AlfalfaGEDB | Msa0716830

M. sativa cultivar zhongmu-4 / Msa0716830

KEGG: K14544
GO: -
PFAM: PF03813.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716830	XP_003612000.1	97.262	1059	16	3	1	1057	1	1048	0.0	2112

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716830	sp\|Q6NRY2\|NOL6_XENLA	27.804	1061	660	21	4	1012	84	1090	2.56e-128	422

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716830	G7KDK7	97.262	1059	16	3	1	1057	1	1048	0.0	2112

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003720	Msa0716830	0.830522	2.801751e-55	-8.615850e-47
Msa0003890	Msa0716830	0.800025	1.748882e-48	-8.615850e-47
Msa0027230	Msa0716830	0.810969	8.847681e-51	-8.615850e-47
Msa0028420	Msa0716830	0.824324	8.585091e-54	-8.615850e-47
Msa0029240	Msa0716830	0.810633	1.046346e-50	-8.615850e-47
Msa0029270	Msa0716830	0.810055	1.394216e-50	-8.615850e-47
Msa0030200	Msa0716830	0.832260	1.046547e-55	-8.615850e-47
Msa0032090	Msa0716830	0.844114	9.235140e-59	-8.615850e-47
Msa0032430	Msa0716830	0.876053	1.895924e-68	-8.615850e-47
Msa0036870	Msa0716830	0.812107	5.006040e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716830	MtrunA17_Chr5g0404121	97.262	1059	16	3	1	1057	1	1048	0.0	2112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716830	AT1G63810.2	60.377	1060	401	8	2	1056	8	1053	0.0	1335
Msa0716830	AT1G63810.1	60.377	1060	401	8	2	1056	8	1053	0.0	1335

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Find 277 sgRNAs with CRISPR-Local

Find 617 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACTAGAATTATACTT+TGG	0.461888	5_1:-10408902	None:intergenic
AAACCATTGATTATTCAAAA+GGG	0.477504	5_1:+10406743	Msa0716830:CDS
AAACCCGGTGATCCGCGAGC+AGG	0.518854	5_1:-10412734	None:intergenic
AAAGCATCTGAGGCCTGGAC+TGG	0.476348	5_1:+10413378	Msa0716830:CDS
AAAGTATAATTCTAGTATTT+TGG	0.215152	5_1:+10408904	Msa0716830:CDS
AAATGCATGGAGAAGTGTAG+AGG	0.649090	5_1:+10410193	Msa0716830:CDS
AAATTTCCAGAGTGTGCTAT+CGG	0.555755	5_1:-10411527	None:intergenic
AACAAGGAGCTATATGCATC+AGG	0.422250	5_1:+10410633	Msa0716830:CDS
AACATTCATAATTCAAAGAA+TGG	0.374061	5_1:+10408770	Msa0716830:CDS
AACCCGGTGATCCGCGAGCA+GGG	0.564009	5_1:-10412733	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCATTGAATCCATTGAAAA+AGG	-	chr5_1:10406533-10406552	None:intergenic	30.0%
GCAGTAACATTATAGTTATC+AGG	-	chr5_1:10406662-10406681	None:intergenic	30.0%
TTGTCATAAGCTGTTTATGT+AGG	+	chr5_1:10407110-10407129	Msa0716830:intron	30.0%
AAACAGTCTCACAAAACTTA+AGG	+	chr5_1:10407140-10407159	Msa0716830:intron	30.0%
ATAGAATACACTTGCTCTAA+GGG	-	chr5_1:10407201-10407220	None:intergenic	30.0%
AATAGAATACACTTGCTCTA+AGG	-	chr5_1:10407202-10407221	None:intergenic	30.0%
TTAGAGCAAGTGTATTCTAT+TGG	+	chr5_1:10407201-10407220	Msa0716830:intron	30.0%
TTGTAAATTAATGGAGAGAG+AGG	+	chr5_1:10407364-10407383	Msa0716830:intron	30.0%
ATTCAAGTAAAACTAGACAC+GGG	-	chr5_1:10407528-10407547	None:intergenic	30.0%
ACTAAATCTATTAACCCGTT+TGG	+	chr5_1:10407580-10407599	Msa0716830:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	10406329	10415363	10406329	ID=Msa0716830;Name=Msa0716830
chr5_1	mRNA	10406329	10415363	10406329	ID=Msa0716830-mRNA-1;Parent=Msa0716830;Name=Msa0716830-mRNA-1;_AED=0.11;_eAED=0.11;_QI=210\|0.95\|0.96\|1\|1\|1\|25\|353\|1057
chr5_1	exon	10406329	10406835	10406329	ID=Msa0716830-mRNA-1:exon:4205;Parent=Msa0716830-mRNA-1
chr5_1	exon	10407814	10407979	10407814	ID=Msa0716830-mRNA-1:exon:4206;Parent=Msa0716830-mRNA-1
chr5_1	exon	10408675	10408791	10408675	ID=Msa0716830-mRNA-1:exon:4207;Parent=Msa0716830-mRNA-1
chr5_1	exon	10408879	10409012	10408879	ID=Msa0716830-mRNA-1:exon:4208;Parent=Msa0716830-mRNA-1
chr5_1	exon	10409110	10409260	10409110	ID=Msa0716830-mRNA-1:exon:4209;Parent=Msa0716830-mRNA-1
chr5_1	exon	10409521	10409621	10409521	ID=Msa0716830-mRNA-1:exon:4210;Parent=Msa0716830-mRNA-1
chr5_1	exon	10409971	10410069	10409971	ID=Msa0716830-mRNA-1:exon:4211;Parent=Msa0716830-mRNA-1
chr5_1	exon	10410166	10410281	10410166	ID=Msa0716830-mRNA-1:exon:4212;Parent=Msa0716830-mRNA-1
chr5_1	exon	10410617	10410791	10410617	ID=Msa0716830-mRNA-1:exon:4213;Parent=Msa0716830-mRNA-1
chr5_1	exon	10410888	10410998	10410888	ID=Msa0716830-mRNA-1:exon:4214;Parent=Msa0716830-mRNA-1
chr5_1	exon	10411096	10411174	10411096	ID=Msa0716830-mRNA-1:exon:4215;Parent=Msa0716830-mRNA-1
chr5_1	exon	10411295	10411438	10411295	ID=Msa0716830-mRNA-1:exon:4216;Parent=Msa0716830-mRNA-1
chr5_1	exon	10411525	10411638	10411525	ID=Msa0716830-mRNA-1:exon:4217;Parent=Msa0716830-mRNA-1
chr5_1	exon	10411835	10411956	10411835	ID=Msa0716830-mRNA-1:exon:4218;Parent=Msa0716830-mRNA-1
chr5_1	exon	10412042	10412124	10412042	ID=Msa0716830-mRNA-1:exon:4219;Parent=Msa0716830-mRNA-1
chr5_1	exon	10412210	10412331	10412210	ID=Msa0716830-mRNA-1:exon:4220;Parent=Msa0716830-mRNA-1
chr5_1	exon	10412421	10412541	10412421	ID=Msa0716830-mRNA-1:exon:4221;Parent=Msa0716830-mRNA-1
chr5_1	exon	10412624	10412761	10412624	ID=Msa0716830-mRNA-1:exon:4222;Parent=Msa0716830-mRNA-1
chr5_1	exon	10413035	10413131	10413035	ID=Msa0716830-mRNA-1:exon:4223;Parent=Msa0716830-mRNA-1
chr5_1	exon	10413294	10413419	10413294	ID=Msa0716830-mRNA-1:exon:4224;Parent=Msa0716830-mRNA-1
chr5_1	exon	10413768	10413860	10413768	ID=Msa0716830-mRNA-1:exon:4225;Parent=Msa0716830-mRNA-1
chr5_1	exon	10413965	10414070	10413965	ID=Msa0716830-mRNA-1:exon:4226;Parent=Msa0716830-mRNA-1
chr5_1	exon	10414407	10414552	10414407	ID=Msa0716830-mRNA-1:exon:4227;Parent=Msa0716830-mRNA-1
chr5_1	exon	10414654	10414743	10414654	ID=Msa0716830-mRNA-1:exon:4228;Parent=Msa0716830-mRNA-1
chr5_1	exon	10414885	10415363	10414885	ID=Msa0716830-mRNA-1:exon:4229;Parent=Msa0716830-mRNA-1
chr5_1	five_prime_UTR	10406329	10406538	10406329	ID=Msa0716830-mRNA-1:five_prime_utr;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10406539	10406835	10406539	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10407814	10407979	10407814	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10408675	10408791	10408675	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10408879	10409012	10408879	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10409110	10409260	10409110	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10409521	10409621	10409521	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10409971	10410069	10409971	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10410166	10410281	10410166	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10410617	10410791	10410617	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10410888	10410998	10410888	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10411096	10411174	10411096	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10411295	10411438	10411295	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10411525	10411638	10411525	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10411835	10411956	10411835	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10412042	10412124	10412042	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10412210	10412331	10412210	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10412421	10412541	10412421	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10412624	10412761	10412624	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10413035	10413131	10413035	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10413294	10413419	10413294	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10413768	10413860	10413768	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10413965	10414070	10413965	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10414407	10414552	10414407	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10414654	10414743	10414654	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	CDS	10414885	10415010	10414885	ID=Msa0716830-mRNA-1:cds;Parent=Msa0716830-mRNA-1
chr5_1	three_prime_UTR	10415011	10415363	10415011	ID=Msa0716830-mRNA-1:three_prime_utr;Parent=Msa0716830-mRNA-1

Gene Sequence

>Msa0716830

ATGGATTCAATGGAGTTCAAGGTGAGTGAACTCTTGAAAGAAGTTCAAGTAGATAACTCACAGATTTCTAAACCTGTGGATGACGCCATTGCCGCTATCCAATCTTCCATCGACGAAATCCCTGATAACTATAATGTTACTGCTGATTTGGCACCGAGTTTTGTTAGGGATATTGGTGCTGATAAAGTGGAGTTCAAGTTTAAGAAACCATTGATTATTCAAAAGGGTGGTAGTTACTCTACAGAGAGTCTTGCTAGGCCTGAATTAAATTTGGATCTTATTATAAGATTACCCAAGGAGTGCTTCCATGAGAAGGATTATTTGAACTACAGGTACCATGCTAAGAGGTGTCTTTATCTCTGCTTGGTGAAAAAGTATTTAGAGAAATCTCCATCTATTGGTAGGGTTGAATGGTCTACCCTGCAGAACGAAGCTCGAAAGCCTGTACTGATTGTGTATCCAGCTGCAAAGCTTGTTGATGTTGATGGTTTTTTTGTGAGAATTATTCCATCAGCCAAGGATATCTTTAGCATACCGAAGTTAAACATGACGCGTAATAACATTCATAATTCAAAGAATGAAGGAAGTTCCGTTCAAGCTACACCAAAGTATAATTCTAGTATTTTGGAAGACATGTATATGGAGGATACAAAATTAATCAACGAATTTTTTCTTGGATGGAAGCAACTAAGAGAGGCTTTAATCCTACTTAAGGTATGGGCTCGACAGAGAAGTTCAATATATGTTCATGATTGCCTGAATGGATTTTTGCTATCCGTCATACTGGCACACCTTGCTTCTAGGCAACAAATTAGTAGGTCAATGAAGGCAATTGAAATTATTCGCATTACCTTGAACTTCATTGCCACTTCAGAGACATGGAGTCGAGGTCTCTACTTTCCAAAGGAAGGCGAAGGAAATATTACTAAAGAGGTCCAGATCTCTAACCTTCTTTTGTCTACCTTTGACAGAATGCAACTTAAAGGGTCATTTCCAGTTGTCATGTGTCATCCATCGGGGGCATTCAATTTGGCTTTTCGAATGTCTAGGATTGGTTTTTCTCAGCTTCAAGACGAGGCTGCTTTGACACTTAAATGCATGGAGAAGTGTAGAGGTGGTGGATTTGAGGAAGTTTTTATGACCAAGATTGACTATGCTGTTAAATATGATTATTGTATGAGAATAAACTTTAAGGGAAACAAGGAGCTATATGCATCAGGGTTTTGTATGGATGATGAATGCTGGAGATTGTACGAGGAGAAAATACATGCTATTTTAGCTAAAGGATTGAATGATAGAGCAAAATTTATTCGAGTAATATGGAGAAATGCACAATGCCAGTGGAGCGTGAATGATGGCTTGTCAATTCTTGATAAAGAGCCCTTGTTCATAGGAATTTCAGTCAGTGATTTGGAGAAAGCATTTAGGATGGTTGATATTGGTCCGAATGCTGAAAGTAAAGAAGAGGCTCTTGAATTTCGGAAGTTTTGGGGAGAAAAATCCGAGCTTAGAAGATTTAAAGACAGTAGAATTGCAGAAAGCACAGTATGGGAATGTCAGAAATGGGAAAGGCATCTGATTTTGAAAAAAATAGCCGAGCATGTGCTTAGTCGGCATCTATCTCTATCCAAGGAAAATATTGTAGTAGTTGTGGATCAACTTGATTTCTCTTTGGCTCATGGTGCTGTAGATCCGATAGCACACTCTGGAAATTTGCTCGAGGCATTTGATCTTCTATCAAAGCGTTTGCGTCTTATTGAAGGCCTCCCTTTGAAGGTGTCTAGTGTACAGCCTTTAGACTCTGCATTCAGGTTTACATCAGTCTTCCCTCCTGAACCTCATCTTCTAGCTAATGAAAAAATTGGATCTCTCAGACTGAATAAGTTGGTTCCATCATGCATTCAACCACTAGAAATTATGATTCAGCTGGAAGGTTCGGGGCACTGGCCAATGGATGAAATTGCAATTGAAAAAACAAAATCTAGTTACCTTATTCAAATAGGAAAAAGTCTTCAAAAGAAGTGGGGGATGACATGCACTGCAACTGAGGATGATGTGGATGTGCTAATGTCAGGATATGCATTTCGTCTTAAAATTTTGCATGAGAGGGCCCTTAGTTTACTCAAAGAATTTGGGAATGATAAAAAAACACGGGTACATTCTGCAGACAAGAAACTTTTGATTCGTGGTCAACATGCTAGCATGATTAATGGACTACAAAGTCGTTACCCAATATATGGACCAATAGTTAGACTAGCAAAACGTTGGGCTGCTTCACATCTATTTTCTGCTTGTTTGGTAGAGGAGGCCATTGAGCTTTTGGTTGCTTATCTCTTTCTTAATCCTTTGCCATTTAATGCTCCCTGCTCGCGGATCACCGGGTTTATGAGGTTCCTGCAGTTGCTCTCAAACTATGATTGGACTTATTCTCCTTTGGTTGTTGACATAAATAATGACTTGAGCCCGAGTGATGGAAAAGAAATAAATGATAACTTTTTGCTAAAAAGAAAAAGTCAGGGAGAGAATGAGCAAGCTGTAGGGCCAGTGATGTTCTTGGCTACAGTTTATGATAAAGCATCTGAGGCCTGGACTGGATTATCACCTAGTGCATTGGAACTTAAAAGGTTAGTTGCATATGCTCGAAGCAGTGCAAATTTGTTGATGAAACTCACATTTCAGGAGGAAATTGGTCCATACAGATGGGAGTGCCTTTTGCGAACTCCTTTAAATAACTATGATGCAATCATTCTTCTCCACAAGGACAAACTTGCATATCCTCAGAGGCTTCTCTTCTCATCAGAAGTTGGTCATGGAACACAAGTTGCTAAAGGACATGCTGGTAAGTTCTTCCAACCCTTTTTGTTGCCTAAAGATTTGAAGGGTAGGCGGCCAGAGGAACTTAAAAATAAGTTGCTGGTAGACTTTGATCCATCAAGGTGCTTTATCAAAGATTTAGAGAAAGAGTTTTCCACCAAATTCCAATTATGGCATGATTCTTTAGGAGGCGATGCCATCGGCCTGACGTGGGAGAAATCGTATCCTTCCAAGCGGAAACAAGAGGAAGTGGTCGAGAAAGGATACGACCCTCGGAAGGTGCTAAAAGCTGTAGGTGAAGTTGGAAAAGGGTTTGTGAGAAGTATATACTTTCTCAAGCCACCAAGGCTCGCAAATTAA

Protein sequence

>Msa0716830

MDSMEFKVSELLKEVQVDNSQISKPVDDAIAAIQSSIDEIPDNYNVTADLAPSFVRDIGADKVEFKFKKPLIIQKGGSYSTESLARPELNLDLIIRLPKECFHEKDYLNYRYHAKRCLYLCLVKKYLEKSPSIGRVEWSTLQNEARKPVLIVYPAAKLVDVDGFFVRIIPSAKDIFSIPKLNMTRNNIHNSKNEGSSVQATPKYNSSILEDMYMEDTKLINEFFLGWKQLREALILLKVWARQRSSIYVHDCLNGFLLSVILAHLASRQQISRSMKAIEIIRITLNFIATSETWSRGLYFPKEGEGNITKEVQISNLLLSTFDRMQLKGSFPVVMCHPSGAFNLAFRMSRIGFSQLQDEAALTLKCMEKCRGGGFEEVFMTKIDYAVKYDYCMRINFKGNKELYASGFCMDDECWRLYEEKIHAILAKGLNDRAKFIRVIWRNAQCQWSVNDGLSILDKEPLFIGISVSDLEKAFRMVDIGPNAESKEEALEFRKFWGEKSELRRFKDSRIAESTVWECQKWERHLILKKIAEHVLSRHLSLSKENIVVVVDQLDFSLAHGAVDPIAHSGNLLEAFDLLSKRLRLIEGLPLKVSSVQPLDSAFRFTSVFPPEPHLLANEKIGSLRLNKLVPSCIQPLEIMIQLEGSGHWPMDEIAIEKTKSSYLIQIGKSLQKKWGMTCTATEDDVDVLMSGYAFRLKILHERALSLLKEFGNDKKTRVHSADKKLLIRGQHASMINGLQSRYPIYGPIVRLAKRWAASHLFSACLVEEAIELLVAYLFLNPLPFNAPCSRITGFMRFLQLLSNYDWTYSPLVVDINNDLSPSDGKEINDNFLLKRKSQGENEQAVGPVMFLATVYDKASEAWTGLSPSALELKRLVAYARSSANLLMKLTFQEEIGPYRWECLLRTPLNNYDAIILLHKDKLAYPQRLLFSSEVGHGTQVAKGHAGKFFQPFLLPKDLKGRRPEELKNKLLVDFDPSRCFIKDLEKEFSTKFQLWHDSLGGDAIGLTWEKSYPSKRKQEEVVEKGYDPRKVLKAVGEVGKGFVRSIYFLKPPRLAN*