr7_3:12925937-12925956 None:intergenic 30.0%
! TTTCACATCGACTAAAGATA+TGG + chr7_3:12925957-12925976 None:intergenic 30.0%
! TTTATGAGATTCTTTTGTCG+AGG - chr7_3:12926490-12926509 Msa1093260:intron 30.0%
AACTAACATCTAATTGGAAC+GGG + chr7_3:12926585-12926604 None:intergenic 30.0%
GTCTCTAATATTCTTAGATG+AGG - chr7_3:12927064-12927083 Msa1093260:intron 30.0%
! TTATACAATGAAAGGTGTAG+AGG - chr7_3:12927442-12927461 Msa1093260:intron 30.0%
AGAACAACAGAAAAAGTAAG+GGG - chr7_3:12927469-12927488 Msa1093260:intron 30.0%
! AATCACTTCAAAGCATCAAT+TGG + chr7_3:12927571-12927590 None:intergenic 30.0%
!! ATTGATGCTTTGAAGTGATT+AGG - chr7_3:12927571-12927590 Msa1093260:intron 30.0%
TAACAAGTCTATACGTTGTT+TGG - chr7_3:12927631-12927650 Msa1093260:CDS 30.0%
AAGTGGTTCATGATATTGTA+TGG + chr7_3:12927784-12927803 None:intergenic 30.0%
TCTCTGATTGATACCATATA+TGG - chr7_3:12927856-12927875 Msa1093260:intron 30.0%
AACACGATAAATTTCCCAAT+AGG + chr7_3:12928352-12928371 None:intergenic 30.0%
GTTTAATAGTTTACAACGGT+TGG - chr7_3:12928369-12928388 Msa1093260:intron 30.0%
GTGGAAAGAAATATTAAGCA+AGG + chr7_3:12928407-12928426 None:intergenic 30.0%
CGAAATGTTTATAAATGTGG+TGG + chr7_3:12928426-12928445 None:intergenic 30.0%
CTGCGAAATGTTTATAAATG+TGG + chr7_3:12928429-12928448 None:intergenic 30.0%
TATAAACATTTCGCAGTAGT+TGG - chr7_3:12928433-12928452 Msa1093260:intron 30.0%
TAAAACAATAGACCTAACGT+TGG + chr7_3:12928479-12928498 None:intergenic 30.0%
! CTACTCTACCATATTTTCAA+TGG - chr7_3:12928578-12928597 Msa1093260:intron 30.0%
TGTTGAATGAGAAAAACTAG+AGG - chr7_3:12928709-12928728 Msa1093260:intron 30.0%
TCCAGTTTCATACAACATTA+CGG - chr7_3:12928877-12928896 Msa1093260:intron 30.0%
!!! AGTATAACTCAGTTTTAGGA+AGG + chr7_3:12928929-12928948 None:intergenic 30.0%
GACGAAATAAAAGGATGTTT+CGG + chr7_3:12928971-12928990 None:intergenic 30.0%
AGTAGAATGGACGAAATAAA+AGG + chr7_3:12928980-12928999 None:intergenic 30.0%
TTTATTTCGTCCATTCTACT+TGG - chr7_3:12928980-12928999 Msa1093260:intron 30.0%
!!! ATGGCTTGTGCTTATTTTTT+CGG - chr7_3:12929056-12929075 Msa1093260:intron 30.0%
! TTGATGGATCATTACTCTTA+GGG + chr7_3:12929137-12929156 None:intergenic 30.0%
TATAAAGCAACAGTTGTTCA+AGG - chr7_3:12929219-12929238 Msa1093260:intron 30.0%
AATTCTCTATTTCCCTTCAT+AGG - chr7_3:12929257-12929276 Msa1093260:intron 30.0%
ATTCTCTATTTCCCTTCATA+GGG - chr7_3:12929258-12929277 Msa1093260:intron 30.0%
AACATGCACAACACAAAAAT+TGG + chr7_3:12929380-12929399 None:intergenic 30.0%
AATTGAAGTAGGATGTCATT+AGG - chr7_3:12929679-12929698 Msa1093260:intron 30.0%
ATTGAAGTAGGATGTCATTA+GGG - chr7_3:12929680-12929699 Msa1093260:intron 30.0%
ATTCTTCAAAAAATAGCCGA+AGG + chr7_3:12929885-12929904 None:intergenic 30.0%
! AACTAGCTTGTATTGTTGTT+TGG - chr7_3:12930127-12930146 Msa1093260:CDS 30.0%
! TGTTGTTTGGTTGTGTAATA+TGG - chr7_3:12930140-12930159 Msa1093260:CDS 30.0%
GATAGCTTAATAAACACACA+TGG + chr7_3:12930167-12930186 None:intergenic 30.0%
GTGTGTTTATTAAGCTATCA+AGG - chr7_3:12930168-12930187 Msa1093260:CDS 30.0%
GATGATAGATATCTAACGTT+TGG - chr7_3:12930254-12930273 Msa1093260:five_prime_UTR 30.0%
TTCAAAATGTTTAGGCAATG+GGG + chr7_3:12930316-12930335 None:intergenic 30.0%
CTTTCAAAATGTTTAGGCAA+TGG + chr7_3:12930318-12930337 None:intergenic 30.0%
GAAGTGGAAATCTATCAATT+TGG - chr7_3:12930375-12930394 Msa1093260:five_prime_UTR 30.0%
TCCGAAATCGGAAACTAAAT+AGG + chr7_3:12923129-12923148 None:intergenic 35.0%
! TCTTCTTTTCGATCCGAAAT+CGG + chr7_3:12923141-12923160 None:intergenic 35.0%
TTTGGAGAATTCGAAGGAAT+TGG - chr7_3:12923238-12923257 Msa1093260:three_prime_UTR 35.0%
AGAATTCGAAGGAATTGGAT+CGG - chr7_3:12923243-12923262 Msa1093260:three_prime_UTR 35.0%
AGAGAAAGTGAGTAACTAAC+TGG + chr7_3:12923330-12923349 None:intergenic 35.0%
GGGTTCATTAATTTAGACTC+CGG - chr7_3:12923649-12923668 Msa1093260:intron 35.0%
! AATTTAGACTCCGGTTTGTT+TGG - chr7_3:12923658-12923677 Msa1093260:intron 35.0%
! TGTTTGGATTGACTTATCTG+AGG - chr7_3:12923674-12923693 Msa1093260:intron 35.0%
!! CAAGTTTTGTGAGACTGTTT+AGG - chr7_3:12923710-12923729 Msa1093260:intron 35.0%
TTTCATAAGCTCAACCCAAA+CGG + chr7_3:12923821-12923840 None:intergenic 35.0%
!!! GACACTAAGTTTTGTTGTTG+TGG - chr7_3:12924088-12924107 Msa1093260:intron 35.0%
ACACTGCCGATATTGAATTT+GGG - chr7_3:12924195-12924214 Msa1093260:CDS 35.0%
CGACATCCCAAATTCAATAT+CGG + chr7_3:12924204-12924223 None:intergenic 35.0%
TGATGTCACAACCAAAATTG+TGG - chr7_3:12924432-12924451 Msa1093260:intron 35.0%
AAAATGGGCATATCAACTCA+TGG - chr7_3:12924495-12924514 Msa1093260:intron 35.0%
! TGCTTTATCATTTTCGGTTG+TGG - chr7_3:12924604-12924623 Msa1093260:intron 35.0%
! ACATTCTGCAACCTCAATTT+TGG + chr7_3:12924656-12924675 None:intergenic 35.0%
! AAAAGTGGACAGCTTTAATC+AGG - chr7_3:12924696-12924715 Msa1093260:intron 35.0%
GCTTTAATCAGGATTAGAGT+TGG - chr7_3:12924707-12924726 Msa1093260:intron 35.0%
CACACATAACAGAGAAAACA+AGG + chr7_3:12924748-12924767 None:intergenic 35.0%
!! CTTGTTTTCTCTGTTATGTG+TGG - chr7_3:12924746-12924765 Msa1093260:intron 35.0%
ATTGATGTTGTGGAGAATCA+TGG - chr7_3:12924826-12924845 Msa1093260:intron 35.0%
AACACATACCAACGAAAACA+AGG + chr7_3:12925014-12925033 None:intergenic 35.0%
!! TCTCGGGATGTTTTCTAAAA+TGG - chr7_3:12925228-12925247 Msa1093260:intron 35.0%
GATTTAGTGAGGATTAGAGT+TGG - chr7_3:12925263-12925282 Msa1093260:intron 35.0%
! TTTGATGAACTACCCTTTTG+AGG + chr7_3:12925312-12925331 None:intergenic 35.0%
! CAGCTTCCATAAAGGAATTT+TGG - chr7_3:12925369-12925388 Msa1093260:intron 35.0%
TGCTATAAGCTTTCGATCTT+TGG - chr7_3:12925494-12925513 Msa1093260:intron 35.0%
GATCTGAGCTAGTATATCAT+TGG - chr7_3:12925539-12925558 Msa1093260:intron 35.0%
! TATCAACATAGTGGAAAGAC+TGG + chr7_3:12926047-12926066 None:intergenic 35.0%
! AAGTTGGCTTATCAACATAG+TGG + chr7_3:12926056-12926075 None:intergenic 35.0%
TATCAAAATACATGTGGGAG+TGG - chr7_3:12926467-12926486 Msa1093260:intron 35.0%
AACAGTTCTTCTGTTACAGA+AGG - chr7_3:12926623-12926642 Msa1093260:intron 35.0%
AAACAGAGTCAGACATTTCA+AGG - chr7_3:12926672-12926691 Msa1093260:CDS 35.0%
!! TCAAGTTGATTTCGCATACT+CGG + chr7_3:12926704-12926723 None:intergenic 35.0%
GAGAGAGAGAGAATATTATC+AGG + chr7_3:12927009-12927028 None:intergenic 35.0%
ATAAATAGAGCAGGGAAGAT+AGG + chr7_3:12927364-12927383 None:intergenic 35.0%
!! CCTAGTTGATAAATAGAGCA+GGG + chr7_3:12927372-12927391 None:intergenic 35.0%
CCTGCTCTATTTATCAACTA+GGG - chr7_3:12927370-12927389 Msa1093260:intron 35.0%
CTGCTCTATTTATCAACTAG+GGG - chr7_3:12927371-12927390 Msa1093260:intron 35.0%
ATTTATCAACTAGGGGACTT+AGG - chr7_3:12927378-12927397 Msa1093260:intron 35.0%
TTTATCAACTAGGGGACTTA+GGG - chr7_3:12927379-12927398 Msa1093260:intron 35.0%
! ACTTTTCCTAATGTTAGCAC+TGG + chr7_3:12927534-12927553 None:intergenic 35.0%
! CAACATTAGTAACTAGCTCT+AGG - chr7_3:12927691-12927710 Msa1093260:CDS 35.0%
!!! GCTTAAGCTTTTGAGATAAG+TGG + chr7_3:12927801-12927820 None:intergenic 35.0%
! CAAAGTAGTCTTGCCATATA+TGG + chr7_3:12927872-12927891 None:intergenic 35.0%
CTTTGACTCTGATACCTTAT+TGG - chr7_3:12927887-12927906 Msa1093260:intron 35.0%
! AACTATTTGAGCTGGGATTT+TGG - chr7_3:12928008-12928027 Msa1093260:intron 35.0%
! ACTATTTGAGCTGGGATTTT+GGG - chr7_3:12928009-12928028 Msa1093260:intron 35.0%
!!! TGGGATTTTGGGATTGAATT+TGG - chr7_3:12928020-12928039 Msa1093260:intron 35.0%
! CAGATTTGAAGTACTTGATG+AGG - chr7_3:12928287-12928306 Msa1093260:intron 35.0%
TTTCCCAATAGGTTTACCTT+TGG + chr7_3:12928341-12928360 None:intergenic 35.0%
GCACCAATAAGTCAAAATTG+AGG + chr7_3:12928511-12928530 None:intergenic 35.0%
ACCATGCACACTCTATAATT+TGG - chr7_3:12928764-12928783 Msa1093260:intron 35.0%
TCCAAATTATAGAGTGTGCA+TGG + chr7_3:12928768-12928787 None:intergenic 35.0%
TCCGTAATGTTGTATGAAAC+TGG + chr7_3:12928881-12928900 None:intergenic 35.0%
CATTACGGATCATATAGTTG+TGG - chr7_3:12928892-12928911 Msa1093260:intron 35.0%
AAAGGAATGATATGTCCCAT+TGG + chr7_3:12929114-12929133 None:intergenic 35.0%
! CTTGATGGATCATTACTCTT+AGG + chr7_3:12929138-12929157 None:intergenic 35.0%
! TTTTCCAGGTGGAAAATCTT+GGG + chr7_3:12929163-12929182 None:intergenic 35.0%
TTATAAAGTGCAGTAGTTCC+TGG + chr7_3:12929204-12929223 None:intergenic 35.0%
ACTACAAATTCATGGAAGCA+AGG + chr7_3:12929305-12929324 None:intergenic 35.0%
ATTCCTCACATGACATCAAA+TGG - chr7_3:12929499-12929518 Msa1093260:intron 35.0%
TTTCCATTTGATGTCATGTG+AGG + chr7_3:12929505-12929524 None:intergenic 35.0%
ATGTCGACAACATCATTCAA+AGG + chr7_3:12929647-12929666 None:intergenic 35.0%
CATATTGATCCCTAGACTTT+GGG + chr7_3:12929801-12929820 None:intergenic 35.0%
TCATATTGATCCCTAGACTT+TGG + chr7_3:12929802-12929821 None:intergenic 35.0%
CAGGAACTAATGTATTCCTT+CGG - chr7_3:12929866-12929885 Msa1093260:intron 35.0%
TCTTATGATTGCTTACTCTG+TGG - chr7_3:12929953-12929972 Msa1093260:intron 35.0%
TGATTGGAACAGTTATGTGT+TGG - chr7_3:12929976-12929995 Msa1093260:intron 35.0%
!! TTTGATGATGACGAAGAAGA+CGG - chr7_3:12930001-12930020 Msa1093260:intron 35.0%
ATTTATTGACGATGTCCTTC+TGG + chr7_3:12930073-12930092 None:intergenic 35.0%
CTATCAAGGAAATTGCATTG+AGG - chr7_3:12930182-12930201 Msa1093260:CDS 35.0%
CATTCATACGTGCATAAAGT+TGG + chr7_3:12930208-12930227 None:intergenic 35.0%
GTTCTGTATAACAACTGTTG+TGG - chr7_3:12930276-12930295 Msa1093260:five_prime_UTR 35.0%
TTCATAAGCTCAACCCAAAC+GGG + chr7_3:12923820-12923839 None:intergenic 40.0%
GACACTGCCGATATTGAATT+TGG - chr7_3:12924194-12924213 Msa1093260:CDS 40.0%
! CAGTTGTGTGTTTGAGTTTC+AGG - chr7_3:12924224-12924243 Msa1093260:CDS 40.0%
! TTGTGTGTTTGAGTTTCAGG+TGG - chr7_3:12924227-12924246 Msa1093260:CDS 40.0%
TGTGTTATACTCACGAGTCA+TGG - chr7_3:12924289-12924308 Msa1093260:CDS 40.0%
GTGTTATACTCACGAGTCAT+GGG - chr7_3:12924290-12924309 Msa1093260:CDS 40.0%
! GTGAACAAGGTTTTCAGTTG+TGG - chr7_3:12924316-12924335 Msa1093260:intron 40.0%
AGATAACTGCGATCACGTTT+CGG - chr7_3:12924388-12924407 Msa1093260:intron 40.0%
TGTCACAACCAAAATTGTGG+TGG - chr7_3:12924435-12924454 Msa1093260:intron 40.0%
AACACATGGCAACGAAAACA+AGG + chr7_3:12924546-12924565 None:intergenic 40.0%
TTGCGAATGCGATTGTGTTT+CGG - chr7_3:12924863-12924882 Msa1093260:intron 40.0%
! AGATTGCTGCTTGTGAAAAG+TGG - chr7_3:12924947-12924966 Msa1093260:intron 40.0%
! AAAAGTGGTCAGCTTTAGTC+AGG - chr7_3:12924962-12924981 Msa1093260:intron 40.0%
ATTGATATTGCGGGGAATCA+TGG - chr7_3:12925130-12925149 Msa1093260:intron 40.0%
TGGACGCATCAAAAATCTTG+AGG - chr7_3:12925187-12925206 Msa1093260:intron 40.0%
GCTTGTGAACAGATTTAGTG+AGG - chr7_3:12925252-12925271 Msa1093260:intron 40.0%
!! TCATTGGGAGCTTGTTAGAT+AGG - chr7_3:12925555-12925574 Msa1093260:intron 40.0%
TTTGCTAGTGAGTTATCTCC+AGG + chr7_3:12925715-12925734 None:intergenic 40.0%
! TCAACTCTTCGGATTTTTCC+TGG - chr7_3:12925858-12925877 Msa1093260:intron 40.0%
! CAACTCTTCGGATTTTTCCT+GGG - chr7_3:12925859-12925878 Msa1093260:intron 40.0%
GACAAACCTAATCTTCTTCG+TGG + chr7_3:12926112-12926131 None:intergenic 40.0%
! TATGACGTTTTGCAGCAATC+AGG - chr7_3:12926431-12926450 Msa1093260:intron 40.0%
GAGTATGCGAAATCAACTTG+AGG - chr7_3:12926703-12926722 Msa1093260:CDS 40.0%
! ATATTCTTAGATGAGGCGTC+TGG - chr7_3:12927071-12927090 Msa1093260:intron 40.0%
!!! GTTTTGGCTTCTCACTTTTC+AGG - chr7_3:12927118-12927137 Msa1093260:intron 40.0%
GTAATGCTGATAAGGACGAA+TGG - chr7_3:12927162-12927181 Msa1093260:intron 40.0%
CCCTGCTCTATTTATCAACT+AGG - chr7_3:12927369-12927388 Msa1093260:intron 40.0%
!! CCCTAGTTGATAAATAGAGC+AGG + chr7_3:12927373-12927392 None:intergenic 40.0%
! AGATCCCAAACTAGCAGTTT+TGG - chr7_3:12927502-12927521 Msa1093260:intron 40.0%
! GATCCCAAACTAGCAGTTTT+GGG - chr7_3:12927503-12927522 Msa1093260:intron 40.0%
! ACACCCAAAACTGCTAGTTT+GGG + chr7_3:12927509-12927528 None:intergenic 40.0%
TACACCCAAAACTGCTAGTT+TGG + chr7_3:12927510-12927529 None:intergenic 40.0%
GTGTAACCAGTGCTAACATT+AGG - chr7_3:12927525-12927544 Msa1093260:intron 40.0%
! GACATGCCAGTCTTAGATTT+TGG - chr7_3:12927656-12927675 Msa1093260:CDS 40.0%
GAGGTTTAATATGGAAGCAG+AGG - chr7_3:12927756-12927775 Msa1093260:intron 40.0%
TTATATGGCGACCGCAATTA+CGG - chr7_3:12927967-12927986 Msa1093260:intron 40.0%
!! ACCAATTGTTTGAGTTGCTC+TGG - chr7_3:12928129-12928148 Msa1093260:intron 40.0%
ACCAGAGCAACTCAAACAAT+TGG + chr7_3:12928133-12928152 None:intergenic 40.0%
TGGCCAAAGGTAAACCTATT+GGG - chr7_3:12928335-12928354 Msa1093260:intron 40.0%
CACATGAATCAACCAACGTT+AGG - chr7_3:12928464-12928483 Msa1093260:intron 40.0%
TGGACACACAAGACATGATA+CGG + chr7_3:12928646-12928665 None:intergenic 40.0%
! GAAAAACTAGAGGCATGAGA+TGG - chr7_3:12928719-12928738 Msa1093260:intron 40.0%
AGACAGTACAAGCTTCCAAT+GGG - chr7_3:12929096-12929115 Msa1093260:intron 40.0%
GGATCATTACTCTTAGGGAA+AGG + chr7_3:12929132-12929151 None:intergenic 40.0%
! GTTTTCCAGGTGGAAAATCT+TGG + chr7_3:12929164-12929183 None:intergenic 40.0%
AGAGAATTATTACCCTGCGA+TGG + chr7_3:12929245-12929264 None:intergenic 40.0%
AAGTGATAGCACCCTATGAA+GGG + chr7_3:12929272-12929291 None:intergenic 40.0%
TAAGTGATAGCACCCTATGA+AGG + chr7_3:12929273-12929292 None:intergenic 40.0%
TATCTATCACTATTGCGCAG+AGG - chr7_3:12929413-12929432 Msa1093260:intron 40.0%
ATTGCTTACTCTGTGGTGAT+TGG - chr7_3:12929960-12929979 Msa1093260:intron 40.0%
!! TTGATGATGACGAAGAAGAC+GGG - chr7_3:12930002-12930021 Msa1093260:intron 40.0%
TGTAAAATGCACGTACGAGT+TGG - chr7_3:12930407-12930426 Msa1093260:five_prime_UTR 40.0%
! TACGAGTTGGCCTAACATTA+AGG - chr7_3:12930420-12930439 Msa1093260:five_prime_UTR 40.0%
CGAAGGAATTGGATCGGTTA+AGG - chr7_3:12923249-12923268 Msa1093260:three_prime_UTR 45.0%
GGATCGGTTAAGGAAAGATC+AGG - chr7_3:12923259-12923278 Msa1093260:three_prime_UTR 45.0%
TGATAGCTTATGTCCCCGTT+TGG - chr7_3:12923803-12923822 Msa1093260:intron 45.0%
GATAGCTTATGTCCCCGTTT+GGG - chr7_3:12923804-12923823 Msa1093260:intron 45.0%
TCATAAGCTCAACCCAAACG+GGG + chr7_3:12923819-12923838 None:intergenic 45.0%
TAGCTTACATAGGGTCCGTT+TGG + chr7_3:12924002-12924021 None:intergenic 45.0%
GTAAGCGCTTGTGCTTTACA+CGG - chr7_3:12924042-12924061 Msa1093260:intron 45.0%
! TGTGTTTGAGTTTCAGGTGG+TGG - chr7_3:12924230-12924249 Msa1093260:CDS 45.0%
GAGTCATGGGTTTGTGAACA+AGG - chr7_3:12924303-12924322 Msa1093260:intron 45.0%
! ACAGCACACCACCACAATTT+TGG + chr7_3:12924446-12924465 None:intergenic 45.0%
!!! GTGGTGGTGTGCTGTTTTTT+TGG - chr7_3:12924451-12924470 Msa1093260:intron 45.0%
TGATGTCGGAGCCAAAATTG+AGG - chr7_3:12924642-12924661 Msa1093260:intron 45.0%
ATGCGATTGTGTTTCGGTTG+TGG - chr7_3:12924869-12924888 Msa1093260:intron 45.0%
ATAGTCTACATCTGCGACTG+TGG + chr7_3:12924922-12924941 None:intergenic 45.0%
TGCTTGCATGCTTCCTCAAA+AGG - chr7_3:12925296-12925315 Msa1093260:intron 45.0%
GCTTGCATGCTTCCTCAAAA+GGG - chr7_3:12925297-12925316 Msa1093260:intron 45.0%
TTTCGATGTAGCTCCTGAAG+TGG - chr7_3:12925681-12925700 Msa1093260:intron 45.0%
TGTGAATCTGAGTTAGACCC+AGG + chr7_3:12925879-12925898 None:intergenic 45.0%
GAGGAAGCAAGACATCAAGT+TGG + chr7_3:12926072-12926091 None:intergenic 45.0%
ACTTGATGTCTTGCTTCCTC+CGG - chr7_3:12926072-12926091 Msa1093260:intron 45.0%
GGACAACCACGAAGAAGATT+AGG - chr7_3:12926103-12926122 Msa1093260:intron 45.0%
AAATAGTGGTGTGGTGTGCT+AGG - chr7_3:12926323-12926342 Msa1093260:intron 45.0%
CAGAAGGCAATGAGCAGAAA+AGG - chr7_3:12926639-12926658 Msa1093260:intron 45.0%
!!! TCACTTTTCAGGTAGCAGCT+AGG - chr7_3:12927129-12927148 Msa1093260:intron 45.0%
!!! CACTTTTCAGGTAGCAGCTA+GGG - chr7_3:12927130-12927149 Msa1093260:intron 45.0%
TCGTCCTTATCAGCATTACG+CGG + chr7_3:12927161-12927180 None:intergenic 45.0%
!!! GCCAGTCTTAGATTTTGGCT+AGG - chr7_3:12927661-12927680 Msa1093260:CDS 45.0%
! GCCTAGCCAAAATCTAAGAC+TGG + chr7_3:12927665-12927684 None:intergenic 45.0%
AGGCGGGTAGAGGTTTAATA+TGG - chr7_3:12927747-12927766 Msa1093260:intron 45.0%
GACAATCACAAACTCTCCTC+AGG - chr7_3:12928063-12928082 Msa1093260:intron 45.0%
GTTAGTCACCCATGCATACT+GGG + chr7_3:12928090-12928109 None:intergenic 45.0%
AGTTAGTCACCCATGCATAC+TGG + chr7_3:12928091-12928110 None:intergenic 45.0%
! GAAGTACTTGATGAGGAACC+TGG - chr7_3:12928294-12928313 Msa1093260:intron 45.0%
GTGGCCAAAGGTAAACCTAT+TGG - chr7_3:12928334-12928353 Msa1093260:intron 45.0%
! GTTTACAACGGTTGGGTTGT+TGG - chr7_3:12928377-12928396 Msa1093260:intron 45.0%
GTAGAGTAGACTCTTGCCTT+CGG + chr7_3:12928567-12928586 None:intergenic 45.0%
CAGACAGTACAAGCTTCCAA+TGG - chr7_3:12929095-12929114 Msa1093260:intron 45.0%
GGAAAATCTTGGGCACTTGA+TGG + chr7_3:12929153-12929172 None:intergenic 45.0%
TCCACCTGGAAAACATGTCT+TGG - chr7_3:12929170-12929189 Msa1093260:intron 45.0%
! ACTGCCAAGACATGTTTTCC+AGG + chr7_3:12929177-12929196 None:intergenic 45.0%
CATGTCTTGGCAGTTTATCC+AGG - chr7_3:12929183-12929202 Msa1093260:intron 45.0%
CATCGAACTTACATGTGGCA+TGG + chr7_3:12929339-12929358 None:intergenic 45.0%
GGAGTCATCGAACTTACATG+TGG + chr7_3:12929344-12929363 None:intergenic 45.0%
TGCTAATGTGCCCAAAGTCT+AGG - chr7_3:12929788-12929807 Msa1093260:intron 45.0%
GCTAATGTGCCCAAAGTCTA+GGG - chr7_3:12929789-12929808 Msa1093260:intron 45.0%
ATGTTTAGGCAATGGGGATG+TGG + chr7_3:12930310-12930329 None:intergenic 45.0%
!!! CTTTTTTTTTTTTTTTTTTT+AGG + chr7_3:12923067-12923086 None:intergenic 5.0%
!! AATTAGAAAAAAATTAAATT+AGG - chr7_3:12923092-12923111 Msa1093260:three_prime_UTR 5.0%
!! AATTAAAAAAGTTATTAAAT+TGG - chr7_3:12926208-12926227 Msa1093260:CDS 5.0%
!! ATTAAAAAAGTTATTAAATT+GGG - chr7_3:12926209-12926228 Msa1093260:CDS 5.0%
CGGGGACATAAGCTATCATG+TGG + chr7_3:12923801-12923820 None:intergenic 50.0%
TCGGCAGTGTCAGTTGAGTT+AGG + chr7_3:12924185-12924204 None:intergenic 50.0%
TGAGGTCAGAGCCACAATTG+CGG - chr7_3:12925205-12925224 Msa1093260:intron 50.0%
CTTGATGTCTTGCTTCCTCC+GGG - chr7_3:12926073-12926092 Msa1093260:intron 50.0%
CTTCTTCGTGGTTGTCCTTG+CGG + chr7_3:12926100-12926119 None:intergenic 50.0%
TGAGGCTTGTGCCAGTCTTA+AGG - chr7_3:12926721-12926740 Msa1093260:CDS 50.0%
GAGGCTTGTGCCAGTCTTAA+GGG - chr7_3:12926722-12926741 Msa1093260:CDS 50.0%
TGCCAGTCTTAAGGGTGAAC+AGG - chr7_3:12926730-12926749 Msa1093260:CDS 50.0%
TGCCTGTTCACCCTTAAGAC+TGG + chr7_3:12926735-12926754 None:intergenic 50.0%
CAACTAGGGGACTTAGGGTA+AGG - chr7_3:12927384-12927403 Msa1093260:intron 50.0%
CTGCTGTCTTCATCATCACC+AGG + chr7_3:12928315-12928334 None:intergenic 50.0%
! GGTGATGATGAAGACAGCAG+TGG - chr7_3:12928315-12928334 Msa1093260:intron 50.0%
ATGAAGACAGCAGTGGCCAA+AGG - chr7_3:12928322-12928341 Msa1093260:intron 50.0%
GGCATGAGATGGTGAAACTG+TGG - chr7_3:12928730-12928749 Msa1093260:intron 50.0%
! AGTGCCCAAGATTTTCCACC+TGG - chr7_3:12929156-12929175 Msa1093260:intron 50.0%
! GCCAAGACATGTTTTCCAGG+TGG + chr7_3:12929174-12929193 None:intergenic 50.0%
AGTTGTTCAAGGCCATCGCA+GGG - chr7_3:12929230-12929249 Msa1093260:intron 50.0%
AAGACGGGTCTCTACCTCAA+AGG - chr7_3:12930017-12930036 Msa1093260:intron 50.0%
AGAGGAACCACTGTGTGGAA+GGG + chr7_3:12930049-12930068 None:intergenic 50.0%
CTGCGATCACGTTTCGGTTG+TGG - chr7_3:12924394-12924413 Msa1093260:intron 55.0%
CGGGGAATCATGGTCCCATA+TGG - chr7_3:12925140-12925159 Msa1093260:intron 55.0%
GCGGTCACGAGTAGCCATAT+GGG + chr7_3:12925157-12925176 None:intergenic 55.0%
ATGCGTCCACGACCAAAACG+CGG + chr7_3:12925176-12925195 None:intergenic 55.0%
CAGAGCCACAATTGCGGTCT+CGG - chr7_3:12925211-12925230 Msa1093260:intron 55.0%
AGAGCCACAATTGCGGTCTC+GGG - chr7_3:12925212-12925231 Msa1093260:intron 55.0%
ACATCCCGAGACCGCAATTG+TGG + chr7_3:12925219-12925238 None:intergenic 55.0%
CCAGGCTTCTCAACCACTTC+AGG + chr7_3:12925697-12925716 None:intergenic 55.0%
CCTGAAGTGGTTGAGAAGCC+TGG - chr7_3:12925694-12925713 Msa1093260:intron 55.0%
CACGCCGCGTAATGCTGATA+AGG - chr7_3:12927154-12927173 Msa1093260:intron 55.0%
GGTTTGCCTTCTGCAGTCCA+AGG - chr7_3:12927712-12927731 Msa1093260:intron 55.0%
TTGCCTTCTGCAGTCCAAGG+TGG - chr7_3:12927715-12927734 Msa1093260:intron 55.0%
TGCCTTCTGCAGTCCAAGGT+GGG - chr7_3:12927716-12927735 Msa1093260:intron 55.0%
ATGGACCGCAGCCGTAATTG+CGG + chr7_3:12927981-12928000 None:intergenic 55.0%
TCCTCAGGACCCAGTATGCA+TGG - chr7_3:12928078-12928097 Msa1093260:intron 55.0%
CCTCAGGACCCAGTATGCAT+GGG - chr7_3:12928079-12928098 Msa1093260:intron 55.0%
GAGTAGACTCTTGCCTTCGG+TGG + chr7_3:12928564-12928583 None:intergenic 55.0%
CAGTTGTTCAAGGCCATCGC+AGG - chr7_3:12929229-12929248 Msa1093260:intron 55.0%
!! TGGAAGGGCACTGTCCTTTG+AGG + chr7_3:12930034-12930053 None:intergenic 55.0%
CAGAGGAACCACTGTGTGGA+AGG + chr7_3:12930050-12930069 None:intergenic 55.0%
ACAGTGGTTCCTCTGCCAGA+AGG - chr7_3:12930055-12930074 Msa1093260:intron 55.0%
TGACGATGTCCTTCTGGCAG+AGG + chr7_3:12930067-12930086 None:intergenic 55.0%
CGCGGTCACGAGTAGCCATA+TGG + chr7_3:12925158-12925177 None:intergenic 60.0%
! GGCTACTCGTGACCGCGTTT+TGG - chr7_3:12925161-12925180 Msa1093260:intron 60.0%
!! TCGTGACCGCGTTTTGGTCG+TGG - chr7_3:12925167-12925186 Msa1093260:intron 60.0%
GTCCAAGGTGGGCGCAATGA+AGG - chr7_3:12927727-12927746 Msa1093260:intron 60.0%
CAAGGTGGGCGCAATGAAGG+CGG - chr7_3:12927730-12927749 Msa1093260:intron 60.0%
AAGGTGGGCGCAATGAAGGC+GGG - chr7_3:12927731-12927750 Msa1093260:intron 60.0%
CCCATGCATACTGGGTCCTG+AGG + chr7_3:12928082-12928101 None:intergenic 60.0%
CTGCATGCGAAAGCCACCGA+AGG - chr7_3:12928548-12928567 Msa1093260:intron 60.0%
GACAGTGCCCTTCCACACAG+TGG - chr7_3:12930039-12930058 Msa1093260:intron 60.0%
CTGGCAGAGGAACCACTGTG+TGG + chr7_3:12930054-12930073 None:intergenic 60.0%
TTGCTTCCTCCGGGACCGCA+AGG - chr7_3:12926082-12926101 Msa1093260:intron 65.0%
CGTGGTTGTCCTTGCGGTCC+CGG + chr7_3:12926094-12926113 None:intergenic 65.0%
CGCCCACCTTGGACTGCAGA+AGG + chr7_3:12927721-12927740 None:intergenic 65.0%
CGCCTTCATTGCGCCCACCT+TGG + chr7_3:12927732-12927751 None:intergenic 65.0%
GGCGCAATGAAGGCGGGTAG+AGG - chr7_3:12927737-12927756 Msa1093260:intron 65.0%
GGCGACCGCAATTACGGCTG+CGG - chr7_3:12927973-12927992 Msa1093260:intron 65.0%
GGTTGTCCTTGCGGTCCCGG+AGG + chr7_3:12926091-12926110 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 12922931 12930478 12922931 ID=Msa1093260;Name=Msa1093260
chr7_3 mRNA 12922931 12930478 12922931 ID=Msa1093260-mRNA-1;Parent=Msa1093260;Name=Msa1093260-mRNA-1;_AED=0.11;_eAED=0.11;_QI=275|0.87|0.77|1|1|1|9|388|271
chr7_3 exon 12922931 12923421 12922931 ID=Msa1093260-mRNA-1:exon:3047;Parent=Msa1093260-mRNA-1
chr7_3 exon 12923963 12923976 12923963 ID=Msa1093260-mRNA-1:exon:3046;Parent=Msa1093260-mRNA-1
chr7_3 exon 12924158 12924311 12924158 ID=Msa1093260-mRNA-1:exon:3045;Parent=Msa1093260-mRNA-1
chr7_3 exon 12925066 12925119 12925066 ID=Msa1093260-mRNA-1:exon:3044;Parent=Msa1093260-mRNA-1
chr7_3 exon 12926184 12926265 12926184 ID=Msa1093260-mRNA-1:exon:3043;Parent=Msa1093260-mRNA-1
chr7_3 exon 12926654 12926767 12926654 ID=Msa1093260-mRNA-1:exon:3042;Parent=Msa1093260-mRNA-1
chr7_3 exon 12927285 12927361 12927285 ID=Msa1093260-mRNA-1:exon:3041;Parent=Msa1093260-mRNA-1
chr7_3 exon 12927624 12927717 12927624 ID=Msa1093260-mRNA-1:exon:3040;Parent=Msa1093260-mRNA-1
chr7_3 exon 12930080 12930478 12930080 ID=Msa1093260-mRNA-1:exon:3039;Parent=Msa1093260-mRNA-1
chr7_3 five_prime_UTR 12930204 12930478 12930204 ID=Msa1093260-mRNA-1:five_prime_utr;Parent=Msa1093260-mRNA-1
chr7_3 CDS 12930080 12930203 12930080 ID=Msa1093260-mRNA-1:cds;Parent=Msa1093260-mRNA-1
chr7_3 CDS 12927624 12927717 12927624 ID=Msa1093260-mRNA-1:cds;Parent=Msa1093260-mRNA-1
chr7_3 CDS 12927285 12927361 12927285 ID=Msa1093260-mRNA-1:cds;Parent=Msa1093260-mRNA-1
chr7_3 CDS 12926654 12926767 12926654 ID=Msa1093260-mRNA-1:cds;Parent=Msa1093260-mRNA-1
chr7_3 CDS 12926184 12926265 12926184 ID=Msa1093260-mRNA-1:cds;Parent=Msa1093260-mRNA-1
chr7_3 CDS 12925066 12925119 12925066 ID=Msa1093260-mRNA-1:cds;Parent=Msa1093260-mRNA-1
chr7_3 CDS 12924158 12924311 12924158 ID=Msa1093260-mRNA-1:cds;Parent=Msa1093260-mRNA-1
chr7_3 CDS 12923963 12923976 12923963 ID=Msa1093260-mRNA-1:cds;Parent=Msa1093260-mRNA-1
chr7_3 CDS 12923319 12923421 12923319 ID=Msa1093260-mRNA-1:cds;Parent=Msa1093260-mRNA-1
chr7_3 three_prime_UTR 12922931 12923318 12922931 ID=Msa1093260-mRNA-1:three_prime_utr;Parent=Msa1093260-mRNA-1
Gene Sequence

>Msa1093260

ATGTCGTCTTCTTCACCAGACATTGTTTCAATTTTGGAGAATTCGAAGGAATTGGATCGGTTAAGGAAAGATCAGGAAGATGTTCTCTCTGAAATCAATAAGCTTCACAAAAAGCTTCAAACCACTCCTGAAGTGGTTGAGAAGCCTGGAGATAACTCACTAGCAAAGCTGAAAATGTTGTATACTCAAGCAAAAGATCTTTCAGACAATGAAGCAAATCTTTCCACTATGTTGATAAGCCAACTTGATGTCTTGCTTCCTCCGGGACCGCAAGGACAACCACGAAGAAGATTAGAAGGCAATGAGCAGAAAAGGAAACGAGTGAAAACAGAGTCAGACATTTCAAGGTTAACTCCGAGTATGCGAAATCAACTTGAGGCTTGTGCCAGTCTTAAGGGTGAACAGGCATCAGCTAGGGTCACGCCGCGTAATGCTGATAAGGACGAATGGTTTGTTGTAAAAGTGATTCATTTTGATAAGGAATTAAAGGAATTTGAAGTACTTGATGAGGAACCTGGTGATGATGAAGACAGCAGTGGCCAAAGACAGTACAAGCTTCCAATGGGACATATCATTCCTTTCCCTAAGAGTAATGATCCATCAAGTGCCCAAGATTTTCCACCTGGAAAACATGTCTTGGCAGTTTATCCAGGAACTACTGCACTTTATAAAGCAACAGTTGTTCAAGGCCATCGCAGGAGGAAGACAGATGATTATGTGTTGGAATTTGATGATGACGAAGAAGACGGGTCTCTACCTCAAAGGACAGTGCCCTTCCACACAGTGGTTCCTCTGCCAGAAGGACATCGTCAATAA

Protein sequence

>Msa1093260

MSSSSPDIVSILENSKELDRLRKDQEDVLSEINKLHKKLQTTPEVVEKPGDNSLAKLKMLYTQAKDLSDNEANLSTMLISQLDVLLPPGPQGQPRRRLEGNEQKRKRVKTESDISRLTPSMRNQLEACASLKGEQASARVTPRNADKDEWFVVKVIHFDKELKEFEVLDEEPGDDEDSSGQRQYKLPMGHIIPFPKSNDPSSAQDFPPGKHVLAVYPGTTALYKATVVQGHRRRKTDDYVLEFDDDEEDGSLPQRTVPFHTVVPLPEGHRQ*