Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192970 | XP_003593755.1 | 67.619 | 315 | 90 | 4 | 1 | 306 | 1 | 312 | 1.36e-133 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192970 | sp|Q9XIA2|FB49_ARATH | 31.878 | 229 | 125 | 11 | 9 | 214 | 100 | 320 | 1.19e-13 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192970 | G7ILH6 | 67.619 | 315 | 90 | 4 | 1 | 306 | 1 | 312 | 6.51e-134 | 392 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0111510 | Msa0192970 | 0.817267 | 3.603841e-52 | -8.615850e-47 |
| Msa0145750 | Msa0192970 | 0.807461 | 4.997667e-50 | -8.615850e-47 |
| Msa0153910 | Msa0192970 | 0.809211 | 2.116339e-50 | -8.615850e-47 |
| Msa0159720 | Msa0192970 | 0.836035 | 1.184573e-56 | -8.615850e-47 |
| Msa0165190 | Msa0192970 | 0.831641 | 1.487695e-55 | -8.615850e-47 |
| Msa0192970 | Msa0235140 | 0.845688 | 3.474159e-59 | -8.615850e-47 |
| Msa0192970 | Msa0267010 | 0.802837 | 4.642007e-49 | -8.615850e-47 |
| Msa0192970 | Msa0270520 | 0.805267 | 1.449713e-49 | -8.615850e-47 |
| Msa0192970 | Msa0306460 | 0.806542 | 7.822304e-50 | -8.615850e-47 |
| Msa0192970 | Msa0313760 | 0.858085 | 1.049513e-62 | -8.615850e-47 |
| Msa0192970 | Msa0342240 | 0.806269 | 8.930035e-50 | -8.615850e-47 |
| Msa0192970 | Msa0384800 | 0.843987 | 9.992476e-59 | -8.615850e-47 |
| Msa0192970 | Msa0414420 | 0.821055 | 4.948993e-53 | -8.615850e-47 |
| Msa0192970 | Msa0423020 | 0.813420 | 2.582884e-51 | -8.615850e-47 |
| Msa0192970 | Msa0452900 | 0.828501 | 8.680485e-55 | -8.615850e-47 |
| Msa0192970 | Msa0564890 | 0.826491 | 2.634786e-54 | -8.615850e-47 |
| Msa0192970 | Msa0726140 | 0.846250 | 2.443399e-59 | -8.615850e-47 |
| Msa0192970 | Msa0743810 | 0.824979 | 6.018621e-54 | -8.615850e-47 |
| Msa0192970 | Msa0745060 | 0.805862 | 1.087475e-49 | -8.615850e-47 |
| Msa0192970 | Msa0767720 | 0.802753 | 4.830983e-49 | -8.615850e-47 |
| Msa0192970 | Msa0783160 | 0.830604 | 2.674304e-55 | -8.615850e-47 |
| Msa0192970 | Msa0811080 | 0.804372 | 2.229805e-49 | -8.615850e-47 |
| Msa0192970 | Msa0825860 | 0.815080 | 1.110410e-51 | -8.615850e-47 |
| Msa0192970 | Msa0846330 | 0.811349 | 7.320145e-51 | -8.615850e-47 |
| Msa0192970 | Msa0846350 | 0.812314 | 4.511883e-51 | -8.615850e-47 |
| Msa0192970 | Msa0885190 | 0.801067 | 1.072642e-48 | -8.615850e-47 |
| Msa0192970 | Msa0885280 | 0.807024 | 6.184443e-50 | -8.615850e-47 |
| Msa0192970 | Msa0885290 | 0.825600 | 4.290813e-54 | -8.615850e-47 |
| Msa0192970 | Msa0954020 | 0.810317 | 1.224206e-50 | -8.615850e-47 |
| Msa0192970 | Msa0989060 | 0.813497 | 2.484797e-51 | -8.615850e-47 |
| Msa0192970 | Msa1023010 | 0.802393 | 5.729984e-49 | -8.615850e-47 |
| Msa0192970 | Msa1025360 | 0.807619 | 4.626809e-50 | -8.615850e-47 |
| Msa0192970 | Msa1044840 | 0.810228 | 1.279292e-50 | -8.615850e-47 |
| Msa0192970 | Msa1092990 | 0.800711 | 1.267652e-48 | -8.615850e-47 |
| Msa0192970 | Msa1099970 | 0.800942 | 1.137174e-48 | -8.615850e-47 |
| Msa0192970 | Msa1100980 | 0.816389 | 5.671095e-52 | -8.615850e-47 |
| Msa0192970 | Msa1135740 | 0.807917 | 3.998751e-50 | -8.615850e-47 |
| Msa0192970 | Msa1136090 | 0.842122 | 3.136053e-58 | -8.615850e-47 |
| Msa0192970 | Msa1187940 | 0.805284 | 1.437573e-49 | -8.615850e-47 |
| Msa0192970 | Msa1192640 | 0.829066 | 6.337405e-55 | -8.615850e-47 |
| Msa0192970 | Msa1269670 | 0.804577 | 2.020983e-49 | -8.615850e-47 |
| Msa0192970 | Msa1270230 | 0.812983 | 3.220683e-51 | -8.615850e-47 |
| Msa0192970 | Msa1283330 | 0.812903 | 3.354045e-51 | -8.615850e-47 |
| Msa0192970 | Msa1285930 | 0.850716 | 1.418371e-60 | -8.615850e-47 |
| Msa0192970 | Msa1287800 | 0.816400 | 5.639084e-52 | -8.615850e-47 |
| Msa0192970 | Msa1287810 | 0.821398 | 4.123497e-53 | -8.615850e-47 |
| Msa0192970 | Msa1404000 | 0.834100 | 3.643787e-56 | -8.615850e-47 |
| Msa0192970 | Msa1415310 | 0.801772 | 7.689953e-49 | -8.615850e-47 |
| Msa0192970 | Msa1422180 | 0.816577 | 5.146212e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192970 | MtrunA17_Chr2g0283611 | 67.619 | 315 | 90 | 4 | 1 | 306 | 1 | 312 | 1.25e-137 | 392 |
| Msa0192970 | MtrunA17_Chr1g0178491 | 35.256 | 156 | 90 | 4 | 17 | 164 | 36 | 188 | 5.22e-22 | 94.7 |
| Msa0192970 | MtrunA17_Chr2g0283601 | 89.130 | 46 | 5 | 0 | 1 | 46 | 1 | 46 | 9.85e-22 | 87.4 |
| Msa0192970 | MtrunA17_Chr2g0283601 | 75.556 | 45 | 11 | 0 | 262 | 306 | 42 | 86 | 1.57e-17 | 76.3 |
| Msa0192970 | MtrunA17_Chr7g0266441 | 29.448 | 163 | 98 | 4 | 17 | 165 | 32 | 191 | 3.69e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0192970 | AT4G10660.1 | 31.515 | 165 | 96 | 6 | 74 | 229 | 38 | 194 | 1.51e-16 | 79.0 |
| Msa0192970 | AT1G49360.1 | 31.878 | 229 | 125 | 11 | 9 | 214 | 100 | 320 | 1.21e-14 | 74.7 |
| Msa0192970 | AT1G49360.5 | 31.878 | 229 | 125 | 11 | 9 | 214 | 77 | 297 | 1.22e-14 | 74.3 |
| Msa0192970 | AT1G49360.3 | 32.110 | 218 | 117 | 11 | 20 | 214 | 8 | 217 | 2.20e-14 | 73.2 |
| Msa0192970 | AT1G49360.2 | 32.110 | 218 | 117 | 11 | 20 | 214 | 8 | 217 | 2.20e-14 | 73.2 |
| Msa0192970 | AT1G49360.4 | 32.110 | 218 | 117 | 11 | 20 | 214 | 8 | 217 | 2.20e-14 | 73.2 |
| Msa0192970 | AT4G10695.2 | 24.790 | 238 | 157 | 8 | 32 | 254 | 4 | 234 | 3.56e-14 | 71.2 |
| Msa0192970 | AT4G10695.1 | 24.790 | 238 | 157 | 8 | 32 | 254 | 4 | 234 | 3.56e-14 | 71.2 |
| Msa0192970 | AT4G12370.1 | 45.455 | 88 | 43 | 3 | 75 | 160 | 18 | 102 | 3.86e-13 | 68.9 |
| Msa0192970 | AT4G00893.1 | 33.333 | 150 | 83 | 5 | 10 | 148 | 38 | 181 | 2.95e-11 | 63.9 |
Find 60 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGATGATCATCTCCTTAA+AGG | 0.136143 | 2_1:+8783211 | Msa0192970:CDS |
| GCACGATCCATACTCCTTTA+AGG | 0.163291 | 2_1:-8783225 | None:intergenic |
| ATAACTTGTTTCTCTTTAAA+AGG | 0.181471 | 2_1:+8782879 | Msa0192970:CDS |
| TATATTCATGGTGGTAAAAT+TGG | 0.213686 | 2_1:-8782859 | None:intergenic |
| ATGGAGCGAGTGTAGTTTAT+TGG | 0.249967 | 2_1:+8782982 | Msa0192970:CDS |
| ACTCTATGATGCTCAAAATT+TGG | 0.258194 | 2_1:+8783156 | Msa0192970:CDS |
| CAAGTTGACCCAGCCAGTTC+TGG | 0.303744 | 2_1:-8782593 | None:intergenic |
| GATTCTGTGATAGGACAATT+TGG | 0.336565 | 2_1:-8782704 | None:intergenic |
| ATCATCTCCTTAAAGGAGTA+TGG | 0.340645 | 2_1:+8783218 | Msa0192970:CDS |
| AGAGAAACAAGTTATATTCA+TGG | 0.355620 | 2_1:-8782871 | None:intergenic |
| TCTTAGTGTTTATGATATCT+TGG | 0.361386 | 2_1:-8783247 | None:intergenic |
| TGCTGTCAAATATTGCAAAT+AGG | 0.363050 | 2_1:+8782417 | Msa0192970:CDS |
| TAGAACTGCACACGCTTTAT+CGG | 0.366007 | 2_1:+8782813 | Msa0192970:CDS |
| GATTGGCGCTCTAAATTTAG+TGG | 0.386788 | 2_1:+8782482 | Msa0192970:CDS |
| TTCATCTGCTCCCACGTCTC+AGG | 0.396997 | 2_1:+8782748 | Msa0192970:CDS |
| CAGTCATTCGATTCTGTGAT+AGG | 0.398376 | 2_1:-8782713 | None:intergenic |
| AGAACTGCACACGCTTTATC+GGG | 0.398949 | 2_1:+8782814 | Msa0192970:CDS |
| ACTACACTCGCTCCATTGTT+TGG | 0.401720 | 2_1:-8782975 | None:intergenic |
| TTCATCATGTGTGCAAAGAT+TGG | 0.403215 | 2_1:+8782465 | Msa0192970:CDS |
| TATAACTACAAGTTTATTGC+TGG | 0.411591 | 2_1:-8782936 | None:intergenic |
| CACTATCGAAATTCCAGAAC+TGG | 0.428141 | 2_1:+8782580 | Msa0192970:CDS |
| TGGTGTGGGGTGATTACATT+TGG | 0.434879 | 2_1:+8783176 | Msa0192970:CDS |
| GATCCATGGTTTCTGTTGTA+TGG | 0.439332 | 2_1:+8782509 | Msa0192970:CDS |
| GTCAAATATTGCAAATAGGC+TGG | 0.448250 | 2_1:+8782421 | Msa0192970:CDS |
| AGGTGTGCATTCTTTATTGA+AGG | 0.450535 | 2_1:+8782899 | Msa0192970:CDS |
| CTGAAAGGAAAACTAGGACT+TGG | 0.474308 | 2_1:+8783103 | Msa0192970:CDS |
| GCCTTGCATCCTACGACGGA+TGG | 0.482267 | 2_1:+8782615 | Msa0192970:CDS |
| TTTATCATCCTTGTTTAGCA+TGG | 0.488027 | 2_1:-8782552 | None:intergenic |
| ATCGAAATTCCAGAACTGGC+TGG | 0.492699 | 2_1:+8782584 | Msa0192970:CDS |
| ATATTTGACAGCAGATCATA+AGG | 0.498174 | 2_1:-8782407 | None:intergenic |
| AGTATTGAAATGTAGATTGA+GGG | 0.511372 | 2_1:+8783033 | Msa0192970:CDS |
| GGTGTGCATTCTTTATTGAA+GGG | 0.534190 | 2_1:+8782900 | Msa0192970:CDS |
| CAGTATTGAAATGTAGATTG+AGG | 0.535602 | 2_1:+8783032 | Msa0192970:CDS |
| ATGTTGCAATAGATACTTGT+GGG | 0.537656 | 2_1:+8783131 | Msa0192970:CDS |
| AATTTAGTGGATGTGATCCA+TGG | 0.540102 | 2_1:+8782495 | Msa0192970:CDS |
| AAGGATCTGAAAGGAAAACT+AGG | 0.543003 | 2_1:+8783097 | Msa0192970:CDS |
| TCGAAATTCCAGAACTGGCT+GGG | 0.550468 | 2_1:+8782585 | Msa0192970:CDS |
| TTTATCGGGGAGATAATTCA+CGG | 0.550801 | 2_1:+8782828 | Msa0192970:CDS |
| GTGTGCATTCTTTATTGAAG+GGG | 0.552789 | 2_1:+8782901 | Msa0192970:CDS |
| GCCATCCGTCGTAGGATGCA+AGG | 0.563825 | 2_1:-8782616 | None:intergenic |
| TGATGCTCAAAATTTGGTGT+GGG | 0.569401 | 2_1:+8783162 | Msa0192970:CDS |
| TTTCTGTTGTATGGTGAAGA+AGG | 0.575330 | 2_1:+8782518 | Msa0192970:CDS |
| AAAGGGAAAGCATCGATCAA+AGG | 0.578404 | 2_1:+8783078 | Msa0192970:CDS |
| ATGATGCTCAAAATTTGGTG+TGG | 0.583531 | 2_1:+8783161 | Msa0192970:CDS |
| GAGAAGCAGCCATCCGTCGT+AGG | 0.605702 | 2_1:-8782624 | None:intergenic |
| ACAATGCAATCCTGAGACGT+GGG | 0.606280 | 2_1:-8782758 | None:intergenic |
| AACAATGCAATCCTGAGACG+TGG | 0.609541 | 2_1:-8782759 | None:intergenic |
| TCGTTGTTCCATGCTAAACA+AGG | 0.611298 | 2_1:+8782544 | Msa0192970:CDS |
| TTGAGTGGCGTGATTAATCA+CGG | 0.617271 | 2_1:-8782783 | None:intergenic |
| TCACCATACAACAGAAACCA+TGG | 0.617900 | 2_1:-8782512 | None:intergenic |
| CATCGATCAAAGGATCTGAA+AGG | 0.623852 | 2_1:+8783088 | Msa0192970:CDS |
| AAAAGAAAAGCAAAGGAGAG+TGG | 0.624016 | 2_1:+8782375 | Msa0192970:CDS |
| ACTTGCCTTGCATCCTACGA+CGG | 0.635214 | 2_1:+8782611 | Msa0192970:CDS |
| CAGTTCTAATATATATTGAG+TGG | 0.641322 | 2_1:-8782798 | None:intergenic |
| GAACTGCACACGCTTTATCG+GGG | 0.662727 | 2_1:+8782815 | Msa0192970:CDS |
| AATGTTGCAATAGATACTTG+TGG | 0.675405 | 2_1:+8783130 | Msa0192970:CDS |
| GAAACAAGTTATATTCATGG+TGG | 0.683671 | 2_1:-8782868 | None:intergenic |
| ACGTTGCTAATACCAAACAA+TGG | 0.689270 | 2_1:+8782963 | Msa0192970:CDS |
| GATGCTCAAAATTTGGTGTG+GGG | 0.729523 | 2_1:+8783163 | Msa0192970:CDS |
| TTGTTTAGCATGGAACAACG+AGG | 0.763244 | 2_1:-8782542 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAACTTGTTTCTCTTTAAA+AGG | + | chr2_1:8782879-8782898 | Msa0192970:CDS | 20.0% |
| !!! | ATAACTTGTTTCTCTTTAAA+AGG | + | chr2_1:8782879-8782898 | Msa0192970:CDS | 20.0% |
| !!! | TTTGCTTTTCTTTTTGCATA+TGG | - | chr2_1:8782369-8782388 | None:intergenic | 25.0% |
| ! | ATATGCAAAAAGAAAAGCAA+AGG | + | chr2_1:8782368-8782387 | Msa0192970:CDS | 25.0% |
| !!! | TGTATTTTTTCTCTAGAGAA+GGG | - | chr2_1:8782680-8782699 | None:intergenic | 25.0% |
| !!! | ATGTATTTTTTCTCTAGAGA+AGG | - | chr2_1:8782681-8782700 | None:intergenic | 25.0% |
| !! | CAGTTCTAATATATATTGAG+TGG | - | chr2_1:8782801-8782820 | None:intergenic | 25.0% |
| ! | TATATTCATGGTGGTAAAAT+TGG | - | chr2_1:8782862-8782881 | None:intergenic | 25.0% |
| ! | AGAGAAACAAGTTATATTCA+TGG | - | chr2_1:8782874-8782893 | None:intergenic | 25.0% |
| ! | TATAACTACAAGTTTATTGC+TGG | - | chr2_1:8782939-8782958 | None:intergenic | 25.0% |
| !! | AGTATTGAAATGTAGATTGA+GGG | + | chr2_1:8783033-8783052 | Msa0192970:CDS | 25.0% |
| ! | ATTGTCAAAGAAAGCAAAAA+AGG | + | chr2_1:8783060-8783079 | Msa0192970:CDS | 25.0% |
| ! | TTGTCAAAGAAAGCAAAAAA+GGG | + | chr2_1:8783061-8783080 | Msa0192970:CDS | 25.0% |
| !!! | TTTGCTTTTCTTTTTGCATA+TGG | - | chr2_1:8782369-8782388 | None:intergenic | 25.0% |
| ! | ATATGCAAAAAGAAAAGCAA+AGG | + | chr2_1:8782368-8782387 | Msa0192970:CDS | 25.0% |
| !!! | TGTATTTTTTCTCTAGAGAA+GGG | - | chr2_1:8782680-8782699 | None:intergenic | 25.0% |
| !!! | ATGTATTTTTTCTCTAGAGA+AGG | - | chr2_1:8782681-8782700 | None:intergenic | 25.0% |
| !! | CAGTTCTAATATATATTGAG+TGG | - | chr2_1:8782801-8782820 | None:intergenic | 25.0% |
| ! | TATATTCATGGTGGTAAAAT+TGG | - | chr2_1:8782862-8782881 | None:intergenic | 25.0% |
| ! | AGAGAAACAAGTTATATTCA+TGG | - | chr2_1:8782874-8782893 | None:intergenic | 25.0% |
| ! | TATAACTACAAGTTTATTGC+TGG | - | chr2_1:8782939-8782958 | None:intergenic | 25.0% |
| !! | AGTATTGAAATGTAGATTGA+GGG | + | chr2_1:8783033-8783052 | Msa0192970:CDS | 25.0% |
| ! | ATTGTCAAAGAAAGCAAAAA+AGG | + | chr2_1:8783060-8783079 | Msa0192970:CDS | 25.0% |
| ! | TTGTCAAAGAAAGCAAAAAA+GGG | + | chr2_1:8783061-8783080 | Msa0192970:CDS | 25.0% |
| ATATTTGACAGCAGATCATA+AGG | - | chr2_1:8782410-8782429 | None:intergenic | 30.0% | |
| TGCTGTCAAATATTGCAAAT+AGG | + | chr2_1:8782417-8782436 | Msa0192970:CDS | 30.0% | |
| ! | TTTATCATCCTTGTTTAGCA+TGG | - | chr2_1:8782555-8782574 | None:intergenic | 30.0% |
| !!! | GTATTTTTTCTCTAGAGAAG+GGG | - | chr2_1:8782679-8782698 | None:intergenic | 30.0% |
| GAAACAAGTTATATTCATGG+TGG | - | chr2_1:8782871-8782890 | None:intergenic | 30.0% | |
| ! | CAGTATTGAAATGTAGATTG+AGG | + | chr2_1:8783032-8783051 | Msa0192970:CDS | 30.0% |
| AATGTTGCAATAGATACTTG+TGG | + | chr2_1:8783130-8783149 | Msa0192970:CDS | 30.0% | |
| ATGTTGCAATAGATACTTGT+GGG | + | chr2_1:8783131-8783150 | Msa0192970:CDS | 30.0% | |
| ACTCTATGATGCTCAAAATT+TGG | + | chr2_1:8783156-8783175 | Msa0192970:CDS | 30.0% | |
| ! | TTTGATGATCATCTCCTTAA+AGG | + | chr2_1:8783211-8783230 | Msa0192970:CDS | 30.0% |
| ATATTTGACAGCAGATCATA+AGG | - | chr2_1:8782410-8782429 | None:intergenic | 30.0% | |
| TGCTGTCAAATATTGCAAAT+AGG | + | chr2_1:8782417-8782436 | Msa0192970:CDS | 30.0% | |
| ! | TTTATCATCCTTGTTTAGCA+TGG | - | chr2_1:8782555-8782574 | None:intergenic | 30.0% |
| !!! | GTATTTTTTCTCTAGAGAAG+GGG | - | chr2_1:8782679-8782698 | None:intergenic | 30.0% |
| GAAACAAGTTATATTCATGG+TGG | - | chr2_1:8782871-8782890 | None:intergenic | 30.0% | |
| ! | CAGTATTGAAATGTAGATTG+AGG | + | chr2_1:8783032-8783051 | Msa0192970:CDS | 30.0% |
| AATGTTGCAATAGATACTTG+TGG | + | chr2_1:8783130-8783149 | Msa0192970:CDS | 30.0% | |
| ATGTTGCAATAGATACTTGT+GGG | + | chr2_1:8783131-8783150 | Msa0192970:CDS | 30.0% | |
| ACTCTATGATGCTCAAAATT+TGG | + | chr2_1:8783156-8783175 | Msa0192970:CDS | 30.0% | |
| ! | TTTGATGATCATCTCCTTAA+AGG | + | chr2_1:8783211-8783230 | Msa0192970:CDS | 30.0% |
| AAAAGAAAAGCAAAGGAGAG+TGG | + | chr2_1:8782375-8782394 | Msa0192970:CDS | 35.0% | |
| GTCAAATATTGCAAATAGGC+TGG | + | chr2_1:8782421-8782440 | Msa0192970:CDS | 35.0% | |
| TTCATCATGTGTGCAAAGAT+TGG | + | chr2_1:8782465-8782484 | Msa0192970:CDS | 35.0% | |
| ! | AATTTAGTGGATGTGATCCA+TGG | + | chr2_1:8782495-8782514 | Msa0192970:CDS | 35.0% |
| TTTCTGTTGTATGGTGAAGA+AGG | + | chr2_1:8782518-8782537 | Msa0192970:CDS | 35.0% | |
| GATTCTGTGATAGGACAATT+TGG | - | chr2_1:8782707-8782726 | None:intergenic | 35.0% | |
| TTTATCGGGGAGATAATTCA+CGG | + | chr2_1:8782828-8782847 | Msa0192970:CDS | 35.0% | |
| AGGTGTGCATTCTTTATTGA+AGG | + | chr2_1:8782899-8782918 | Msa0192970:CDS | 35.0% | |
| GGTGTGCATTCTTTATTGAA+GGG | + | chr2_1:8782900-8782919 | Msa0192970:CDS | 35.0% | |
| GTGTGCATTCTTTATTGAAG+GGG | + | chr2_1:8782901-8782920 | Msa0192970:CDS | 35.0% | |
| ACGTTGCTAATACCAAACAA+TGG | + | chr2_1:8782963-8782982 | Msa0192970:CDS | 35.0% | |
| AAGGATCTGAAAGGAAAACT+AGG | + | chr2_1:8783097-8783116 | Msa0192970:CDS | 35.0% | |
| ! | ATGATGCTCAAAATTTGGTG+TGG | + | chr2_1:8783161-8783180 | Msa0192970:CDS | 35.0% |
| !! | TGATGCTCAAAATTTGGTGT+GGG | + | chr2_1:8783162-8783181 | Msa0192970:CDS | 35.0% |
| ATCATCTCCTTAAAGGAGTA+TGG | + | chr2_1:8783218-8783237 | Msa0192970:CDS | 35.0% | |
| AAAAGAAAAGCAAAGGAGAG+TGG | + | chr2_1:8782375-8782394 | Msa0192970:CDS | 35.0% | |
| GTCAAATATTGCAAATAGGC+TGG | + | chr2_1:8782421-8782440 | Msa0192970:CDS | 35.0% | |
| TTCATCATGTGTGCAAAGAT+TGG | + | chr2_1:8782465-8782484 | Msa0192970:CDS | 35.0% | |
| ! | AATTTAGTGGATGTGATCCA+TGG | + | chr2_1:8782495-8782514 | Msa0192970:CDS | 35.0% |
| TTTCTGTTGTATGGTGAAGA+AGG | + | chr2_1:8782518-8782537 | Msa0192970:CDS | 35.0% | |
| GATTCTGTGATAGGACAATT+TGG | - | chr2_1:8782707-8782726 | None:intergenic | 35.0% | |
| TTTATCGGGGAGATAATTCA+CGG | + | chr2_1:8782828-8782847 | Msa0192970:CDS | 35.0% | |
| AGGTGTGCATTCTTTATTGA+AGG | + | chr2_1:8782899-8782918 | Msa0192970:CDS | 35.0% | |
| GGTGTGCATTCTTTATTGAA+GGG | + | chr2_1:8782900-8782919 | Msa0192970:CDS | 35.0% | |
| GTGTGCATTCTTTATTGAAG+GGG | + | chr2_1:8782901-8782920 | Msa0192970:CDS | 35.0% | |
| ACGTTGCTAATACCAAACAA+TGG | + | chr2_1:8782963-8782982 | Msa0192970:CDS | 35.0% | |
| AAGGATCTGAAAGGAAAACT+AGG | + | chr2_1:8783097-8783116 | Msa0192970:CDS | 35.0% | |
| ! | ATGATGCTCAAAATTTGGTG+TGG | + | chr2_1:8783161-8783180 | Msa0192970:CDS | 35.0% |
| !! | TGATGCTCAAAATTTGGTGT+GGG | + | chr2_1:8783162-8783181 | Msa0192970:CDS | 35.0% |
| ATCATCTCCTTAAAGGAGTA+TGG | + | chr2_1:8783218-8783237 | Msa0192970:CDS | 35.0% | |
| ! | GATTGGCGCTCTAAATTTAG+TGG | + | chr2_1:8782482-8782501 | Msa0192970:CDS | 40.0% |
| GATCCATGGTTTCTGTTGTA+TGG | + | chr2_1:8782509-8782528 | Msa0192970:CDS | 40.0% | |
| TCACCATACAACAGAAACCA+TGG | - | chr2_1:8782515-8782534 | None:intergenic | 40.0% | |
| TTGTTTAGCATGGAACAACG+AGG | - | chr2_1:8782545-8782564 | None:intergenic | 40.0% | |
| TCGTTGTTCCATGCTAAACA+AGG | + | chr2_1:8782544-8782563 | Msa0192970:CDS | 40.0% | |
| CACTATCGAAATTCCAGAAC+TGG | + | chr2_1:8782580-8782599 | Msa0192970:CDS | 40.0% | |
| CAGTCATTCGATTCTGTGAT+AGG | - | chr2_1:8782716-8782735 | None:intergenic | 40.0% | |
| TTGAGTGGCGTGATTAATCA+CGG | - | chr2_1:8782786-8782805 | None:intergenic | 40.0% | |
| TAGAACTGCACACGCTTTAT+CGG | + | chr2_1:8782813-8782832 | Msa0192970:CDS | 40.0% | |
| ATGGAGCGAGTGTAGTTTAT+TGG | + | chr2_1:8782982-8783001 | Msa0192970:CDS | 40.0% | |
| !! | AAAGGGAAAGCATCGATCAA+AGG | + | chr2_1:8783078-8783097 | Msa0192970:CDS | 40.0% |
| CATCGATCAAAGGATCTGAA+AGG | + | chr2_1:8783088-8783107 | Msa0192970:CDS | 40.0% | |
| CTGAAAGGAAAACTAGGACT+TGG | + | chr2_1:8783103-8783122 | Msa0192970:CDS | 40.0% | |
| !! | GATGCTCAAAATTTGGTGTG+GGG | + | chr2_1:8783163-8783182 | Msa0192970:CDS | 40.0% |
| ! | GATTGGCGCTCTAAATTTAG+TGG | + | chr2_1:8782482-8782501 | Msa0192970:CDS | 40.0% |
| GATCCATGGTTTCTGTTGTA+TGG | + | chr2_1:8782509-8782528 | Msa0192970:CDS | 40.0% | |
| TCACCATACAACAGAAACCA+TGG | - | chr2_1:8782515-8782534 | None:intergenic | 40.0% | |
| TTGTTTAGCATGGAACAACG+AGG | - | chr2_1:8782545-8782564 | None:intergenic | 40.0% | |
| TCGTTGTTCCATGCTAAACA+AGG | + | chr2_1:8782544-8782563 | Msa0192970:CDS | 40.0% | |
| CACTATCGAAATTCCAGAAC+TGG | + | chr2_1:8782580-8782599 | Msa0192970:CDS | 40.0% | |
| CAGTCATTCGATTCTGTGAT+AGG | - | chr2_1:8782716-8782735 | None:intergenic | 40.0% | |
| TTGAGTGGCGTGATTAATCA+CGG | - | chr2_1:8782786-8782805 | None:intergenic | 40.0% | |
| TAGAACTGCACACGCTTTAT+CGG | + | chr2_1:8782813-8782832 | Msa0192970:CDS | 40.0% | |
| ATGGAGCGAGTGTAGTTTAT+TGG | + | chr2_1:8782982-8783001 | Msa0192970:CDS | 40.0% | |
| !! | AAAGGGAAAGCATCGATCAA+AGG | + | chr2_1:8783078-8783097 | Msa0192970:CDS | 40.0% |
| CATCGATCAAAGGATCTGAA+AGG | + | chr2_1:8783088-8783107 | Msa0192970:CDS | 40.0% | |
| CTGAAAGGAAAACTAGGACT+TGG | + | chr2_1:8783103-8783122 | Msa0192970:CDS | 40.0% | |
| !! | GATGCTCAAAATTTGGTGTG+GGG | + | chr2_1:8783163-8783182 | Msa0192970:CDS | 40.0% |
| ATCGAAATTCCAGAACTGGC+TGG | + | chr2_1:8782584-8782603 | Msa0192970:CDS | 45.0% | |
| TCGAAATTCCAGAACTGGCT+GGG | + | chr2_1:8782585-8782604 | Msa0192970:CDS | 45.0% | |
| ACAATGCAATCCTGAGACGT+GGG | - | chr2_1:8782761-8782780 | None:intergenic | 45.0% | |
| AACAATGCAATCCTGAGACG+TGG | - | chr2_1:8782762-8782781 | None:intergenic | 45.0% | |
| AGAACTGCACACGCTTTATC+GGG | + | chr2_1:8782814-8782833 | Msa0192970:CDS | 45.0% | |
| ACTACACTCGCTCCATTGTT+TGG | - | chr2_1:8782978-8782997 | None:intergenic | 45.0% | |
| TGGTGTGGGGTGATTACATT+TGG | + | chr2_1:8783176-8783195 | Msa0192970:CDS | 45.0% | |
| GCACGATCCATACTCCTTTA+AGG | - | chr2_1:8783228-8783247 | None:intergenic | 45.0% | |
| ATCGAAATTCCAGAACTGGC+TGG | + | chr2_1:8782584-8782603 | Msa0192970:CDS | 45.0% | |
| TCGAAATTCCAGAACTGGCT+GGG | + | chr2_1:8782585-8782604 | Msa0192970:CDS | 45.0% | |
| ACAATGCAATCCTGAGACGT+GGG | - | chr2_1:8782761-8782780 | None:intergenic | 45.0% | |
| AACAATGCAATCCTGAGACG+TGG | - | chr2_1:8782762-8782781 | None:intergenic | 45.0% | |
| AGAACTGCACACGCTTTATC+GGG | + | chr2_1:8782814-8782833 | Msa0192970:CDS | 45.0% | |
| ACTACACTCGCTCCATTGTT+TGG | - | chr2_1:8782978-8782997 | None:intergenic | 45.0% | |
| TGGTGTGGGGTGATTACATT+TGG | + | chr2_1:8783176-8783195 | Msa0192970:CDS | 45.0% | |
| GCACGATCCATACTCCTTTA+AGG | - | chr2_1:8783228-8783247 | None:intergenic | 45.0% | |
| ACTTGCCTTGCATCCTACGA+CGG | + | chr2_1:8782611-8782630 | Msa0192970:CDS | 50.0% | |
| GAACTGCACACGCTTTATCG+GGG | + | chr2_1:8782815-8782834 | Msa0192970:CDS | 50.0% | |
| ACTTGCCTTGCATCCTACGA+CGG | + | chr2_1:8782611-8782630 | Msa0192970:CDS | 50.0% | |
| GAACTGCACACGCTTTATCG+GGG | + | chr2_1:8782815-8782834 | Msa0192970:CDS | 50.0% | |
| ! | CAAGTTGACCCAGCCAGTTC+TGG | - | chr2_1:8782596-8782615 | None:intergenic | 55.0% |
| TTCATCTGCTCCCACGTCTC+AGG | + | chr2_1:8782748-8782767 | Msa0192970:CDS | 55.0% | |
| ! | CAAGTTGACCCAGCCAGTTC+TGG | - | chr2_1:8782596-8782615 | None:intergenic | 55.0% |
| TTCATCTGCTCCCACGTCTC+AGG | + | chr2_1:8782748-8782767 | Msa0192970:CDS | 55.0% | |
| GCCTTGCATCCTACGACGGA+TGG | + | chr2_1:8782615-8782634 | Msa0192970:CDS | 60.0% | |
| GCCATCCGTCGTAGGATGCA+AGG | - | chr2_1:8782619-8782638 | None:intergenic | 60.0% | |
| GAGAAGCAGCCATCCGTCGT+AGG | - | chr2_1:8782627-8782646 | None:intergenic | 60.0% | |
| GCCTTGCATCCTACGACGGA+TGG | + | chr2_1:8782615-8782634 | Msa0192970:CDS | 60.0% | |
| GCCATCCGTCGTAGGATGCA+AGG | - | chr2_1:8782619-8782638 | None:intergenic | 60.0% | |
| GAGAAGCAGCCATCCGTCGT+AGG | - | chr2_1:8782627-8782646 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 8782347 | 8783267 | 8782347 | ID=Msa0192970;Name=Msa0192970 |
| chr2_1 | mRNA | 8782347 | 8783267 | 8782347 | ID=Msa0192970-mRNA-1;Parent=Msa0192970;Name=Msa0192970-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|306 |
| chr2_1 | exon | 8782347 | 8783267 | 8782347 | ID=Msa0192970-mRNA-1:exon:4042;Parent=Msa0192970-mRNA-1 |
| chr2_1 | CDS | 8782347 | 8783267 | 8782347 | ID=Msa0192970-mRNA-1:cds;Parent=Msa0192970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
