Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164290 | sp|O81221|ACT_GOSHI | 98.143 | 377 | 7 | 0 | 1 | 377 | 1 | 377 | 0.0 | 774 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164290 | B7FIH3 | 99.735 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022260 | Msa0164290 | 0.881157 | 3.029529e-70 | -8.615850e-47 |
| Msa0077560 | Msa0164290 | 0.807121 | 5.901012e-50 | -8.615850e-47 |
| Msa0118270 | Msa0164290 | 0.894911 | 1.578421e-75 | -8.615850e-47 |
| Msa0161400 | Msa0164290 | 0.897720 | 1.069140e-76 | -8.615850e-47 |
| Msa0164290 | Msa0204950 | 0.818545 | 1.853526e-52 | -8.615850e-47 |
| Msa0164290 | Msa0249850 | 0.817561 | 3.093148e-52 | -8.615850e-47 |
| Msa0164290 | Msa0281470 | 0.802393 | 5.731642e-49 | -8.615850e-47 |
| Msa0164290 | Msa0320600 | 0.818082 | 2.359488e-52 | -8.615850e-47 |
| Msa0164290 | Msa0440350 | 0.810186 | 1.306302e-50 | -8.615850e-47 |
| Msa0164290 | Msa0519810 | 0.811371 | 7.239849e-51 | -8.615850e-47 |
| Msa0164290 | Msa0574900 | 0.816880 | 4.402236e-52 | -8.615850e-47 |
| Msa0164290 | Msa0617940 | 0.810134 | 1.340573e-50 | -8.615850e-47 |
| Msa0164290 | Msa0692790 | 0.811938 | 5.450793e-51 | -8.615850e-47 |
| Msa0164290 | Msa0716890 | 0.826427 | 2.728704e-54 | -8.615850e-47 |
| Msa0164290 | Msa0758030 | 0.834460 | 2.958558e-56 | -8.615850e-47 |
| Msa0164290 | Msa0837710 | 0.801643 | 8.174908e-49 | -8.615850e-47 |
| Msa0164290 | Msa1257720 | 0.802626 | 5.129943e-49 | -8.615850e-47 |
| Msa0164290 | Msa1366150 | 0.800927 | 1.145659e-48 | -8.615850e-47 |
| Msa0164290 | Msa1387440 | 0.824015 | 1.014494e-53 | -8.615850e-47 |
| Msa0164290 | Msa1404680 | 0.804642 | 1.958668e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164290 | MtrunA17_Chr1g0175391 | 99.735 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 0.0 | 782 |
| Msa0164290 | MtrunA17_Chr2g0328091 | 98.408 | 377 | 6 | 0 | 1 | 377 | 1 | 377 | 0.0 | 775 |
| Msa0164290 | MtrunA17_Chr7g0258721 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 770 |
| Msa0164290 | MtrunA17_Chr6g0448881 | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 769 |
| Msa0164290 | MtrunA17_Chr7g0223901 | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 766 |
| Msa0164290 | MtrunA17_Chr3g0129641 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0164290 | MtrunA17_Chr2g0278591 | 93.634 | 377 | 24 | 0 | 1 | 377 | 1 | 377 | 0.0 | 749 |
| Msa0164290 | MtrunA17_Chr7g0224401 | 43.272 | 379 | 201 | 3 | 10 | 374 | 7 | 385 | 5.64e-120 | 352 |
| Msa0164290 | MtrunA17_Chr5g0427591 | 37.892 | 446 | 204 | 11 | 1 | 376 | 1 | 443 | 3.85e-94 | 288 |
| Msa0164290 | MtrunA17_Chr8g0361001 | 37.892 | 446 | 204 | 11 | 1 | 376 | 1 | 443 | 5.74e-94 | 288 |
| Msa0164290 | MtrunA17_Chr8g0381261 | 34.550 | 411 | 219 | 8 | 10 | 372 | 10 | 418 | 9.19e-72 | 230 |
| Msa0164290 | MtrunA17_Chr3g0089031 | 37.766 | 376 | 208 | 9 | 11 | 377 | 5 | 363 | 3.62e-68 | 219 |
| Msa0164290 | MtrunA17_Chr2g0305361 | 27.650 | 434 | 248 | 7 | 8 | 377 | 6 | 437 | 1.45e-56 | 191 |
| Msa0164290 | MtrunA17_Chr3g0080021 | 30.640 | 297 | 182 | 9 | 91 | 371 | 179 | 467 | 3.96e-40 | 148 |
| Msa0164290 | MtrunA17_Chr8g0369101 | 31.399 | 293 | 174 | 10 | 91 | 366 | 187 | 469 | 9.62e-36 | 136 |
| Msa0164290 | MtrunA17_Chr3g0111971 | 29.365 | 252 | 159 | 7 | 9 | 245 | 21 | 268 | 2.28e-22 | 99.0 |
| Msa0164290 | MtrunA17_Chr3g0111971 | 33.607 | 122 | 78 | 2 | 250 | 368 | 586 | 707 | 1.63e-15 | 78.2 |
| Msa0164290 | MtrunA17_Chr8g0336071 | 41.053 | 95 | 56 | 0 | 105 | 199 | 1 | 95 | 9.90e-20 | 83.2 |
| Msa0164290 | MtrunA17_Chr8g0336061 | 41.304 | 92 | 41 | 1 | 241 | 319 | 12 | 103 | 5.45e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164290 | AT3G53750.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0164290 | AT3G53750.2 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0164290 | AT2G37620.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0164290 | AT2G37620.3 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0164290 | AT2G37620.2 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0164290 | AT2G37620.4 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0164290 | AT3G46520.2 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0164290 | AT3G46520.1 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0164290 | AT5G09810.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0164290 | AT3G12110.1 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0164290 | AT5G59370.2 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0164290 | AT5G59370.1 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0164290 | AT3G18780.2 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 746 |
| Msa0164290 | AT3G18780.3 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 746 |
| Msa0164290 | AT1G49240.1 | 92.573 | 377 | 28 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0164290 | AT3G18780.1 | 92.758 | 359 | 26 | 0 | 1 | 359 | 1 | 359 | 0.0 | 705 |
| Msa0164290 | AT2G42100.1 | 84.783 | 368 | 56 | 0 | 10 | 377 | 11 | 378 | 0.0 | 676 |
| Msa0164290 | AT2G42090.1 | 70.541 | 370 | 104 | 1 | 7 | 376 | 1 | 365 | 0.0 | 566 |
| Msa0164290 | AT2G42170.1 | 78.012 | 332 | 70 | 1 | 46 | 377 | 1 | 329 | 0.0 | 558 |
| Msa0164290 | AT2G42170.3 | 78.012 | 332 | 70 | 1 | 46 | 377 | 1 | 329 | 0.0 | 558 |
| Msa0164290 | AT2G42170.4 | 77.885 | 312 | 66 | 1 | 46 | 357 | 1 | 309 | 0.0 | 521 |
| Msa0164290 | AT2G42170.2 | 77.885 | 312 | 66 | 1 | 46 | 357 | 1 | 309 | 0.0 | 521 |
| Msa0164290 | AT2G42170.5 | 78.319 | 226 | 46 | 1 | 152 | 377 | 9 | 231 | 1.47e-131 | 376 |
| Msa0164290 | AT3G27000.1 | 44.327 | 379 | 197 | 4 | 10 | 374 | 7 | 385 | 3.56e-122 | 358 |
| Msa0164290 | AT1G18450.1 | 37.246 | 443 | 208 | 9 | 1 | 376 | 1 | 440 | 2.78e-95 | 291 |
| Msa0164290 | AT1G13180.1 | 34.615 | 416 | 212 | 11 | 10 | 372 | 9 | 417 | 8.40e-72 | 231 |
| Msa0164290 | AT3G60830.1 | 37.731 | 379 | 212 | 9 | 7 | 377 | 1 | 363 | 1.91e-67 | 217 |
| Msa0164290 | AT3G33520.1 | 30.166 | 421 | 236 | 7 | 10 | 377 | 5 | 420 | 4.30e-58 | 195 |
| Msa0164290 | AT5G56180.3 | 31.690 | 284 | 169 | 9 | 91 | 358 | 50 | 324 | 2.60e-35 | 132 |
| Msa0164290 | AT5G56180.1 | 31.690 | 284 | 169 | 9 | 91 | 358 | 182 | 456 | 1.57e-34 | 133 |
| Msa0164290 | AT3G12380.2 | 29.572 | 257 | 158 | 6 | 9 | 245 | 21 | 274 | 3.23e-25 | 107 |
| Msa0164290 | AT3G12380.2 | 33.793 | 145 | 92 | 2 | 228 | 368 | 572 | 716 | 2.68e-16 | 81.3 |
| Msa0164290 | AT3G12380.1 | 29.412 | 255 | 155 | 6 | 9 | 245 | 21 | 268 | 1.56e-24 | 105 |
| Msa0164290 | AT3G12380.1 | 33.793 | 145 | 92 | 2 | 228 | 368 | 566 | 710 | 2.67e-16 | 81.3 |
| Msa0164290 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.26e-23 | 95.1 |
| Msa0164290 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.26e-23 | 95.1 |
| Msa0164290 | AT5G56180.2 | 32.673 | 202 | 113 | 8 | 91 | 281 | 182 | 371 | 1.29e-19 | 89.7 |
| Msa0164290 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 2.93e-12 | 64.7 |
Find 117 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTCTTGTTTGTGATAA+TGG | 0.154159 | 1_4:+43440785 | Msa0164290:CDS |
| ATAGGTATTGTTCTTGATTC+TGG | 0.193204 | 1_4:+43442658 | Msa0164290:intron |
| CTGGATTGGAGGCTCCATTT+TGG | 0.220933 | 1_4:+43443230 | Msa0164290:CDS |
| AGCATGGAATTGTTAGTAAC+TGG | 0.268065 | 1_4:+43441584 | Msa0164290:CDS |
| ATAGCTCTTCTATAATAAAA+TGG | 0.300250 | 1_4:-43444019 | None:intergenic |
| TGTTAGTAACTGGGATGATA+TGG | 0.302766 | 1_4:+43441594 | Msa0164290:CDS |
| CATTCATTTCGGAGATTCTA+AGG | 0.312867 | 1_4:+43440376 | Msa0164290:five_prime_UTR |
| GTGATGAAGCTCAATCAAAA+AGG | 0.325898 | 1_4:+43441533 | Msa0164290:CDS |
| GTTCACAGGAAATGCTTCTA+AGG | 0.326765 | 1_4:+43443837 | Msa0164290:CDS |
| AGAAGAACTGGATGTTCTTC+AGG | 0.338859 | 1_4:-43441661 | None:intergenic |
| ACCAAGTAGCATGAAAATTA+AGG | 0.346175 | 1_4:+43443176 | Msa0164290:CDS |
| AACAGCTGAGCTCGTCTTTG+AGG | 0.347903 | 1_4:-43442899 | None:intergenic |
| CTAACAATTCCATGCTCAAT+TGG | 0.355777 | 1_4:-43441577 | None:intergenic |
| ACACGTTGTTTCATTCATTT+CGG | 0.361743 | 1_4:+43440365 | Msa0164290:five_prime_UTR |
| TAATTGCAGGCTGGATTTGC+CGG | 0.363107 | 1_4:+43441415 | Msa0164290:intron |
| TCCACACGCAATCCTGCGTT+TGG | 0.371608 | 1_4:+43442726 | Msa0164290:CDS |
| CGTGGACGACCTACAATACT+AGG | 0.377152 | 1_4:-43441463 | None:intergenic |
| GGTGCTGAGGGAAGCCAAAA+TGG | 0.378341 | 1_4:-43443244 | None:intergenic |
| CACTGGTGTGATGGTTGGTA+TGG | 0.381213 | 1_4:+43441489 | Msa0164290:CDS |
| GTATTGTGACTGATTTGGTT+TGG | 0.387207 | 1_4:+43444042 | Msa0164290:three_prime_UTR |
| CTTGTTTGTGATAATGGAAC+TGG | 0.393561 | 1_4:+43440791 | Msa0164290:CDS |
| AGCTATGTATGTTGCCATTC+AGG | 0.402911 | 1_4:+43441759 | Msa0164290:CDS |
| ATCCTGCGTTTGGATCTTGC+AGG | 0.408141 | 1_4:+43442736 | Msa0164290:CDS |
| GATATTAGAAAAGATCTCTA+TGG | 0.413540 | 1_4:+43443075 | Msa0164290:CDS |
| CGATTAGCCTTTGGATTAAG+TGG | 0.413728 | 1_4:-43441694 | None:intergenic |
| AGGAAGTATAGTGTCTGGAT+TGG | 0.419464 | 1_4:+43443216 | Msa0164290:CDS |
| GATGGCTGGAAGAGTACTTC+AGG | 0.422610 | 1_4:-43442985 | None:intergenic |
| ATCTATCTAAATCGAATTTG+AGG | 0.426159 | 1_4:+43440202 | Msa0164290:five_prime_UTR |
| TGTTCCCCGGCATTGCTGAT+AGG | 0.428746 | 1_4:+43443127 | Msa0164290:CDS |
| CGCCCTTGGTGCATCATCTC+CGG | 0.435198 | 1_4:-43441434 | None:intergenic |
| TATGCTAGTGGCCGTACAAC+CGG | 0.439242 | 1_4:+43441796 | Msa0164290:CDS |
| GCTATGTATTGTGACTGATT+TGG | 0.445766 | 1_4:+43444037 | Msa0164290:three_prime_UTR |
| TTCCCTCAGCACCTTCCAAC+AGG | 0.446388 | 1_4:+43443254 | Msa0164290:CDS |
| TGAGGTACCCGCGTTGTTGT+TGG | 0.447988 | 1_4:-43440272 | None:intergenic |
| CTCTTCCAGCCATCCATGAT+TGG | 0.448268 | 1_4:+43442994 | Msa0164290:CDS |
| ATACATAGCTGGAGCATTGA+AGG | 0.451630 | 1_4:-43441746 | None:intergenic |
| GTCTCTCACGATTTCGCGCT+CGG | 0.452168 | 1_4:-43442824 | None:intergenic |
| AAGTATAGTGTCTGGATTGG+AGG | 0.453134 | 1_4:+43443219 | Msa0164290:CDS |
| AGGGCATATCCTTCATAGAT+AGG | 0.454246 | 1_4:-43442703 | None:intergenic |
| GATGGACAGGTGATCACAAT+AGG | 0.458268 | 1_4:+43442943 | Msa0164290:CDS |
| AAGGCTGAATATGATGAATC+AGG | 0.458861 | 1_4:+43443804 | Msa0164290:CDS |
| AAGCGAAAGCACGGCCTGAA+TGG | 0.462189 | 1_4:-43441773 | None:intergenic |
| ATTGTGATCACCTGTCCATC+AGG | 0.462569 | 1_4:-43442940 | None:intergenic |
| GATGAGATAGTGGTATGTAT+TGG | 0.465957 | 1_4:+43444070 | Msa0164290:three_prime_UTR |
| CTCATCCTATCAGCAATGCC+GGG | 0.468005 | 1_4:-43443132 | None:intergenic |
| GGTGCTTCAGTGAGAAGAAC+TGG | 0.478493 | 1_4:-43441673 | None:intergenic |
| CTTCTATATGTTGGGATGAG+AGG | 0.479144 | 1_4:+43443959 | Msa0164290:three_prime_UTR |
| CATTTCCTGTGAACAATTGA+AGG | 0.480733 | 1_4:-43443828 | None:intergenic |
| TAACAATTCCATGCTCAATT+GGG | 0.481241 | 1_4:-43441576 | None:intergenic |
| TTCATAATCAAGAGCAATGT+AGG | 0.483299 | 1_4:-43442863 | None:intergenic |
| ATTGTTCTTGATTCTGGAGA+TGG | 0.486571 | 1_4:+43442664 | Msa0164290:CDS |
| GCGGTGTTCCCTAGTATTGT+AGG | 0.487449 | 1_4:+43441454 | Msa0164290:CDS |
| CAGAGAGGAAGTATAGTGTC+TGG | 0.492085 | 1_4:+43443211 | Msa0164290:CDS |
| AACGCAGGATTGCGTGTGGA+AGG | 0.498417 | 1_4:-43442723 | None:intergenic |
| AGGAGCTTCCATACCAATCA+TGG | 0.501773 | 1_4:-43443007 | None:intergenic |
| GGGATGATATGGAAAAGATC+TGG | 0.506672 | 1_4:+43441605 | Msa0164290:CDS |
| AAGAATCTTTACCGGTTGTA+CGG | 0.508172 | 1_4:-43441807 | None:intergenic |
| GTGCTTTCGCTTTATGCTAG+TGG | 0.509701 | 1_4:+43441784 | Msa0164290:CDS |
| CTATGAGTTGCCTGATGGAC+AGG | 0.511657 | 1_4:+43442930 | Msa0164290:CDS |
| ACTCATCCTATCAGCAATGC+CGG | 0.520050 | 1_4:-43443133 | None:intergenic |
| GATTTCGCGCTCGGCTGTTG+TGG | 0.522921 | 1_4:-43442815 | None:intergenic |
| CAGACACTATACTTCCTCTC+TGG | 0.523127 | 1_4:-43443210 | None:intergenic |
| CACACAGTTCCTATCTATGA+AGG | 0.525553 | 1_4:+43442694 | Msa0164290:CDS |
| CATTGCTGATAGGATGAGTA+AGG | 0.527862 | 1_4:+43443137 | Msa0164290:CDS |
| CCATACCAATCATGGATGGC+TGG | 0.531059 | 1_4:-43442999 | None:intergenic |
| CCAGCCATCCATGATTGGTA+TGG | 0.540901 | 1_4:+43442999 | Msa0164290:CDS |
| CAGGCCCTTCAATTGTTCAC+AGG | 0.542188 | 1_4:+43443823 | Msa0164290:CDS |
| ATGAAAATCTTAACCGAGCG+TGG | 0.549893 | 1_4:+43442781 | Msa0164290:CDS |
| ATACCTGTTGGAAGGTGCTG+AGG | 0.550602 | 1_4:-43443257 | None:intergenic |
| GATGGTTGGTATGGGACAAA+AGG | 0.552916 | 1_4:+43441498 | Msa0164290:CDS |
| TGAATGGCAACATACATAGC+TGG | 0.554069 | 1_4:-43441757 | None:intergenic |
| ATACTAGGGAACACCGCCCT+TGG | 0.561168 | 1_4:-43441448 | None:intergenic |
| TATGTTGTTTCATGTATACC+AGG | 0.569084 | 1_4:-43443027 | None:intergenic |
| CTAAAGTACCCAATTGAGCA+TGG | 0.570119 | 1_4:+43441568 | Msa0164290:CDS |
| TCCACGCCACACTGGTGTGA+TGG | 0.574722 | 1_4:+43441480 | Msa0164290:CDS |
| ATGATTGGTATGGAAGCTCC+TGG | 0.576789 | 1_4:+43443009 | Msa0164290:CDS |
| ACGCAGGATTGCGTGTGGAA+GGG | 0.581046 | 1_4:-43442722 | None:intergenic |
| CGCCACACTGGTGTGATGGT+TGG | 0.586183 | 1_4:+43441484 | Msa0164290:CDS |
| TACCTGTTGGAAGGTGCTGA+GGG | 0.587542 | 1_4:-43443256 | None:intergenic |
| ACCATCACACCAGTGTGGCG+TGG | 0.593745 | 1_4:-43441481 | None:intergenic |
| TATATATTCGATAATATAGA+CGG | 0.596384 | 1_4:+43440174 | None:intergenic |
| GTTCCATTATCACAAACAAG+AGG | 0.600317 | 1_4:-43440788 | None:intergenic |
| TGCCGGAGATGATGCACCAA+GGG | 0.600516 | 1_4:+43441432 | Msa0164290:CDS |
| AAGAGCTATGAGTTGCCTGA+TGG | 0.602442 | 1_4:+43442925 | Msa0164290:CDS |
| ACACTATACTTCCTCTCTGG+TGG | 0.604108 | 1_4:-43443207 | None:intergenic |
| ATTTCCTGTGAACAATTGAA+GGG | 0.604151 | 1_4:-43443827 | None:intergenic |
| TAATGGAACTGGAATGGTCA+AGG | 0.604703 | 1_4:+43440802 | Msa0164290:CDS |
| TTTAAAACCAACAACAACGC+GGG | 0.615333 | 1_4:+43440265 | Msa0164290:five_prime_UTR |
| ACTAGCATAAAGCGAAAGCA+CGG | 0.615597 | 1_4:-43441782 | None:intergenic |
| TTCAGGACAACGGAAACGCT+CGG | 0.617162 | 1_4:-43442968 | None:intergenic |
| TATGGAAACATCGTATTGAG+TGG | 0.620418 | 1_4:+43443093 | Msa0164290:CDS |
| GGTGGTACGACTATGTTCCC+CGG | 0.621683 | 1_4:+43443114 | Msa0164290:CDS |
| GGACAAAAGGATGCATATGT+TGG | 0.623959 | 1_4:+43441511 | Msa0164290:CDS |
| GAGTAAGGAGATCACAGCAT+TGG | 0.625910 | 1_4:+43443152 | Msa0164290:CDS |
| TTGTGATAATGGAACTGGAA+TGG | 0.628921 | 1_4:+43440796 | Msa0164290:CDS |
| GTGCAGTAATCAATAAACAA+TGG | 0.630705 | 1_4:+43440745 | Msa0164290:intron |
| CGGAGATGATGCACCAAGGG+CGG | 0.631181 | 1_4:+43441435 | Msa0164290:CDS |
| GCATGGAATTGTTAGTAACT+GGG | 0.633326 | 1_4:+43441585 | Msa0164290:CDS |
| CGAAATCGTGAGAGACGTGA+AGG | 0.635127 | 1_4:+43442831 | Msa0164290:CDS |
| CATGCACTATACCTGTTGGA+AGG | 0.635341 | 1_4:-43443265 | None:intergenic |
| GCTTCCATACCAATCATGGA+TGG | 0.638459 | 1_4:-43443003 | None:intergenic |
| TCCAAACGCAGGATTGCGTG+TGG | 0.640726 | 1_4:-43442727 | None:intergenic |
| ACTGGTGTGATGGTTGGTAT+GGG | 0.640914 | 1_4:+43441490 | Msa0164290:CDS |
| GGTGAAAGAGTATCCACGCT+CGG | 0.643494 | 1_4:-43442794 | None:intergenic |
| TGAAGCACCACTTAATCCAA+AGG | 0.643775 | 1_4:+43441687 | Msa0164290:CDS |
| AAGTAGCATGAAAATTAAGG+TGG | 0.656638 | 1_4:+43443179 | Msa0164290:CDS |
| GTGGACGACCTACAATACTA+GGG | 0.661189 | 1_4:-43441462 | None:intergenic |
| TTGCCGGAGATGATGCACCA+AGG | 0.662970 | 1_4:+43441431 | Msa0164290:CDS |
| GGAAACATCGTATTGAGTGG+TGG | 0.669837 | 1_4:+43443096 | Msa0164290:CDS |
| TCATCCTATCAGCAATGCCG+GGG | 0.674218 | 1_4:-43443131 | None:intergenic |
| AATGCAGATGTGGATTGCAA+AGG | 0.677558 | 1_4:+43443785 | Msa0164290:intron |
| GTAGGTCGTCCACGCCACAC+TGG | 0.686011 | 1_4:+43441472 | Msa0164290:CDS |
| GACCTGCAAGATCCAAACGC+AGG | 0.690015 | 1_4:-43442738 | None:intergenic |
| GGAAGAGTACTTCAGGACAA+CGG | 0.707065 | 1_4:-43442978 | None:intergenic |
| AGGTGGTTGCACCACCAGAG+AGG | 0.708305 | 1_4:+43443196 | Msa0164290:CDS |
| CTTCATAGATAGGAACTGTG+TGG | 0.711555 | 1_4:-43442693 | None:intergenic |
| TACCAACCATCACACCAGTG+TGG | 0.726907 | 1_4:-43441486 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAATTTTGTAATGAAA+TGG | + | chr1_4:43440613-43440632 | Msa0164290:intron | 10.0% |
| !! | TTATGATAATAATATAAGTT+TGG | + | chr1_4:43440715-43440734 | Msa0164290:intron | 10.0% |
| !!! | TTATTTTCTTTTCATTTTAA+AGG | - | chr1_4:43443344-43443363 | None:intergenic | 10.0% |
| !! | AAATGGTAAAATAAAAAAAA+AGG | - | chr1_4:43443918-43443937 | None:intergenic | 10.0% |
| !!! | TTTTATAATGTTTTAAATCG+TGG | - | chr1_4:43441083-43441102 | None:intergenic | 15.0% |
| !! | ATGAAATTGAATGAAAAATA+CGG | - | chr1_4:43442387-43442406 | None:intergenic | 15.0% |
| !! | CACATTAACATTATAAAAAA+TGG | - | chr1_4:43443935-43443954 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAAGGAAAGTTAG+TGG | - | chr1_4:43440252-43440271 | None:intergenic | 20.0% |
| !! | TAATGAGTTAGATAGAAATA+TGG | + | chr1_4:43441129-43441148 | Msa0164290:intron | 20.0% |
| !! | ATATCTTTACAATTCTCAAA+AGG | - | chr1_4:43441849-43441868 | None:intergenic | 20.0% |
| !! | GTAAAGATATATGTGAAAAT+TGG | + | chr1_4:43441859-43441878 | Msa0164290:intron | 20.0% |
| !!! | ATATGTTTGAAATGATAGAA+AGG | + | chr1_4:43442150-43442169 | Msa0164290:intron | 20.0% |
| !!! | TTTTTGGTAATTTGATAGAA+TGG | - | chr1_4:43442480-43442499 | None:intergenic | 20.0% |
| !! | AACTTTAAATTTCCAAACAA+TGG | + | chr1_4:43442510-43442529 | Msa0164290:intron | 20.0% |
| !! | AAAATTACAAAACCATTGTT+TGG | - | chr1_4:43442525-43442544 | None:intergenic | 20.0% |
| !! | GAAAAGAAAATAATGCATAA+AGG | + | chr1_4:43443351-43443370 | Msa0164290:intron | 20.0% |
| !! | ACTAAGAAAATAATGCATAA+AGG | + | chr1_4:43443374-43443393 | Msa0164290:intron | 20.0% |
| !!! | TTAAAATACCCTTTTTAATG+TGG | + | chr1_4:43443694-43443713 | Msa0164290:intron | 20.0% |
| !! | CTAAGAAATATCATAAAAAC+TGG | + | chr1_4:43443876-43443895 | Msa0164290:three_prime_UTR | 20.0% |
| !! | ATAGCTCTTCTATAATAAAA+TGG | - | chr1_4:43444022-43444041 | None:intergenic | 20.0% |
| ! | ATCTATCTAAATCGAATTTG+AGG | + | chr1_4:43440202-43440221 | Msa0164290:five_prime_UTR | 25.0% |
| !!! | GTTGTTGTTGGTTTTAAAAA+AGG | - | chr1_4:43440263-43440282 | None:intergenic | 25.0% |
| ! | ATGATGATAGAAAATGAGAA+AGG | - | chr1_4:43440456-43440475 | None:intergenic | 25.0% |
| ! | CTAATCAAATAAGATCAACA+AGG | - | chr1_4:43440843-43440862 | None:intergenic | 25.0% |
| !! | CTTGTTGATCTTATTTGATT+AGG | + | chr1_4:43440841-43440860 | Msa0164290:intron | 25.0% |
| !! | GATCTTATTTGATTAGGTAA+AGG | + | chr1_4:43440847-43440866 | Msa0164290:intron | 25.0% |
| ! | CAATTGTATAACACATATCA+AGG | - | chr1_4:43441262-43441281 | None:intergenic | 25.0% |
| !! | TACCACAATTTAACACATTT+TGG | + | chr1_4:43441340-43441359 | Msa0164290:intron | 25.0% |
| ! | AACCAAAATGTGTTAAATTG+TGG | - | chr1_4:43441345-43441364 | None:intergenic | 25.0% |
| !! | GATGTGTTTTATATAATTGC+AGG | + | chr1_4:43441402-43441421 | Msa0164290:intron | 25.0% |
| !!! | TTTTTATCGAAGTACTTGTA+TGG | - | chr1_4:43441946-43441965 | None:intergenic | 25.0% |
| ! | AAATTCTAATGAAATACGAG+TGG | - | chr1_4:43442023-43442042 | None:intergenic | 25.0% |
| ! | AGATGATCTACAAATGAATA+TGG | + | chr1_4:43442045-43442064 | Msa0164290:intron | 25.0% |
| ! | TCTATCAAATTACCAAAAAC+TGG | + | chr1_4:43442481-43442500 | Msa0164290:intron | 25.0% |
| !! | AAAGTTTTCATTCCAGTTTT+TGG | - | chr1_4:43442496-43442515 | None:intergenic | 25.0% |
| ! | GATATTAGAAAAGATCTCTA+TGG | + | chr1_4:43443075-43443094 | Msa0164290:CDS | 25.0% |
| !! | TAATAGTCAATAAGCTTGTT+TGG | + | chr1_4:43443408-43443427 | Msa0164290:intron | 25.0% |
| ! | GTTTATTTGAGCTTATCTAT+AGG | + | chr1_4:43443435-43443454 | Msa0164290:intron | 25.0% |
| !!! | GGGTATTTTAAACAAATGTA+TGG | - | chr1_4:43443685-43443704 | None:intergenic | 25.0% |
| ! | CTCTTAAACCACATTAAAAA+GGG | - | chr1_4:43443705-43443724 | None:intergenic | 25.0% |
| ! | GAAAACATATCATCAATACA+TGG | - | chr1_4:43443759-43443778 | None:intergenic | 25.0% |
| ! | AATATCATAAAAACTGGTTG+AGG | + | chr1_4:43443882-43443901 | Msa0164290:three_prime_UTR | 25.0% |
| !! | ATGTGTTTTCTTCTATATGT+TGG | + | chr1_4:43443950-43443969 | Msa0164290:three_prime_UTR | 25.0% |
| !! | TGTGTTTTCTTCTATATGTT+GGG | + | chr1_4:43443951-43443970 | Msa0164290:three_prime_UTR | 25.0% |
| !!! | TTTTAAAACCAACAACAACG+CGG | + | chr1_4:43440264-43440283 | Msa0164290:five_prime_UTR | 30.0% |
| ! | TTTAACGAACATGTCTTTTG+TGG | - | chr1_4:43440299-43440318 | None:intergenic | 30.0% |
| ! | ACACGTTGTTTCATTCATTT+CGG | + | chr1_4:43440365-43440384 | Msa0164290:five_prime_UTR | 30.0% |
| ! | TAGATCTCATTTTCTACGTT+TGG | + | chr1_4:43440647-43440666 | Msa0164290:intron | 30.0% |
| !! | TCATTTTCTACGTTTGGAAT+TGG | + | chr1_4:43440653-43440672 | Msa0164290:intron | 30.0% |
| GTGCAGTAATCAATAAACAA+TGG | + | chr1_4:43440745-43440764 | Msa0164290:intron | 30.0% | |
| TCAAATAAGATCAACAAGGT+TGG | - | chr1_4:43440839-43440858 | None:intergenic | 30.0% | |
| !! | AGGTAAAGGTTTTTCGAAAA+AGG | + | chr1_4:43440861-43440880 | Msa0164290:intron | 30.0% |
| TGGCTTATGATATAACATCA+TGG | + | chr1_4:43441149-43441168 | Msa0164290:intron | 30.0% | |
| TCTTGTAATCTAGTAGTACA+TGG | + | chr1_4:43441236-43441255 | Msa0164290:intron | 30.0% | |
| ! | TTTTGTAATCAAGCACTACT+TGG | + | chr1_4:43441375-43441394 | Msa0164290:intron | 30.0% |
| ! | TGTTTTATATAATTGCAGGC+TGG | + | chr1_4:43441406-43441425 | Msa0164290:intron | 30.0% |
| TGATGAAGCTCAATCAAAAA+GGG | + | chr1_4:43441534-43441553 | Msa0164290:CDS | 30.0% | |
| TAACAATTCCATGCTCAATT+GGG | - | chr1_4:43441579-43441598 | None:intergenic | 30.0% | |
| CATAGAAGAAGAATCTTTAC+CGG | - | chr1_4:43441818-43441837 | None:intergenic | 30.0% | |
| ! | ATGTATGAATATGAAGCACT+TGG | + | chr1_4:43442204-43442223 | Msa0164290:intron | 30.0% |
| ! | ATAGAATGGTGCTGAATTAT+AGG | - | chr1_4:43442466-43442485 | None:intergenic | 30.0% |
| ! | ATAGGTATTGTTCTTGATTC+TGG | + | chr1_4:43442658-43442677 | Msa0164290:intron | 30.0% |
| TTCATAATCAAGAGCAATGT+AGG | - | chr1_4:43442866-43442885 | None:intergenic | 30.0% | |
| !! | TATGTTGTTTCATGTATACC+AGG | - | chr1_4:43443030-43443049 | None:intergenic | 30.0% |
| ACCAAGTAGCATGAAAATTA+AGG | + | chr1_4:43443176-43443195 | Msa0164290:CDS | 30.0% | |
| ! | ACCTTAATTTTCATGCTACT+TGG | - | chr1_4:43443180-43443199 | None:intergenic | 30.0% |
| AAGTAGCATGAAAATTAAGG+TGG | + | chr1_4:43443179-43443198 | Msa0164290:CDS | 30.0% | |
| TACATGTGAATGAAACTTGT+AGG | + | chr1_4:43443297-43443316 | Msa0164290:intron | 30.0% | |
| ACATGTGAATGAAACTTGTA+GGG | + | chr1_4:43443298-43443317 | Msa0164290:intron | 30.0% | |
| TGTTTACACATAGCACATAT+AGG | + | chr1_4:43443619-43443638 | Msa0164290:intron | 30.0% | |
| GATAAGCACTTATGCTATAA+GGG | + | chr1_4:43443641-43443660 | Msa0164290:intron | 30.0% | |
| CCTCTTAAACCACATTAAAA+AGG | - | chr1_4:43443706-43443725 | None:intergenic | 30.0% | |
| ! | CCTTTTTAATGTGGTTTAAG+AGG | + | chr1_4:43443703-43443722 | Msa0164290:intron | 30.0% |
| ! | TTTCTTTTCTAATGCAGATG+TGG | + | chr1_4:43443775-43443794 | Msa0164290:intron | 30.0% |
| ATTTCCTGTGAACAATTGAA+GGG | - | chr1_4:43443830-43443849 | None:intergenic | 30.0% | |
| !! | TTTGGATTTTGATGAGATAG+TGG | + | chr1_4:43444060-43444079 | Msa0164290:three_prime_UTR | 30.0% |
| ! | TTTAAAACCAACAACAACGC+GGG | + | chr1_4:43440265-43440284 | Msa0164290:five_prime_UTR | 35.0% |
| CATTCATTTCGGAGATTCTA+AGG | + | chr1_4:43440376-43440395 | Msa0164290:five_prime_UTR | 35.0% | |
| ! | CAACCTCTTGTTTGTGATAA+TGG | + | chr1_4:43440785-43440804 | Msa0164290:CDS | 35.0% |
| GTTCCATTATCACAAACAAG+AGG | - | chr1_4:43440791-43440810 | None:intergenic | 35.0% | |
| !! | CTTGTTTGTGATAATGGAAC+TGG | + | chr1_4:43440791-43440810 | Msa0164290:CDS | 35.0% |
| !! | TTGTGATAATGGAACTGGAA+TGG | + | chr1_4:43440796-43440815 | Msa0164290:CDS | 35.0% |
| ATAAGATCAACAAGGTTGGA+TGG | - | chr1_4:43440835-43440854 | None:intergenic | 35.0% | |
| GTGATGAAGCTCAATCAAAA+AGG | + | chr1_4:43441533-43441552 | Msa0164290:CDS | 35.0% | |
| GATGAAGCTCAATCAAAAAG+GGG | + | chr1_4:43441535-43441554 | Msa0164290:CDS | 35.0% | |
| CTAACAATTCCATGCTCAAT+TGG | - | chr1_4:43441580-43441599 | None:intergenic | 35.0% | |
| AGCATGGAATTGTTAGTAAC+TGG | + | chr1_4:43441584-43441603 | Msa0164290:CDS | 35.0% | |
| GCATGGAATTGTTAGTAACT+GGG | + | chr1_4:43441585-43441604 | Msa0164290:CDS | 35.0% | |
| TGTTAGTAACTGGGATGATA+TGG | + | chr1_4:43441594-43441613 | Msa0164290:CDS | 35.0% | |
| !!! | ATTTTCTCACGATTAGCCTT+TGG | - | chr1_4:43441706-43441725 | None:intergenic | 35.0% |
| ! | AAGAATCTTTACCGGTTGTA+CGG | - | chr1_4:43441810-43441829 | None:intergenic | 35.0% |
| !! | CGAAGTACTTGTATGGATTT+TGG | - | chr1_4:43441939-43441958 | None:intergenic | 35.0% |
| TGTATGACAGCATCAAATAC+TGG | - | chr1_4:43441974-43441993 | None:intergenic | 35.0% | |
| ! | ATATGGATTGTACAACTTGC+AGG | + | chr1_4:43442062-43442081 | Msa0164290:intron | 35.0% |
| TGCAGGAATTACTAATGTCA+TGG | + | chr1_4:43442079-43442098 | Msa0164290:intron | 35.0% | |
| ! | AGTTTTCTTCCTGCAATATG+TGG | + | chr1_4:43442418-43442437 | Msa0164290:intron | 35.0% |
| ! | CGTAGTTCACATCTTGTTAT+AGG | + | chr1_4:43442640-43442659 | Msa0164290:intron | 35.0% |
| ! | ATTGTTCTTGATTCTGGAGA+TGG | + | chr1_4:43442664-43442683 | Msa0164290:CDS | 35.0% |
| ! | CTCGGTTAAGATTTTCATGA+GGG | - | chr1_4:43442779-43442798 | None:intergenic | 35.0% |
| TATGGAAACATCGTATTGAG+TGG | + | chr1_4:43443093-43443112 | Msa0164290:CDS | 35.0% | |
| ! | GTCAATAAGCTTGTTTGGTT+TGG | + | chr1_4:43443413-43443432 | Msa0164290:intron | 35.0% |
| GGATAAGCACTTATGCTATA+AGG | + | chr1_4:43443640-43443659 | Msa0164290:intron | 35.0% | |
| AAGGCTGAATATGATGAATC+AGG | + | chr1_4:43443804-43443823 | Msa0164290:CDS | 35.0% | |
| CATTTCCTGTGAACAATTGA+AGG | - | chr1_4:43443831-43443850 | None:intergenic | 35.0% | |
| GCTATGTATTGTGACTGATT+TGG | + | chr1_4:43444037-43444056 | Msa0164290:three_prime_UTR | 35.0% | |
| !! | GTATTGTGACTGATTTGGTT+TGG | + | chr1_4:43444042-43444061 | Msa0164290:three_prime_UTR | 35.0% |
| ! | GATGAGATAGTGGTATGTAT+TGG | + | chr1_4:43444070-43444089 | Msa0164290:three_prime_UTR | 35.0% |
| ! | GAACATGTCTTTTGTGGTTG+AGG | - | chr1_4:43440293-43440312 | None:intergenic | 40.0% |
| TAATGGAACTGGAATGGTCA+AGG | + | chr1_4:43440802-43440821 | Msa0164290:CDS | 40.0% | |
| GGACAAAAGGATGCATATGT+TGG | + | chr1_4:43441511-43441530 | Msa0164290:CDS | 40.0% | |
| ! | CTAAAGTACCCAATTGAGCA+TGG | + | chr1_4:43441568-43441587 | Msa0164290:CDS | 40.0% |
| GGGATGATATGGAAAAGATC+TGG | + | chr1_4:43441605-43441624 | Msa0164290:CDS | 40.0% | |
| AGAAGAACTGGATGTTCTTC+AGG | - | chr1_4:43441664-43441683 | None:intergenic | 40.0% | |
| ! | TGAAGCACCACTTAATCCAA+AGG | + | chr1_4:43441687-43441706 | Msa0164290:CDS | 40.0% |
| !! | CGATTAGCCTTTGGATTAAG+TGG | - | chr1_4:43441697-43441716 | None:intergenic | 40.0% |
| !! | ATACATAGCTGGAGCATTGA+AGG | - | chr1_4:43441749-43441768 | None:intergenic | 40.0% |
| TGAATGGCAACATACATAGC+TGG | - | chr1_4:43441760-43441779 | None:intergenic | 40.0% | |
| AGCTATGTATGTTGCCATTC+AGG | + | chr1_4:43441759-43441778 | Msa0164290:CDS | 40.0% | |
| ACTAGCATAAAGCGAAAGCA+CGG | - | chr1_4:43441785-43441804 | None:intergenic | 40.0% | |
| ATTCAAGACCCTGGATCATT+AGG | + | chr1_4:43441885-43441904 | Msa0164290:intron | 40.0% | |
| TTCAAGACCCTGGATCATTA+GGG | + | chr1_4:43441886-43441905 | Msa0164290:intron | 40.0% | |
| CACTGTGTCAATGTCATATG+TGG | - | chr1_4:43442243-43442262 | None:intergenic | 40.0% | |
| CAATATGTGGTCATGGATGA+AGG | + | chr1_4:43442431-43442450 | Msa0164290:intron | 40.0% | |
| TGATATCTAAGCGCAGCTTA+AGG | + | chr1_4:43442563-43442582 | Msa0164290:intron | 40.0% | |
| CTTCATAGATAGGAACTGTG+TGG | - | chr1_4:43442696-43442715 | None:intergenic | 40.0% | |
| CACACAGTTCCTATCTATGA+AGG | + | chr1_4:43442694-43442713 | Msa0164290:CDS | 40.0% | |
| AGGGCATATCCTTCATAGAT+AGG | - | chr1_4:43442706-43442725 | None:intergenic | 40.0% | |
| ! | GCTCGGTTAAGATTTTCATG+AGG | - | chr1_4:43442780-43442799 | None:intergenic | 40.0% |
| ATGAAAATCTTAACCGAGCG+TGG | + | chr1_4:43442781-43442800 | Msa0164290:CDS | 40.0% | |
| CATTGCTGATAGGATGAGTA+AGG | + | chr1_4:43443137-43443156 | Msa0164290:CDS | 40.0% | |
| ! | AGGAAGTATAGTGTCTGGAT+TGG | + | chr1_4:43443216-43443235 | Msa0164290:CDS | 40.0% |
| ! | AAGTATAGTGTCTGGATTGG+AGG | + | chr1_4:43443219-43443238 | Msa0164290:CDS | 40.0% |
| AAGTCATGCACTATACCTGT+TGG | - | chr1_4:43443272-43443291 | None:intergenic | 40.0% | |
| ! | AATGCAGATGTGGATTGCAA+AGG | + | chr1_4:43443785-43443804 | Msa0164290:intron | 40.0% |
| GTTCACAGGAAATGCTTCTA+AGG | + | chr1_4:43443837-43443856 | Msa0164290:CDS | 40.0% | |
| CTTCTATATGTTGGGATGAG+AGG | + | chr1_4:43443959-43443978 | Msa0164290:three_prime_UTR | 40.0% | |
| GAACTGGAATGGTCAAGGTA+TGG | + | chr1_4:43440807-43440826 | Msa0164290:intron | 45.0% | |
| ATACTATGATGTCGCTGTCG+CGG | - | chr1_4:43440940-43440959 | None:intergenic | 45.0% | |
| ATCACAAGTGACCGCAATTC+TGG | + | chr1_4:43440978-43440997 | Msa0164290:intron | 45.0% | |
| TTCATGTAGCTAACCCCACT+TGG | + | chr1_4:43441182-43441201 | Msa0164290:intron | 45.0% | |
| TAATTGCAGGCTGGATTTGC+CGG | + | chr1_4:43441415-43441434 | Msa0164290:intron | 45.0% | |
| GTGGACGACCTACAATACTA+GGG | - | chr1_4:43441465-43441484 | None:intergenic | 45.0% | |
| ! | ACTGGTGTGATGGTTGGTAT+GGG | + | chr1_4:43441490-43441509 | Msa0164290:CDS | 45.0% |
| ! | GATGGTTGGTATGGGACAAA+AGG | + | chr1_4:43441498-43441517 | Msa0164290:CDS | 45.0% |
| GTGCTTTCGCTTTATGCTAG+TGG | + | chr1_4:43441784-43441803 | Msa0164290:CDS | 45.0% | |
| AATTGGCGTATTCAAGACCC+TGG | + | chr1_4:43441876-43441895 | Msa0164290:intron | 45.0% | |
| GGAATGCAGTGAAGTGAAAC+AGG | + | chr1_4:43442171-43442190 | Msa0164290:intron | 45.0% | |
| ATACGGACACATCAGATCGA+CGG | - | chr1_4:43442370-43442389 | None:intergenic | 45.0% | |
| CTTCCTGCAATATGTGGTCA+TGG | + | chr1_4:43442424-43442443 | Msa0164290:intron | 45.0% | |
| CATCCATGACCACATATTGC+AGG | - | chr1_4:43442430-43442449 | None:intergenic | 45.0% | |
| TAAGCGCAGCTTAAGGAACT+TGG | + | chr1_4:43442570-43442589 | Msa0164290:intron | 45.0% | |
| AAGAGCTATGAGTTGCCTGA+TGG | + | chr1_4:43442925-43442944 | Msa0164290:CDS | 45.0% | |
| ATTGTGATCACCTGTCCATC+AGG | - | chr1_4:43442943-43442962 | None:intergenic | 45.0% | |
| GATGGACAGGTGATCACAAT+AGG | + | chr1_4:43442943-43442962 | Msa0164290:CDS | 45.0% | |
| !! | GGAAGAGTACTTCAGGACAA+CGG | - | chr1_4:43442981-43443000 | None:intergenic | 45.0% |
| GCTTCCATACCAATCATGGA+TGG | - | chr1_4:43443006-43443025 | None:intergenic | 45.0% | |
| AGGAGCTTCCATACCAATCA+TGG | - | chr1_4:43443010-43443029 | None:intergenic | 45.0% | |
| ATGATTGGTATGGAAGCTCC+TGG | + | chr1_4:43443009-43443028 | Msa0164290:CDS | 45.0% | |
| GGAAACATCGTATTGAGTGG+TGG | + | chr1_4:43443096-43443115 | Msa0164290:CDS | 45.0% | |
| ACTCATCCTATCAGCAATGC+CGG | - | chr1_4:43443136-43443155 | None:intergenic | 45.0% | |
| GAGTAAGGAGATCACAGCAT+TGG | + | chr1_4:43443152-43443171 | Msa0164290:CDS | 45.0% | |
| ACACTATACTTCCTCTCTGG+TGG | - | chr1_4:43443210-43443229 | None:intergenic | 45.0% | |
| CAGACACTATACTTCCTCTC+TGG | - | chr1_4:43443213-43443232 | None:intergenic | 45.0% | |
| ! | CAGAGAGGAAGTATAGTGTC+TGG | + | chr1_4:43443211-43443230 | Msa0164290:CDS | 45.0% |
| CATGCACTATACCTGTTGGA+AGG | - | chr1_4:43443268-43443287 | None:intergenic | 45.0% | |
| !!! | GTTAATTTTTTTTTTTTTTT+TGG | - | chr1_4:43440406-43440425 | None:intergenic | 5.0% |
| AGCTGATGCAGCCAGAATTG+CGG | - | chr1_4:43440992-43441011 | None:intergenic | 50.0% | |
| ATGTAGCTAACCCCACTTGG+TGG | + | chr1_4:43441185-43441204 | Msa0164290:intron | 50.0% | |
| TGTAGCTAACCCCACTTGGT+GGG | + | chr1_4:43441186-43441205 | Msa0164290:intron | 50.0% | |
| ! | TAACCCCACTTGGTGGGATA+AGG | + | chr1_4:43441192-43441211 | Msa0164290:intron | 50.0% |
| ! | AAGCCTTATCCCACCAAGTG+GGG | - | chr1_4:43441198-43441217 | None:intergenic | 50.0% |
| ! | CAAGCCTTATCCCACCAAGT+GGG | - | chr1_4:43441199-43441218 | None:intergenic | 50.0% |
| ! | TCAAGCCTTATCCCACCAAG+TGG | - | chr1_4:43441200-43441219 | None:intergenic | 50.0% |
| AATTGCGATCCTTGCGAGTC+TGG | + | chr1_4:43441298-43441317 | Msa0164290:intron | 50.0% | |
| ATTGCGATCCTTGCGAGTCT+GGG | + | chr1_4:43441299-43441318 | Msa0164290:intron | 50.0% | |
| GAGTCTGGGGAATTGGAACA+CGG | + | chr1_4:43441313-43441332 | Msa0164290:intron | 50.0% | |
| GCGGTGTTCCCTAGTATTGT+AGG | + | chr1_4:43441454-43441473 | Msa0164290:CDS | 50.0% | |
| CGTGGACGACCTACAATACT+AGG | - | chr1_4:43441466-43441485 | None:intergenic | 50.0% | |
| TACCAACCATCACACCAGTG+TGG | - | chr1_4:43441489-43441508 | None:intergenic | 50.0% | |
| ! | CACTGGTGTGATGGTTGGTA+TGG | + | chr1_4:43441489-43441508 | Msa0164290:CDS | 50.0% |
| GGTGCTTCAGTGAGAAGAAC+TGG | - | chr1_4:43441676-43441695 | None:intergenic | 50.0% | |
| TATGCTAGTGGCCGTACAAC+CGG | + | chr1_4:43441796-43441815 | Msa0164290:CDS | 50.0% | |
| AGACCCTGGATCATTAGGGT+CGG | + | chr1_4:43441890-43441909 | Msa0164290:intron | 50.0% | |
| AGTCCGACCCTAATGATCCA+GGG | - | chr1_4:43441896-43441915 | None:intergenic | 50.0% | |
| TAGTCCGACCCTAATGATCC+AGG | - | chr1_4:43441897-43441916 | None:intergenic | 50.0% | |
| ATCCTGCGTTTGGATCTTGC+AGG | + | chr1_4:43442736-43442755 | Msa0164290:CDS | 50.0% | |
| !! | GGTGAAAGAGTATCCACGCT+CGG | - | chr1_4:43442797-43442816 | None:intergenic | 50.0% |
| CGAAATCGTGAGAGACGTGA+AGG | + | chr1_4:43442831-43442850 | Msa0164290:CDS | 50.0% | |
| AACAGCTGAGCTCGTCTTTG+AGG | - | chr1_4:43442902-43442921 | None:intergenic | 50.0% | |
| ! | CTATGAGTTGCCTGATGGAC+AGG | + | chr1_4:43442930-43442949 | Msa0164290:CDS | 50.0% |
| TTCAGGACAACGGAAACGCT+CGG | - | chr1_4:43442971-43442990 | None:intergenic | 50.0% | |
| !! | GATGGCTGGAAGAGTACTTC+AGG | - | chr1_4:43442988-43443007 | None:intergenic | 50.0% |
| CTCTTCCAGCCATCCATGAT+TGG | + | chr1_4:43442994-43443013 | Msa0164290:CDS | 50.0% | |
| CCATACCAATCATGGATGGC+TGG | - | chr1_4:43443002-43443021 | None:intergenic | 50.0% | |
| CCAGCCATCCATGATTGGTA+TGG | + | chr1_4:43442999-43443018 | Msa0164290:CDS | 50.0% | |
| TCATCCTATCAGCAATGCCG+GGG | - | chr1_4:43443134-43443153 | None:intergenic | 50.0% | |
| CTCATCCTATCAGCAATGCC+GGG | - | chr1_4:43443135-43443154 | None:intergenic | 50.0% | |
| !! | CTGGATTGGAGGCTCCATTT+TGG | + | chr1_4:43443230-43443249 | Msa0164290:CDS | 50.0% |
| !! | TACCTGTTGGAAGGTGCTGA+GGG | - | chr1_4:43443259-43443278 | None:intergenic | 50.0% |
| !! | ATACCTGTTGGAAGGTGCTG+AGG | - | chr1_4:43443260-43443279 | None:intergenic | 50.0% |
| CAGGCCCTTCAATTGTTCAC+AGG | + | chr1_4:43443823-43443842 | Msa0164290:CDS | 50.0% | |
| ! | TGAGGTACCCGCGTTGTTGT+TGG | - | chr1_4:43440275-43440294 | None:intergenic | 55.0% |
| GCTGCATTTGACTGCGAGTC+TGG | + | chr1_4:43441009-43441028 | Msa0164290:intron | 55.0% | |
| TTGCGATCCTTGCGAGTCTG+GGG | + | chr1_4:43441300-43441319 | Msa0164290:intron | 55.0% | |
| TCCTTGCGAGTCTGGGGAAT+TGG | + | chr1_4:43441306-43441325 | Msa0164290:intron | 55.0% | |
| TCCAATTCCCCAGACTCGCA+AGG | - | chr1_4:43441310-43441329 | None:intergenic | 55.0% | |
| TTGCCGGAGATGATGCACCA+AGG | + | chr1_4:43441431-43441450 | Msa0164290:CDS | 55.0% | |
| TGCCGGAGATGATGCACCAA+GGG | + | chr1_4:43441432-43441451 | Msa0164290:CDS | 55.0% | |
| ATACTAGGGAACACCGCCCT+TGG | - | chr1_4:43441451-43441470 | None:intergenic | 55.0% | |
| ! | AAGCGAAAGCACGGCCTGAA+TGG | - | chr1_4:43441776-43441795 | None:intergenic | 55.0% |
| ACGCAGGATTGCGTGTGGAA+GGG | - | chr1_4:43442725-43442744 | None:intergenic | 55.0% | |
| AACGCAGGATTGCGTGTGGA+AGG | - | chr1_4:43442726-43442745 | None:intergenic | 55.0% | |
| TCCACACGCAATCCTGCGTT+TGG | + | chr1_4:43442726-43442745 | Msa0164290:CDS | 55.0% | |
| TCCAAACGCAGGATTGCGTG+TGG | - | chr1_4:43442730-43442749 | None:intergenic | 55.0% | |
| GACCTGCAAGATCCAAACGC+AGG | - | chr1_4:43442741-43442760 | None:intergenic | 55.0% | |
| GTCTCTCACGATTTCGCGCT+CGG | - | chr1_4:43442827-43442846 | None:intergenic | 55.0% | |
| GGTGGTACGACTATGTTCCC+CGG | + | chr1_4:43443114-43443133 | Msa0164290:CDS | 55.0% | |
| TGTTCCCCGGCATTGCTGAT+AGG | + | chr1_4:43443127-43443146 | Msa0164290:CDS | 55.0% | |
| ! | GGTGCTGAGGGAAGCCAAAA+TGG | - | chr1_4:43443247-43443266 | None:intergenic | 55.0% |
| TTCCCTCAGCACCTTCCAAC+AGG | + | chr1_4:43443254-43443273 | Msa0164290:CDS | 55.0% | |
| CCAGACTCGCAGTCATGTCG+CGG | - | chr1_4:43441039-43441058 | None:intergenic | 60.0% | |
| TCGTGGCAGCAGTCATGTCG+CGG | - | chr1_4:43441066-43441085 | None:intergenic | 60.0% | |
| ! | CGCCCTTGGTGCATCATCTC+CGG | - | chr1_4:43441437-43441456 | None:intergenic | 60.0% |
| CGGAGATGATGCACCAAGGG+CGG | + | chr1_4:43441435-43441454 | Msa0164290:CDS | 60.0% | |
| TCCACGCCACACTGGTGTGA+TGG | + | chr1_4:43441480-43441499 | Msa0164290:CDS | 60.0% | |
| ACCATCACACCAGTGTGGCG+TGG | - | chr1_4:43441484-43441503 | None:intergenic | 60.0% | |
| CGCCACACTGGTGTGATGGT+TGG | + | chr1_4:43441484-43441503 | Msa0164290:CDS | 60.0% | |
| GATTTCGCGCTCGGCTGTTG+TGG | - | chr1_4:43442818-43442837 | None:intergenic | 60.0% | |
| AGGTGGTTGCACCACCAGAG+AGG | + | chr1_4:43443196-43443215 | Msa0164290:CDS | 60.0% | |
| CCGCGACATGACTGCGAGTC+TGG | + | chr1_4:43441036-43441055 | Msa0164290:intron | 65.0% | |
| GTAGGTCGTCCACGCCACAC+TGG | + | chr1_4:43441472-43441491 | Msa0164290:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 43440178 | 43444131 | 43440178 | ID=Msa0164290;Name=Msa0164290 |
| chr1_4 | mRNA | 43440178 | 43444131 | 43440178 | ID=Msa0164290-mRNA-1;Parent=Msa0164290;Name=Msa0164290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=233|1|1|1|0.75|0.6|5|274|377 |
| chr1_4 | exon | 43440178 | 43440397 | 43440178 | ID=Msa0164290-mRNA-1:exon:12471;Parent=Msa0164290-mRNA-1 |
| chr1_4 | exon | 43440751 | 43440823 | 43440751 | ID=Msa0164290-mRNA-1:exon:12472;Parent=Msa0164290-mRNA-1 |
| chr1_4 | exon | 43441424 | 43441817 | 43441424 | ID=Msa0164290-mRNA-1:exon:12473;Parent=Msa0164290-mRNA-1 |
| chr1_4 | exon | 43442662 | 43443275 | 43442662 | ID=Msa0164290-mRNA-1:exon:12474;Parent=Msa0164290-mRNA-1 |
| chr1_4 | exon | 43443792 | 43444131 | 43443792 | ID=Msa0164290-mRNA-1:exon:12475;Parent=Msa0164290-mRNA-1 |
| chr1_4 | five_prime_UTR | 43440178 | 43440397 | 43440178 | ID=Msa0164290-mRNA-1:five_prime_utr;Parent=Msa0164290-mRNA-1 |
| chr1_4 | five_prime_UTR | 43440751 | 43440763 | 43440751 | ID=Msa0164290-mRNA-1:five_prime_utr;Parent=Msa0164290-mRNA-1 |
| chr1_4 | CDS | 43440764 | 43440823 | 43440764 | ID=Msa0164290-mRNA-1:cds;Parent=Msa0164290-mRNA-1 |
| chr1_4 | CDS | 43441424 | 43441817 | 43441424 | ID=Msa0164290-mRNA-1:cds;Parent=Msa0164290-mRNA-1 |
| chr1_4 | CDS | 43442662 | 43443275 | 43442662 | ID=Msa0164290-mRNA-1:cds;Parent=Msa0164290-mRNA-1 |
| chr1_4 | CDS | 43443792 | 43443857 | 43443792 | ID=Msa0164290-mRNA-1:cds;Parent=Msa0164290-mRNA-1 |
| chr1_4 | three_prime_UTR | 43443858 | 43444131 | 43443858 | ID=Msa0164290-mRNA-1:three_prime_utr;Parent=Msa0164290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
