AlfalfaGEDB | Msa0192970

M. sativa cultivar zhongmu-4 / Msa0192970

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192970	XP_003593755.1	67.619	315	90	4	1	306	1	312	1.36e-133	392

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192970	sp\|Q9XIA2\|FB49_ARATH	31.878	229	125	11	9	214	100	320	1.19e-13	74.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192970	G7ILH6	67.619	315	90	4	1	306	1	312	6.51e-134	392

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0111510	Msa0192970	0.817267	3.603841e-52	-8.615850e-47
Msa0145750	Msa0192970	0.807461	4.997667e-50	-8.615850e-47
Msa0153910	Msa0192970	0.809211	2.116339e-50	-8.615850e-47
Msa0159720	Msa0192970	0.836035	1.184573e-56	-8.615850e-47
Msa0165190	Msa0192970	0.831641	1.487695e-55	-8.615850e-47
Msa0192970	Msa0235140	0.845688	3.474159e-59	-8.615850e-47
Msa0192970	Msa0267010	0.802837	4.642007e-49	-8.615850e-47
Msa0192970	Msa0270520	0.805267	1.449713e-49	-8.615850e-47
Msa0192970	Msa0306460	0.806542	7.822304e-50	-8.615850e-47
Msa0192970	Msa0313760	0.858085	1.049513e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192970	MtrunA17_Chr2g0283611	67.619	315	90	4	1	306	1	312	1.25e-137	392
Msa0192970	MtrunA17_Chr1g0178491	35.256	156	90	4	17	164	36	188	5.22e-22	94.7
Msa0192970	MtrunA17_Chr2g0283601	89.130	46	5	0	1	46	1	46	9.85e-22	87.4
Msa0192970	MtrunA17_Chr2g0283601	75.556	45	11	0	262	306	42	86	1.57e-17	76.3
Msa0192970	MtrunA17_Chr7g0266441	29.448	163	98	4	17	165	32	191	3.69e-14	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0192970	AT4G10660.1	31.515	165	96	6	74	229	38	194	1.51e-16	79.0
Msa0192970	AT1G49360.1	31.878	229	125	11	9	214	100	320	1.21e-14	74.7
Msa0192970	AT1G49360.5	31.878	229	125	11	9	214	77	297	1.22e-14	74.3
Msa0192970	AT1G49360.3	32.110	218	117	11	20	214	8	217	2.20e-14	73.2
Msa0192970	AT1G49360.2	32.110	218	117	11	20	214	8	217	2.20e-14	73.2
Msa0192970	AT1G49360.4	32.110	218	117	11	20	214	8	217	2.20e-14	73.2
Msa0192970	AT4G10695.2	24.790	238	157	8	32	254	4	234	3.56e-14	71.2
Msa0192970	AT4G10695.1	24.790	238	157	8	32	254	4	234	3.56e-14	71.2
Msa0192970	AT4G12370.1	45.455	88	43	3	75	160	18	102	3.86e-13	68.9
Msa0192970	AT4G00893.1	33.333	150	83	5	10	148	38	181	2.95e-11	63.9

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Find 60 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAAGCAAAGGAGAG+TGG	0.624016	2_1:+8782375	Msa0192970:CDS
AAAGGGAAAGCATCGATCAA+AGG	0.578404	2_1:+8783078	Msa0192970:CDS
AACAATGCAATCCTGAGACG+TGG	0.609541	2_1:-8782759	None:intergenic
AAGGATCTGAAAGGAAAACT+AGG	0.543003	2_1:+8783097	Msa0192970:CDS
AATGTTGCAATAGATACTTG+TGG	0.675405	2_1:+8783130	Msa0192970:CDS
AATTTAGTGGATGTGATCCA+TGG	0.540102	2_1:+8782495	Msa0192970:CDS
ACAATGCAATCCTGAGACGT+GGG	0.606280	2_1:-8782758	None:intergenic
ACGTTGCTAATACCAAACAA+TGG	0.689270	2_1:+8782963	Msa0192970:CDS
ACTACACTCGCTCCATTGTT+TGG	0.401720	2_1:-8782975	None:intergenic
ACTCTATGATGCTCAAAATT+TGG	0.258194	2_1:+8783156	Msa0192970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTTGACAGCAGATCATA+AGG	-	chr2_1:8782410-8782429	None:intergenic	30.0%
TGCTGTCAAATATTGCAAAT+AGG	+	chr2_1:8782417-8782436	Msa0192970:CDS	30.0%
GAAACAAGTTATATTCATGG+TGG	-	chr2_1:8782871-8782890	None:intergenic	30.0%
AATGTTGCAATAGATACTTG+TGG	+	chr2_1:8783130-8783149	Msa0192970:CDS	30.0%
ATGTTGCAATAGATACTTGT+GGG	+	chr2_1:8783131-8783150	Msa0192970:CDS	30.0%
ACTCTATGATGCTCAAAATT+TGG	+	chr2_1:8783156-8783175	Msa0192970:CDS	30.0%
ATATTTGACAGCAGATCATA+AGG	-	chr2_1:8782410-8782429	None:intergenic	30.0%
TGCTGTCAAATATTGCAAAT+AGG	+	chr2_1:8782417-8782436	Msa0192970:CDS	30.0%
GAAACAAGTTATATTCATGG+TGG	-	chr2_1:8782871-8782890	None:intergenic	30.0%
AATGTTGCAATAGATACTTG+TGG	+	chr2_1:8783130-8783149	Msa0192970:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	8782347	8783267	8782347	ID=Msa0192970;Name=Msa0192970
chr2_1	mRNA	8782347	8783267	8782347	ID=Msa0192970-mRNA-1;Parent=Msa0192970;Name=Msa0192970-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|306
chr2_1	exon	8782347	8783267	8782347	ID=Msa0192970-mRNA-1:exon:4042;Parent=Msa0192970-mRNA-1
chr2_1	CDS	8782347	8783267	8782347	ID=Msa0192970-mRNA-1:cds;Parent=Msa0192970-mRNA-1

Gene Sequence

>Msa0192970

ATGTCGGAAGCTGATTCTGCCATATGCAAAAAGAAAAGCAAAGGAGAGTGGTCAAGTATACCTTATGATCTGCTGTCAAATATTGCAAATAGGCTGGAACTAATTGATTTTACAAGTTTTCATCATGTGTGCAAAGATTGGCGCTCTAAATTTAGTGGATGTGATCCATGGTTTCTGTTGTATGGTGAAGAAGGTCCTCGTTGTTCCATGCTAAACAAGGATGATAAAGTATACACTATCGAAATTCCAGAACTGGCTGGGTCAACTTGCCTTGCATCCTACGACGGATGGCTGCTTCTCTTTCACGATGATTCATTGTTTTTCTTTTGCCCCTTCTCTAGAGAAAAAATACATCTTCCAAATTGTCCTATCACAGAATCGAATGACTGTGTTGCAGCATTTTCATCTGCTCCCACGTCTCAGGATTGCATTGTTGCCGTGATTAATCACGCCACTCAATATATATTAGAACTGCACACGCTTTATCGGGGAGATAATTCACGGTTTAAACACCAATTTTACCACCATGAATATAACTTGTTTCTCTTTAAAAGGTGTGCATTCTTTATTGAAGGGGAATTCATCTATGCCAGCAATAAACTTGTAGTTATATTCGACGTTGCTAATACCAAACAATGGAGCGAGTGTAGTTTATTGGATATAAAATATCAACGTAATGATGAATCAGTATTGAAATGTAGATTGAGGGATATATTGTCAAAGAAAGCAAAAAAGGGAAAGCATCGATCAAAGGATCTGAAAGGAAAACTAGGACTTGGCGACAATGTTGCAATAGATACTTGTGGGACACTCTATGATGCTCAAAATTTGGTGTGGGGTGATTACATTTGGTCTGTTGCATTATTTGATGATCATCTCCTTAAAGGAGTATGGATCGTGCCAAGATATCATAAACACTAA

Protein sequence

>Msa0192970

MSEADSAICKKKSKGEWSSIPYDLLSNIANRLELIDFTSFHHVCKDWRSKFSGCDPWFLLYGEEGPRCSMLNKDDKVYTIEIPELAGSTCLASYDGWLLLFHDDSLFFFCPFSREKIHLPNCPITESNDCVAAFSSAPTSQDCIVAVINHATQYILELHTLYRGDNSRFKHQFYHHEYNLFLFKRCAFFIEGEFIYASNKLVVIFDVANTKQWSECSLLDIKYQRNDESVLKCRLRDILSKKAKKGKHRSKDLKGKLGLGDNVAIDTCGTLYDAQNLVWGDYIWSVALFDDHLLKGVWIVPRYHKH*