Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155680 | XP_013467035.1 | 92.901 | 324 | 6 | 1 | 1 | 307 | 1 | 324 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155680 | sp|Q5XEP2|HSOP2_ARATH | 32.203 | 118 | 63 | 1 | 15 | 115 | 386 | 503 | 2.71e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155680 | A0A072VSG1 | 92.901 | 324 | 6 | 1 | 1 | 307 | 1 | 324 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030200 | Msa0155680 | 0.816055 | 6.734395e-52 | -8.615850e-47 |
| Msa0032430 | Msa0155680 | 0.819626 | 1.052290e-52 | -8.615850e-47 |
| Msa0054480 | Msa0155680 | 0.801035 | 1.088802e-48 | -8.615850e-47 |
| Msa0070700 | Msa0155680 | 0.810590 | 1.068868e-50 | -8.615850e-47 |
| Msa0115400 | Msa0155680 | 0.803091 | 4.112118e-49 | -8.615850e-47 |
| Msa0118590 | Msa0155680 | 0.806110 | 9.646768e-50 | -8.615850e-47 |
| Msa0144370 | Msa0155680 | 0.808825 | 2.560396e-50 | -8.615850e-47 |
| Msa0155680 | Msa0170200 | 0.809867 | 1.529942e-50 | -8.615850e-47 |
| Msa0155680 | Msa0172070 | 0.819138 | 1.358997e-52 | -8.615850e-47 |
| Msa0155680 | Msa0335730 | 0.841322 | 5.099267e-58 | -8.615850e-47 |
| Msa0155680 | Msa0585560 | 0.800176 | 1.629654e-48 | -8.615850e-47 |
| Msa0155680 | Msa0716830 | 0.825802 | 3.842378e-54 | -8.615850e-47 |
| Msa0155680 | Msa0862530 | 0.800894 | 1.163292e-48 | -8.615850e-47 |
| Msa0155680 | Msa1029490 | 0.804041 | 2.613175e-49 | -8.615850e-47 |
| Msa0155680 | Msa1153060 | 0.809167 | 2.162674e-50 | -8.615850e-47 |
| Msa0155680 | Msa1260030 | 0.802644 | 5.086525e-49 | -8.615850e-47 |
| Msa0155680 | Msa1300380 | 0.800370 | 1.487882e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155680 | MtrunA17_Chr1g0166441 | 92.901 | 324 | 6 | 1 | 1 | 307 | 1 | 324 | 0.0 | 612 |
| Msa0155680 | MtrunA17_Chr5g0398901 | 32.203 | 118 | 63 | 1 | 15 | 115 | 396 | 513 | 1.34e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0155680 | AT1G04190.1 | 68.868 | 318 | 82 | 1 | 7 | 307 | 11 | 328 | 3.81e-164 | 459 |
| Msa0155680 | AT1G62740.1 | 32.203 | 118 | 63 | 1 | 15 | 115 | 386 | 503 | 2.75e-14 | 73.6 |
| Msa0155680 | AT1G12270.1 | 31.356 | 118 | 64 | 1 | 15 | 115 | 387 | 504 | 1.69e-13 | 71.2 |
| Msa0155680 | AT4G12400.1 | 30.508 | 118 | 65 | 1 | 15 | 115 | 373 | 490 | 2.20e-12 | 67.8 |
| Msa0155680 | AT4G12400.1 | 41.892 | 74 | 43 | 0 | 15 | 88 | 6 | 79 | 8.18e-11 | 63.2 |
| Msa0155680 | AT4G12400.2 | 30.508 | 118 | 65 | 1 | 15 | 115 | 373 | 490 | 2.29e-12 | 67.8 |
| Msa0155680 | AT4G12400.2 | 41.892 | 74 | 43 | 0 | 15 | 88 | 6 | 79 | 7.75e-11 | 63.2 |
| Msa0155680 | AT5G10090.1 | 26.119 | 134 | 70 | 3 | 6 | 110 | 455 | 588 | 8.35e-12 | 66.2 |
| Msa0155680 | AT1G78120.1 | 33.898 | 118 | 66 | 3 | 13 | 118 | 161 | 278 | 2.07e-11 | 64.7 |
| Msa0155680 | AT1G78120.2 | 33.898 | 118 | 66 | 3 | 13 | 118 | 161 | 278 | 2.27e-11 | 64.7 |
| Msa0155680 | AT3G14950.1 | 42.045 | 88 | 47 | 2 | 7 | 91 | 255 | 341 | 2.48e-11 | 64.7 |
| Msa0155680 | AT5G65160.1 | 28.070 | 114 | 64 | 2 | 17 | 112 | 476 | 589 | 5.02e-11 | 63.9 |
Find 69 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCAGGGATCCAGAAATTT+TGG | 0.181636 | 1_4:-21230232 | Msa0155680:intron |
| TAATGTACTTGACTGATATT+TGG | 0.182612 | 1_4:-21230153 | Msa0155680:three_prime_UTR |
| AAACAGCTGCTGTGTGTTTC+TGG | 0.204324 | 1_4:+21231282 | None:intergenic |
| TGATTGCTCTTGATCTATTC+TGG | 0.226000 | 1_4:-21229959 | Msa0155680:three_prime_UTR |
| TTGTAGGGTTTACTAAGTTT+TGG | 0.235268 | 1_4:+21236253 | None:intergenic |
| GCGCCAACGTCCAAAATTTC+TGG | 0.288254 | 1_4:+21230222 | None:intergenic |
| GTGATTGATATTAAATCTTC+TGG | 0.293147 | 1_4:-21229852 | Msa0155680:three_prime_UTR |
| ACAATTGTACTAACCAATTC+AGG | 0.305169 | 1_4:+21233513 | None:intergenic |
| TTCAATACTTCTTGACTTTG+TGG | 0.320951 | 1_4:+21233642 | None:intergenic |
| ACCTTATCAATATTCACAAT+TGG | 0.335540 | 1_4:+21231510 | None:intergenic |
| AAATCTTCTGGTTAATTCTC+TGG | 0.350459 | 1_4:-21229840 | Msa0155680:three_prime_UTR |
| CCTTATCAATATTCACAATT+GGG | 0.352170 | 1_4:+21231511 | None:intergenic |
| GCTTCCATTTCCTTGATCCT+TGG | 0.353756 | 1_4:+21230470 | None:intergenic |
| GCTTGCTATCTTTAACTAGT+TGG | 0.355732 | 1_4:+21233601 | None:intergenic |
| TCAATACTTCTTGACTTTGT+GGG | 0.357106 | 1_4:+21233643 | None:intergenic |
| CTCTTGCAGTCTGAAAAGTA+TGG | 0.358770 | 1_4:-21231678 | Msa0155680:intron |
| AGTTTACTTTCTTCCTGATA+AGG | 0.380004 | 1_4:-21231559 | Msa0155680:CDS |
| CTCAAGAGCAGCCTGCTTAG+TGG | 0.383994 | 1_4:-21231226 | Msa0155680:CDS |
| AGATACACTGAAGCCTGAAT+TGG | 0.385448 | 1_4:-21233526 | Msa0155680:intron |
| TCAGTCAAGTACATTAAGAT+TGG | 0.390706 | 1_4:+21230160 | None:intergenic |
| AGAAATTATCCAAGCTTTCA+AGG | 0.396625 | 1_4:-21230014 | Msa0155680:three_prime_UTR |
| TATTCCCAGTTCAAATGAAA+AGG | 0.399079 | 1_4:-21230386 | Msa0155680:CDS |
| TCTTGATCTATTCTGGAAAC+TGG | 0.399277 | 1_4:-21229952 | Msa0155680:three_prime_UTR |
| CTTCAGTGTATCTAAATGTT+TGG | 0.401626 | 1_4:+21233536 | None:intergenic |
| TGCTGCAGCATTGCTACAAT+TGG | 0.401785 | 1_4:-21234219 | Msa0155680:CDS |
| TAAGGTTAATGTTTGTGATT+CGG | 0.414532 | 1_4:+21236219 | None:intergenic |
| TCAGCATACTGCCTAAGAAA+TGG | 0.415722 | 1_4:+21231258 | None:intergenic |
| AACAGTGATAAACAAACTAA+TGG | 0.429194 | 1_4:+21229929 | None:intergenic |
| AATGCAACTCCTTGAAAGCT+TGG | 0.432933 | 1_4:+21230005 | None:intergenic |
| AAATTCTGAGATATCTTTGA+AGG | 0.440091 | 1_4:-21236135 | Msa0155680:CDS |
| CTATACTCAAGCCATCAAAA+AGG | 0.441533 | 1_4:-21236060 | Msa0155680:CDS |
| GAGATATCTTTGAAGGATCA+AGG | 0.445065 | 1_4:-21236128 | Msa0155680:CDS |
| CCCAATTGTGAATATTGATA+AGG | 0.468621 | 1_4:-21231511 | Msa0155680:intron |
| TTTGGAATGTAAAATAATGC+TGG | 0.470302 | 1_4:-21230070 | Msa0155680:three_prime_UTR |
| AATTAAATTAAAACCCGAAT+GGG | 0.475131 | 1_4:-21234159 | Msa0155680:CDS |
| ATTCCCAGTTCAAATGAAAA+GGG | 0.487057 | 1_4:-21230385 | Msa0155680:CDS |
| TCTGGAAAGGCCAAGGATCA+AGG | 0.487214 | 1_4:-21230480 | Msa0155680:CDS |
| CTCCTTCCGTGCGAAAATTG+TGG | 0.490264 | 1_4:-21230411 | Msa0155680:CDS |
| AAGGCCAAGGATCAAGGAAA+TGG | 0.491879 | 1_4:-21230474 | Msa0155680:CDS |
| AGTATGGATCTGAAGAAAGC+TGG | 0.495429 | 1_4:-21231662 | Msa0155680:CDS |
| GTGTGTTTCTGGTGACTCAA+AGG | 0.501172 | 1_4:+21231293 | None:intergenic |
| ATTAAAACCCGAATGGGAAA+AGG | 0.501785 | 1_4:-21234153 | Msa0155680:intron |
| CAGTCAAGTACATTAAGATT+GGG | 0.505176 | 1_4:+21230161 | None:intergenic |
| TGGAAGCATGCACAGAATGA+TGG | 0.537108 | 1_4:-21230454 | Msa0155680:CDS |
| TGGAGACTGCTGTAAAATCA+TGG | 0.542267 | 1_4:-21231608 | Msa0155680:CDS |
| CTTATCAATATTCACAATTG+GGG | 0.543694 | 1_4:+21231512 | None:intergenic |
| AGCTATCTGAAAGGAAGCTA+AGG | 0.545730 | 1_4:+21233677 | None:intergenic |
| CTCATTCCTCGTCGAGACCA+TGG | 0.548485 | 1_4:-21231628 | Msa0155680:CDS |
| TAGTTTGTTTATCACTGTTG+AGG | 0.548826 | 1_4:-21229925 | Msa0155680:three_prime_UTR |
| ATATGCCAAAAGAAAACAAA+GGG | 0.550227 | 1_4:-21236296 | None:intergenic |
| TGTGTCTGCCAGGTCTGGAA+AGG | 0.560424 | 1_4:-21230493 | Msa0155680:intron |
| CCAAAGAGACAACAAAACAT+AGG | 0.562668 | 1_4:+21230088 | None:intergenic |
| AAACATCATTGCTTATCCAC+AGG | 0.566500 | 1_4:-21231196 | Msa0155680:intron |
| TAGCAAGCGAGCTCAAGAAG+TGG | 0.567037 | 1_4:-21233586 | Msa0155680:CDS |
| TGCCAGGTCTGGAAAGGCCA+AGG | 0.570453 | 1_4:-21230487 | Msa0155680:intron |
| CAATTAAATTAAAACCCGAA+TGG | 0.579725 | 1_4:-21234160 | Msa0155680:CDS |
| AAACAAAGAAAGATCATCGA+TGG | 0.580639 | 1_4:-21236177 | Msa0155680:exon |
| TCGATGGCAGAAACAAAAGA+AGG | 0.585916 | 1_4:-21236161 | Msa0155680:CDS |
| AAAAGGGACAGATACTGTGC+AGG | 0.590409 | 1_4:-21230369 | Msa0155680:intron |
| ATGGCATGAAACTTCTTCAG+TGG | 0.598632 | 1_4:-21231589 | Msa0155680:CDS |
| GCCAAAAGAAAACAAAGGGA+AGG | 0.603994 | 1_4:-21236292 | None:intergenic |
| ATTTCTTAGGCAGTATGCTG+AGG | 0.604049 | 1_4:-21231256 | Msa0155680:CDS |
| GAGGCAAGTTTGTAGACAGT+AGG | 0.609601 | 1_4:-21229906 | Msa0155680:three_prime_UTR |
| TCAAGTACATTAAGATTGGG+AGG | 0.637826 | 1_4:+21230164 | None:intergenic |
| TATGAGATCGAATGTTGACA+TGG | 0.643506 | 1_4:-21233559 | Msa0155680:CDS |
| TTATCAATATTCACAATTGG+GGG | 0.644295 | 1_4:+21231513 | None:intergenic |
| ATACTGCGAAGCTATCTGAA+AGG | 0.645570 | 1_4:+21233668 | None:intergenic |
| AATATGCCAAAAGAAAACAA+AGG | 0.653889 | 1_4:-21236297 | None:intergenic |
| CAGTCTCCATGGTCTCGACG+AGG | 0.701435 | 1_4:+21231622 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAGATATGTATAAAT+AGG | - | chr1_4:21235043-21235062 | Msa0155680:intron | 10.0% |
| !!! | TTTTGTTTTTTTGTGTTTTA+AGG | + | chr1_4:21229925-21229944 | None:intergenic | 15.0% |
| !! | ATTTGAAAGAAAAAAGAAAA+GGG | + | chr1_4:21230121-21230140 | None:intergenic | 15.0% |
| !! | AATTTGAAAGAAAAAAGAAA+AGG | + | chr1_4:21230122-21230141 | None:intergenic | 15.0% |
| !!! | ATTTTGAATCTTTTTTCATT+TGG | - | chr1_4:21230139-21230158 | Msa0155680:three_prime_UTR | 15.0% |
| !!! | TTTTGAATCTTTTTTCATTT+GGG | - | chr1_4:21230140-21230159 | Msa0155680:three_prime_UTR | 15.0% |
| !!! | AAGTGTTTTTATTATAGTTT+CGG | - | chr1_4:21230314-21230333 | Msa0155680:intron | 15.0% |
| !! | ATTGACAATTATAATAATAG+TGG | + | chr1_4:21231748-21231767 | None:intergenic | 15.0% |
| !!! | GTTGAAAAATGTATTTTTAA+GGG | + | chr1_4:21232038-21232057 | None:intergenic | 15.0% |
| !! | AAAAATTATTCAAAAACTAG+AGG | + | chr1_4:21232860-21232879 | None:intergenic | 15.0% |
| !!! | TTATTTTAGACTATTGAATA+GGG | + | chr1_4:21232928-21232947 | None:intergenic | 15.0% |
| !!! | TTTATTTTAGACTATTGAAT+AGG | + | chr1_4:21232929-21232948 | None:intergenic | 15.0% |
| !!! | TTCAATAGTCTAAAATAAAA+CGG | - | chr1_4:21232930-21232949 | Msa0155680:intron | 15.0% |
| !! | ATTAAAGAAATTAACATAGA+AGG | + | chr1_4:21232991-21233010 | None:intergenic | 15.0% |
| !! | TGGTAATCTTTATATAATTT+GGG | + | chr1_4:21233218-21233237 | None:intergenic | 15.0% |
| !! | AATTAGAATGTTTCTTTAAA+AGG | + | chr1_4:21233382-21233401 | None:intergenic | 15.0% |
| !! | AAATAAATTGTATTATAGTG+TGG | + | chr1_4:21233435-21233454 | None:intergenic | 15.0% |
| !! | AAGGAATTTGAAAAATTAAT+AGG | + | chr1_4:21234648-21234667 | None:intergenic | 15.0% |
| !!! | AAAAGAAAGTATAAATCAAA+AGG | + | chr1_4:21235199-21235218 | None:intergenic | 15.0% |
| !! | CGAATATTTATAAAAATGAT+AGG | - | chr1_4:21235993-21236012 | Msa0155680:intron | 15.0% |
| !!! | AAGTTAGAATTTGTAGATTT+TGG | - | chr1_4:21230918-21230937 | Msa0155680:intron | 20.0% |
| !!! | AGAAAATTCATTTTATGTAC+TGG | - | chr1_4:21231324-21231343 | Msa0155680:intron | 20.0% |
| !!! | GAAAATTCATTTTATGTACT+GGG | - | chr1_4:21231325-21231344 | Msa0155680:intron | 20.0% |
| !! | ATTTCCTTTACAAGTTATAT+AGG | - | chr1_4:21231610-21231629 | Msa0155680:CDS | 20.0% |
| !!! | TATTTTTTTAGCAAATTGAG+TGG | - | chr1_4:21231770-21231789 | Msa0155680:intron | 20.0% |
| !! | GCATAAGATATTTATGAATT+GGG | + | chr1_4:21231845-21231864 | None:intergenic | 20.0% |
| !! | AGCATAAGATATTTATGAAT+TGG | + | chr1_4:21231846-21231865 | None:intergenic | 20.0% |
| !! | AATTAAATTAAAACCCGAAT+GGG | - | chr1_4:21231964-21231983 | Msa0155680:intron | 20.0% |
| !!! | CGTTGAAAAATGTATTTTTA+AGG | + | chr1_4:21232039-21232058 | None:intergenic | 20.0% |
| !! | TGATCAAAAGTTAAGAAAAA+AGG | + | chr1_4:21232163-21232182 | None:intergenic | 20.0% |
| !! | ATATAGGATATGATATGTTT+AGG | + | chr1_4:21233136-21233155 | None:intergenic | 20.0% |
| !! | TATTTATTTGATACGAGTAT+CGG | + | chr1_4:21233194-21233213 | None:intergenic | 20.0% |
| !! | GTGGTAATCTTTATATAATT+TGG | + | chr1_4:21233219-21233238 | None:intergenic | 20.0% |
| !!! | AATCAATTTGGTTTTATACT+CGG | + | chr1_4:21233317-21233336 | None:intergenic | 20.0% |
| !! | ATATTGAAGAAGATAAAGAA+AGG | + | chr1_4:21234667-21234686 | None:intergenic | 20.0% |
| !! | TAAAATCATAATACCATACA+GGG | + | chr1_4:21234783-21234802 | None:intergenic | 20.0% |
| !! | TTAAAATCATAATACCATAC+AGG | + | chr1_4:21234784-21234803 | None:intergenic | 20.0% |
| !! | TCTTAGTTCATTAATTATGA+AGG | - | chr1_4:21234962-21234981 | Msa0155680:intron | 20.0% |
| !! | TTAGGGAAAATATTAGTTAA+TGG | - | chr1_4:21235017-21235036 | Msa0155680:intron | 20.0% |
| !! | TAGGGAAAATATTAGTTAAT+GGG | - | chr1_4:21235018-21235037 | Msa0155680:intron | 20.0% |
| !! | TAAAGATATGTATAAATAGG+AGG | - | chr1_4:21235046-21235065 | Msa0155680:intron | 20.0% |
| !!! | TGTATTTTGAATGGAAATAA+TGG | + | chr1_4:21235379-21235398 | None:intergenic | 20.0% |
| !!! | TTTTTTGGCAATTATTTTCA+TGG | - | chr1_4:21236139-21236158 | Msa0155680:CDS | 20.0% |
| ! | TAAGGTTAATGTTTGTGATT+CGG | + | chr1_4:21229907-21229926 | None:intergenic | 25.0% |
| !!! | AAATTCTGAGATATCTTTGA+AGG | - | chr1_4:21229988-21230007 | Msa0155680:three_prime_UTR | 25.0% |
| ! | AACTTATGAAAACAGCTTAT+AGG | - | chr1_4:21230479-21230498 | Msa0155680:CDS | 25.0% |
| ! | CATTTATATGATAACCACTT+GGG | - | chr1_4:21230561-21230580 | Msa0155680:intron | 25.0% |
| ! | ATTTATATGATAACCACTTG+GGG | - | chr1_4:21230562-21230581 | Msa0155680:intron | 25.0% |
| !!! | TGTATGTTTGGTTTCAATTT+TGG | - | chr1_4:21230795-21230814 | Msa0155680:intron | 25.0% |
| ! | TGGATAAATTCATGTAAAAG+TGG | + | chr1_4:21230984-21231003 | None:intergenic | 25.0% |
| ! | AAGGTAAAGTGATTTATGAT+TGG | + | chr1_4:21231004-21231023 | None:intergenic | 25.0% |
| ! | TTATAGCATAAGTGAATGTT+TGG | + | chr1_4:21231097-21231116 | None:intergenic | 25.0% |
| ! | CAATTAAATTAAAACCCGAA+TGG | - | chr1_4:21231963-21231982 | Msa0155680:intron | 25.0% |
| ! | CAATAACTAAAACAATTAGC+AGG | + | chr1_4:21232391-21232410 | None:intergenic | 25.0% |
| ! | TCACAAAATTTCATATGTGT+CGG | + | chr1_4:21232721-21232740 | None:intergenic | 25.0% |
| !! | ATATGAAATTTTGTGAAGCA+CGG | - | chr1_4:21232725-21232744 | Msa0155680:intron | 25.0% |
| ! | TATTCAAAAACTAGAGGTTT+CGG | + | chr1_4:21232854-21232873 | None:intergenic | 25.0% |
| ! | AAGAAAAAGAAGACATTGAT+AGG | + | chr1_4:21232957-21232976 | None:intergenic | 25.0% |
| ! | CGTCATTTCTTAGAAAATAT+AGG | + | chr1_4:21233152-21233171 | None:intergenic | 25.0% |
| !!! | TTTTCTAAGAAATGACGTAT+CGG | - | chr1_4:21233155-21233174 | Msa0155680:intron | 25.0% |
| ! | ATATAAAGATTACCACTATG+TGG | - | chr1_4:21233223-21233242 | Msa0155680:intron | 25.0% |
| ! | TATAAAGATTACCACTATGT+GGG | - | chr1_4:21233224-21233243 | Msa0155680:intron | 25.0% |
| ! | AAAACTACGGATAATCAATT+TGG | + | chr1_4:21233329-21233348 | None:intergenic | 25.0% |
| !! | AAATTGATTATCCGTAGTTT+TGG | - | chr1_4:21233328-21233347 | Msa0155680:intron | 25.0% |
| ! | TGAAAAAGAAACCAAAACTA+CGG | + | chr1_4:21233342-21233361 | None:intergenic | 25.0% |
| ! | ATTGTATTATAGTGTGGATT+AGG | + | chr1_4:21233429-21233448 | None:intergenic | 25.0% |
| ! | TTACTCACTTAACAAAGTAA+CGG | - | chr1_4:21233704-21233723 | Msa0155680:intron | 25.0% |
| ! | CCAAGTACAAAATTCATAAA+AGG | + | chr1_4:21233848-21233867 | None:intergenic | 25.0% |
| !! | CCTTTTATGAATTTTGTACT+TGG | - | chr1_4:21233845-21233864 | Msa0155680:intron | 25.0% |
| ! | AATTACCAAACAAATAGCTT+AGG | - | chr1_4:21233944-21233963 | Msa0155680:intron | 25.0% |
| !! | TAACTTTTGTGTGTGATTTT+TGG | + | chr1_4:21234040-21234059 | None:intergenic | 25.0% |
| ! | GAGTTATTTGTATGACAAAA+AGG | - | chr1_4:21234163-21234182 | Msa0155680:CDS | 25.0% |
| ! | AGCATTAATTGTTGAATTTG+GGG | + | chr1_4:21234233-21234252 | None:intergenic | 25.0% |
| ! | GAGCATTAATTGTTGAATTT+GGG | + | chr1_4:21234234-21234253 | None:intergenic | 25.0% |
| !! | AGAGCATTAATTGTTGAATT+TGG | + | chr1_4:21234235-21234254 | None:intergenic | 25.0% |
| !!! | TTTCTGACATTTTGTTTTTC+AGG | + | chr1_4:21234277-21234296 | None:intergenic | 25.0% |
| !! | TCTCATTACTTTCTGTATTT+TGG | - | chr1_4:21234301-21234320 | Msa0155680:intron | 25.0% |
| ! | TTATCAATATTCACAATTGG+GGG | + | chr1_4:21234613-21234632 | None:intergenic | 25.0% |
| ! | CTTATCAATATTCACAATTG+GGG | + | chr1_4:21234614-21234633 | None:intergenic | 25.0% |
| ! | CCTTATCAATATTCACAATT+GGG | + | chr1_4:21234615-21234634 | None:intergenic | 25.0% |
| ! | ACCTTATCAATATTCACAAT+TGG | + | chr1_4:21234616-21234635 | None:intergenic | 25.0% |
| ! | TCTAAATATACTTGCACATT+TGG | - | chr1_4:21234707-21234726 | Msa0155680:intron | 25.0% |
| ! | CTAAATATACTTGCACATTT+GGG | - | chr1_4:21234708-21234727 | Msa0155680:intron | 25.0% |
| ! | TATAGGATAAAGAGTTAGTT+AGG | - | chr1_4:21234999-21235018 | Msa0155680:intron | 25.0% |
| ! | ATAGGATAAAGAGTTAGTTA+GGG | - | chr1_4:21235000-21235019 | Msa0155680:intron | 25.0% |
| !! | GATTTATACTTTCTTTTCCA+TGG | - | chr1_4:21235202-21235221 | Msa0155680:intron | 25.0% |
| ! | AAAAAATAGTGAGAATCAGA+GGG | + | chr1_4:21235264-21235283 | None:intergenic | 25.0% |
| ! | AAAAAAATAGTGAGAATCAG+AGG | + | chr1_4:21235265-21235284 | None:intergenic | 25.0% |
| ! | AGTAAATGGAGTATACAATT+TGG | + | chr1_4:21235308-21235327 | None:intergenic | 25.0% |
| !!! | TTGTCTTTAGAATTTTCGTT+AGG | - | chr1_4:21235442-21235461 | Msa0155680:intron | 25.0% |
| !!! | TGTCTTTAGAATTTTCGTTA+GGG | - | chr1_4:21235443-21235462 | Msa0155680:intron | 25.0% |
| ! | AAATAAGTGCATCCAAAAAA+GGG | + | chr1_4:21235791-21235810 | None:intergenic | 25.0% |
| ! | TAAATAAGTGCATCCAAAAA+AGG | + | chr1_4:21235792-21235811 | None:intergenic | 25.0% |
| ! | TAATGTACTTGACTGATATT+TGG | - | chr1_4:21235970-21235989 | Msa0155680:intron | 25.0% |
| !! | TTTGGAATGTAAAATAATGC+TGG | - | chr1_4:21236053-21236072 | Msa0155680:CDS | 25.0% |
| ! | AACAGTGATAAACAAACTAA+TGG | + | chr1_4:21236197-21236216 | None:intergenic | 25.0% |
| ! | GTGATTGATATTAAATCTTC+TGG | - | chr1_4:21236271-21236290 | Msa0155680:five_prime_UTR | 25.0% |
| ! | TGTAGGGTTTACTAAGTTTT+GGG | + | chr1_4:21229872-21229891 | None:intergenic | 30.0% |
| ! | TTGTAGGGTTTACTAAGTTT+TGG | + | chr1_4:21229873-21229892 | None:intergenic | 30.0% |
| ! | TCGGTTACAAATGTTTTGTA+GGG | + | chr1_4:21229888-21229907 | None:intergenic | 30.0% |
| ! | TTCGGTTACAAATGTTTTGT+AGG | + | chr1_4:21229889-21229908 | None:intergenic | 30.0% |
| AAACAAAGAAAGATCATCGA+TGG | - | chr1_4:21229946-21229965 | Msa0155680:three_prime_UTR | 30.0% | |
| ! | TAAAAAGTGTGGGATTTGAA+GGG | + | chr1_4:21230090-21230109 | None:intergenic | 30.0% |
| ! | TTTTCACTTGATTCAGTTGT+TGG | - | chr1_4:21230169-21230188 | Msa0155680:exon | 30.0% |
| TTTCACTTGATTCAGTTGTT+GGG | - | chr1_4:21230170-21230189 | Msa0155680:exon | 30.0% | |
| AAGTTATCATGGATAGCTTA+TGG | + | chr1_4:21230464-21230483 | None:intergenic | 30.0% | |
| !! | GCTGTTTTCATAAGTTATCA+TGG | + | chr1_4:21230475-21230494 | None:intergenic | 30.0% |
| GCATTTATATGATAACCACT+TGG | - | chr1_4:21230560-21230579 | Msa0155680:intron | 30.0% | |
| TGTTATTCATAAGCTTGTCA+AGG | - | chr1_4:21230634-21230653 | Msa0155680:intron | 30.0% | |
| TGAAACCAAACATACACTAA+GGG | + | chr1_4:21230791-21230810 | None:intergenic | 30.0% | |
| TTGAAACCAAACATACACTA+AGG | + | chr1_4:21230792-21230811 | None:intergenic | 30.0% | |
| !! | ATGTTTGGTTTCAATTTTGG+TGG | - | chr1_4:21230798-21230817 | Msa0155680:intron | 30.0% |
| !! | TGTTTGGTTTCAATTTTGGT+GGG | - | chr1_4:21230799-21230818 | Msa0155680:intron | 30.0% |
| !! | AGAGTTGATTTTGACATGTT+TGG | - | chr1_4:21230845-21230864 | Msa0155680:intron | 30.0% |
| GGATTGAACAATAAAACTCA+AGG | + | chr1_4:21230963-21230982 | None:intergenic | 30.0% | |
| AAAATTGAGTCTGGCTAAAA+GGG | + | chr1_4:21231032-21231051 | None:intergenic | 30.0% | |
| TAAAATTGAGTCTGGCTAAA+AGG | + | chr1_4:21231033-21231052 | None:intergenic | 30.0% | |
| TGATCTTGTAAAATTGAGTC+TGG | + | chr1_4:21231041-21231060 | None:intergenic | 30.0% | |
| !!! | TAAGTGAATGTTTGGTTTTG+CGG | + | chr1_4:21231089-21231108 | None:intergenic | 30.0% |
| GCTTAATTAAGTAGGAAAAG+TGG | - | chr1_4:21231171-21231190 | Msa0155680:intron | 30.0% | |
| ACAAAATCTACTAATCTGCA+AGG | + | chr1_4:21231238-21231257 | None:intergenic | 30.0% | |
| GCTAGAAGCTAATTCAAAAT+AGG | + | chr1_4:21231263-21231282 | None:intergenic | 30.0% | |
| !!! | TGGCATTGTCATCTTATTTT+CGG | - | chr1_4:21231441-21231460 | Msa0155680:intron | 30.0% |
| TTCCATAAAAATCACTGTCA+CGG | - | chr1_4:21231531-21231550 | Msa0155680:CDS | 30.0% | |
| ! | CACTCCTATATAACTTGTAA+AGG | + | chr1_4:21231617-21231636 | None:intergenic | 30.0% |
| GTGGTTAATCAATATTGACA+TGG | + | chr1_4:21231693-21231712 | None:intergenic | 30.0% | |
| AGTCAAATACAACATGAAAG+TGG | + | chr1_4:21231712-21231731 | None:intergenic | 30.0% | |
| TTTAGCAAATTGAGTGGTTT+CGG | - | chr1_4:21231776-21231795 | Msa0155680:intron | 30.0% | |
| TACATCATCATATCGTTTCA+TGG | + | chr1_4:21232116-21232135 | None:intergenic | 30.0% | |
| TTGTCAAACAGTGACTATAT+CGG | - | chr1_4:21232186-21232205 | Msa0155680:intron | 30.0% | |
| TCAATACTTCTTGACTTTGT+GGG | + | chr1_4:21232483-21232502 | None:intergenic | 30.0% | |
| TTCAATACTTCTTGACTTTG+TGG | + | chr1_4:21232484-21232503 | None:intergenic | 30.0% | |
| CTTCAGTGTATCTAAATGTT+TGG | + | chr1_4:21232590-21232609 | None:intergenic | 30.0% | |
| ACAATTGTACTAACCAATTC+AGG | + | chr1_4:21232613-21232632 | None:intergenic | 30.0% | |
| ATTGGTTAGTACAATTGTTC+TGG | - | chr1_4:21232615-21232634 | Msa0155680:intron | 30.0% | |
| TATCAATAGAGTAGTTGAAG+AGG | + | chr1_4:21232893-21232912 | None:intergenic | 30.0% | |
| TTTATATGCATGTTCTTTGC+TGG | - | chr1_4:21233023-21233042 | Msa0155680:intron | 30.0% | |
| ! | TTCTTTAAAAGGTGATTGAG+CGG | + | chr1_4:21233371-21233390 | None:intergenic | 30.0% |
| !! | TTATAGTGTGGATTAGGAAT+TGG | + | chr1_4:21233423-21233442 | None:intergenic | 30.0% |
| TTTAACAACCCATGAAAGAA+TGG | + | chr1_4:21233466-21233485 | None:intergenic | 30.0% | |
| ! | GTCAATGTCTAGAATAATGT+TGG | - | chr1_4:21233613-21233632 | Msa0155680:CDS | 30.0% |
| TAGCAAAAACACAAAAAGCA+AGG | - | chr1_4:21233641-21233660 | Msa0155680:CDS | 30.0% | |
| ACAAAAAGCAAGGTTGTTTA+AGG | - | chr1_4:21233651-21233670 | Msa0155680:CDS | 30.0% | |
| !!! | GGTTTTATTAAAAAGGTGCA+GGG | + | chr1_4:21233813-21233832 | None:intergenic | 30.0% |
| ACAAAATTCATAAAAGGAGC+CGG | + | chr1_4:21233842-21233861 | None:intergenic | 30.0% | |
| ! | GGTGCTTGATTTGAATTTAT+GGG | + | chr1_4:21233885-21233904 | None:intergenic | 30.0% |
| ! | AGGTGCTTGATTTGAATTTA+TGG | + | chr1_4:21233886-21233905 | None:intergenic | 30.0% |
| GCTTAGGAACTCTTAAAATA+AGG | - | chr1_4:21233960-21233979 | Msa0155680:intron | 30.0% | |
| TCTTAAAATAAGGTTCTGTC+TGG | - | chr1_4:21233970-21233989 | Msa0155680:intron | 30.0% | |
| CTTAAAATAAGGTTCTGTCT+GGG | - | chr1_4:21233971-21233990 | Msa0155680:intron | 30.0% | |
| TTAAAATAAGGTTCTGTCTG+GGG | - | chr1_4:21233972-21233991 | Msa0155680:intron | 30.0% | |
| AATGCTCTTAATCTAATCCA+AGG | - | chr1_4:21234099-21234118 | Msa0155680:intron | 30.0% | |
| AACACATTCAAAACTGAACA+GGG | - | chr1_4:21234197-21234216 | Msa0155680:CDS | 30.0% | |
| AATGATATGAGTAGACAGAT+AGG | + | chr1_4:21234390-21234409 | None:intergenic | 30.0% | |
| AGTTTACTTTCTTCCTGATA+AGG | - | chr1_4:21234564-21234583 | Msa0155680:intron | 30.0% | |
| CCCAATTGTGAATATTGATA+AGG | - | chr1_4:21234612-21234631 | Msa0155680:intron | 30.0% | |
| ! | TGGATAAGCAATGATGTTTT+TGG | + | chr1_4:21234926-21234945 | None:intergenic | 30.0% |
| AAGAAATCAAAAGTTACCTG+TGG | + | chr1_4:21234946-21234965 | None:intergenic | 30.0% | |
| ACTCCATTTACTTTGACAAA+TGG | - | chr1_4:21235316-21235335 | Msa0155680:intron | 30.0% | |
| TCTCCATTTGTCAAAGTAAA+TGG | + | chr1_4:21235322-21235341 | None:intergenic | 30.0% | |
| ATTTACTTTGACAAATGGAG+AGG | - | chr1_4:21235321-21235340 | Msa0155680:intron | 30.0% | |
| !! | CACAGAACTTGTATTTTGAA+TGG | + | chr1_4:21235388-21235407 | None:intergenic | 30.0% |
| TCAAAATACAAGTTCTGTGA+AGG | - | chr1_4:21235389-21235408 | Msa0155680:intron | 30.0% | |
| !!! | ATGTGCATGTCTTTTTTTAG+TGG | - | chr1_4:21235418-21235437 | Msa0155680:intron | 30.0% |
| AGGAACCAATAAGAATTGAT+CGG | + | chr1_4:21235481-21235500 | None:intergenic | 30.0% | |
| !! | AATTCTTATTGGTTCCTCTA+AGG | - | chr1_4:21235484-21235503 | Msa0155680:intron | 30.0% |
| ! | AATAAACCACAATTTTCGCA+CGG | + | chr1_4:21235721-21235740 | None:intergenic | 30.0% |
| TATTCCCAGTTCAAATGAAA+AGG | - | chr1_4:21235737-21235756 | Msa0155680:intron | 30.0% | |
| ATTCCCAGTTCAAATGAAAA+GGG | - | chr1_4:21235738-21235757 | Msa0155680:intron | 30.0% | |
| CAGTCAAGTACATTAAGATT+GGG | + | chr1_4:21235965-21235984 | None:intergenic | 30.0% | |
| TCAGTCAAGTACATTAAGAT+TGG | + | chr1_4:21235966-21235985 | None:intergenic | 30.0% | |
| AGAAATTATCCAAGCTTTCA+AGG | - | chr1_4:21236109-21236128 | Msa0155680:CDS | 30.0% | |
| !!! | TTTCAAGGAGTTGCATTTTT+TGG | - | chr1_4:21236124-21236143 | Msa0155680:CDS | 30.0% |
| !! | TAGTTTGTTTATCACTGTTG+AGG | - | chr1_4:21236198-21236217 | Msa0155680:five_prime_UTR | 30.0% |
| ! | GATGTTGTATCTGTATTTTG+TGG | - | chr1_4:21236244-21236263 | Msa0155680:five_prime_UTR | 30.0% |
| ! | AAATCTTCTGGTTAATTCTC+TGG | - | chr1_4:21236283-21236302 | Msa0155680:five_prime_UTR | 30.0% |
| ! | GAGATATCTTTGAAGGATCA+AGG | - | chr1_4:21229995-21230014 | Msa0155680:three_prime_UTR | 35.0% |
| CTATACTCAAGCCATCAAAA+AGG | - | chr1_4:21230063-21230082 | Msa0155680:three_prime_UTR | 35.0% | |
| ! | ATTTGAAGGGTCCTTTTTGA+TGG | + | chr1_4:21230077-21230096 | None:intergenic | 35.0% |
| ! | CTAAAAAGTGTGGGATTTGA+AGG | + | chr1_4:21230091-21230110 | None:intergenic | 35.0% |
| !! | CTTCAAATCCCACACTTTTT+AGG | - | chr1_4:21230089-21230108 | Msa0155680:three_prime_UTR | 35.0% |
| !!! | AAATCCCACACTTTTTAGGT+AGG | - | chr1_4:21230093-21230112 | Msa0155680:three_prime_UTR | 35.0% |
| ! | CATTGTGGTTTTCTTGATCT+GGG | - | chr1_4:21230222-21230241 | Msa0155680:CDS | 35.0% |
| !! | GTTTGGTTTCAATTTTGGTG+GGG | - | chr1_4:21230800-21230819 | Msa0155680:intron | 35.0% |
| ! | GCTAAAGCGCTTAATTAAGT+AGG | - | chr1_4:21231163-21231182 | Msa0155680:intron | 35.0% |
| ! | AGAGCTATTTGGTTTCGAAA+GGG | + | chr1_4:21231385-21231404 | None:intergenic | 35.0% |
| ! | AAGAGCTATTTGGTTTCGAA+AGG | + | chr1_4:21231386-21231405 | None:intergenic | 35.0% |
| ! | TTTGACTGAGTTGAGACTTA+CGG | - | chr1_4:21231487-21231506 | Msa0155680:intron | 35.0% |
| ! | TACCGTGACAGTGATTTTTA+TGG | + | chr1_4:21231536-21231555 | None:intergenic | 35.0% |
| TAGTAGAGAATCAGCATAAC+CGG | - | chr1_4:21231554-21231573 | Msa0155680:CDS | 35.0% | |
| GGAATTCTCTCTTTAAACTC+CGG | + | chr1_4:21231576-21231595 | None:intergenic | 35.0% | |
| GGAGTTACGTATTTAAACTG+TGG | - | chr1_4:21231797-21231816 | Msa0155680:intron | 35.0% | |
| ATTAAAACCCGAATGGGAAA+AGG | - | chr1_4:21231970-21231989 | Msa0155680:intron | 35.0% | |
| ! | AGATCTTACCTTTTCCCATT+CGG | + | chr1_4:21231981-21232000 | None:intergenic | 35.0% |
| GTTTGAATTCCACTACACTA+CGG | + | chr1_4:21232308-21232327 | None:intergenic | 35.0% | |
| !! | TTGACAACACTGCTTTTGAT+TGG | - | chr1_4:21232354-21232373 | Msa0155680:intron | 35.0% |
| !! | GCTTGCTATCTTTAACTAGT+TGG | + | chr1_4:21232525-21232544 | None:intergenic | 35.0% |
| TATGAGATCGAATGTTGACA+TGG | - | chr1_4:21232564-21232583 | Msa0155680:intron | 35.0% | |
| ACGTATCATAACAGATACGT+TGG | - | chr1_4:21232792-21232811 | Msa0155680:intron | 35.0% | |
| CGTATCATAACAGATACGTT+GGG | - | chr1_4:21232793-21232812 | Msa0155680:intron | 35.0% | |
| AAACTCACATTGAAAGCTTC+CGG | - | chr1_4:21233522-21233541 | Msa0155680:intron | 35.0% | |
| ! | TGGCAAAAAGTAACCACTTT+TGG | - | chr1_4:21233557-21233576 | Msa0155680:CDS | 35.0% |
| ! | GGGAGTTTAAAATCCAAAAG+TGG | + | chr1_4:21233573-21233592 | None:intergenic | 35.0% |
| ! | CTTTTGGATTTTAAACTCCC+CGG | - | chr1_4:21233573-21233592 | Msa0155680:CDS | 35.0% |
| !!! | ACGTTGATTTTGATACTCTC+CGG | + | chr1_4:21233595-21233614 | None:intergenic | 35.0% |
| ! | ATTATGTGGCTTTTGTCAGA+GGG | - | chr1_4:21233755-21233774 | Msa0155680:intron | 35.0% |
| !!! | GGGTTTTATTAAAAAGGTGC+AGG | + | chr1_4:21233814-21233833 | None:intergenic | 35.0% |
| CAAAATTCATAAAAGGAGCC+GGG | + | chr1_4:21233841-21233860 | None:intergenic | 35.0% | |
| ! | GCTTGATTTGAATTTATGGG+AGG | + | chr1_4:21233882-21233901 | None:intergenic | 35.0% |
| ACTTGAGAACTCTTAAAGTG+AGG | + | chr1_4:21233906-21233925 | None:intergenic | 35.0% | |
| GAGTTCCTAAGCTATTTGTT+TGG | + | chr1_4:21233952-21233971 | None:intergenic | 35.0% | |
| TAAAATAAGGTTCTGTCTGG+GGG | - | chr1_4:21233973-21233992 | Msa0155680:intron | 35.0% | |
| CAACACATTCAAAACTGAAC+AGG | - | chr1_4:21234196-21234215 | Msa0155680:CDS | 35.0% | |
| ! | TTTGGGATAATCTTTCTCGT+TGG | - | chr1_4:21234725-21234744 | Msa0155680:intron | 35.0% |
| !! | TAATCTTTCTCGTTGGCTTA+TGG | - | chr1_4:21234732-21234751 | Msa0155680:intron | 35.0% |
| ACTCAATAAAGTTCCCTGTA+TGG | - | chr1_4:21234767-21234786 | Msa0155680:intron | 35.0% | |
| AAACATCATTGCTTATCCAC+AGG | - | chr1_4:21234927-21234946 | Msa0155680:intron | 35.0% | |
| ATTATGAAGGTGAGTCTGTT+AGG | - | chr1_4:21234975-21234994 | Msa0155680:intron | 35.0% | |
| CCTATATTGTCTTCTGTAGA+AGG | + | chr1_4:21235165-21235184 | None:intergenic | 35.0% | |
| CCTTCTACAGAAGACAATAT+AGG | - | chr1_4:21235162-21235181 | Msa0155680:intron | 35.0% | |
| AATCAGAGGGATAAAAGAGA+AGG | + | chr1_4:21235251-21235270 | None:intergenic | 35.0% | |
| TCCATCCGATCAATTCTTAT+TGG | - | chr1_4:21235473-21235492 | Msa0155680:intron | 35.0% | |
| ACCAATAAGAATTGATCGGA+TGG | + | chr1_4:21235477-21235496 | None:intergenic | 35.0% | |
| ! | TGTCCCTTTTCATTTGAACT+GGG | + | chr1_4:21235744-21235763 | None:intergenic | 35.0% |
| ! | TTGTATACCTTGCTATGTTC+AGG | - | chr1_4:21235875-21235894 | Msa0155680:intron | 35.0% |
| ! | TGTATACCTTGCTATGTTCA+GGG | - | chr1_4:21235876-21235895 | Msa0155680:intron | 35.0% |
| TCAAGTACATTAAGATTGGG+AGG | + | chr1_4:21235962-21235981 | None:intergenic | 35.0% | |
| CCAAAGAGACAACAAAACAT+AGG | + | chr1_4:21236038-21236057 | None:intergenic | 35.0% | |
| !! | CCTATGTTTTGTTGTCTCTT+TGG | - | chr1_4:21236035-21236054 | Msa0155680:CDS | 35.0% |
| TGATTGCTCTTGATCTATTC+TGG | - | chr1_4:21236164-21236183 | Msa0155680:exon | 35.0% | |
| ! | TCTTGATCTATTCTGGAAAC+TGG | - | chr1_4:21236171-21236190 | Msa0155680:exon | 35.0% |
| !!! | GGGTTTACTAAGTTTTGGGT+AGG | + | chr1_4:21229868-21229887 | None:intergenic | 40.0% |
| TCGATGGCAGAAACAAAAGA+AGG | - | chr1_4:21229962-21229981 | Msa0155680:three_prime_UTR | 40.0% | |
| !!! | GGTAACGAGTTTTTCAAGTC+AGG | - | chr1_4:21230016-21230035 | Msa0155680:three_prime_UTR | 40.0% |
| ! | GGTACCTACCTAAAAAGTGT+GGG | + | chr1_4:21230100-21230119 | None:intergenic | 40.0% |
| !! | GTTGTTTTGTCACTGCATTG+TGG | - | chr1_4:21230207-21230226 | Msa0155680:CDS | 40.0% |
| ! | GCATTGTGGTTTTCTTGATC+TGG | - | chr1_4:21230221-21230240 | Msa0155680:CDS | 40.0% |
| ! | ACATACACTAAGGGCATGTT+TGG | + | chr1_4:21230782-21230801 | None:intergenic | 40.0% |
| ACATGCCCTTAGTGTATGTT+TGG | - | chr1_4:21230783-21230802 | Msa0155680:intron | 40.0% | |
| AAGTGATCGAAGGCTCTATT+TGG | + | chr1_4:21231141-21231160 | None:intergenic | 40.0% | |
| GCTTTAGCATAAGTGATCGA+AGG | + | chr1_4:21231151-21231170 | None:intergenic | 40.0% | |
| CTGCAAAGCAAAGAGCTATT+TGG | + | chr1_4:21231396-21231415 | None:intergenic | 40.0% | |
| GATCTCCTACTGCTAAACAA+TGG | - | chr1_4:21231421-21231440 | Msa0155680:intron | 40.0% | |
| CAATGCCATTGTTTAGCAGT+AGG | + | chr1_4:21231429-21231448 | None:intergenic | 40.0% | |
| TCAACTCAGTCAAAGGCTTT+GGG | + | chr1_4:21231481-21231500 | None:intergenic | 40.0% | |
| GTAAGTCTCAACTCAGTCAA+AGG | + | chr1_4:21231488-21231507 | None:intergenic | 40.0% | |
| !! | AGGAAATGAAAAGTACTCGC+TGG | + | chr1_4:21231597-21231616 | None:intergenic | 40.0% |
| ! | GATCTTACCTTTTCCCATTC+GGG | + | chr1_4:21231980-21231999 | None:intergenic | 40.0% |
| TTCTGCTTGAATACACTTCC+AGG | - | chr1_4:21232060-21232079 | Msa0155680:intron | 40.0% | |
| TCTGCTTGAATACACTTCCA+GGG | - | chr1_4:21232061-21232080 | Msa0155680:intron | 40.0% | |
| !! | ACTGCTTTTGATTGGAAGCT+GGG | - | chr1_4:21232362-21232381 | Msa0155680:intron | 40.0% |
| GTGCCTGTGTGAATATTTGT+AGG | - | chr1_4:21232423-21232442 | Msa0155680:intron | 40.0% | |
| AGGCCTACAAATATTCACAC+AGG | + | chr1_4:21232429-21232448 | None:intergenic | 40.0% | |
| AGCTATCTGAAAGGAAGCTA+AGG | + | chr1_4:21232449-21232468 | None:intergenic | 40.0% | |
| ATACTGCGAAGCTATCTGAA+AGG | + | chr1_4:21232458-21232477 | None:intergenic | 40.0% | |
| AGATACACTGAAGCCTGAAT+TGG | - | chr1_4:21232597-21232616 | Msa0155680:intron | 40.0% | |
| CATGCTAGTTGAGCACTATT+AGG | + | chr1_4:21232648-21232667 | None:intergenic | 40.0% | |
| GATACTTACCAGACACGATA+CGG | + | chr1_4:21232768-21232787 | None:intergenic | 40.0% | |
| AGATTACCACTATGTGGGAT+TGG | - | chr1_4:21233229-21233248 | Msa0155680:intron | 40.0% | |
| ATCTAACCAATCCCACATAG+TGG | + | chr1_4:21233238-21233257 | None:intergenic | 40.0% | |
| !! | ACTATGTGGGATTGGTTAGA+TGG | - | chr1_4:21233237-21233256 | Msa0155680:intron | 40.0% |
| !! | CAACTTGTTGCTACGAATGA+TGG | + | chr1_4:21233278-21233297 | None:intergenic | 40.0% |
| TTTATACTCGGTAGATCACC+AGG | + | chr1_4:21233305-21233324 | None:intergenic | 40.0% | |
| !! | GTGTGGATTAGGAATTGGAA+TGG | + | chr1_4:21233418-21233437 | None:intergenic | 40.0% |
| ! | TTTTCTCCGCCATTCTTTCA+TGG | - | chr1_4:21233454-21233473 | Msa0155680:intron | 40.0% |
| TTTCTCCGCCATTCTTTCAT+GGG | - | chr1_4:21233455-21233474 | Msa0155680:intron | 40.0% | |
| AACAACCCATGAAAGAATGG+CGG | + | chr1_4:21233463-21233482 | None:intergenic | 40.0% | |
| AACTCACATTGAAAGCTTCC+GGG | - | chr1_4:21233523-21233542 | Msa0155680:intron | 40.0% | |
| !! | GTTGATTTTGATACTCTCCG+GGG | + | chr1_4:21233593-21233612 | None:intergenic | 40.0% |
| !!! | CGTTGATTTTGATACTCTCC+GGG | + | chr1_4:21233594-21233613 | None:intergenic | 40.0% |
| CACATAATGATTTGACGTGG+TGG | + | chr1_4:21233743-21233762 | None:intergenic | 40.0% | |
| CACCACGTCAAATCATTATG+TGG | - | chr1_4:21233741-21233760 | Msa0155680:intron | 40.0% | |
| AGCCACATAATGATTTGACG+TGG | + | chr1_4:21233746-21233765 | None:intergenic | 40.0% | |
| ! | CATTATGTGGCTTTTGTCAG+AGG | - | chr1_4:21233754-21233773 | Msa0155680:intron | 40.0% |
| AGAGTTCTCAAGTGAAGAGT+TGG | - | chr1_4:21233913-21233932 | Msa0155680:intron | 40.0% | |
| ! | CATACTTTTCAGACTGCAAG+AGG | + | chr1_4:21234447-21234466 | None:intergenic | 40.0% |
| CTCTTGCAGTCTGAAAAGTA+TGG | - | chr1_4:21234445-21234464 | Msa0155680:intron | 40.0% | |
| AGTATGGATCTGAAGAAAGC+TGG | - | chr1_4:21234461-21234480 | Msa0155680:intron | 40.0% | |
| ! | TGATTTTACAGCAGTCTCCA+TGG | + | chr1_4:21234515-21234534 | None:intergenic | 40.0% |
| TGGAGACTGCTGTAAAATCA+TGG | - | chr1_4:21234515-21234534 | Msa0155680:intron | 40.0% | |
| ATGGCATGAAACTTCTTCAG+TGG | - | chr1_4:21234534-21234553 | Msa0155680:intron | 40.0% | |
| ! | TGTGTCTCATTCCATTTTCC+AGG | - | chr1_4:21234807-21234826 | Msa0155680:intron | 40.0% |
| !! | GCAGCTGTTTTCCATTTCTT+AGG | - | chr1_4:21234854-21234873 | Msa0155680:intron | 40.0% |
| TCAGCATACTGCCTAAGAAA+TGG | + | chr1_4:21234868-21234887 | None:intergenic | 40.0% | |
| ATTTCTTAGGCAGTATGCTG+AGG | - | chr1_4:21234867-21234886 | Msa0155680:intron | 40.0% | |
| AGGTGAGTCTGTTAGGTTAT+AGG | - | chr1_4:21234982-21235001 | Msa0155680:intron | 40.0% | |
| AGTTATTCAGATTGTGCGAG+AGG | - | chr1_4:21235084-21235103 | Msa0155680:intron | 40.0% | |
| !! | CTTCTGTAGAAGGCACTATT+AGG | + | chr1_4:21235155-21235174 | None:intergenic | 40.0% |
| AAGCATAAAGCTAGCATCCA+TGG | + | chr1_4:21235222-21235241 | None:intergenic | 40.0% | |
| AGAGGGATAAAAGAGAAGGA+AGG | + | chr1_4:21235247-21235266 | None:intergenic | 40.0% | |
| GGATCTTTACTCTAGCTACA+TGG | - | chr1_4:21235342-21235361 | Msa0155680:intron | 40.0% | |
| TAAGGTTCTCTACTATGCCT+GGG | - | chr1_4:21235502-21235521 | Msa0155680:intron | 40.0% | |
| AAAAATACATGACCCATCCC+AGG | + | chr1_4:21235522-21235541 | None:intergenic | 40.0% | |
| ! | CTGTCCCTTTTCATTTGAAC+TGG | + | chr1_4:21235745-21235764 | None:intergenic | 40.0% |
| AAGTGCATCCAAAAAAGGGT+GGG | + | chr1_4:21235787-21235806 | None:intergenic | 40.0% | |
| TAAGTGCATCCAAAAAAGGG+TGG | + | chr1_4:21235788-21235807 | None:intergenic | 40.0% | |
| ! | GTTCAGGGATCCAGAAATTT+TGG | - | chr1_4:21235891-21235910 | Msa0155680:intron | 40.0% |
| ! | GATCCAGAAATTTTGGACGT+TGG | - | chr1_4:21235898-21235917 | Msa0155680:intron | 40.0% |
| ! | GTCTTTTCTTTGAACAAGCG+AGG | + | chr1_4:21235940-21235959 | None:intergenic | 40.0% |
| AATGCAACTCCTTGAAAGCT+TGG | + | chr1_4:21236121-21236140 | None:intergenic | 40.0% | |
| GGGTACCTACCTAAAAAGTG+TGG | + | chr1_4:21230101-21230120 | None:intergenic | 45.0% | |
| ! | CACTAAGGGCATGTTTGGAT+TGG | + | chr1_4:21230777-21230796 | None:intergenic | 45.0% |
| TCTGGCTAAAAGGGAGTTGA+AGG | + | chr1_4:21231023-21231042 | None:intergenic | 45.0% | |
| ! | TGGTTTCGAAAGGGTGTACA+CGG | + | chr1_4:21231376-21231395 | None:intergenic | 45.0% |
| !! | CAGTCAAAGGCTTTGGGTTA+AGG | + | chr1_4:21231475-21231494 | None:intergenic | 45.0% |
| CTCAACTCAGTCAAAGGCTT+TGG | + | chr1_4:21231482-21231501 | None:intergenic | 45.0% | |
| TGCTGCAGCATTGCTACAAT+TGG | - | chr1_4:21231904-21231923 | Msa0155680:intron | 45.0% | |
| TACACTTCCAGGGACATTTC+CGG | - | chr1_4:21232071-21232090 | Msa0155680:intron | 45.0% | |
| TTTCCGGAAGGGATGCATAT+TGG | - | chr1_4:21232087-21232106 | Msa0155680:intron | 45.0% | |
| !! | CACTGCTTTTGATTGGAAGC+TGG | - | chr1_4:21232361-21232380 | Msa0155680:intron | 45.0% |
| TTCACACAGGCACATGTATC+AGG | + | chr1_4:21232416-21232435 | None:intergenic | 45.0% | |
| CAAAACAGAGCACAAGCCAT+TGG | + | chr1_4:21232824-21232843 | None:intergenic | 45.0% | |
| ! | TGTTGCTACGAATGATGGAG+CGG | + | chr1_4:21233273-21233292 | None:intergenic | 45.0% |
| !!! | GGTTACTTTTTGCCACCACT+TGG | + | chr1_4:21233552-21233571 | None:intergenic | 45.0% |
| GTTGTTTAAGGACATGCGAG+TGG | - | chr1_4:21233663-21233682 | Msa0155680:CDS | 45.0% | |
| ACATGCGAGTGGCGTTAAAT+TGG | - | chr1_4:21233674-21233693 | Msa0155680:CDS | 45.0% | |
| CATGCGAGTGGCGTTAAATT+GGG | - | chr1_4:21233675-21233694 | Msa0155680:CDS | 45.0% | |
| CTAATCCAAGGTTCGACGAA+TGG | - | chr1_4:21234111-21234130 | Msa0155680:intron | 45.0% | |
| TAAGTCCATTCGTCGAACCT+TGG | + | chr1_4:21234119-21234138 | None:intergenic | 45.0% | |
| ! | GTCTGCGTCTTTTCCTTATC+AGG | + | chr1_4:21234580-21234599 | None:intergenic | 45.0% |
| TGACTCAAAGGCCTGGAAAA+TGG | + | chr1_4:21234821-21234840 | None:intergenic | 45.0% | |
| !! | GTGTGTTTCTGGTGACTCAA+AGG | + | chr1_4:21234833-21234852 | None:intergenic | 45.0% |
| AAACAGCTGCTGTGTGTTTC+TGG | + | chr1_4:21234844-21234863 | None:intergenic | 45.0% | |
| GGCATAGTAGAGAACCTTAG+AGG | + | chr1_4:21235501-21235520 | None:intergenic | 45.0% | |
| CTAAGGTTCTCTACTATGCC+TGG | - | chr1_4:21235501-21235520 | Msa0155680:intron | 45.0% | |
| TTCTCTACTATGCCTGGGAT+GGG | - | chr1_4:21235507-21235526 | Msa0155680:intron | 45.0% | |
| AACAACATTCTGTGTCTGCC+AGG | - | chr1_4:21235620-21235639 | Msa0155680:intron | 45.0% | |
| AAGGCCAAGGATCAAGGAAA+TGG | - | chr1_4:21235649-21235668 | Msa0155680:intron | 45.0% | |
| GCTTCCATTTCCTTGATCCT+TGG | + | chr1_4:21235656-21235675 | None:intergenic | 45.0% | |
| ! | TGGAAGCATGCACAGAATGA+TGG | - | chr1_4:21235669-21235688 | Msa0155680:intron | 45.0% |
| ! | AACCACAATTTTCGCACGGA+AGG | + | chr1_4:21235717-21235736 | None:intergenic | 45.0% |
| AAAAGGGACAGATACTGTGC+AGG | - | chr1_4:21235754-21235773 | Msa0155680:intron | 45.0% | |
| !!! | GTTTCTCTCCCACCCTTTTT+TGG | - | chr1_4:21235776-21235795 | Msa0155680:intron | 45.0% |
| GAGGCAAGTTTGTAGACAGT+AGG | - | chr1_4:21236217-21236236 | Msa0155680:five_prime_UTR | 45.0% | |
| ! | GGTTTCGAAAGGGTGTACAC+GGG | + | chr1_4:21231375-21231394 | None:intergenic | 50.0% |
| CAATGCTGCAGCACGATTAC+TGG | + | chr1_4:21231897-21231916 | None:intergenic | 50.0% | |
| TTCCAGGGACATTTCCGGAA+GGG | - | chr1_4:21232076-21232095 | Msa0155680:intron | 50.0% | |
| CCTCCAATATGCATCCCTTC+CGG | + | chr1_4:21232093-21232112 | None:intergenic | 50.0% | |
| TAGCAAGCGAGCTCAAGAAG+TGG | - | chr1_4:21232537-21232556 | Msa0155680:intron | 50.0% | |
| ACACGATACGGCGAGGAAAT+TGG | + | chr1_4:21232756-21232775 | None:intergenic | 50.0% | |
| GATACGTTGGGATGCACCAA+TGG | - | chr1_4:21232805-21232824 | Msa0155680:intron | 50.0% | |
| ! | CGAATGATGGAGCGGTAAGA+AGG | + | chr1_4:21233265-21233284 | None:intergenic | 50.0% |
| GTAGCAACAAGTTGCTGTCC+TGG | - | chr1_4:21233284-21233303 | Msa0155680:intron | 50.0% | |
| TCACATTGAAAGCTTCCGGG+TGG | - | chr1_4:21233526-21233545 | Msa0155680:intron | 50.0% | |
| !! | GACGTGGTGGCTTTAGATTG+TGG | + | chr1_4:21233730-21233749 | None:intergenic | 50.0% |
| ! | TTTCTGGTGACTCAAAGGCC+TGG | + | chr1_4:21234828-21234847 | None:intergenic | 50.0% |
| !!! | GTTTTTGGCAGCCACTAAGC+AGG | + | chr1_4:21234911-21234930 | None:intergenic | 50.0% |
| GTTCTCTACTATGCCTGGGA+TGG | - | chr1_4:21235506-21235525 | Msa0155680:intron | 50.0% | |
| TCTGGAAAGGCCAAGGATCA+AGG | - | chr1_4:21235643-21235662 | Msa0155680:intron | 50.0% | |
| CTCCTTCCGTGCGAAAATTG+TGG | - | chr1_4:21235712-21235731 | Msa0155680:intron | 50.0% | |
| CTGGATCCCTGAACATAGCA+AGG | + | chr1_4:21235885-21235904 | None:intergenic | 50.0% | |
| GCGCCAACGTCCAAAATTTC+TGG | + | chr1_4:21235904-21235923 | None:intergenic | 50.0% | |
| CTTCCAGGGACATTTCCGGA+AGG | - | chr1_4:21232075-21232094 | Msa0155680:intron | 55.0% | |
| ATCCCTTCCGGAAATGTCCC+TGG | + | chr1_4:21232081-21232100 | None:intergenic | 55.0% | |
| CCGGAAGGGATGCATATTGG+AGG | - | chr1_4:21232090-21232109 | Msa0155680:intron | 55.0% | |
| !! | GCTAGAGCACCGTAGTGTAG+TGG | - | chr1_4:21232296-21232315 | Msa0155680:intron | 55.0% |
| TTTCCTCGCCGTATCGTGTC+TGG | - | chr1_4:21232757-21232776 | Msa0155680:intron | 55.0% | |
| TTACCAGACACGATACGGCG+AGG | + | chr1_4:21232763-21232782 | None:intergenic | 55.0% | |
| CTCATTCCTCGTCGAGACCA+TGG | - | chr1_4:21234495-21234514 | Msa0155680:intron | 55.0% | |
| CTCAAGAGCAGCCTGCTTAG+TGG | - | chr1_4:21234897-21234916 | Msa0155680:intron | 55.0% | |
| CATTCTGTGTCTGCCAGGTC+TGG | - | chr1_4:21235625-21235644 | Msa0155680:intron | 55.0% | |
| TGTGTCTGCCAGGTCTGGAA+AGG | - | chr1_4:21235630-21235649 | Msa0155680:intron | 55.0% | |
| ! | ATCCTTGGCCTTTCCAGACC+TGG | + | chr1_4:21235641-21235660 | None:intergenic | 55.0% |
| CGATCGAAACGTGCCCCAAG+TGG | + | chr1_4:21230578-21230597 | None:intergenic | 60.0% | |
| AAAGCTTCCGGGTGGCCAAG+TGG | - | chr1_4:21233534-21233553 | Msa0155680:CDS | 60.0% | |
| TTTGCCACCACTTGGCCACC+CGG | + | chr1_4:21233544-21233563 | None:intergenic | 60.0% | |
| CAGTCTCCATGGTCTCGACG+AGG | + | chr1_4:21234504-21234523 | None:intergenic | 60.0% | |
| TGCCAGGTCTGGAAAGGCCA+AGG | - | chr1_4:21235636-21235655 | Msa0155680:intron | 60.0% | |
| GCTTCCGGGTGGCCAAGTGG+TGG | - | chr1_4:21233537-21233556 | Msa0155680:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 21229835 | 21236310 | 21229835 | ID=Msa0155680;Name=Msa0155680 |
| chr1_4 | mRNA | 21229835 | 21236310 | 21229835 | ID=Msa0155680-mRNA-1;Parent=Msa0155680;Name=Msa0155680-mRNA-1;_AED=0.06;_eAED=0.06;_QI=130|0.83|1|1|1|1|7|338|307 |
| chr1_4 | exon | 21229835 | 21230248 | 21229835 | ID=Msa0155680-mRNA-1:exon:7678;Parent=Msa0155680-mRNA-1 |
| chr1_4 | exon | 21230370 | 21230503 | 21230370 | ID=Msa0155680-mRNA-1:exon:7677;Parent=Msa0155680-mRNA-1 |
| chr1_4 | exon | 21231197 | 21231316 | 21231197 | ID=Msa0155680-mRNA-1:exon:7676;Parent=Msa0155680-mRNA-1 |
| chr1_4 | exon | 21231512 | 21231691 | 21231512 | ID=Msa0155680-mRNA-1:exon:7675;Parent=Msa0155680-mRNA-1 |
| chr1_4 | exon | 21233527 | 21233700 | 21233527 | ID=Msa0155680-mRNA-1:exon:7674;Parent=Msa0155680-mRNA-1 |
| chr1_4 | exon | 21234154 | 21234247 | 21234154 | ID=Msa0155680-mRNA-1:exon:7673;Parent=Msa0155680-mRNA-1 |
| chr1_4 | exon | 21236035 | 21236310 | 21236035 | ID=Msa0155680-mRNA-1:exon:7672;Parent=Msa0155680-mRNA-1 |
| chr1_4 | five_prime_UTR | 21236181 | 21236310 | 21236181 | ID=Msa0155680-mRNA-1:five_prime_utr;Parent=Msa0155680-mRNA-1 |
| chr1_4 | CDS | 21236035 | 21236180 | 21236035 | ID=Msa0155680-mRNA-1:cds;Parent=Msa0155680-mRNA-1 |
| chr1_4 | CDS | 21234154 | 21234247 | 21234154 | ID=Msa0155680-mRNA-1:cds;Parent=Msa0155680-mRNA-1 |
| chr1_4 | CDS | 21233527 | 21233700 | 21233527 | ID=Msa0155680-mRNA-1:cds;Parent=Msa0155680-mRNA-1 |
| chr1_4 | CDS | 21231512 | 21231691 | 21231512 | ID=Msa0155680-mRNA-1:cds;Parent=Msa0155680-mRNA-1 |
| chr1_4 | CDS | 21231197 | 21231316 | 21231197 | ID=Msa0155680-mRNA-1:cds;Parent=Msa0155680-mRNA-1 |
| chr1_4 | CDS | 21230370 | 21230503 | 21230370 | ID=Msa0155680-mRNA-1:cds;Parent=Msa0155680-mRNA-1 |
| chr1_4 | CDS | 21230173 | 21230248 | 21230173 | ID=Msa0155680-mRNA-1:cds;Parent=Msa0155680-mRNA-1 |
| chr1_4 | three_prime_UTR | 21229835 | 21230172 | 21229835 | ID=Msa0155680-mRNA-1:three_prime_utr;Parent=Msa0155680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
