AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0159720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159720 MtrunA17_Chr1g0170881 78.302 424 83 2 11 434 1649 2063 0.0 663
Msa0159720 MtrunA17_Chr1g0170881 38.908 568 251 14 12 535 1372 1887 5.51e-90 303
Msa0159720 MtrunA17_Chr1g0170881 32.264 530 313 14 17 528 1136 1637 1.95e-50 187
Msa0159720 MtrunA17_Chr1g0170881 22.852 582 331 17 12 527 829 1358 1.62e-11 67.4
Msa0159720 MtrunA17_Chr1g0172231 82.071 396 70 1 2 397 997 1391 0.0 648
Msa0159720 MtrunA17_Chr1g0172231 39.703 539 266 13 12 537 753 1245 5.25e-87 293
Msa0159720 MtrunA17_Chr1g0172231 32.759 522 332 10 12 528 486 993 2.97e-59 213
Msa0159720 MtrunA17_Chr1g0172231 32.064 499 298 16 45 528 1 473 3.71e-46 174
Msa0159720 MtrunA17_Chr1g0172231 22.957 575 327 11 12 532 208 720 4.18e-22 100
Msa0159720 MtrunA17_Chr1g0163761 81.566 396 72 1 2 397 2165 2559 0.0 646
Msa0159720 MtrunA17_Chr1g0163761 39.703 539 262 14 12 535 1921 2411 1.67e-87 295
Msa0159720 MtrunA17_Chr1g0163761 32.184 522 335 9 12 528 1654 2161 1.63e-56 205
Msa0159720 MtrunA17_Chr1g0163761 32.961 537 316 17 8 528 1133 1641 1.01e-50 187
Msa0159720 MtrunA17_Chr1g0163761 25.000 560 334 16 12 532 1376 1888 2.99e-20 95.5
Msa0159720 MtrunA17_Chr1g0163891 81.313 396 73 1 2 397 2698 3092 0.0 645
Msa0159720 MtrunA17_Chr1g0163891 39.889 539 261 14 12 535 2454 2944 3.97e-87 294
Msa0159720 MtrunA17_Chr1g0163891 31.298 524 339 10 12 528 2185 2694 2.45e-52 192
Msa0159720 MtrunA17_Chr1g0163891 31.450 531 327 12 12 528 1665 2172 7.05e-52 191
Msa0159720 MtrunA17_Chr1g0163891 31.499 527 321 15 17 528 1151 1652 7.46e-51 188
Msa0159720 MtrunA17_Chr1g0163891 24.696 575 319 20 11 532 1386 1899 3.37e-22 101
Msa0159720 MtrunA17_Chr1g0163891 24.119 539 342 16 12 532 1932 2421 4.04e-19 92.0
Msa0159720 MtrunA17_Chr1g0164011 82.031 384 69 0 14 397 2098 2481 0.0 640
Msa0159720 MtrunA17_Chr1g0164011 39.890 544 258 14 12 537 1843 2335 4.74e-87 294
Msa0159720 MtrunA17_Chr1g0164011 32.203 531 312 17 17 528 1139 1640 5.10e-51 189
Msa0159720 MtrunA17_Chr1g0164011 28.261 552 330 17 11 528 1564 2083 9.44e-36 143
Msa0159720 MtrunA17_Chr1g0164011 24.396 414 225 14 12 376 1375 1749 3.85e-17 85.5
Msa0159720 MtrunA17_Chr1g0163931 79.897 388 73 3 11 397 1650 2033 0.0 619
Msa0159720 MtrunA17_Chr1g0163931 37.456 566 259 18 12 535 1373 1885 3.71e-80 274
Msa0159720 MtrunA17_Chr1g0163931 32.397 534 323 17 8 528 1130 1638 4.32e-51 189
Msa0159720 MtrunA17_Chr8g0359891 78.283 396 78 2 2 397 2535 2922 0.0 610
Msa0159720 MtrunA17_Chr8g0359891 38.447 541 263 15 12 537 2291 2776 1.26e-79 272
Msa0159720 MtrunA17_Chr8g0359891 32.443 524 331 10 12 528 2024 2531 3.87e-58 209
Msa0159720 MtrunA17_Chr8g0359891 32.203 531 312 16 17 528 1014 1515 3.07e-51 189
Msa0159720 MtrunA17_Chr8g0359891 31.120 527 319 16 17 528 177 674 3.30e-48 180
Msa0159720 MtrunA17_Chr8g0359891 32.314 523 309 11 12 528 1528 2011 8.42e-46 173
Msa0159720 MtrunA17_Chr8g0359891 25.041 603 312 16 12 527 687 1236 2.83e-30 126
Msa0159720 MtrunA17_Chr8g0359891 25.000 540 310 17 12 532 1795 2258 7.80e-20 94.0
Msa0159720 MtrunA17_Chr8g0359891 22.249 418 229 9 12 376 409 783 4.19e-14 75.9
Msa0159720 MtrunA17_Chr2g0323691 79.587 387 79 0 11 397 2690 3076 0.0 600
Msa0159720 MtrunA17_Chr2g0323691 37.778 540 274 15 12 537 2439 2930 1.39e-82 281
Msa0159720 MtrunA17_Chr2g0323691 32.083 533 340 11 1 528 1644 2159 2.01e-55 202
Msa0159720 MtrunA17_Chr2g0323691 29.367 521 350 8 12 528 2172 2678 1.49e-50 187
Msa0159720 MtrunA17_Chr2g0323691 30.476 525 329 15 17 528 1138 1639 5.25e-44 168
Msa0159720 MtrunA17_Chr2g0323691 24.774 553 338 17 4 532 1388 1886 2.11e-20 95.9
Msa0159720 MtrunA17_Chr1g0163801 83.714 350 57 0 40 389 71 420 0.0 594
Msa0159720 MtrunA17_Chr1g0163801 49.000 300 118 4 249 535 3 280 1.20e-76 248
Msa0159720 MtrunA17_Chr6g0474571 77.378 389 86 2 11 397 2691 3079 0.0 594
Msa0159720 MtrunA17_Chr6g0474571 37.158 549 266 15 12 537 2439 2931 2.54e-80 275
Msa0159720 MtrunA17_Chr6g0474571 33.645 535 306 17 14 528 1134 1639 3.21e-56 204
Msa0159720 MtrunA17_Chr6g0474571 30.813 529 333 10 12 528 2172 2679 1.00e-51 191
Msa0159720 MtrunA17_Chr6g0474571 32.397 534 327 15 7 528 1648 2159 6.33e-50 185
Msa0159720 MtrunA17_Chr6g0474571 23.509 570 330 16 12 532 1374 1886 6.74e-17 84.7
Msa0159720 MtrunA17_Chr6g0474571 23.037 573 342 18 12 527 830 1360 6.39e-15 78.6
Msa0159720 MtrunA17_Chr1g0172051 75.819 397 91 3 2 397 2679 3071 0.0 588
Msa0159720 MtrunA17_Chr1g0172051 37.230 556 278 19 1 537 2422 2925 7.88e-76 261
Msa0159720 MtrunA17_Chr1g0172051 31.801 522 335 10 14 528 2168 2675 4.34e-55 201
Msa0159720 MtrunA17_Chr1g0172051 30.957 533 322 16 12 528 1651 2153 9.84e-53 194
Msa0159720 MtrunA17_Chr1g0172051 30.550 527 325 16 17 528 1138 1638 1.18e-43 167
Msa0159720 MtrunA17_Chr1g0172051 24.727 550 342 15 4 532 1904 2402 8.62e-24 106
Msa0159720 MtrunA17_Chr1g0172051 23.280 567 321 17 12 527 1373 1876 4.86e-18 88.6
Msa0159720 MtrunA17_Chr1g0172051 23.276 580 333 19 12 527 830 1361 2.52e-12 70.1
Msa0159720 MtrunA17_Chr1g0164121 76.792 293 68 0 105 397 1 293 1.26e-159 457
Msa0159720 MtrunA17_Chr1g0164121 75.000 140 35 0 398 537 8 147 2.02e-69 225
Msa0159720 MtrunA17_Chr1g0167981 66.495 388 122 4 11 397 2695 3075 4.98e-156 493
Msa0159720 MtrunA17_Chr1g0167981 32.900 538 317 16 11 528 1649 2162 1.01e-56 205
Msa0159720 MtrunA17_Chr1g0167981 33.579 542 292 17 12 537 2440 2929 8.46e-56 202
Msa0159720 MtrunA17_Chr1g0167981 31.298 524 340 12 11 528 2174 2683 3.74e-53 195
Msa0159720 MtrunA17_Chr1g0167981 29.658 526 334 13 17 528 1134 1637 3.85e-47 177
Msa0159720 MtrunA17_Chr1g0167981 24.783 577 314 19 11 532 1371 1882 3.61e-24 107
Msa0159720 MtrunA17_Chr1g0167981 25.664 565 304 20 12 532 1915 2407 1.22e-23 106
Msa0159720 MtrunA17_Chr1g0167981 24.900 498 269 17 63 527 933 1358 6.72e-16 81.6
Msa0159720 MtrunA17_Chr1g0163691 76.963 191 44 0 51 241 1 191 2.41e-101 303
Msa0159720 MtrunA17_Chr1g0163691 56.459 209 72 2 320 527 1 191 8.58e-69 219
Msa0159720 MtrunA17_Chr1g0171091 58.446 296 120 2 105 398 1 295 5.00e-100 305
Msa0159720 MtrunA17_Chr1g0171091 53.623 138 63 1 400 537 10 146 1.08e-34 133
Msa0159720 MtrunA17_Chr2g0313541 34.375 384 242 3 10 393 1152 1525 1.44e-55 202
Msa0159720 MtrunA17_Chr2g0313541 25.284 352 204 10 192 538 1088 1385 1.07e-13 74.3
Msa0159720 MtrunA17_Chr2g0313421 32.041 387 254 3 10 396 254 631 6.40e-51 184
Msa0159720 MtrunA17_Chr2g0313421 23.958 480 294 16 63 527 54 477 1.56e-16 82.8
Msa0159720 MtrunA17_Chr1g0172161 35.052 388 230 9 17 396 177 550 1.31e-50 182
Msa0159720 MtrunA17_Chr1g0172161 24.859 354 207 12 179 527 100 399 3.40e-11 65.9
Msa0159720 MtrunA17_Chr2g0314301 34.031 382 243 3 12 393 1156 1528 1.85e-50 187
Msa0159720 MtrunA17_Chr2g0314301 25.532 470 279 14 66 527 971 1377 7.54e-18 87.8
Msa0159720 MtrunA17_Chr2g0313331 33.159 383 245 4 12 393 838 1210 2.72e-50 186
Msa0159720 MtrunA17_Chr2g0313331 25.714 350 200 9 179 524 763 1056 9.92e-13 71.2
Msa0159720 MtrunA17_Chr2g0313591 32.741 394 250 5 5 393 1135 1518 2.60e-49 183
Msa0159720 MtrunA17_Chr2g0313591 24.138 580 354 17 3 532 829 1372 5.14e-14 75.5
Msa0159720 MtrunA17_Chr1g0174531 82.000 100 15 1 69 168 1 97 4.94e-49 164
Msa0159720 MtrunA17_Chr1g0174531 51.327 113 34 2 342 454 6 97 9.01e-26 101
Msa0159720 MtrunA17_Chr1g0163991 30.095 525 336 14 17 530 177 681 4.17e-48 179
Msa0159720 MtrunA17_Chr1g0163991 34.884 387 228 9 17 396 881 1250 1.72e-46 175
Msa0159720 MtrunA17_Chr1g0163991 23.748 539 346 16 12 527 603 1099 2.85e-12 69.7
Msa0159720 MtrunA17_Chr2g0313311 32.468 385 251 3 12 396 1126 1501 4.81e-48 179
Msa0159720 MtrunA17_Chr2g0313311 23.498 566 323 20 14 527 840 1347 1.02e-14 77.8
Msa0159720 MtrunA17_Chr2g0313351 31.783 387 255 3 10 396 1147 1524 2.27e-46 174
Msa0159720 MtrunA17_Chr2g0313351 25.067 371 220 9 162 527 1053 1370 1.08e-15 80.9
Msa0159720 MtrunA17_Chr1g0174511 32.022 534 315 17 14 528 1132 1636 2.43e-46 174
Msa0159720 MtrunA17_Chr1g0174511 24.330 485 293 16 4 467 1385 1816 3.34e-18 89.0
Msa0159720 MtrunA17_Chr1g0174511 27.099 262 157 7 273 527 1123 1357 3.67e-11 66.2
Msa0159720 MtrunA17_Chr2g0313481 31.937 382 251 3 12 393 1161 1533 7.31e-46 173
Msa0159720 MtrunA17_Chr2g0313481 24.008 479 279 15 66 529 976 1384 1.28e-11 67.8
Msa0159720 MtrunA17_Chr1g0172141 34.536 388 233 9 17 396 1139 1513 3.78e-45 171
Msa0159720 MtrunA17_Chr1g0163791 31.132 530 319 17 17 528 1135 1636 4.54e-43 165
Msa0159720 MtrunA17_Chr1g0163791 41.053 95 56 0 12 106 1649 1743 2.32e-16 83.2
Msa0159720 MtrunA17_Chr1g0163791 23.077 390 254 11 4 376 1385 1745 1.52e-12 70.9
Msa0159720 MtrunA17_Chr2g0313491 31.926 379 249 3 11 389 1110 1479 4.91e-42 162
Msa0159720 MtrunA17_Chr2g0313491 27.140 549 307 14 12 524 838 1329 7.28e-26 112
Msa0159720 MtrunA17_Chr1g0172101 33.841 328 198 7 74 396 5 318 5.32e-41 151
Msa0159720 MtrunA17_Chr1g0171081 72.941 85 23 0 314 398 1 85 1.09e-35 129
Msa0159720 MtrunA17_Chr8g0348201 30.179 391 232 11 11 390 838 1198 3.51e-35 141
Msa0159720 MtrunA17_Chr8g0348201 28.037 535 317 18 17 528 337 826 2.98e-29 123
Msa0159720 MtrunA17_Chr8g0348251 31.701 388 228 13 11 390 390 748 2.16e-34 138
Msa0159720 MtrunA17_Chr8g0348251 29.630 378 228 14 171 528 19 378 1.95e-20 95.5
Msa0159720 MtrunA17_Chr2g0313471 34.222 225 145 2 167 391 15 236 2.16e-29 116
Msa0159720 MtrunA17_Chr1g0172071 32.389 247 152 5 154 396 9 244 5.47e-28 113
Msa0159720 MtrunA17_Chr4g0011631 30.633 395 217 14 11 391 14 365 1.04e-27 115
Msa0159720 MtrunA17_Chr4g0011661 30.155 388 215 13 17 391 20 364 4.82e-25 108
Msa0159720 MtrunA17_Chr1g0167331 29.321 324 150 8 7 327 101 348 6.96e-25 106
Msa0159720 MtrunA17_Chr1g0174521 39.355 155 93 1 247 401 2 155 1.71e-21 94.0
Msa0159720 MtrunA17_Chr2g0314131 40.714 140 81 2 219 358 17 154 2.28e-21 90.9
Msa0159720 MtrunA17_Chr1g0163651 34.518 197 108 6 45 232 1 185 4.48e-18 82.8
Msa0159720 MtrunA17_Chr1g0172081 35.135 148 80 3 12 154 127 263 1.41e-17 82.8
Msa0159720 MtrunA17_Chr1g0170961 35.036 137 87 2 12 147 9 144 2.43e-17 79.3
Msa0159720 MtrunA17_Chr2g0313461 40.625 96 57 0 11 106 1144 1239 1.53e-16 83.6
Msa0159720 MtrunA17_Chr8g0359871 32.298 161 106 2 12 170 67 226 1.44e-15 76.3
Msa0159720 MtrunA17_Chr8g0359871 23.735 257 153 5 201 456 12 226 1.87e-12 67.0
Msa0159720 MtrunA17_Chr2g0314141 39.048 105 61 2 12 115 88 190 3.18e-15 74.3
Msa0159720 MtrunA17_Chr1g0164101 38.281 128 74 3 17 141 108 233 5.92e-15 74.7
Msa0159720 MtrunA17_Chr2g0314151 37.121 132 77 3 268 397 1 128 2.63e-14 70.9
Msa0159720 MtrunA17_Chr5g0414911 24.198 405 231 13 12 374 1188 1558 1.33e-12 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 89 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCACAAGTTTAACCTATT+TGG 0.176958 1_4:+30579622 Msa0159720:CDS
TTGCTAGACTTGATCGTTAA+AGG 0.190748 1_4:+30579881 Msa0159720:CDS
ACTTGAAATGTTTCAACATT+AGG 0.271689 1_4:-30579374 None:intergenic
ACTTGAAATGTTTCAACATT+AGG 0.281101 1_4:-30584726 None:intergenic
CCAGTCATCCACTTCCAAAT+AGG 0.308797 1_4:-30579636 None:intergenic
AGATCTGGGCATAGTGAATA+TGG 0.318003 1_4:-30578791 None:intergenic
CAATTTCATAACTTTCAATT+GGG 0.338355 1_4:-30578909 None:intergenic
GAAAGATATTTAACAAGCTT+TGG 0.338846 1_4:-30578769 None:intergenic
ATTTGAAAACCTGGAATACT+TGG 0.343754 1_4:+30579793 Msa0159720:CDS
GCAATTTCATAACTTTCAAT+TGG 0.349377 1_4:-30578910 None:intergenic
CACGTAACTCTTCAAGATAT+TGG 0.351188 1_4:-30579553 None:intergenic
CAACATTAGGAAATATTGTA+TGG 0.354619 1_4:-30579361 None:intergenic
CAACATTAGGAAATATTGTA+TGG 0.354619 1_4:-30584713 None:intergenic
GAGCCCCAACCTGGTGGAAT+TGG 0.362008 1_4:+30579214 Msa0159720:CDS
GAGCCCCAACCTGGTGGAAT+TGG 0.362008 1_4:+30584566 Msa0159720:CDS
GAATGTAGCTAATAAATGTT+AGG 0.362406 1_4:-30578636 None:intergenic
AGTGCCAATTCCACCAGGTT+GGG 0.367473 1_4:-30579218 None:intergenic
AGTGCCAATTCCACCAGGTT+GGG 0.367473 1_4:-30584570 None:intergenic
TATAATGTCTTGTGGAGTTA+AGG 0.373063 1_4:+30578835 Msa0159720:CDS
CTAAATGGCATAGATATGTT+TGG 0.376603 1_4:+30584591 Msa0159720:CDS
CTTCAATGAAGGGTAATCTA+AGG 0.380866 1_4:-30578975 None:intergenic
AAGTAAATTCCAAGTATTCC+AGG 0.383497 1_4:-30579802 None:intergenic
TGGAAAAGCTCGAGCACATC+TGG 0.383534 1_4:+30584850 Msa0159720:CDS
ATTTCAAGATGTCCAAGATC+TGG 0.385363 1_4:-30578806 None:intergenic
CTGGTGGAATTGGCACTAAA+TGG 0.387913 1_4:+30579224 Msa0159720:CDS
CTGGTGGAATTGGCACTAAA+TGG 0.387913 1_4:+30584576 Msa0159720:CDS
TCGGAGAAGAAAATGTGATA+TGG 0.392230 1_4:+30579969 Msa0159720:CDS
CTAAATGGCATAGTTATGTT+GGG 0.409132 1_4:+30579239 Msa0159720:CDS
CAATACAAAACAGGGGTTGT+TGG 0.409389 1_4:-30579099 None:intergenic
CAATACAAAACAGGGGTTGT+TGG 0.409389 1_4:-30584448 None:intergenic
TTACTCGTTTGATGAAAATC+AGG 0.409468 1_4:+30579066 Msa0159720:CDS
GGTACCAAGCTTAGCAAACT+TGG 0.414628 1_4:-30579587 None:intergenic
TTATATACACAAACTTGGTT+AGG 0.416951 1_4:+30578584 Msa0159720:five_prime_UTR
TGGAAAAGTTCAAGCACATC+TGG 0.427532 1_4:+30579498 Msa0159720:CDS
TAAATGGCATAGATATGTTT+GGG 0.427588 1_4:+30584592 Msa0159720:CDS
GAAACATTGTTCCCCACTAA+AGG 0.429589 1_4:+30579413 Msa0159720:CDS
ATAACTTGTAGTTCCTTTAG+TGG 0.430782 1_4:-30584778 None:intergenic
AAATCATTTAGAAGAGTAGT+TGG 0.431860 1_4:-30584690 None:intergenic
TATTCACTATGCCCAGATCT+TGG 0.436096 1_4:+30578794 Msa0159720:CDS
GAAACATTGTTGCCCACTAA+AGG 0.443286 1_4:+30584765 Msa0159720:CDS
ACTAAATGGCATAGTTATGT+TGG 0.445525 1_4:+30579238 Msa0159720:CDS
GTTTGAGAAGCTTCTGCTAT+GGG 0.448087 1_4:+30579834 Msa0159720:CDS
ATAACTTGTGGTTCCTTTAG+TGG 0.450843 1_4:-30579426 None:intergenic
TAACTTGTGGTTCCTTTAGT+GGG 0.456441 1_4:-30579425 None:intergenic
GTGCCAATTCCACCAGGTTG+GGG 0.456682 1_4:-30579217 None:intergenic
GTGCCAATTCCACCAGGTTG+GGG 0.456682 1_4:-30584569 None:intergenic
TTGTCCAAGTTTGCTAAGCT+TGG 0.469140 1_4:+30579583 Msa0159720:CDS
CTGACAAGAGGATTATTCAA+TGG 0.472230 1_4:-30584885 None:intergenic
TTACTCGGTTGATGAAAATC+AGG 0.473315 1_4:+30584415 Msa0159720:CDS
AATGTTTCAAAAGAACTATT+AGG 0.473937 1_4:-30584750 None:intergenic
CCTATTTGGAAGTGGATGAC+TGG 0.482956 1_4:+30579636 Msa0159720:CDS
ATTGTTGCAGTGGAAGAAGT+TGG 0.500969 1_4:+30578860 Msa0159720:CDS
AATCTTAAGAGTTTCTATCA+AGG 0.504929 1_4:+30578944 Msa0159720:CDS
ACATTCAAAGTCTTCAATGA+AGG 0.506881 1_4:-30578986 None:intergenic
AAGTTTAACCTATTTGGAAG+TGG 0.512044 1_4:+30579628 Msa0159720:CDS
AAATCATTCAGAAGAGTAGT+TGG 0.515592 1_4:-30579338 None:intergenic
AAACATTGTATTTGAAAACC+TGG 0.517978 1_4:+30579784 Msa0159720:CDS
GTTATGTTGGGGATATTGAA+TGG 0.522534 1_4:+30579251 Msa0159720:CDS
AATGAATTGTGAGAAGATGT+TGG 0.528127 1_4:+30579727 Msa0159720:CDS
TAGTGCCAATTCCACCAGGT+TGG 0.531193 1_4:-30579219 None:intergenic
TAGTGCCAATTCCACCAGGT+TGG 0.531193 1_4:-30584571 None:intergenic
TAACTTGTAGTTCCTTTAGT+GGG 0.535903 1_4:-30584777 None:intergenic
CCTCTTTATATTCTGACAAG+AGG 0.535927 1_4:-30584897 None:intergenic
AGTTTGAGAAGCTTCTGCTA+TGG 0.535941 1_4:+30579833 Msa0159720:CDS
TTTCAAGATGTCCAAGATCT+GGG 0.536925 1_4:-30578805 None:intergenic
CATTTAGTGCCAATTCCACC+AGG 0.539634 1_4:-30579223 None:intergenic
CATTTAGTGCCAATTCCACC+AGG 0.539634 1_4:-30584575 None:intergenic
TTAGCTTATATACACAAACT+TGG 0.540820 1_4:+30578579 Msa0159720:five_prime_UTR
AGACTTGCAACAACCTTACT+CGG 0.540968 1_4:+30584400 Msa0159720:intron
GATATGTTTGGGATAGTGAA+TGG 0.542841 1_4:+30584603 Msa0159720:CDS
CATTCAAAGTCTTCAATGAA+GGG 0.551059 1_4:-30578985 None:intergenic
GAAGAAAATGTGATATGGAA+AGG 0.556903 1_4:+30579974 Msa0159720:CDS
TTGCAAACTAAGATAACTTG+TGG 0.558067 1_4:-30579438 None:intergenic
AAAGCTCGAGCACATCTGGC+AGG 0.559181 1_4:+30584854 Msa0159720:CDS
AGTGGAAGAAGTTGGATCAA+TGG 0.560559 1_4:+30578868 Msa0159720:CDS
AATTTCATAACTTTCAATTG+GGG 0.578748 1_4:-30578908 None:intergenic
CGATCAAGTCTAGCAACGAT+GGG 0.581051 1_4:-30579874 None:intergenic
ACGATCAAGTCTAGCAACGA+TGG 0.581408 1_4:-30579875 None:intergenic
AGTTAAGGAAATTGTTGCAG+TGG 0.586807 1_4:+30578850 Msa0159720:CDS
AACTTGTGGTTCCTTTAGTG+GGG 0.592481 1_4:-30579424 None:intergenic
CAAATCAAATAAGAAAGTTG+TGG 0.596512 1_4:+30579465 Msa0159720:CDS
ATACTTGATATAATGTCTTG+TGG 0.601528 1_4:+30578827 Msa0159720:CDS
TGGAACAGAGGATTATCCAA+TGG 0.618759 1_4:-30579533 None:intergenic
TCTTCAAGATATTGGAACAG+AGG 0.621470 1_4:-30579545 None:intergenic
TCAGTTGAGCCCCAACCTGG+TGG 0.621771 1_4:+30579208 Msa0159720:intron
TCAGTTGAGCCCCAACCTGG+TGG 0.621771 1_4:+30584560 Msa0159720:intron
TAAATGGCATAGTTATGTTG+GGG 0.631065 1_4:+30579240 Msa0159720:CDS
CTTGTGAAAGATGTCGACAA+TGG 0.644522 1_4:-30579608 None:intergenic
GATGAGAAGATCTTCATCTG+AGG 0.653457 1_4:-30579908 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTATATATATTAAA+AGG - chr1_4:30580906-30580925 None:intergenic 0.0%
!! AAATAAAATTATCTAATGAA+AGG + chr1_4:30580200-30580219 Msa0159720:intron 10.0%
!! AATAAAATTATCTAATGAAA+GGG + chr1_4:30580201-30580220 Msa0159720:intron 10.0%
!!! ATTTATTTTTTAAACAGAAA+AGG - chr1_4:30580235-30580254 None:intergenic 10.0%
!! AAAACAATAAGATATATATT+TGG - chr1_4:30581102-30581121 None:intergenic 10.0%
!! TTATTATTTGTTTATTAAGA+GGG - chr1_4:30581167-30581186 None:intergenic 10.0%
!! ATACAAAAAAATAATAACAT+GGG - chr1_4:30584493-30584512 None:intergenic 10.0%
!! CACATACAAAAAAATAATAA+GGG - chr1_4:30579144-30579163 None:intergenic 15.0%
!! ACACATACAAAAAAATAATA+AGG - chr1_4:30579145-30579164 None:intergenic 15.0%
!! ATTATTCACTTAATTAAACA+AGG + chr1_4:30580077-30580096 Msa0159720:intron 15.0%
!!! AAACATCTTATTTTTTCAAT+CGG + chr1_4:30580727-30580746 Msa0159720:intron 15.0%
!! ACCTTATTAATATTAATAAC+CGG - chr1_4:30580846-30580865 None:intergenic 15.0%
!! GTTATTATTTGTTTATTAAG+AGG - chr1_4:30581168-30581187 None:intergenic 15.0%
!! CATATTACTTCTTTAATAAT+AGG - chr1_4:30582647-30582666 None:intergenic 15.0%
!! CTATTATTAAAGAAGTAATA+TGG + chr1_4:30582645-30582664 Msa0159720:intron 15.0%
!! AAATTAACAAACCTAAAATT+GGG - chr1_4:30583139-30583158 None:intergenic 15.0%
!! AAAATTAACAAACCTAAAAT+TGG - chr1_4:30583140-30583159 None:intergenic 15.0%
!!! TTTTAGGTTTGTTAATTTTT+AGG + chr1_4:30583141-30583160 Msa0159720:intron 15.0%
!!! ATTTTTTTTAACCAAAAAAG+AGG - chr1_4:30583244-30583263 None:intergenic 15.0%
!!! TTATAAAGTTTGGATTTTTA+GGG - chr1_4:30583267-30583286 None:intergenic 15.0%
!! AAAATTTCAGTTATAAAGTT+TGG - chr1_4:30583277-30583296 None:intergenic 15.0%
!! CATACAAAAAAATAATAACA+TGG - chr1_4:30584494-30584513 None:intergenic 15.0%
!! AATTTCATAACTTTCAATTG+GGG - chr1_4:30578911-30578930 None:intergenic 20.0%
!! CAATTTCATAACTTTCAATT+GGG - chr1_4:30578912-30578931 None:intergenic 20.0%
!! AAAAAATAATAAGGGATGAT+GGG - chr1_4:30579136-30579155 None:intergenic 20.0%
!! AAAAAAATAATAAGGGATGA+TGG - chr1_4:30579137-30579156 None:intergenic 20.0%
!!! GCTAGTATTTATTTTCATTT+TGG + chr1_4:30579173-30579192 Msa0159720:intron 20.0%
!!! TTAATGTTTTGATTTGAACT+AGG - chr1_4:30579703-30579722 None:intergenic 20.0%
!! TCAACAAATATTCATAGAAA+AGG + chr1_4:30580015-30580034 Msa0159720:intron 20.0%
!!! AGTGACTTTGAAATTAATTA+TGG + chr1_4:30580131-30580150 Msa0159720:intron 20.0%
!!! GTCATTTTAAAAATATGCTT+CGG + chr1_4:30580444-30580463 Msa0159720:intron 20.0%
!! ACCGGTTATTAATATTAATA+AGG + chr1_4:30580842-30580861 Msa0159720:intron 20.0%
!! AGACATTGTATAATATATGT+AGG + chr1_4:30580963-30580982 Msa0159720:intron 20.0%
!! GACATTGTATAATATATGTA+GGG + chr1_4:30580964-30580983 Msa0159720:intron 20.0%
!! ACATTGTATAATATATGTAG+GGG + chr1_4:30580965-30580984 Msa0159720:intron 20.0%
!! AGATGAATAAATAGATGTTT+GGG - chr1_4:30581004-30581023 None:intergenic 20.0%
!! AAGATGAATAAATAGATGTT+TGG - chr1_4:30581005-30581024 None:intergenic 20.0%
!! CATCTATTTATTCATCTTAT+AGG + chr1_4:30581007-30581026 Msa0159720:intron 20.0%
!! ACAATAAGATATATATTTGG+AGG - chr1_4:30581099-30581118 None:intergenic 20.0%
!!! AATGGATAAGAAATTTTCTT+TGG + chr1_4:30581508-30581527 Msa0159720:intron 20.0%
!! ACATACACTCAAAAAATAAA+TGG - chr1_4:30582289-30582308 None:intergenic 20.0%
!! TTAATGACAAAAAACCAAAT+TGG + chr1_4:30582489-30582508 Msa0159720:intron 20.0%
!! ATATCATTACTCATATCTTT+AGG + chr1_4:30582993-30583012 Msa0159720:intron 20.0%
!! TATCATTACTCATATCTTTA+GGG + chr1_4:30582994-30583013 Msa0159720:intron 20.0%
!!! TCTCTATCTATAATATTTTG+AGG + chr1_4:30583200-30583219 Msa0159720:intron 20.0%
!!! GTTATAAAGTTTGGATTTTT+AGG - chr1_4:30583268-30583287 None:intergenic 20.0%
!!! TCAATTCAATTAACTTTTGT+GGG - chr1_4:30583309-30583328 None:intergenic 20.0%
!!! TTCAATTCAATTAACTTTTG+TGG - chr1_4:30583310-30583329 None:intergenic 20.0%
!!! AAGCAACTGAAATAATTTTT+GGG + chr1_4:30583800-30583819 Msa0159720:intron 20.0%
!!! AAATAATTTTTGGGTTTCTA+GGG + chr1_4:30583809-30583828 Msa0159720:intron 20.0%
!! AATTTCATAACTTTCAATTG+GGG - chr1_4:30578911-30578930 None:intergenic 20.0%
!! CAATTTCATAACTTTCAATT+GGG - chr1_4:30578912-30578931 None:intergenic 20.0%
!! AATGTTTCAAAAGAACTATT+AGG - chr1_4:30579401-30579420 None:intergenic 20.0%
! TTAGCTTATATACACAAACT+TGG + chr1_4:30578579-30578598 Msa0159720:five_prime_UTR 25.0%
! TTATATACACAAACTTGGTT+AGG + chr1_4:30578584-30578603 Msa0159720:five_prime_UTR 25.0%
! GAATGTAGCTAATAAATGTT+AGG - chr1_4:30578639-30578658 None:intergenic 25.0%
! GAAAGATATTTAACAAGCTT+TGG - chr1_4:30578772-30578791 None:intergenic 25.0%
! ATACTTGATATAATGTCTTG+TGG + chr1_4:30578827-30578846 Msa0159720:CDS 25.0%
! GCAATTTCATAACTTTCAAT+TGG - chr1_4:30578913-30578932 None:intergenic 25.0%
! AATCTTAAGAGTTTCTATCA+AGG + chr1_4:30578944-30578963 Msa0159720:CDS 25.0%
!! TACCTTTTCAATACAAAACA+GGG - chr1_4:30579110-30579129 None:intergenic 25.0%
!! TTACCTTTTCAATACAAAAC+AGG - chr1_4:30579111-30579130 None:intergenic 25.0%
! CAACATTAGGAAATATTGTA+TGG - chr1_4:30579364-30579383 None:intergenic 25.0%
! ACTTGAAATGTTTCAACATT+AGG - chr1_4:30579377-30579396 None:intergenic 25.0%
! CAAATCAAATAAGAAAGTTG+TGG + chr1_4:30579465-30579484 Msa0159720:CDS 25.0%
! TTTCACAAGTTTAACCTATT+TGG + chr1_4:30579622-30579641 Msa0159720:CDS 25.0%
! AAACATTGTATTTGAAAACC+TGG + chr1_4:30579784-30579803 Msa0159720:CDS 25.0%
!!! ATATTAATTTGGTGCATGTT+TGG + chr1_4:30580106-30580125 Msa0159720:intron 25.0%
! TGTTTGAAAAGAGAAGAATT+TGG - chr1_4:30580712-30580731 None:intergenic 25.0%
! GATGAATAAATAGATGTTTG+GGG - chr1_4:30581003-30581022 None:intergenic 25.0%
!!! TTTTTTGTCAAGTAAGTTAG+TGG - chr1_4:30581044-30581063 None:intergenic 25.0%
! GAGTAAGATAACACAATTAT+TGG + chr1_4:30581131-30581150 Msa0159720:intron 25.0%
!!! AACAACTGATTTTATCAACT+AGG - chr1_4:30581421-30581440 None:intergenic 25.0%
!! ATTGTTTTCAACAAAGAAAC+CGG - chr1_4:30581483-30581502 None:intergenic 25.0%
! TGTTGAAAACAATTGAGAAA+TGG + chr1_4:30581490-30581509 Msa0159720:intron 25.0%
!!! ATAAGAAATTTTCTTTGGAG+CGG + chr1_4:30581513-30581532 Msa0159720:intron 25.0%
! TTTCAACTTGAAATTGTGTT+GGG + chr1_4:30581641-30581660 Msa0159720:intron 25.0%
! ACTTTATCATCAACAATCAT+TGG + chr1_4:30581928-30581947 Msa0159720:intron 25.0%
! TAATTAACCAAAATATCTGC+AGG - chr1_4:30581960-30581979 None:intergenic 25.0%
! TAGTAAATAATCTCAGATCA+GGG - chr1_4:30581983-30582002 None:intergenic 25.0%
! TTAGTAAATAATCTCAGATC+AGG - chr1_4:30581984-30582003 None:intergenic 25.0%
!!! ATGATGTCTTTTAAAATCGT+AGG - chr1_4:30582090-30582109 None:intergenic 25.0%
! CTCAATATGTTGAAAACAAA+GGG - chr1_4:30582258-30582277 None:intergenic 25.0%
! TCTCAATATGTTGAAAACAA+AGG - chr1_4:30582259-30582278 None:intergenic 25.0%
! ACACTCAAAAAATAAATGGA+AGG - chr1_4:30582285-30582304 None:intergenic 25.0%
! AATAACTATCTTACATTGAG+GGG - chr1_4:30582411-30582430 None:intergenic 25.0%
! GAATAACTATCTTACATTGA+GGG - chr1_4:30582412-30582431 None:intergenic 25.0%
! TGAATAACTATCTTACATTG+AGG - chr1_4:30582413-30582432 None:intergenic 25.0%
! TTAATATCATCAGCACTATT+TGG + chr1_4:30582444-30582463 Msa0159720:intron 25.0%
! TATGAAATCTCTTACAGATA+AGG - chr1_4:30582582-30582601 None:intergenic 25.0%
! TCTTTAATAATAGGAGCTTT+GGG - chr1_4:30582638-30582657 None:intergenic 25.0%
! TTCTTTAATAATAGGAGCTT+TGG - chr1_4:30582639-30582658 None:intergenic 25.0%
!!! AATTTTTCCAACTGTTTCTA+AGG - chr1_4:30582946-30582965 None:intergenic 25.0%
! TAATGATATAGTTCATGTGT+TGG - chr1_4:30582982-30583001 None:intergenic 25.0%
!!! TAGGTTTGTTAATTTTTAGG+AGG + chr1_4:30583144-30583163 Msa0159720:intron 25.0%
!!! AGGTTTGTTAATTTTTAGGA+GGG + chr1_4:30583145-30583164 Msa0159720:intron 25.0%
! AATTCTTGAAGCATGTAATT+GGG - chr1_4:30583624-30583643 None:intergenic 25.0%
!! CAAGCAACTGAAATAATTTT+TGG + chr1_4:30583799-30583818 Msa0159720:intron 25.0%
!!! GAAATAATTTTTGGGTTTCT+AGG + chr1_4:30583808-30583827 Msa0159720:intron 25.0%
! TTAGCTTATATACACAAACT+TGG + chr1_4:30578579-30578598 Msa0159720:five_prime_UTR 25.0%
! TTATATACACAAACTTGGTT+AGG + chr1_4:30578584-30578603 Msa0159720:five_prime_UTR 25.0%
! GAAAGATATTTAACAAGCTT+TGG - chr1_4:30578772-30578791 None:intergenic 25.0%
! ATACTTGATATAATGTCTTG+TGG + chr1_4:30578827-30578846 Msa0159720:CDS 25.0%
! GCAATTTCATAACTTTCAAT+TGG - chr1_4:30578913-30578932 None:intergenic 25.0%
! AATCTTAAGAGTTTCTATCA+AGG + chr1_4:30578944-30578963 Msa0159720:CDS 25.0%
!! TACCTTTTCAATACAAAACA+GGG - chr1_4:30579110-30579129 None:intergenic 25.0%
!! TTACCTTTTCAATACAAAAC+AGG - chr1_4:30579111-30579130 None:intergenic 25.0%
! AAATAATAACATGGGATGAT+GGG - chr1_4:30584485-30584504 None:intergenic 25.0%
! AAAATAATAACATGGGATGA+TGG - chr1_4:30584486-30584505 None:intergenic 25.0%
!!! GCTAGTATTTATTTTCATTC+TGG + chr1_4:30584525-30584544 Msa0159720:intron 25.0%
! TAAATGGCATAGATATGTTT+GGG + chr1_4:30584592-30584611 Msa0159720:CDS 25.0%
! AAATCATTTAGAAGAGTAGT+TGG - chr1_4:30584693-30584712 None:intergenic 25.0%
! CAACATTAGGAAATATTGTA+TGG - chr1_4:30579364-30579383 None:intergenic 25.0%
! ACTTGAAATGTTTCAACATT+AGG - chr1_4:30579377-30579396 None:intergenic 25.0%
!! AAAGTTATGCCTTTTTGAAT+TGG + chr1_4:30584830-30584849 Msa0159720:CDS 25.0%
!!! CTTTCAGTTAGTTTGTTTTG+AGG - chr1_4:30578680-30578699 None:intergenic 30.0%
TATAATGTCTTGTGGAGTTA+AGG + chr1_4:30578835-30578854 Msa0159720:CDS 30.0%
CATTCAAAGTCTTCAATGAA+GGG - chr1_4:30578988-30579007 None:intergenic 30.0%
ACATTCAAAGTCTTCAATGA+AGG - chr1_4:30578989-30579008 None:intergenic 30.0%
! TGATTTTCATCAAACGAGTA+AGG - chr1_4:30579067-30579086 None:intergenic 30.0%
TTACTCGTTTGATGAAAATC+AGG + chr1_4:30579066-30579085 Msa0159720:CDS 30.0%
! ACCTTTTCAATACAAAACAG+GGG - chr1_4:30579109-30579128 None:intergenic 30.0%
ACTAAATGGCATAGTTATGT+TGG + chr1_4:30579238-30579257 Msa0159720:CDS 30.0%
CTAAATGGCATAGTTATGTT+GGG + chr1_4:30579239-30579258 Msa0159720:CDS 30.0%
TAAATGGCATAGTTATGTTG+GGG + chr1_4:30579240-30579259 Msa0159720:CDS 30.0%
AAATCATTCAGAAGAGTAGT+TGG - chr1_4:30579341-30579360 None:intergenic 30.0%
TTGCAAACTAAGATAACTTG+TGG - chr1_4:30579441-30579460 None:intergenic 30.0%
! AAAGTTGTGGCTTTTTGAAT+TGG + chr1_4:30579478-30579497 Msa0159720:CDS 30.0%
AAGTTTAACCTATTTGGAAG+TGG + chr1_4:30579628-30579647 Msa0159720:CDS 30.0%
AATGAATTGTGAGAAGATGT+TGG + chr1_4:30579727-30579746 Msa0159720:CDS 30.0%
ATTTGAAAACCTGGAATACT+TGG + chr1_4:30579793-30579812 Msa0159720:CDS 30.0%
AAGTAAATTCCAAGTATTCC+AGG - chr1_4:30579805-30579824 None:intergenic 30.0%
! ACATCAATTTTTGTTAGGCA+TGG - chr1_4:30579950-30579969 None:intergenic 30.0%
TGCCTAACAAAAATTGATGT+CGG + chr1_4:30579950-30579969 Msa0159720:CDS 30.0%
GAAGAAAATGTGATATGGAA+AGG + chr1_4:30579974-30579993 Msa0159720:CDS 30.0%
CAAGGCTCACAATATTAATT+TGG + chr1_4:30580095-30580114 Msa0159720:intron 30.0%
CTACAAAGTTTAGCACTAAA+TGG + chr1_4:30580159-30580178 Msa0159720:intron 30.0%
CAAACGTTACCAAATAGTTA+GGG + chr1_4:30580561-30580580 Msa0159720:intron 30.0%
AAACGTTACCAAATAGTTAG+GGG + chr1_4:30580562-30580581 Msa0159720:intron 30.0%
TATATCATCCCCTAACTATT+TGG - chr1_4:30580573-30580592 None:intergenic 30.0%
GTGTAACTTAACTAGAATGT+GGG - chr1_4:30580637-30580656 None:intergenic 30.0%
TGTGTAACTTAACTAGAATG+TGG - chr1_4:30580638-30580657 None:intergenic 30.0%
!! AAAGAGAAGAATTTGGTGTT+GGG - chr1_4:30580705-30580724 None:intergenic 30.0%
!! AAAAGAGAAGAATTTGGTGT+TGG - chr1_4:30580706-30580725 None:intergenic 30.0%
! TTCCTTCTCTTTTTAATCAC+CGG + chr1_4:30580824-30580843 Msa0159720:intron 30.0%
ACGAACTAAGTTAAACTCAA+GGG - chr1_4:30580941-30580960 None:intergenic 30.0%
TACGAACTAAGTTAAACTCA+AGG - chr1_4:30580942-30580961 None:intergenic 30.0%
TGTATAATATATGTAGGGGT+CGG + chr1_4:30580969-30580988 Msa0159720:intron 30.0%
AATTGTGTTATCTTACTCGA+AGG - chr1_4:30581129-30581148 None:intergenic 30.0%
! TAGGTCTTCCTTTGAAAATA+GGG - chr1_4:30581311-30581330 None:intergenic 30.0%
! TTAGGTCTTCCTTTGAAAAT+AGG - chr1_4:30581312-30581331 None:intergenic 30.0%
!!! TAAGAAATTTTCTTTGGAGC+GGG + chr1_4:30581514-30581533 Msa0159720:intron 30.0%
CTTTCAACTTGAAATTGTGT+TGG + chr1_4:30581640-30581659 Msa0159720:intron 30.0%
!! TACTCTAGCTTTAAGAATTC+TGG - chr1_4:30581694-30581713 None:intergenic 30.0%
CTTAAAGCTAGAGTAATAAG+AGG + chr1_4:30581699-30581718 Msa0159720:intron 30.0%
ATATTCTCATCTCTTTGGAT+TGG + chr1_4:30581744-30581763 Msa0159720:intron 30.0%
GAATGAATTTCTAACTGTGA+TGG + chr1_4:30581773-30581792 Msa0159720:intron 30.0%
! ATGGTAGTAATATCCACTTT+TGG + chr1_4:30581820-30581839 Msa0159720:intron 30.0%
!! TGGTAGTAATATCCACTTTT+GGG + chr1_4:30581821-30581840 Msa0159720:intron 30.0%
AGTGTGAAGACAAGTTAATT+TGG + chr1_4:30582027-30582046 Msa0159720:intron 30.0%
!! CGATTTTAAAAGACATCATG+CGG + chr1_4:30582091-30582110 Msa0159720:intron 30.0%
!! GTATGTTCGCTTTTAAACTA+TGG + chr1_4:30582303-30582322 Msa0159720:intron 30.0%
! TTTTGTCATTAAACCTGCAT+TGG - chr1_4:30582481-30582500 None:intergenic 30.0%
ATGACAAAAAACCAAATTGG+AGG + chr1_4:30582492-30582511 Msa0159720:intron 30.0%
TTGATCCAATCATTAATAGG+AGG - chr1_4:30582674-30582693 None:intergenic 30.0%
CACTTGATCCAATCATTAAT+AGG - chr1_4:30582677-30582696 None:intergenic 30.0%
TGCAGATGTATTAAAAGTAG+AGG - chr1_4:30582714-30582733 None:intergenic 30.0%
! ACTTTTAATACATCTGCATG+TGG + chr1_4:30582716-30582735 Msa0159720:intron 30.0%
! CTTTTAATACATCTGCATGT+GGG + chr1_4:30582717-30582736 Msa0159720:intron 30.0%
! TTTTAATACATCTGCATGTG+GGG + chr1_4:30582718-30582737 Msa0159720:intron 30.0%
! CATTTTCAGAAACTCAAACT+CGG + chr1_4:30582742-30582761 Msa0159720:intron 30.0%
! ATTACTCATATCTTTAGGGA+AGG + chr1_4:30582998-30583017 Msa0159720:intron 30.0%
! TTACTCATATCTTTAGGGAA+GGG + chr1_4:30582999-30583018 Msa0159720:intron 30.0%
! TTTTATGGTCAAGATAGACT+TGG + chr1_4:30583109-30583128 Msa0159720:intron 30.0%
TTTATGGTCAAGATAGACTT+GGG + chr1_4:30583110-30583129 Msa0159720:intron 30.0%
!! TGTTAATTTTTAGGAGGGTT+TGG + chr1_4:30583150-30583169 Msa0159720:intron 30.0%
TAGATAGAGAGAAAACACAA+AGG - chr1_4:30583190-30583209 None:intergenic 30.0%
CTCAAAAACAGTTAGTTCAA+AGG - chr1_4:30583408-30583427 None:intergenic 30.0%
ATTCAACAAAGTCTTGATGA+CGG - chr1_4:30583446-30583465 None:intergenic 30.0%
ACTGAAGAAGAAATATTGCA+AGG - chr1_4:30583480-30583499 None:intergenic 30.0%
CAATTCTTGAAGCATGTAAT+TGG - chr1_4:30583625-30583644 None:intergenic 30.0%
CAATTACATGCTTCAAGAAT+TGG + chr1_4:30583623-30583642 Msa0159720:intron 30.0%
TCTTTAATCACGCAATTTGA+AGG - chr1_4:30583704-30583723 None:intergenic 30.0%
!!! CTTTCAGTTAGTTTGTTTTG+AGG - chr1_4:30578680-30578699 None:intergenic 30.0%
TATAATGTCTTGTGGAGTTA+AGG + chr1_4:30578835-30578854 Msa0159720:CDS 30.0%
TCAAAGTCTTCAATCATCTA+AGG - chr1_4:30584334-30584353 None:intergenic 30.0%
! ACCTTTTCAATACAAAACAG+GGG - chr1_4:30579109-30579128 None:intergenic 30.0%
CTAAATGGCATAGATATGTT+TGG + chr1_4:30584591-30584610 Msa0159720:CDS 30.0%
! TAACTTGTAGTTCCTTTAGT+GGG - chr1_4:30584780-30584799 None:intergenic 30.0%
! ATAACTTGTAGTTCCTTTAG+TGG - chr1_4:30584781-30584800 None:intergenic 30.0%
TTTCAAGATGTCCAAGATCT+GGG - chr1_4:30578808-30578827 None:intergenic 35.0%
ATTTCAAGATGTCCAAGATC+TGG - chr1_4:30578809-30578828 None:intergenic 35.0%
AGTTAAGGAAATTGTTGCAG+TGG + chr1_4:30578850-30578869 Msa0159720:CDS 35.0%
CTTCAATGAAGGGTAATCTA+AGG - chr1_4:30578978-30578997 None:intergenic 35.0%
! ACCCCTGTTTTGTATTGAAA+AGG + chr1_4:30579105-30579124 Msa0159720:CDS 35.0%
GTTATGTTGGGGATATTGAA+TGG + chr1_4:30579251-30579270 Msa0159720:CDS 35.0%
! TAACTTGTGGTTCCTTTAGT+GGG - chr1_4:30579428-30579447 None:intergenic 35.0%
! ATAACTTGTGGTTCCTTTAG+TGG - chr1_4:30579429-30579448 None:intergenic 35.0%
TCTTCAAGATATTGGAACAG+AGG - chr1_4:30579548-30579567 None:intergenic 35.0%
CACGTAACTCTTCAAGATAT+TGG - chr1_4:30579556-30579575 None:intergenic 35.0%
GATTGATGAAGAAAAAGCAG+AGG + chr1_4:30579760-30579779 Msa0159720:CDS 35.0%
TTGCTAGACTTGATCGTTAA+AGG + chr1_4:30579881-30579900 Msa0159720:CDS 35.0%
! CTCCGACATCAATTTTTGTT+AGG - chr1_4:30579955-30579974 None:intergenic 35.0%
TCGGAGAAGAAAATGTGATA+TGG + chr1_4:30579969-30579988 Msa0159720:CDS 35.0%
GCAAACGTTACCAAATAGTT+AGG + chr1_4:30580560-30580579 Msa0159720:intron 35.0%
!! CGGAAAGTATCATTTGATTG+TGG + chr1_4:30580747-30580766 Msa0159720:intron 35.0%
AACCGGTGATTAAAAAGAGA+AGG - chr1_4:30580829-30580848 None:intergenic 35.0%
CGAACTAAGTTAAACTCAAG+GGG - chr1_4:30580940-30580959 None:intergenic 35.0%
GTATAATATATGTAGGGGTC+GGG + chr1_4:30580970-30580989 Msa0159720:intron 35.0%
TATAATATATGTAGGGGTCG+GGG + chr1_4:30580971-30580990 Msa0159720:intron 35.0%
ATTACTCTCATATTAGTGCC+AGG + chr1_4:30581191-30581210 Msa0159720:intron 35.0%
CAACACATCATTGATCTCTT+AGG + chr1_4:30581256-30581275 Msa0159720:intron 35.0%
! TCTTTCACTCTATCTGGAAT+GGG - chr1_4:30581351-30581370 None:intergenic 35.0%
TTCTTTCACTCTATCTGGAA+TGG - chr1_4:30581352-30581371 None:intergenic 35.0%
! AGCTTTTCTTTCACTCTATC+TGG - chr1_4:30581357-30581376 None:intergenic 35.0%
ACTCAATGTCTATCTACTCA+TGG + chr1_4:30581457-30581476 Msa0159720:intron 35.0%
!!! AAGAAATTTTCTTTGGAGCG+GGG + chr1_4:30581515-30581534 Msa0159720:intron 35.0%
TAAAAAGAAGCTTGTGACTG+TGG + chr1_4:30581545-30581564 Msa0159720:intron 35.0%
!!! CTTTTGAAGAAGGTGGATTA+GGG + chr1_4:30581589-30581608 Msa0159720:intron 35.0%
ACCACATATTCTCATCTCTT+TGG + chr1_4:30581739-30581758 Msa0159720:intron 35.0%
TCCAAAGAGATGAGAATATG+TGG - chr1_4:30581743-30581762 None:intergenic 35.0%
!! TAACTGTGATGGATAATTCC+CGG + chr1_4:30581784-30581803 Msa0159720:intron 35.0%
ATAATTCCCGGTGGTTAATT+GGG + chr1_4:30581796-30581815 Msa0159720:intron 35.0%
!! TTTTGGGAAGATAACTGGTA+TGG + chr1_4:30581837-30581856 Msa0159720:intron 35.0%
! GGATAGTTTGAAGTATCCTT+AGG - chr1_4:30581894-30581913 None:intergenic 35.0%
TCAAACTATCCAGCTTATGT+TGG + chr1_4:30581903-30581922 Msa0159720:intron 35.0%
ATAAAGTCTCCAACATAAGC+TGG - chr1_4:30581915-30581934 None:intergenic 35.0%
! GCATATTCCTGCAGATATTT+TGG + chr1_4:30581950-30581969 Msa0159720:intron 35.0%
! ATTTGGAAGCACAATACACT+TGG + chr1_4:30582044-30582063 Msa0159720:intron 35.0%
! ACTTGGTGAGATAAGCTTAA+AGG + chr1_4:30582061-30582080 Msa0159720:intron 35.0%
TTGAAAACAAAGGGAACACA+TGG - chr1_4:30582249-30582268 None:intergenic 35.0%
!! TCGCTTTTAAACTATGGTGT+TGG + chr1_4:30582309-30582328 Msa0159720:intron 35.0%
!!! TTTTAAACTATGGTGTTGGC+TGG + chr1_4:30582313-30582332 Msa0159720:intron 35.0%
!! GGCTTCTATTTTGGATTTTC+CGG + chr1_4:30582334-30582353 Msa0159720:intron 35.0%
TTCAATCAATCCCAGACATT+TGG + chr1_4:30582363-30582382 Msa0159720:intron 35.0%
TTAACTGCTAACCTCCAATT+TGG - chr1_4:30582506-30582525 None:intergenic 35.0%
TACAGATAAGGTAGATGCTT+TGG - chr1_4:30582570-30582589 None:intergenic 35.0%
!! TTAATAATAGGAGCTTTGGG+AGG - chr1_4:30582635-30582654 None:intergenic 35.0%
TTTAATACATCTGCATGTGG+GGG + chr1_4:30582719-30582738 Msa0159720:intron 35.0%
ATAGAGATAGCTCATCATAG+AGG + chr1_4:30582842-30582861 Msa0159720:intron 35.0%
AGGAATCAGTTTCAATCCAT+AGG - chr1_4:30582877-30582896 None:intergenic 35.0%
TTCAATGGGTCTTAATATCC+AGG + chr1_4:30583045-30583064 Msa0159720:intron 35.0%
TCAATGGGTCTTAATATCCA+GGG + chr1_4:30583046-30583065 Msa0159720:intron 35.0%
! ATATCCAGGGTATCACTATT+TGG + chr1_4:30583059-30583078 Msa0159720:intron 35.0%
!! AAAAGCTTTGAATGCAAGCA+GGG - chr1_4:30583093-30583112 None:intergenic 35.0%
!! TAAAAGCTTTGAATGCAAGC+AGG - chr1_4:30583094-30583113 None:intergenic 35.0%
! GCTTGCATTCAAAGCTTTTA+TGG + chr1_4:30583094-30583113 Msa0159720:intron 35.0%
TAGAGAGAAAACACAAAGGA+GGG - chr1_4:30583186-30583205 None:intergenic 35.0%
ATAGAGAGAAAACACAAAGG+AGG - chr1_4:30583187-30583206 None:intergenic 35.0%
AAGATAGTATCATTCCGACA+GGG - chr1_4:30583338-30583357 None:intergenic 35.0%
AAAGATAGTATCATTCCGAC+AGG - chr1_4:30583339-30583358 None:intergenic 35.0%
CATCAAGACTTTGTTGAATC+AGG + chr1_4:30583447-30583466 Msa0159720:intron 35.0%
CGAATGTCACTGATATACAA+AGG - chr1_4:30583517-30583536 None:intergenic 35.0%
TTGCTTGAAATTGTGCAGAA+TGG - chr1_4:30583557-30583576 None:intergenic 35.0%
AAGCATGTAATTGGGAAAGA+TGG - chr1_4:30583616-30583635 None:intergenic 35.0%
TTTGAAGGAAGAAACACTGA+AGG - chr1_4:30583689-30583708 None:intergenic 35.0%
!!! TTTGGGTTTCTAGGGTTTTT+TGG + chr1_4:30583817-30583836 Msa0159720:intron 35.0%
!! GTTACTAGTTTGTTAGTGTG+TGG - chr1_4:30584010-30584029 None:intergenic 35.0%
AGATCTGGGCATAATGAATA+TGG - chr1_4:30584150-30584169 None:intergenic 35.0%
TATTCATTATGCCCAGATCT+TGG + chr1_4:30584150-30584169 Msa0159720:intron 35.0%
TTTCAAGATGTCCAAGATCT+GGG - chr1_4:30578808-30578827 None:intergenic 35.0%
ATTTCAAGATGTCCAAGATC+TGG - chr1_4:30578809-30578828 None:intergenic 35.0%
AGTTAAGGAAATTGTTGCAG+TGG + chr1_4:30578850-30578869 Msa0159720:CDS 35.0%
! TGATTTTCATCAACCGAGTA+AGG - chr1_4:30584416-30584435 None:intergenic 35.0%
!! TTACTCGGTTGATGAAAATC+AGG + chr1_4:30584415-30584434 Msa0159720:CDS 35.0%
! ACCCCTGTTTTGTATTGAAA+AGG + chr1_4:30579105-30579124 Msa0159720:CDS 35.0%
! GATATGTTTGGGATAGTGAA+TGG + chr1_4:30584603-30584622 Msa0159720:CDS 35.0%
! CGAGCTTTTCCAATTCAAAA+AGG - chr1_4:30584842-30584861 None:intergenic 35.0%
CTGACAAGAGGATTATTCAA+TGG - chr1_4:30584888-30584907 None:intergenic 35.0%
AGATCTGGGCATAGTGAATA+TGG - chr1_4:30578794-30578813 None:intergenic 40.0%
TATTCACTATGCCCAGATCT+TGG + chr1_4:30578794-30578813 Msa0159720:CDS 40.0%
ATTGTTGCAGTGGAAGAAGT+TGG + chr1_4:30578860-30578879 Msa0159720:CDS 40.0%
AGTGGAAGAAGTTGGATCAA+TGG + chr1_4:30578868-30578887 Msa0159720:CDS 40.0%
CAATACAAAACAGGGGTTGT+TGG - chr1_4:30579102-30579121 None:intergenic 40.0%
GAAACATTGTTCCCCACTAA+AGG + chr1_4:30579413-30579432 Msa0159720:CDS 40.0%
AACTTGTGGTTCCTTTAGTG+GGG - chr1_4:30579427-30579446 None:intergenic 40.0%
TGGAAAAGTTCAAGCACATC+TGG + chr1_4:30579498-30579517 Msa0159720:CDS 40.0%
TGGAACAGAGGATTATCCAA+TGG - chr1_4:30579536-30579555 None:intergenic 40.0%
!! TTGTCCAAGTTTGCTAAGCT+TGG + chr1_4:30579583-30579602 Msa0159720:CDS 40.0%
CTTGTGAAAGATGTCGACAA+TGG - chr1_4:30579611-30579630 None:intergenic 40.0%
AGTTTGAGAAGCTTCTGCTA+TGG + chr1_4:30579833-30579852 Msa0159720:CDS 40.0%
GTTTGAGAAGCTTCTGCTAT+GGG + chr1_4:30579834-30579853 Msa0159720:CDS 40.0%
GATGAGAAGATCTTCATCTG+AGG - chr1_4:30579911-30579930 None:intergenic 40.0%
CATCTATCCTCACATTTGCA+AGG + chr1_4:30580677-30580696 Msa0159720:intron 40.0%
! TGCGAAGATAGTTGATTTCC+TGG - chr1_4:30581212-30581231 None:intergenic 40.0%
AGGAAATCAACTATCTTCGC+AGG + chr1_4:30581211-30581230 Msa0159720:intron 40.0%
AAATCAACTATCTTCGCAGG+TGG + chr1_4:30581214-30581233 Msa0159720:intron 40.0%
!! TGATCTCTTAGGCTTTGAAG+TGG + chr1_4:30581267-30581286 Msa0159720:intron 40.0%
!! GATCTCTTAGGCTTTGAAGT+GGG + chr1_4:30581268-30581287 Msa0159720:intron 40.0%
GGCTGCAAATACGAAACTTT+AGG - chr1_4:30581330-30581349 None:intergenic 40.0%
TCTTCCAGCAATAGAGAGAA+GGG - chr1_4:30581397-30581416 None:intergenic 40.0%
AATGTCTATCTACTCATGGC+CGG + chr1_4:30581461-30581480 Msa0159720:intron 40.0%
CACCTTCTTCAAAAGGTTTG+CGG - chr1_4:30581584-30581603 None:intergenic 40.0%
CCTAATCCACCTTCTTCAAA+AGG - chr1_4:30581591-30581610 None:intergenic 40.0%
!! CCTTTTGAAGAAGGTGGATT+AGG + chr1_4:30581588-30581607 Msa0159720:intron 40.0%
!! AAGAAGGTGGATTAGGGATT+AGG + chr1_4:30581595-30581614 Msa0159720:intron 40.0%
! TTGGGACTTTTTACACTCCA+AGG + chr1_4:30581659-30581678 Msa0159720:intron 40.0%
! TTTTACACTCCAAGGAAGAC+TGG + chr1_4:30581667-30581686 Msa0159720:intron 40.0%
TTTACACTCCAAGGAAGACT+GGG + chr1_4:30581668-30581687 Msa0159720:intron 40.0%
GATAATTCCCGGTGGTTAAT+TGG + chr1_4:30581795-30581814 Msa0159720:intron 40.0%
TACCATTCCCAATTAACCAC+CGG - chr1_4:30581806-30581825 None:intergenic 40.0%
!! TCCACTTTTGGGAAGATAAC+TGG + chr1_4:30581832-30581851 Msa0159720:intron 40.0%
ACCAGTTATCTTCCCAAAAG+TGG - chr1_4:30581836-30581855 None:intergenic 40.0%
GAGTTAAGTTCAAAGCCTCA+AGG - chr1_4:30581872-30581891 None:intergenic 40.0%
!! GGCTTTGAACTTAACTCCTA+AGG + chr1_4:30581875-30581894 Msa0159720:intron 40.0%
TAAAAGACATCATGCGGTCA+AGG + chr1_4:30582097-30582116 Msa0159720:intron 40.0%
AACAAAGGGAACACATGGAA+GGG - chr1_4:30582244-30582263 None:intergenic 40.0%
AAACAAAGGGAACACATGGA+AGG - chr1_4:30582245-30582264 None:intergenic 40.0%
GGGATTGATTGAAAATGCAC+CGG - chr1_4:30582356-30582375 None:intergenic 40.0%
TCAGCACTATTTGGTATAGC+AGG + chr1_4:30582453-30582472 Msa0159720:intron 40.0%
GGTCTCCTCCTATTAATGAT+TGG + chr1_4:30582666-30582685 Msa0159720:intron 40.0%
AAACTCAAACTCGGTCTTCT+TGG + chr1_4:30582751-30582770 Msa0159720:intron 40.0%
!!! GCTTGTTTTGCAGAGAACTT+GGG + chr1_4:30582773-30582792 Msa0159720:intron 40.0%
ATAGAGGCTGGAATAACCTA+TGG + chr1_4:30582858-30582877 Msa0159720:intron 40.0%
! TGAAACTGATTCCTCCTTAG+TGG + chr1_4:30582883-30582902 Msa0159720:intron 40.0%
!! CAACTGTTTCTAAGGTCACA+AGG - chr1_4:30582938-30582957 None:intergenic 40.0%
CTTGTGACCTTAGAAACAGT+TGG + chr1_4:30582936-30582955 Msa0159720:intron 40.0%
! TCATGTGTTGGAGTGTTAAG+AGG - chr1_4:30582970-30582989 None:intergenic 40.0%
! GACTTGGGTTACCCAATTTT+AGG + chr1_4:30583125-30583144 Msa0159720:intron 40.0%
AGAGAGAAAACACAAAGGAG+GGG - chr1_4:30583185-30583204 None:intergenic 40.0%
! CTTTTGCTGCACCTCTTTTT+TGG + chr1_4:30583230-30583249 Msa0159720:intron 40.0%
TGAATTGAACAACTCCCTGT+CGG + chr1_4:30583321-30583340 Msa0159720:intron 40.0%
GAAATTGTGCAGAATGGTGT+AGG - chr1_4:30583551-30583570 None:intergenic 40.0%
GCAGTGATGAAGAATCTGTT+TGG - chr1_4:30583590-30583609 None:intergenic 40.0%
ACTGAAGGAAACACCATGAA+TGG - chr1_4:30583674-30583693 None:intergenic 40.0%
CTATTGCTGCGCTAACAAAT+TGG - chr1_4:30583767-30583786 None:intergenic 40.0%
AGACTTGCAACAACCTTACT+CGG + chr1_4:30579051-30579070 Msa0159720:CDS 40.0%
CAATACAAAACAGGGGTTGT+TGG - chr1_4:30579102-30579121 None:intergenic 40.0%
GAAACATTGTTGCCCACTAA+AGG + chr1_4:30584765-30584784 Msa0159720:CDS 40.0%
CATTTAGTGCCAATTCCACC+AGG - chr1_4:30579226-30579245 None:intergenic 45.0%
CTGGTGGAATTGGCACTAAA+TGG + chr1_4:30579224-30579243 Msa0159720:CDS 45.0%
! CTGGCACGAAGATTTTCCAT+TGG + chr1_4:30579517-30579536 Msa0159720:CDS 45.0%
GGTACCAAGCTTAGCAAACT+TGG - chr1_4:30579590-30579609 None:intergenic 45.0%
CCAGTCATCCACTTCCAAAT+AGG - chr1_4:30579639-30579658 None:intergenic 45.0%
CCTATTTGGAAGTGGATGAC+TGG + chr1_4:30579636-30579655 Msa0159720:CDS 45.0%
CGATCAAGTCTAGCAACGAT+GGG - chr1_4:30579877-30579896 None:intergenic 45.0%
ACGATCAAGTCTAGCAACGA+TGG - chr1_4:30579878-30579897 None:intergenic 45.0%
TTGGGTACCTTGCAAATGTG+AGG - chr1_4:30580687-30580706 None:intergenic 45.0%
TTCGCAGGTGGTATTTCTCA+AGG + chr1_4:30581226-30581245 Msa0159720:intron 45.0%
TTGAAGTGGGAACGTTTACC+TGG + chr1_4:30581281-30581300 Msa0159720:intron 45.0%
TGAAGTGGGAACGTTTACCT+GGG + chr1_4:30581282-30581301 Msa0159720:intron 45.0%
TGAAAGAAAAGCTCGCAGCA+TGG + chr1_4:30581364-30581383 Msa0159720:intron 45.0%
CTCTTCCAGCAATAGAGAGA+AGG - chr1_4:30581398-30581417 None:intergenic 45.0%
TGTGACTGTGGCATGGAAAA+AGG + chr1_4:30581557-30581576 Msa0159720:intron 45.0%
!! GTCCGCAAACCTTTTGAAGA+AGG + chr1_4:30581579-30581598 Msa0159720:intron 45.0%
!! CGCAAACCTTTTGAAGAAGG+TGG + chr1_4:30581582-30581601 Msa0159720:intron 45.0%
ACCATTCCCAATTAACCACC+GGG - chr1_4:30581805-30581824 None:intergenic 45.0%
AAGTTCAAAGCCTCAAGGAG+AGG - chr1_4:30581867-30581886 None:intergenic 45.0%
GAAAGTTGTTATCCCTGCTG+AGG + chr1_4:30582004-30582023 Msa0159720:intron 45.0%
CAAGCTAAGAGGGATTTGGA+TGG - chr1_4:30582161-30582180 None:intergenic 45.0%
CATCCAAATCCCTCTTAGCT+TGG + chr1_4:30582159-30582178 Msa0159720:intron 45.0%
TCTGCAAGTTTCTCGTCTGT+GGG - chr1_4:30582206-30582225 None:intergenic 45.0%
!!! GTGTTGGCTGGCTTCTATTT+TGG + chr1_4:30582325-30582344 Msa0159720:intron 45.0%
CACAGAGAGTCCAAATGTCT+GGG - chr1_4:30582376-30582395 None:intergenic 45.0%
TCACAGAGAGTCCAAATGTC+TGG - chr1_4:30582377-30582396 None:intergenic 45.0%
ATTTGGACTCTCTGTGAGAG+AGG + chr1_4:30582380-30582399 Msa0159720:intron 45.0%
TGGATCAAGTGCAACACTGA+CGG + chr1_4:30582686-30582705 Msa0159720:intron 45.0%
!!! GGCTTGTTTTGCAGAGAACT+TGG + chr1_4:30582772-30582791 Msa0159720:intron 45.0%
! TGTTTTGCAGAGAACTTGGG+AGG + chr1_4:30582776-30582795 Msa0159720:intron 45.0%
! GTTTTGCAGAGAACTTGGGA+GGG + chr1_4:30582777-30582796 Msa0159720:intron 45.0%
! TTTTGCAGAGAACTTGGGAG+GGG + chr1_4:30582778-30582797 Msa0159720:intron 45.0%
AGATAGCTCATCATAGAGGC+TGG + chr1_4:30582846-30582865 Msa0159720:intron 45.0%
TTTAGCTGCAAGCACCACTA+AGG - chr1_4:30582900-30582919 None:intergenic 45.0%
TGCTGATAAGCTCGCTTCAA+TGG + chr1_4:30583030-30583049 Msa0159720:intron 45.0%
GCTGATAAGCTCGCTTCAAT+GGG + chr1_4:30583031-30583050 Msa0159720:intron 45.0%
CCATCCAAATAGTGATACCC+TGG - chr1_4:30583066-30583085 None:intergenic 45.0%
! CCAGGGTATCACTATTTGGA+TGG + chr1_4:30583063-30583082 Msa0159720:intron 45.0%
GGGTATCACTATTTGGATGG+AGG + chr1_4:30583066-30583085 Msa0159720:intron 45.0%
GAGAGAAAACACAAAGGAGG+GGG - chr1_4:30583184-30583203 None:intergenic 45.0%
TTCGATAAACCGTGCACTTG+CGG + chr1_4:30583366-30583385 Msa0159720:intron 45.0%
GAGATAAATCCGCAAGTGCA+CGG - chr1_4:30583378-30583397 None:intergenic 45.0%
GAAACTGCTGCTACCATTCA+TGG + chr1_4:30583658-30583677 Msa0159720:intron 45.0%
AGCCTGTGGTTTCGTTCTAA+GGG - chr1_4:30583737-30583756 None:intergenic 45.0%
AAATTGGCATCAAGAGCCTG+TGG - chr1_4:30583751-30583770 None:intergenic 45.0%
ATTGTTGCAGTGGAAGAAGC+TGG + chr1_4:30584216-30584235 Msa0159720:intron 45.0%
AGTGGAAGAAGCTGGATCAA+TGG + chr1_4:30584224-30584243 Msa0159720:intron 45.0%
CATTTAGTGCCAATTCCACC+AGG - chr1_4:30579226-30579245 None:intergenic 45.0%
CTGGTGGAATTGGCACTAAA+TGG + chr1_4:30579224-30579243 Msa0159720:CDS 45.0%
!!! AATTTACAATTTTTTATTTA+CGG + chr1_4:30580483-30580502 Msa0159720:intron 5.0%
! TTTTCAGTTGAGCCCCAACC+TGG + chr1_4:30579205-30579224 Msa0159720:intron 50.0%
AGTGCCAATTCCACCAGGTT+GGG - chr1_4:30579221-30579240 None:intergenic 50.0%
TAGTGCCAATTCCACCAGGT+TGG - chr1_4:30579222-30579241 None:intergenic 50.0%
GAAGTGGGAACGTTTACCTG+GGG + chr1_4:30581283-30581302 Msa0159720:intron 50.0%
AAGTGGGAACGTTTACCTGG+GGG + chr1_4:30581284-30581303 Msa0159720:intron 50.0%
! CTTTGAAAATAGGGACCCCC+AGG - chr1_4:30581302-30581321 None:intergenic 50.0%
! CTGGGGGTCCCTATTTTCAA+AGG + chr1_4:30581300-30581319 Msa0159720:intron 50.0%
GCATCCCTTCTCTCTATTGC+TGG + chr1_4:30581390-30581409 Msa0159720:intron 50.0%
AGAAGCTTGTGACTGTGGCA+TGG + chr1_4:30581550-30581569 Msa0159720:intron 50.0%
AATTCTGGCCCAGTCTTCCT+TGG - chr1_4:30581679-30581698 None:intergenic 50.0%
!! CTGTGATGGATAATTCCCGG+TGG + chr1_4:30581787-30581806 Msa0159720:intron 50.0%
TCCCGGTGGTTAATTGGGAA+TGG + chr1_4:30581801-30581820 Msa0159720:intron 50.0%
TGTCTTCACACTCCTCAGCA+GGG - chr1_4:30582019-30582038 None:intergenic 50.0%
TTGTCTTCACACTCCTCAGC+AGG - chr1_4:30582020-30582039 None:intergenic 50.0%
ATCATGCGGTCAAGGTGCAA+TGG + chr1_4:30582105-30582124 Msa0159720:intron 50.0%
TCATGCGGTCAAGGTGCAAT+GGG + chr1_4:30582106-30582125 Msa0159720:intron 50.0%
!! TGCAATGGGCTGAGCAAGTT+TGG + chr1_4:30582120-30582139 Msa0159720:intron 50.0%
GCTAAGAGGGATTTGGATGG+TGG - chr1_4:30582158-30582177 None:intergenic 50.0%
CCTCCAAGCTAAGAGGGATT+TGG - chr1_4:30582165-30582184 None:intergenic 50.0%
! CCAAATCCCTCTTAGCTTGG+AGG + chr1_4:30582162-30582181 Msa0159720:intron 50.0%
CTGTGGGGATCTTATCATGG+AGG - chr1_4:30582190-30582209 None:intergenic 50.0%
CGTCTGTGGGGATCTTATCA+TGG - chr1_4:30582193-30582212 None:intergenic 50.0%
CTGCAAGTTTCTCGTCTGTG+GGG - chr1_4:30582205-30582224 None:intergenic 50.0%
CTCTGCAAGTTTCTCGTCTG+TGG - chr1_4:30582207-30582226 None:intergenic 50.0%
GACGAGAAACTTGCAGAGAG+AGG + chr1_4:30582209-30582228 Msa0159720:intron 50.0%
GGTATAGCAGGAACCAATGC+AGG + chr1_4:30582465-30582484 Msa0159720:intron 50.0%
TTTGCAGAGAACTTGGGAGG+GGG + chr1_4:30582779-30582798 Msa0159720:intron 50.0%
TGAGCTCTCTGCTGCTATGA+GGG + chr1_4:30582817-30582836 Msa0159720:intron 50.0%
ACCCCTTAGAACGAAACCAC+AGG + chr1_4:30583732-30583751 Msa0159720:intron 50.0%
! GCCTGTGGTTTCGTTCTAAG+GGG - chr1_4:30583736-30583755 None:intergenic 50.0%
GAGCCTGTGGTTTCGTTCTA+AGG - chr1_4:30583738-30583757 None:intergenic 50.0%
! TTTTCAGTTGAGCCCCAACC+TGG + chr1_4:30579205-30579224 Msa0159720:intron 50.0%
AGTGCCAATTCCACCAGGTT+GGG - chr1_4:30579221-30579240 None:intergenic 50.0%
TAGTGCCAATTCCACCAGGT+TGG - chr1_4:30579222-30579241 None:intergenic 50.0%
TGGAAAAGCTCGAGCACATC+TGG + chr1_4:30584850-30584869 Msa0159720:CDS 50.0%
GTGCCAATTCCACCAGGTTG+GGG - chr1_4:30579220-30579239 None:intergenic 55.0%
GTATGGTGAGCCTCTCCTTG+AGG + chr1_4:30581854-30581873 Msa0159720:intron 55.0%
GAGGAGCCTCCAAGCTAAGA+GGG - chr1_4:30582171-30582190 None:intergenic 55.0%
GGACTCTCTGTGAGAGAGGT+TGG + chr1_4:30582384-30582403 Msa0159720:intron 55.0%
CTGAGCTCTCTGCTGCTATG+AGG + chr1_4:30582816-30582835 Msa0159720:intron 55.0%
AGCTGCAAGCACCACTAAGG+AGG - chr1_4:30582897-30582916 None:intergenic 55.0%
GTGCCAATTCCACCAGGTTG+GGG - chr1_4:30579220-30579239 None:intergenic 55.0%
AAAGCTCGAGCACATCTGGC+AGG + chr1_4:30584854-30584873 Msa0159720:CDS 55.0%
TCAGTTGAGCCCCAACCTGG+TGG + chr1_4:30579208-30579227 Msa0159720:intron 60.0%
GAGCCCCAACCTGGTGGAAT+TGG + chr1_4:30579214-30579233 Msa0159720:CDS 60.0%
GGAGGAGCCTCCAAGCTAAG+AGG - chr1_4:30582172-30582191 None:intergenic 60.0%
TCAGTTGAGCCCCAACCTGG+TGG + chr1_4:30579208-30579227 Msa0159720:intron 60.0%
GAGCCCCAACCTGGTGGAAT+TGG + chr1_4:30579214-30579233 Msa0159720:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 30578540 30584914 30578540 ID=Msa0159720;Name=Msa0159720
chr1_4 mRNA 30578540 30584914 30578540 ID=Msa0159720-mRNA-1;Parent=Msa0159720;Name=Msa0159720-mRNA-1;_AED=0.17;_eAED=0.17;_QI=179|0.66|0.25|1|1|1|4|0|538
chr1_4 exon 30578540 30579126 30578540 ID=Msa0159720-mRNA-1:exon:9804;Parent=Msa0159720-mRNA-1
chr1_4 exon 30579212 30579995 30579212 ID=Msa0159720-mRNA-1:exon:9805;Parent=Msa0159720-mRNA-1
chr1_4 exon 30584402 30584475 30584402 ID=Msa0159720-mRNA-1:exon:9806;Parent=Msa0159720-mRNA-1
chr1_4 exon 30584564 30584914 30584564 ID=Msa0159720-mRNA-1:exon:9807;Parent=Msa0159720-mRNA-1
chr1_4 five_prime_UTR 30578540 30578718 30578540 ID=Msa0159720-mRNA-1:five_prime_utr;Parent=Msa0159720-mRNA-1
chr1_4 CDS 30578719 30579126 30578719 ID=Msa0159720-mRNA-1:cds;Parent=Msa0159720-mRNA-1
chr1_4 CDS 30579212 30579995 30579212 ID=Msa0159720-mRNA-1:cds;Parent=Msa0159720-mRNA-1
chr1_4 CDS 30584402 30584475 30584402 ID=Msa0159720-mRNA-1:cds;Parent=Msa0159720-mRNA-1
chr1_4 CDS 30584564 30584914 30584564 ID=Msa0159720-mRNA-1:cds;Parent=Msa0159720-mRNA-1
Gene Sequence

>Msa0159720

ATGATTATCACTAATCTAAACTTGAATTATCAACTAACAGTTTCTTTGTGCCAAAGCTTGTTAAATATCTTTCCATATTCACTATGCCCAGATCTTGGACATCTTGAAATACTTGATATAATGTCTTGTGGAGTTAAGGAAATTGTTGCAGTGGAAGAAGTTGGATCAATGGAAATTAATTTTAATTTTCCCCAATTGAAAGTTATGAAATTGCGTTATTTGAGAAATCTTAAGAGTTTCTATCAAGGAAAGCATACCTTAGATTACCCTTCATTGAAGACTTTGAATGTATATCGTTGTGAAGCATTAAGAATGTTTTATTTCAACAATTCAGACTTGCAACAACCTTACTCGTTTGATGAAAATCAGGACATGCTATTCCAACAACCCCTGTTTTGTATTGAAAAGTTGAGCCCCAACCTGGTGGAATTGGCACTAAATGGCATAGTTATGTTGGGGATATTGAATGGTTGTTATCAAGAAAATATCTTTCATAAAGTTGAATTTCTTCGTTTACAATGCTTTGATGAAACTCCAACTACTCTTCTGAATGATTTCCATACAATATTTCCTAATGTTGAAACATTTCAAGTGCATAATAGTTCTTTTGAAACATTGTTCCCCACTAAAGGAACCACAAGTTATCTTAGTTTGCAAATGTCAAATCAAATAAGAAAGTTGTGGCTTTTTGAATTGGAAAAGTTCAAGCACATCTGGCACGAAGATTTTCCATTGGATAATCCTCTGTTCCAATATCTTGAAGAGTTACGTGTATTGAATTGTCCAAGTTTGCTAAGCTTGGTACCATTGTCGACATCTTTCACAAGTTTAACCTATTTGGAAGTGGATGACTGGAAAGAGCTGATCTATTTGATAACATCTTCAACAGTGAAAAGCCTAGTTCAAATCAAAACATTAATAATAATGAATTGTGAGAAGATGTTGGATGTTGTGAAGATTGATGAAGAAAAAGCAGAGGAAAACATTGTATTTGAAAACCTGGAATACTTGGAATTTACTTCGTTGTCAAGTTTGAGAAGCTTCTGCTATGGGAAACAAGCAATCATATTCCCATCGTTGCTAGACTTGATCGTTAAAGGATGTCCTCAGATGAAGATCTTCTCATCTGCACTAACAGTAGCACCATGCCTAACAAAAATTGATGTCGGAGAAGAAAATGTGATATGGAAAGACTTGCAACAACCTTACTCGGTTGATGAAAATCAGGACATGCTATTCCAACAACCCCTGTTTTGTATTGAAAAGTTGAGCCCCAACCTGGTGGAATTGGCACTAAATGGCATAGATATGTTTGGGATAGTGAATGGTTGTTATCAAGAAAATATCTTTCATAAAGTTGAATTTCTTCGTTTACAATGCTTTGATGAAACTCCAACTACTCTTCTAAATGATTTCCATACAATATTTCCTAATGTTGAAACATTTCAAGTGCCTAATAGTTCTTTTGAAACATTGTTGCCCACTAAAGGAACTACAAGTTATCTTAGTTTGCAAATGTCAAATCAAATAAGAAAGTTATGCCTTTTTGAATTGGAAAAGCTCGAGCACATCTGGCAGGAAGATTTTCCATTGAATAATCCTCTTGTCAGAATATAA
Protein sequence

>Msa0159720

MIITNLNLNYQLTVSLCQSLLNIFPYSLCPDLGHLEILDIMSCGVKEIVAVEEVGSMEINFNFPQLKVMKLRYLRNLKSFYQGKHTLDYPSLKTLNVYRCEALRMFYFNNSDLQQPYSFDENQDMLFQQPLFCIEKLSPNLVELALNGIVMLGILNGCYQENIFHKVEFLRLQCFDETPTTLLNDFHTIFPNVETFQVHNSSFETLFPTKGTTSYLSLQMSNQIRKLWLFELEKFKHIWHEDFPLDNPLFQYLEELRVLNCPSLLSLVPLSTSFTSLTYLEVDDWKELIYLITSSTVKSLVQIKTLIIMNCEKMLDVVKIDEEKAEENIVFENLEYLEFTSLSSLRSFCYGKQAIIFPSLLDLIVKGCPQMKIFSSALTVAPCLTKIDVGEENVIWKDLQQPYSVDENQDMLFQQPLFCIEKLSPNLVELALNGIDMFGIVNGCYQENIFHKVEFLRLQCFDETPTTLLNDFHTIFPNVETFQVPNSSFETLLPTKGTTSYLSLQMSNQIRKLCLFELEKLEHIWQEDFPLNNPLVRI*