Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118270 | sp|O81221|ACT_GOSHI | 98.143 | 377 | 7 | 0 | 1 | 377 | 1 | 377 | 0.0 | 774 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118270 | B7FIH3 | 99.735 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022260 | Msa0118270 | 0.946555 | 3.691928e-105 | -8.615850e-47 |
| Msa0025160 | Msa0118270 | 0.801869 | 7.347061e-49 | -8.615850e-47 |
| Msa0062340 | Msa0118270 | 0.810625 | 1.050193e-50 | -8.615850e-47 |
| Msa0077560 | Msa0118270 | 0.848744 | 5.042651e-60 | -8.615850e-47 |
| Msa0118270 | Msa0122330 | 0.802155 | 6.414581e-49 | -8.615850e-47 |
| Msa0118270 | Msa0125360 | 0.804928 | 1.706683e-49 | -8.615850e-47 |
| Msa0118270 | Msa0161400 | 0.998796 | 6.337358e-277 | -8.615850e-47 |
| Msa0118270 | Msa0164290 | 0.894911 | 1.578421e-75 | -8.615850e-47 |
| Msa0118270 | Msa0183710 | 0.802774 | 4.782272e-49 | -8.615850e-47 |
| Msa0118270 | Msa0204950 | 0.819909 | 9.064733e-53 | -8.615850e-47 |
| Msa0118270 | Msa0249850 | 0.806757 | 7.045047e-50 | -8.615850e-47 |
| Msa0118270 | Msa0269210 | 0.833715 | 4.549272e-56 | -8.615850e-47 |
| Msa0118270 | Msa0281470 | 0.814150 | 1.784049e-51 | -8.615850e-47 |
| Msa0118270 | Msa0307270 | 0.818034 | 2.419344e-52 | -8.615850e-47 |
| Msa0118270 | Msa0320600 | 0.823869 | 1.097948e-53 | -8.615850e-47 |
| Msa0118270 | Msa0354840 | 0.844534 | 7.124684e-59 | -8.615850e-47 |
| Msa0118270 | Msa0375640 | 0.801761 | 7.729443e-49 | -8.615850e-47 |
| Msa0118270 | Msa0424160 | 0.807464 | 4.990078e-50 | -8.615850e-47 |
| Msa0118270 | Msa0437480 | 0.819705 | 1.009201e-52 | -8.615850e-47 |
| Msa0118270 | Msa0440350 | 0.854420 | 1.246075e-61 | -8.615850e-47 |
| Msa0118270 | Msa0481890 | 0.815090 | 1.104918e-51 | -8.615850e-47 |
| Msa0118270 | Msa0484210 | -0.810094 | 1.367227e-50 | -8.615850e-47 |
| Msa0118270 | Msa0495300 | 0.810613 | 1.056625e-50 | -8.615850e-47 |
| Msa0118270 | Msa0502510 | 0.815586 | 8.569499e-52 | -8.615850e-47 |
| Msa0118270 | Msa0519760 | 0.828806 | 7.327332e-55 | -8.615850e-47 |
| Msa0118270 | Msa0519810 | 0.837580 | 4.779523e-57 | -8.615850e-47 |
| Msa0118270 | Msa0519840 | 0.830167 | 3.420003e-55 | -8.615850e-47 |
| Msa0118270 | Msa0553750 | 0.804600 | 1.998461e-49 | -8.615850e-47 |
| Msa0118270 | Msa0574900 | 0.815311 | 9.865614e-52 | -8.615850e-47 |
| Msa0118270 | Msa0607800 | 0.824367 | 8.388118e-54 | -8.615850e-47 |
| Msa0118270 | Msa0648040 | 0.820967 | 5.185369e-53 | -8.615850e-47 |
| Msa0118270 | Msa0690740 | 0.801203 | 1.005883e-48 | -8.615850e-47 |
| Msa0118270 | Msa0692790 | 0.818442 | 1.956198e-52 | -8.615850e-47 |
| Msa0118270 | Msa0709440 | 0.814695 | 1.351320e-51 | -8.615850e-47 |
| Msa0118270 | Msa0716890 | 0.845111 | 4.978903e-59 | -8.615850e-47 |
| Msa0118270 | Msa0754430 | 0.804122 | 2.512994e-49 | -8.615850e-47 |
| Msa0118270 | Msa0754450 | 0.805573 | 1.250473e-49 | -8.615850e-47 |
| Msa0118270 | Msa0756330 | 0.823657 | 1.231130e-53 | -8.615850e-47 |
| Msa0118270 | Msa0758030 | 0.841297 | 5.177170e-58 | -8.615850e-47 |
| Msa0118270 | Msa0837710 | 0.808149 | 3.568591e-50 | -8.615850e-47 |
| Msa0118270 | Msa0838620 | -0.807858 | 4.116638e-50 | -8.615850e-47 |
| Msa0118270 | Msa1072940 | 0.820861 | 5.482785e-53 | -8.615850e-47 |
| Msa0118270 | Msa1084530 | 0.815274 | 1.005386e-51 | -8.615850e-47 |
| Msa0118270 | Msa1104110 | 0.804274 | 2.336882e-49 | -8.615850e-47 |
| Msa0118270 | Msa1125820 | 0.814457 | 1.525507e-51 | -8.615850e-47 |
| Msa0118270 | Msa1125990 | 0.814502 | 1.490955e-51 | -8.615850e-47 |
| Msa0118270 | Msa1132990 | 0.803718 | 3.049724e-49 | -8.615850e-47 |
| Msa0118270 | Msa1160920 | 0.810630 | 1.047538e-50 | -8.615850e-47 |
| Msa0118270 | Msa1171290 | 0.814608 | 1.412481e-51 | -8.615850e-47 |
| Msa0118270 | Msa1216980 | 0.812531 | 4.044866e-51 | -8.615850e-47 |
| Msa0118270 | Msa1257720 | 0.801779 | 7.663476e-49 | -8.615850e-47 |
| Msa0118270 | Msa1305250 | 0.802752 | 4.833369e-49 | -8.615850e-47 |
| Msa0118270 | Msa1366150 | 0.818505 | 1.892955e-52 | -8.615850e-47 |
| Msa0118270 | Msa1384150 | 0.806987 | 6.297382e-50 | -8.615850e-47 |
| Msa0118270 | Msa1387440 | 0.835138 | 1.998297e-56 | -8.615850e-47 |
| Msa0118270 | Msa1427110 | 0.816682 | 4.877252e-52 | -8.615850e-47 |
| Msa0118270 | Msa1450520 | 0.801922 | 7.164651e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118270 | MtrunA17_Chr1g0175391 | 99.735 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 0.0 | 782 |
| Msa0118270 | MtrunA17_Chr2g0328091 | 98.408 | 377 | 6 | 0 | 1 | 377 | 1 | 377 | 0.0 | 775 |
| Msa0118270 | MtrunA17_Chr7g0258721 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 770 |
| Msa0118270 | MtrunA17_Chr6g0448881 | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 769 |
| Msa0118270 | MtrunA17_Chr7g0223901 | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 766 |
| Msa0118270 | MtrunA17_Chr3g0129641 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0118270 | MtrunA17_Chr2g0278591 | 93.634 | 377 | 24 | 0 | 1 | 377 | 1 | 377 | 0.0 | 749 |
| Msa0118270 | MtrunA17_Chr7g0224401 | 43.272 | 379 | 201 | 3 | 10 | 374 | 7 | 385 | 5.64e-120 | 352 |
| Msa0118270 | MtrunA17_Chr5g0427591 | 37.892 | 446 | 204 | 11 | 1 | 376 | 1 | 443 | 3.85e-94 | 288 |
| Msa0118270 | MtrunA17_Chr8g0361001 | 37.892 | 446 | 204 | 11 | 1 | 376 | 1 | 443 | 5.74e-94 | 288 |
| Msa0118270 | MtrunA17_Chr8g0381261 | 34.550 | 411 | 219 | 8 | 10 | 372 | 10 | 418 | 9.19e-72 | 230 |
| Msa0118270 | MtrunA17_Chr3g0089031 | 37.766 | 376 | 208 | 9 | 11 | 377 | 5 | 363 | 3.62e-68 | 219 |
| Msa0118270 | MtrunA17_Chr2g0305361 | 27.650 | 434 | 248 | 7 | 8 | 377 | 6 | 437 | 1.45e-56 | 191 |
| Msa0118270 | MtrunA17_Chr3g0080021 | 30.640 | 297 | 182 | 9 | 91 | 371 | 179 | 467 | 3.96e-40 | 148 |
| Msa0118270 | MtrunA17_Chr8g0369101 | 31.399 | 293 | 174 | 10 | 91 | 366 | 187 | 469 | 9.62e-36 | 136 |
| Msa0118270 | MtrunA17_Chr3g0111971 | 29.365 | 252 | 159 | 7 | 9 | 245 | 21 | 268 | 2.28e-22 | 99.0 |
| Msa0118270 | MtrunA17_Chr3g0111971 | 33.607 | 122 | 78 | 2 | 250 | 368 | 586 | 707 | 1.63e-15 | 78.2 |
| Msa0118270 | MtrunA17_Chr8g0336071 | 41.053 | 95 | 56 | 0 | 105 | 199 | 1 | 95 | 9.90e-20 | 83.2 |
| Msa0118270 | MtrunA17_Chr8g0336061 | 41.304 | 92 | 41 | 1 | 241 | 319 | 12 | 103 | 5.45e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118270 | AT3G53750.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0118270 | AT3G53750.2 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0118270 | AT2G37620.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0118270 | AT2G37620.3 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0118270 | AT2G37620.2 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0118270 | AT2G37620.4 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0118270 | AT3G46520.2 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0118270 | AT3G46520.1 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0118270 | AT5G09810.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0118270 | AT3G12110.1 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0118270 | AT5G59370.2 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0118270 | AT5G59370.1 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0118270 | AT3G18780.2 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 746 |
| Msa0118270 | AT3G18780.3 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 746 |
| Msa0118270 | AT1G49240.1 | 92.573 | 377 | 28 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0118270 | AT3G18780.1 | 92.758 | 359 | 26 | 0 | 1 | 359 | 1 | 359 | 0.0 | 705 |
| Msa0118270 | AT2G42100.1 | 84.783 | 368 | 56 | 0 | 10 | 377 | 11 | 378 | 0.0 | 676 |
| Msa0118270 | AT2G42090.1 | 70.541 | 370 | 104 | 1 | 7 | 376 | 1 | 365 | 0.0 | 566 |
| Msa0118270 | AT2G42170.1 | 78.012 | 332 | 70 | 1 | 46 | 377 | 1 | 329 | 0.0 | 558 |
| Msa0118270 | AT2G42170.3 | 78.012 | 332 | 70 | 1 | 46 | 377 | 1 | 329 | 0.0 | 558 |
| Msa0118270 | AT2G42170.4 | 77.885 | 312 | 66 | 1 | 46 | 357 | 1 | 309 | 0.0 | 521 |
| Msa0118270 | AT2G42170.2 | 77.885 | 312 | 66 | 1 | 46 | 357 | 1 | 309 | 0.0 | 521 |
| Msa0118270 | AT2G42170.5 | 78.319 | 226 | 46 | 1 | 152 | 377 | 9 | 231 | 1.47e-131 | 376 |
| Msa0118270 | AT3G27000.1 | 44.327 | 379 | 197 | 4 | 10 | 374 | 7 | 385 | 3.56e-122 | 358 |
| Msa0118270 | AT1G18450.1 | 37.246 | 443 | 208 | 9 | 1 | 376 | 1 | 440 | 2.78e-95 | 291 |
| Msa0118270 | AT1G13180.1 | 34.615 | 416 | 212 | 11 | 10 | 372 | 9 | 417 | 8.40e-72 | 231 |
| Msa0118270 | AT3G60830.1 | 37.731 | 379 | 212 | 9 | 7 | 377 | 1 | 363 | 1.91e-67 | 217 |
| Msa0118270 | AT3G33520.1 | 30.166 | 421 | 236 | 7 | 10 | 377 | 5 | 420 | 4.30e-58 | 195 |
| Msa0118270 | AT5G56180.3 | 31.690 | 284 | 169 | 9 | 91 | 358 | 50 | 324 | 2.60e-35 | 132 |
| Msa0118270 | AT5G56180.1 | 31.690 | 284 | 169 | 9 | 91 | 358 | 182 | 456 | 1.57e-34 | 133 |
| Msa0118270 | AT3G12380.2 | 29.572 | 257 | 158 | 6 | 9 | 245 | 21 | 274 | 3.23e-25 | 107 |
| Msa0118270 | AT3G12380.2 | 33.793 | 145 | 92 | 2 | 228 | 368 | 572 | 716 | 2.68e-16 | 81.3 |
| Msa0118270 | AT3G12380.1 | 29.412 | 255 | 155 | 6 | 9 | 245 | 21 | 268 | 1.56e-24 | 105 |
| Msa0118270 | AT3G12380.1 | 33.793 | 145 | 92 | 2 | 228 | 368 | 566 | 710 | 2.67e-16 | 81.3 |
| Msa0118270 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.26e-23 | 95.1 |
| Msa0118270 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.26e-23 | 95.1 |
| Msa0118270 | AT5G56180.2 | 32.673 | 202 | 113 | 8 | 91 | 281 | 182 | 371 | 1.29e-19 | 89.7 |
| Msa0118270 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 2.93e-12 | 64.7 |
Find 118 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTCTTGTTTGTGATAA+TGG | 0.154159 | 1_3:-40634175 | Msa0118270:CDS |
| ATAGGTATTGTTCTTGATTC+TGG | 0.193204 | 1_3:-40632405 | Msa0118270:intron |
| CTGGATTGGAGGCTCCATTT+TGG | 0.220933 | 1_3:-40631833 | Msa0118270:CDS |
| AGCATGGAATTGTTAGTAAC+TGG | 0.268065 | 1_3:-40633403 | Msa0118270:CDS |
| ATAGCTCTTCTATAATAAAA+TGG | 0.300250 | 1_3:+40631117 | None:intergenic |
| TGTTAGTAACTGGGATGATA+TGG | 0.302766 | 1_3:-40633393 | Msa0118270:CDS |
| CATTCATTTCGGAGATTCTA+AGG | 0.312867 | 1_3:-40634592 | Msa0118270:intron |
| GTGATGAAGCTCAATCAAAA+AGG | 0.325898 | 1_3:-40633454 | Msa0118270:CDS |
| GTTCACAGGAAATGCTTCTA+AGG | 0.326765 | 1_3:-40631306 | Msa0118270:exon |
| ACCAAGTAGCATGAAAATTA+AGG | 0.346175 | 1_3:-40631887 | Msa0118270:CDS |
| AACAGCCGAGCTCGTCTTTG+AGG | 0.347903 | 1_3:+40632164 | None:intergenic |
| CTAACAATTCCATGCTCAAT+TGG | 0.355777 | 1_3:+40633410 | None:intergenic |
| AGAAGAACGGGATGTTCTTC+AGG | 0.356655 | 1_3:+40633326 | None:intergenic |
| ACACGTTGTTTCATTCATTT+CGG | 0.361743 | 1_3:-40634603 | Msa0118270:five_prime_UTR |
| ATCTATCTAAATTGAATTTG+AGG | 0.361879 | 1_3:-40634766 | Msa0118270:five_prime_UTR |
| TAATTGCAGGCTGGATTTGC+CGG | 0.363107 | 1_3:-40633572 | Msa0118270:intron |
| TCCACACGCAATCCTGCGTT+TGG | 0.371608 | 1_3:-40632337 | Msa0118270:CDS |
| CGTGGACGACCTACAATACT+TGG | 0.372841 | 1_3:+40633524 | None:intergenic |
| GGTGCTGAGGGAAGCCAAAA+TGG | 0.378341 | 1_3:+40631819 | None:intergenic |
| CACTGGTGTGATGGTTGGTA+TGG | 0.381213 | 1_3:-40633498 | Msa0118270:CDS |
| CTTGTTTGTGATAATGGAAC+TGG | 0.393561 | 1_3:-40634169 | Msa0118270:CDS |
| GATATTAGAAAGGATCTCTA+TGG | 0.393879 | 1_3:-40631988 | Msa0118270:CDS |
| AGCTATGTATGTTGCCATTC+AGG | 0.402911 | 1_3:-40633228 | Msa0118270:CDS |
| ATCCTGCGTTTGGATCTTGC+AGG | 0.408141 | 1_3:-40632327 | Msa0118270:CDS |
| CGATTAGCCTTTGGATTAAG+TGG | 0.413728 | 1_3:+40633293 | None:intergenic |
| AGGAAGTATAGTGTCTGGAT+TGG | 0.419464 | 1_3:-40631847 | Msa0118270:CDS |
| GATGGCTGGAAGAGTACTTC+AGG | 0.422610 | 1_3:+40632078 | None:intergenic |
| TGTTCCCCGGCATTGCTGAT+AGG | 0.428746 | 1_3:-40631936 | Msa0118270:CDS |
| GCTATGTATTGTGACTGATT+TGG | 0.445766 | 1_3:-40631099 | Msa0118270:three_prime_UTR |
| TTCCCTCAGCACCTTCCAAC+AGG | 0.446388 | 1_3:-40631809 | Msa0118270:intron |
| TGAGGTACCCGCGTTGTTGT+TGG | 0.447988 | 1_3:+40634696 | None:intergenic |
| CTCTTCCAGCCATCCATGAT+TGG | 0.448268 | 1_3:-40632069 | Msa0118270:CDS |
| ATACATAGCTGGAGCATTGA+AGG | 0.451630 | 1_3:+40633241 | None:intergenic |
| AAGTATAGTGTCTGGATTGG+AGG | 0.453134 | 1_3:-40631844 | Msa0118270:CDS |
| AGGGCATATCCTTCATAGAT+AGG | 0.454246 | 1_3:+40632360 | None:intergenic |
| GATGGACAGGTGATCACAAT+AGG | 0.457168 | 1_3:-40632120 | Msa0118270:CDS |
| AAGGCTGAATATGATGAATC+AGG | 0.458861 | 1_3:-40631339 | Msa0118270:CDS |
| TATGCTAGTGGTCGTACAAC+CGG | 0.459900 | 1_3:-40633191 | Msa0118270:intron |
| CGCTCTTGGTGCATCATCTC+CGG | 0.460066 | 1_3:+40633553 | None:intergenic |
| AAGCGAAAGCACGGCCTGAA+TGG | 0.462189 | 1_3:+40633214 | None:intergenic |
| ATTGTGATCACCTGTCCATC+AGG | 0.463240 | 1_3:+40632123 | None:intergenic |
| GATGAGATAGTGGTATGTAT+TGG | 0.465957 | 1_3:-40631066 | Msa0118270:three_prime_UTR |
| CTCATCCTATCAGCAATGCC+GGG | 0.468005 | 1_3:+40631931 | None:intergenic |
| GGTGCTTCAGTTAGAAGAAC+GGG | 0.471878 | 1_3:+40633314 | None:intergenic |
| ATACTTGGGAACACCGCTCT+TGG | 0.479361 | 1_3:+40633539 | None:intergenic |
| CATTTCCTGTGAACAATTGA+AGG | 0.480733 | 1_3:+40631315 | None:intergenic |
| TTCATAATCAAGAGCTATGT+AGG | 0.480816 | 1_3:+40632200 | None:intergenic |
| TAACAATTCCATGCTCAATT+GGG | 0.481241 | 1_3:+40633411 | None:intergenic |
| GCGGTGTTCCCAAGTATTGT+AGG | 0.485103 | 1_3:-40633533 | Msa0118270:CDS |
| ATTGTTCTTGATTCTGGAGA+TGG | 0.486571 | 1_3:-40632399 | Msa0118270:CDS |
| CAGAGAGGAAGTATAGTGTC+TGG | 0.492085 | 1_3:-40631852 | Msa0118270:CDS |
| AACGCAGGATTGCGTGTGGA+AGG | 0.498417 | 1_3:+40632340 | None:intergenic |
| CTATGAGTTACCTGATGGAC+AGG | 0.498962 | 1_3:-40632133 | Msa0118270:CDS |
| AGGAGCTTCCATACCAATCA+TGG | 0.501773 | 1_3:+40632056 | None:intergenic |
| GGGATGATATGGAAAAGATC+TGG | 0.506672 | 1_3:-40633382 | Msa0118270:CDS |
| TATTTATATGTTGGGATGAG+AGG | 0.517815 | 1_3:-40631177 | Msa0118270:three_prime_UTR |
| GCTCATCCTATCAGCAATGC+CGG | 0.518030 | 1_3:+40631930 | None:intergenic |
| GATTTCACGCTCGGCTGTTG+TGG | 0.522000 | 1_3:+40632248 | None:intergenic |
| CAGACACTATACTTCCTCTC+TGG | 0.523127 | 1_3:+40631853 | None:intergenic |
| CACACAGTTCCTATCTATGA+AGG | 0.525553 | 1_3:-40632369 | Msa0118270:CDS |
| GTGCTTTCGCTTTATGCTAG+TGG | 0.528191 | 1_3:-40633203 | Msa0118270:CDS |
| CCATACCAATCATGGATGGC+TGG | 0.531059 | 1_3:+40632064 | None:intergenic |
| GTCTCTCACGATTTCACGCT+CGG | 0.537921 | 1_3:+40632239 | None:intergenic |
| CCAGCCATCCATGATTGGTA+TGG | 0.540901 | 1_3:-40632064 | Msa0118270:CDS |
| TTCAGGACAACGGAAACGTT+CGG | 0.541873 | 1_3:+40632095 | None:intergenic |
| CAGGCCCTTCAATTGTTCAC+AGG | 0.542188 | 1_3:-40631320 | Msa0118270:CDS |
| ATGAAAATCTTAACCGAGCG+TGG | 0.549893 | 1_3:-40632282 | Msa0118270:CDS |
| ATACCTGTTGGAAGGTGCTG+AGG | 0.550602 | 1_3:+40631806 | None:intergenic |
| GATGGTTGGTATGGGACAAA+AGG | 0.552916 | 1_3:-40633489 | Msa0118270:CDS |
| TGAATGGCAACATACATAGC+TGG | 0.554069 | 1_3:+40633230 | None:intergenic |
| TATGTTGTTTCATGTATACC+AGG | 0.569084 | 1_3:+40632036 | None:intergenic |
| CTAAAGTACCCAATTGAGCA+TGG | 0.570119 | 1_3:-40633419 | Msa0118270:CDS |
| AAGAGCTATGAGTTACCTGA+TGG | 0.572599 | 1_3:-40632138 | Msa0118270:CDS |
| GTGTGATGTCGATATTAGAA+AGG | 0.572715 | 1_3:-40631998 | Msa0118270:CDS |
| TCCACGCCACACTGGTGTGA+TGG | 0.574722 | 1_3:-40633507 | Msa0118270:CDS |
| ATGATTGGTATGGAAGCTCC+TGG | 0.576789 | 1_3:-40632054 | Msa0118270:CDS |
| AGAAACCTCAAAGACGAGCT+CGG | 0.577050 | 1_3:-40632169 | Msa0118270:CDS |
| GAACATGTCTTGTGTGGTTG+AGG | 0.577891 | 1_3:+40634678 | None:intergenic |
| ACGCAGGATTGCGTGTGGAA+GGG | 0.581046 | 1_3:+40632341 | None:intergenic |
| CGCCACACTGGTGTGATGGT+TGG | 0.586183 | 1_3:-40633503 | Msa0118270:CDS |
| GAGCAAGGAGATCACAGCAT+TGG | 0.587533 | 1_3:-40631911 | Msa0118270:CDS |
| TACCTGTTGGAAGGTGCTGA+GGG | 0.587542 | 1_3:+40631807 | None:intergenic |
| ACCATCACACCAGTGTGGCG+TGG | 0.593745 | 1_3:+40633506 | None:intergenic |
| TATATATTCGATAATATAGA+CGG | 0.596384 | 1_3:-40634794 | None:intergenic |
| GTTCCATTATCACAAACAAG+AGG | 0.600317 | 1_3:+40634172 | None:intergenic |
| ACACTATACTTCCTCTCTGG+TGG | 0.604108 | 1_3:+40631856 | None:intergenic |
| ATTTCCTGTGAACAATTGAA+GGG | 0.604151 | 1_3:+40631316 | None:intergenic |
| TAATGGAACTGGAATGGTCA+AGG | 0.604703 | 1_3:-40634158 | Msa0118270:intron |
| TGGTGCTTCAGTTAGAAGAA+CGG | 0.612254 | 1_3:+40633313 | None:intergenic |
| TTTAAAACCAACAACAACGC+GGG | 0.615333 | 1_3:-40634703 | Msa0118270:five_prime_UTR |
| TGAAGCACCACTTAATCCAA+AGG | 0.619561 | 1_3:-40633300 | Msa0118270:CDS |
| TATGGAAACATCGTATTGAG+TGG | 0.620418 | 1_3:-40631970 | Msa0118270:CDS |
| GGTGGTACGACTATGTTCCC+CGG | 0.621683 | 1_3:-40631949 | Msa0118270:CDS |
| GGACAAAAGGATGCATATGT+TGG | 0.623959 | 1_3:-40633476 | Msa0118270:CDS |
| TTGTGATAATGGAACTGGAA+TGG | 0.628921 | 1_3:-40634164 | Msa0118270:CDS |
| TGAAATCGTGAGAGACGTGA+AGG | 0.629620 | 1_3:-40632232 | Msa0118270:CDS |
| GTGCAGTAATCAATAAACAA+TGG | 0.630705 | 1_3:-40634215 | Msa0118270:intron |
| CGGAGATGATGCACCAAGAG+CGG | 0.633201 | 1_3:-40633552 | Msa0118270:CDS |
| GCATGGAATTGTTAGTAACT+GGG | 0.633326 | 1_3:-40633402 | Msa0118270:CDS |
| CATGCACTATACCTGTTGGA+AGG | 0.635341 | 1_3:+40631798 | None:intergenic |
| ACTAGCATAAAGCGAAAGCA+CGG | 0.638011 | 1_3:+40633205 | None:intergenic |
| GCTTCCATACCAATCATGGA+TGG | 0.638459 | 1_3:+40632060 | None:intergenic |
| TCCAAACGCAGGATTGCGTG+TGG | 0.640726 | 1_3:+40632336 | None:intergenic |
| ACTGGTGTGATGGTTGGTAT+GGG | 0.640914 | 1_3:-40633497 | Msa0118270:CDS |
| GTGGACGACCTACAATACTT+GGG | 0.641270 | 1_3:+40633525 | None:intergenic |
| GGTGAAAGAGTATCCACGCT+CGG | 0.643494 | 1_3:+40632269 | None:intergenic |
| CATTGCTGATAGGATGAGCA+AGG | 0.644331 | 1_3:-40631926 | Msa0118270:CDS |
| AAGTAGCATGAAAATTAAGG+TGG | 0.656638 | 1_3:-40631884 | Msa0118270:CDS |
| GGAAACATCGTATTGAGTGG+TGG | 0.669837 | 1_3:-40631967 | Msa0118270:CDS |
| TTTAACGAACATGTCTTGTG+TGG | 0.673057 | 1_3:+40634672 | None:intergenic |
| AATGCAGATGTGGATTGCAA+AGG | 0.677558 | 1_3:-40631358 | Msa0118270:intron |
| TCATCCTATCAGCAATGCCG+GGG | 0.683199 | 1_3:+40631932 | None:intergenic |
| GTAGGTCGTCCACGCCACAC+TGG | 0.686011 | 1_3:-40633515 | Msa0118270:CDS |
| GACCTGCAAGATCCAAACGC+AGG | 0.690015 | 1_3:+40632325 | None:intergenic |
| GGAAGAGTACTTCAGGACAA+CGG | 0.707065 | 1_3:+40632085 | None:intergenic |
| AGGTGGTTGCACCACCAGAG+AGG | 0.708305 | 1_3:-40631867 | Msa0118270:CDS |
| CTTCATAGATAGGAACTGTG+TGG | 0.711555 | 1_3:+40632370 | None:intergenic |
| TACCAACCATCACACCAGTG+TGG | 0.726907 | 1_3:+40633501 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTTTTTTTTTTT+TGG | + | chr1_3:40631255-40631274 | None:intergenic | 0.0% |
| !! | TTATGATAATAATATAAGTT+TGG | - | chr1_3:40631572-40631591 | Msa0118270:intron | 10.0% |
| !! | TATCAAATGTTAAAAAAAAA+TGG | + | chr1_3:40633314-40633333 | None:intergenic | 10.0% |
| !! | TATAAAATATAATTGTAGAA+TGG | - | chr1_3:40633363-40633382 | Msa0118270:CDS | 10.0% |
| !! | ATAAAATATAATTGTAGAAT+GGG | - | chr1_3:40633364-40633383 | Msa0118270:CDS | 10.0% |
| !!! | TTTTATAATGTTTTAAATCG+TGG | + | chr1_3:40631913-40631932 | None:intergenic | 15.0% |
| !!! | TTATTTTCCTTTCATTTTAA+AGG | + | chr1_3:40634071-40634090 | None:intergenic | 15.0% |
| !!! | TTTTCTTCTATTTATATGTT+GGG | - | chr1_3:40634632-40634651 | Msa0118270:five_prime_UTR | 15.0% |
| !! | ATCTATCTAAATTGAATTTG+AGG | - | chr1_3:40631051-40631070 | Msa0118270:three_prime_UTR | 20.0% |
| !!! | TTTTAAAAAAGGAAAGTTAG+TGG | + | chr1_3:40631101-40631120 | None:intergenic | 20.0% |
| !! | TAATGAGTTAGATAGAAATA+TGG | - | chr1_3:40631959-40631978 | Msa0118270:CDS | 20.0% |
| !! | ATATCTTTACAATTCTCAAA+AGG | + | chr1_3:40632676-40632695 | None:intergenic | 20.0% |
| !!! | ATATGTTTGAAATGATAGAA+AGG | - | chr1_3:40632980-40632999 | Msa0118270:intron | 20.0% |
| !!! | TTTTTGGTAATTTGAAAGAA+TGG | + | chr1_3:40633243-40633262 | None:intergenic | 20.0% |
| !! | TCTTTCAAATTACCAAAAAA+TGG | - | chr1_3:40633244-40633263 | Msa0118270:CDS | 20.0% |
| !!! | AAAGTTTTCATTCCATTTTT+TGG | + | chr1_3:40633259-40633278 | None:intergenic | 20.0% |
| !! | AACTTTAAATATCCAAACAA+TGG | - | chr1_3:40633273-40633292 | Msa0118270:CDS | 20.0% |
| !! | TCTTAAACCACATTAAAAAA+GGG | + | chr1_3:40634414-40634433 | None:intergenic | 20.0% |
| !!! | GTTTTCTTCTATTTATATGT+TGG | - | chr1_3:40634631-40634650 | Msa0118270:five_prime_UTR | 20.0% |
| !! | ATAGCTCTTCTATAATAAAA+TGG | + | chr1_3:40634703-40634722 | None:intergenic | 20.0% |
| !!! | GTTGTTGTTGGTTTTAAAAA+AGG | + | chr1_3:40631112-40631131 | None:intergenic | 25.0% |
| ! | ATGATGATAGAAAATGAGAA+AGG | + | chr1_3:40631306-40631325 | None:intergenic | 25.0% |
| ! | CTAATCAAATAAGATCAACA+AGG | + | chr1_3:40631700-40631719 | None:intergenic | 25.0% |
| !! | CTTGTTGATCTTATTTGATT+AGG | - | chr1_3:40631698-40631717 | Msa0118270:intron | 25.0% |
| !! | GATCTTATTTGATTAGGTAA+AGG | - | chr1_3:40631704-40631723 | Msa0118270:intron | 25.0% |
| ! | CAATTGTATAACACATATCA+AGG | + | chr1_3:40632092-40632111 | None:intergenic | 25.0% |
| !! | TACCACAATTTAACACATTT+TGG | - | chr1_3:40632170-40632189 | Msa0118270:CDS | 25.0% |
| ! | AACCAAAATGTGTTAAATTG+TGG | + | chr1_3:40632175-40632194 | None:intergenic | 25.0% |
| !! | GATGTGTTTTATATAATTGC+AGG | - | chr1_3:40632232-40632251 | Msa0118270:CDS | 25.0% |
| ! | AAACATAGAAGAATCTTTAC+CGG | + | chr1_3:40632648-40632667 | None:intergenic | 25.0% |
| ! | GTAAAGATATATGTGAAAAG+TGG | - | chr1_3:40632686-40632705 | Msa0118270:intron | 25.0% |
| !! | TTTTTATCAACGTACTTGTT+TGG | + | chr1_3:40632778-40632797 | None:intergenic | 25.0% |
| ! | AAATTCTAATGAAATACGAG+TGG | + | chr1_3:40632852-40632871 | None:intergenic | 25.0% |
| ! | AATGTTTCATGAATGATTTG+AGG | - | chr1_3:40632957-40632976 | Msa0118270:intron | 25.0% |
| ! | ATGAAACTGAATGAATAGTA+CGG | + | chr1_3:40633150-40633169 | None:intergenic | 25.0% |
| ! | AAAATCACAAAACCATTGTT+TGG | + | chr1_3:40633288-40633307 | None:intergenic | 25.0% |
| !!! | TTAGAGACCTTTAAAATGAA+AGG | - | chr1_3:40634061-40634080 | Msa0118270:intron | 25.0% |
| ! | GAAAGGAAAATAATGCATAA+AGG | - | chr1_3:40634078-40634097 | Msa0118270:intron | 25.0% |
| ! | GTTTATATGAGCTTATCTAT+AGG | - | chr1_3:40634139-40634158 | Msa0118270:intron | 25.0% |
| ! | TGTTTATACATAGCACATAT+AGG | - | chr1_3:40634328-40634347 | Msa0118270:intron | 25.0% |
| !!! | TGAAATACCCTTTTTTAATG+TGG | - | chr1_3:40634404-40634423 | Msa0118270:intron | 25.0% |
| ! | CTCTTAAACCACATTAAAAA+AGG | + | chr1_3:40634415-40634434 | None:intergenic | 25.0% |
| !!! | CTTTTTTAATGTGGTTTAAG+AGG | - | chr1_3:40634413-40634432 | Msa0118270:intron | 25.0% |
| ! | CTAAGAAATACCATAAAAAC+TGG | - | chr1_3:40634552-40634571 | Msa0118270:intron | 25.0% |
| !!! | TTTGTATTTTGATGAGATAG+TGG | - | chr1_3:40634741-40634760 | Msa0118270:five_prime_UTR | 25.0% |
| !!! | TTTTAAAACCAACAACAACG+CGG | - | chr1_3:40631113-40631132 | Msa0118270:three_prime_UTR | 30.0% |
| ! | ACACGTTGTTTCATTCATTT+CGG | - | chr1_3:40631214-40631233 | Msa0118270:three_prime_UTR | 30.0% |
| TGTGTTCTTGTGAAAGAAAA+TGG | - | chr1_3:40631449-40631468 | Msa0118270:intron | 30.0% | |
| ! | TAGATCTCATTTTCTACGTT+TGG | - | chr1_3:40631504-40631523 | Msa0118270:intron | 30.0% |
| GTGCAGTAATCAATAAACAA+TGG | - | chr1_3:40631602-40631621 | Msa0118270:intron | 30.0% | |
| TCAAATAAGATCAACAAGGT+TGG | + | chr1_3:40631696-40631715 | None:intergenic | 30.0% | |
| !! | AGGTAAAGGTTTTTCGAAAA+AGG | - | chr1_3:40631718-40631737 | Msa0118270:intron | 30.0% |
| TCTTGTAATCTAGTAGTACA+TGG | - | chr1_3:40632066-40632085 | Msa0118270:CDS | 30.0% | |
| TTCTGTAATCAAGTACTACT+TGG | - | chr1_3:40632205-40632224 | Msa0118270:CDS | 30.0% | |
| ! | TGTTTTATATAATTGCAGGC+TGG | - | chr1_3:40632236-40632255 | Msa0118270:CDS | 30.0% |
| TGATGAAGCTCAATCAAAAA+GGG | - | chr1_3:40632364-40632383 | Msa0118270:CDS | 30.0% | |
| TAACAATTCCATGCTCAATT+GGG | + | chr1_3:40632409-40632428 | None:intergenic | 30.0% | |
| ! | ATATCGATTGTACAATTTGC+AGG | - | chr1_3:40632891-40632910 | Msa0118270:intron | 30.0% |
| TGCAGGAATTAATAATGTCA+TGG | - | chr1_3:40632908-40632927 | Msa0118270:intron | 30.0% | |
| ! | CGTCGTTTATATCTTGTTAT+AGG | - | chr1_3:40633394-40633413 | Msa0118270:CDS | 30.0% |
| ! | ATAGGTATTGTTCTTGATTC+TGG | - | chr1_3:40633412-40633431 | Msa0118270:CDS | 30.0% |
| TTCATAATCAAGAGCTATGT+AGG | + | chr1_3:40633620-40633639 | None:intergenic | 30.0% | |
| !! | TATGTTGTTTCATGTATACC+AGG | + | chr1_3:40633784-40633803 | None:intergenic | 30.0% |
| GATATTAGAAAGGATCTCTA+TGG | - | chr1_3:40633829-40633848 | Msa0118270:intron | 30.0% | |
| ACCAAGTAGCATGAAAATTA+AGG | - | chr1_3:40633930-40633949 | Msa0118270:intron | 30.0% | |
| ! | ACCTTAATTTTCATGCTACT+TGG | + | chr1_3:40633934-40633953 | None:intergenic | 30.0% |
| AAGTAGCATGAAAATTAAGG+TGG | - | chr1_3:40633933-40633952 | Msa0118270:intron | 30.0% | |
| ! | TAATAGTCAACAAGCTTGTT+TGG | - | chr1_3:40634112-40634131 | Msa0118270:intron | 30.0% |
| GATAAGCACTTATGCTATAA+GGG | - | chr1_3:40634350-40634369 | Msa0118270:intron | 30.0% | |
| ATTTCCTGTGAACAATTGAA+GGG | + | chr1_3:40634504-40634523 | None:intergenic | 30.0% | |
| AATACCATAAAAACTGGTTG+AGG | - | chr1_3:40634558-40634577 | Msa0118270:intron | 30.0% | |
| TATTTATATGTTGGGATGAG+AGG | - | chr1_3:40634640-40634659 | Msa0118270:five_prime_UTR | 30.0% | |
| ! | TTTAAAACCAACAACAACGC+GGG | - | chr1_3:40631114-40631133 | Msa0118270:three_prime_UTR | 35.0% |
| TTTAACGAACATGTCTTGTG+TGG | + | chr1_3:40631148-40631167 | None:intergenic | 35.0% | |
| CATTCATTTCGGAGATTCTA+AGG | - | chr1_3:40631225-40631244 | Msa0118270:three_prime_UTR | 35.0% | |
| ! | CAACCTCTTGTTTGTGATAA+TGG | - | chr1_3:40631642-40631661 | Msa0118270:intron | 35.0% |
| GTTCCATTATCACAAACAAG+AGG | + | chr1_3:40631648-40631667 | None:intergenic | 35.0% | |
| !! | CTTGTTTGTGATAATGGAAC+TGG | - | chr1_3:40631648-40631667 | Msa0118270:intron | 35.0% |
| !! | TTGTGATAATGGAACTGGAA+TGG | - | chr1_3:40631653-40631672 | Msa0118270:intron | 35.0% |
| ATAAGATCAACAAGGTTGGA+TGG | + | chr1_3:40631692-40631711 | None:intergenic | 35.0% | |
| GTGATGAAGCTCAATCAAAA+AGG | - | chr1_3:40632363-40632382 | Msa0118270:CDS | 35.0% | |
| GATGAAGCTCAATCAAAAAG+GGG | - | chr1_3:40632365-40632384 | Msa0118270:CDS | 35.0% | |
| CTAACAATTCCATGCTCAAT+TGG | + | chr1_3:40632410-40632429 | None:intergenic | 35.0% | |
| AGCATGGAATTGTTAGTAAC+TGG | - | chr1_3:40632414-40632433 | Msa0118270:intron | 35.0% | |
| GCATGGAATTGTTAGTAACT+GGG | - | chr1_3:40632415-40632434 | Msa0118270:intron | 35.0% | |
| TGTTAGTAACTGGGATGATA+TGG | - | chr1_3:40632424-40632443 | Msa0118270:intron | 35.0% | |
| !!! | ATTTTCTCACGATTAGCCTT+TGG | + | chr1_3:40632536-40632555 | None:intergenic | 35.0% |
| AAAGTGGCGTATTCAAAACA+CGG | - | chr1_3:40632702-40632721 | Msa0118270:intron | 35.0% | |
| TATTCAAAACACGGGATCAT+TGG | - | chr1_3:40632711-40632730 | Msa0118270:intron | 35.0% | |
| ATTCAAAACACGGGATCATT+GGG | - | chr1_3:40632712-40632731 | Msa0118270:intron | 35.0% | |
| AATGATAGAAAGGAATGCAG+CGG | - | chr1_3:40632990-40633009 | Msa0118270:intron | 35.0% | |
| ! | TGTTTGAAATACGAAGCACT+TGG | - | chr1_3:40633035-40633054 | Msa0118270:intron | 35.0% |
| ! | AGTTTTCTTCCTGCAATATG+TGG | - | chr1_3:40633181-40633200 | Msa0118270:intron | 35.0% |
| GTTATGGATGAAAGTGAAAC+TGG | - | chr1_3:40633203-40633222 | Msa0118270:CDS | 35.0% | |
| ! | AAAGAATGGTGCCAAGTTAT+AGG | + | chr1_3:40633229-40633248 | None:intergenic | 35.0% |
| ! | ATTGTTCTTGATTCTGGAGA+TGG | - | chr1_3:40633418-40633437 | Msa0118270:CDS | 35.0% |
| ! | CTCGGTTAAGATTTTCATGA+GGG | + | chr1_3:40633533-40633552 | None:intergenic | 35.0% |
| GTGTGATGTCGATATTAGAA+AGG | - | chr1_3:40633819-40633838 | Msa0118270:intron | 35.0% | |
| TATGGAAACATCGTATTGAG+TGG | - | chr1_3:40633847-40633866 | Msa0118270:intron | 35.0% | |
| GGATAAGCACTTATGCTATA+AGG | - | chr1_3:40634349-40634368 | Msa0118270:intron | 35.0% | |
| CATCTGCATTAGGAAAGAAA+AGG | + | chr1_3:40634449-40634468 | None:intergenic | 35.0% | |
| TTTCTTTCCTAATGCAGATG+TGG | - | chr1_3:40634449-40634468 | Msa0118270:intron | 35.0% | |
| AAGGCTGAATATGATGAATC+AGG | - | chr1_3:40634478-40634497 | Msa0118270:intron | 35.0% | |
| CATTTCCTGTGAACAATTGA+AGG | + | chr1_3:40634505-40634524 | None:intergenic | 35.0% | |
| ! | AGATCCTCAACCAGTTTTTA+TGG | + | chr1_3:40634565-40634584 | None:intergenic | 35.0% |
| GCTATGTATTGTGACTGATT+TGG | - | chr1_3:40634718-40634737 | Msa0118270:five_prime_UTR | 35.0% | |
| ! | GATGAGATAGTGGTATGTAT+TGG | - | chr1_3:40634751-40634770 | Msa0118270:five_prime_UTR | 35.0% |
| TAATGGAACTGGAATGGTCA+AGG | - | chr1_3:40631659-40631678 | Msa0118270:intron | 40.0% | |
| AATACTACGATGTCGCAATC+AGG | + | chr1_3:40631746-40631765 | None:intergenic | 40.0% | |
| GGACAAAAGGATGCATATGT+TGG | - | chr1_3:40632341-40632360 | Msa0118270:CDS | 40.0% | |
| ! | CTAAAGTACCCAATTGAGCA+TGG | - | chr1_3:40632398-40632417 | Msa0118270:CDS | 40.0% |
| GGGATGATATGGAAAAGATC+TGG | - | chr1_3:40632435-40632454 | Msa0118270:intron | 40.0% | |
| TGGTGCTTCAGTTAGAAGAA+CGG | + | chr1_3:40632507-40632526 | None:intergenic | 40.0% | |
| ! | TGAAGCACCACTTAATCCAA+AGG | - | chr1_3:40632517-40632536 | Msa0118270:intron | 40.0% |
| !! | CGATTAGCCTTTGGATTAAG+TGG | + | chr1_3:40632527-40632546 | None:intergenic | 40.0% |
| !! | ATACATAGCTGGAGCATTGA+AGG | + | chr1_3:40632579-40632598 | None:intergenic | 40.0% |
| TGAATGGCAACATACATAGC+TGG | + | chr1_3:40632590-40632609 | None:intergenic | 40.0% | |
| AGCTATGTATGTTGCCATTC+AGG | - | chr1_3:40632589-40632608 | Msa0118270:intron | 40.0% | |
| ACTAGCATAAAGCGAAAGCA+CGG | + | chr1_3:40632615-40632634 | None:intergenic | 40.0% | |
| AAGTGGCGTATTCAAAACAC+GGG | - | chr1_3:40632703-40632722 | Msa0118270:intron | 40.0% | |
| TTCAAAACACGGGATCATTG+GGG | - | chr1_3:40632713-40632732 | Msa0118270:intron | 40.0% | |
| CTTCCTGCAATATGTGGTTA+TGG | - | chr1_3:40633187-40633206 | Msa0118270:intron | 40.0% | |
| CATCCATAACCACATATTGC+AGG | + | chr1_3:40633193-40633212 | None:intergenic | 40.0% | |
| ! | AGTGAAACTGGCCTATAACT+TGG | - | chr1_3:40633215-40633234 | Msa0118270:CDS | 40.0% |
| CAAGTTCTTTAAGCTACGCA+TGG | + | chr1_3:40633338-40633357 | None:intergenic | 40.0% | |
| CTTCATAGATAGGAACTGTG+TGG | + | chr1_3:40633450-40633469 | None:intergenic | 40.0% | |
| CACACAGTTCCTATCTATGA+AGG | - | chr1_3:40633448-40633467 | Msa0118270:CDS | 40.0% | |
| AGGGCATATCCTTCATAGAT+AGG | + | chr1_3:40633460-40633479 | None:intergenic | 40.0% | |
| ! | GCTCGGTTAAGATTTTCATG+AGG | + | chr1_3:40633534-40633553 | None:intergenic | 40.0% |
| ATGAAAATCTTAACCGAGCG+TGG | - | chr1_3:40633535-40633554 | Msa0118270:CDS | 40.0% | |
| AAGAGCTATGAGTTACCTGA+TGG | - | chr1_3:40633679-40633698 | Msa0118270:intron | 40.0% | |
| ! | AGGAAGTATAGTGTCTGGAT+TGG | - | chr1_3:40633970-40633989 | Msa0118270:intron | 40.0% |
| ! | AAGTATAGTGTCTGGATTGG+AGG | - | chr1_3:40633973-40633992 | Msa0118270:intron | 40.0% |
| AAGTCATGCACTATACCTGT+TGG | + | chr1_3:40634026-40634045 | None:intergenic | 40.0% | |
| GGGTATTTCAAACACATGTC+TGG | + | chr1_3:40634394-40634413 | None:intergenic | 40.0% | |
| TTGCAATCCACATCTGCATT+AGG | + | chr1_3:40634459-40634478 | None:intergenic | 40.0% | |
| ! | AATGCAGATGTGGATTGCAA+AGG | - | chr1_3:40634459-40634478 | Msa0118270:intron | 40.0% |
| GTTCACAGGAAATGCTTCTA+AGG | - | chr1_3:40634511-40634530 | Msa0118270:intron | 40.0% | |
| GAACATGTCTTGTGTGGTTG+AGG | + | chr1_3:40631142-40631161 | None:intergenic | 45.0% | |
| GAACTGGAATGGTCAAGGTA+TGG | - | chr1_3:40631664-40631683 | Msa0118270:intron | 45.0% | |
| ATACTATGATGTCGCTGTCG+CGG | + | chr1_3:40631797-40631816 | None:intergenic | 45.0% | |
| ATCACAAGTGACCGCAATTC+TGG | - | chr1_3:40631835-40631854 | Msa0118270:CDS | 45.0% | |
| TTCATGTAGCTAACCCCACT+TGG | - | chr1_3:40632012-40632031 | Msa0118270:CDS | 45.0% | |
| TAATTGCAGGCTGGATTTGC+CGG | - | chr1_3:40632245-40632264 | Msa0118270:CDS | 45.0% | |
| GTGGACGACCTACAATACTT+GGG | + | chr1_3:40632295-40632314 | None:intergenic | 45.0% | |
| ! | ACTGGTGTGATGGTTGGTAT+GGG | - | chr1_3:40632320-40632339 | Msa0118270:CDS | 45.0% |
| ! | GATGGTTGGTATGGGACAAA+AGG | - | chr1_3:40632328-40632347 | Msa0118270:CDS | 45.0% |
| AGAAGAACGGGATGTTCTTC+AGG | + | chr1_3:40632494-40632513 | None:intergenic | 45.0% | |
| GGTGCTTCAGTTAGAAGAAC+GGG | + | chr1_3:40632506-40632525 | None:intergenic | 45.0% | |
| GTGCTTTCGCTTTATGCTAG+TGG | - | chr1_3:40632614-40632633 | Msa0118270:intron | 45.0% | |
| TATGCTAGTGGTCGTACAAC+CGG | - | chr1_3:40632626-40632645 | Msa0118270:intron | 45.0% | |
| CACTGTGTCAAGGTCATTTG+TGG | + | chr1_3:40633074-40633093 | None:intergenic | 45.0% | |
| ACACAGACGCTAACACATGT+CGG | - | chr1_3:40633096-40633115 | Msa0118270:intron | 45.0% | |
| AGTACGGACACATAAGATCG+TGG | + | chr1_3:40633134-40633153 | None:intergenic | 45.0% | |
| TGAAATCGTGAGAGACGTGA+AGG | - | chr1_3:40633585-40633604 | Msa0118270:intron | 45.0% | |
| AGAAACCTCAAAGACGAGCT+CGG | - | chr1_3:40633648-40633667 | Msa0118270:intron | 45.0% | |
| ! | CTATGAGTTACCTGATGGAC+AGG | - | chr1_3:40633684-40633703 | Msa0118270:intron | 45.0% |
| ATTGTGATCACCTGTCCATC+AGG | + | chr1_3:40633697-40633716 | None:intergenic | 45.0% | |
| GATGGACAGGTGATCACAAT+AGG | - | chr1_3:40633697-40633716 | Msa0118270:intron | 45.0% | |
| TTCAGGACAACGGAAACGTT+CGG | + | chr1_3:40633725-40633744 | None:intergenic | 45.0% | |
| !! | GGAAGAGTACTTCAGGACAA+CGG | + | chr1_3:40633735-40633754 | None:intergenic | 45.0% |
| GCTTCCATACCAATCATGGA+TGG | + | chr1_3:40633760-40633779 | None:intergenic | 45.0% | |
| AGGAGCTTCCATACCAATCA+TGG | + | chr1_3:40633764-40633783 | None:intergenic | 45.0% | |
| ATGATTGGTATGGAAGCTCC+TGG | - | chr1_3:40633763-40633782 | Msa0118270:intron | 45.0% | |
| GGAAACATCGTATTGAGTGG+TGG | - | chr1_3:40633850-40633869 | Msa0118270:intron | 45.0% | |
| CATTGCTGATAGGATGAGCA+AGG | - | chr1_3:40633891-40633910 | Msa0118270:intron | 45.0% | |
| ACACTATACTTCCTCTCTGG+TGG | + | chr1_3:40633964-40633983 | None:intergenic | 45.0% | |
| CAGACACTATACTTCCTCTC+TGG | + | chr1_3:40633967-40633986 | None:intergenic | 45.0% | |
| ! | CAGAGAGGAAGTATAGTGTC+TGG | - | chr1_3:40633965-40633984 | Msa0118270:intron | 45.0% |
| CATGCACTATACCTGTTGGA+AGG | + | chr1_3:40634022-40634041 | None:intergenic | 45.0% | |
| AGCTGATGCAGCCAGAATTG+CGG | + | chr1_3:40631849-40631868 | None:intergenic | 50.0% | |
| ATGTAGCTAACCCCACTTGG+TGG | - | chr1_3:40632015-40632034 | Msa0118270:CDS | 50.0% | |
| TGTAGCTAACCCCACTTGGT+GGG | - | chr1_3:40632016-40632035 | Msa0118270:CDS | 50.0% | |
| ! | TAACCCCACTTGGTGGGATA+AGG | - | chr1_3:40632022-40632041 | Msa0118270:CDS | 50.0% |
| ! | AAGCCTTATCCCACCAAGTG+GGG | + | chr1_3:40632028-40632047 | None:intergenic | 50.0% |
| ! | CAAGCCTTATCCCACCAAGT+GGG | + | chr1_3:40632029-40632048 | None:intergenic | 50.0% |
| ! | TCAAGCCTTATCCCACCAAG+TGG | + | chr1_3:40632030-40632049 | None:intergenic | 50.0% |
| AATTGCGATCCTTGCGAGTC+TGG | - | chr1_3:40632128-40632147 | Msa0118270:CDS | 50.0% | |
| ATTGCGATCCTTGCGAGTCT+GGG | - | chr1_3:40632129-40632148 | Msa0118270:CDS | 50.0% | |
| GAGTCTGGGGAATTGGAACA+CGG | - | chr1_3:40632143-40632162 | Msa0118270:CDS | 50.0% | |
| ATACTTGGGAACACCGCTCT+TGG | + | chr1_3:40632281-40632300 | None:intergenic | 50.0% | |
| ! | GCGGTGTTCCCAAGTATTGT+AGG | - | chr1_3:40632284-40632303 | Msa0118270:CDS | 50.0% |
| CGTGGACGACCTACAATACT+TGG | + | chr1_3:40632296-40632315 | None:intergenic | 50.0% | |
| TACCAACCATCACACCAGTG+TGG | + | chr1_3:40632319-40632338 | None:intergenic | 50.0% | |
| ! | CACTGGTGTGATGGTTGGTA+TGG | - | chr1_3:40632319-40632338 | Msa0118270:CDS | 50.0% |
| GGAATGCAGCGGAGTGAAAT+AGG | - | chr1_3:40633001-40633020 | Msa0118270:intron | 50.0% | |
| ! | GTCTGTGTGTCACTGTGTCA+AGG | + | chr1_3:40633084-40633103 | None:intergenic | 50.0% |
| ATCCTGCGTTTGGATCTTGC+AGG | - | chr1_3:40633490-40633509 | Msa0118270:CDS | 50.0% | |
| !! | GGTGAAAGAGTATCCACGCT+CGG | + | chr1_3:40633551-40633570 | None:intergenic | 50.0% |
| GTCTCTCACGATTTCACGCT+CGG | + | chr1_3:40633581-40633600 | None:intergenic | 50.0% | |
| !! | GATGGCTGGAAGAGTACTTC+AGG | + | chr1_3:40633742-40633761 | None:intergenic | 50.0% |
| CTCTTCCAGCCATCCATGAT+TGG | - | chr1_3:40633748-40633767 | Msa0118270:intron | 50.0% | |
| CCATACCAATCATGGATGGC+TGG | + | chr1_3:40633756-40633775 | None:intergenic | 50.0% | |
| CCAGCCATCCATGATTGGTA+TGG | - | chr1_3:40633753-40633772 | Msa0118270:intron | 50.0% | |
| TCATCCTATCAGCAATGCCG+GGG | + | chr1_3:40633888-40633907 | None:intergenic | 50.0% | |
| CTCATCCTATCAGCAATGCC+GGG | + | chr1_3:40633889-40633908 | None:intergenic | 50.0% | |
| GCTCATCCTATCAGCAATGC+CGG | + | chr1_3:40633890-40633909 | None:intergenic | 50.0% | |
| GAGCAAGGAGATCACAGCAT+TGG | - | chr1_3:40633906-40633925 | Msa0118270:intron | 50.0% | |
| !! | CTGGATTGGAGGCTCCATTT+TGG | - | chr1_3:40633984-40634003 | Msa0118270:intron | 50.0% |
| !! | TACCTGTTGGAAGGTGCTGA+GGG | + | chr1_3:40634013-40634032 | None:intergenic | 50.0% |
| !! | ATACCTGTTGGAAGGTGCTG+AGG | + | chr1_3:40634014-40634033 | None:intergenic | 50.0% |
| CAGGCCCTTCAATTGTTCAC+AGG | - | chr1_3:40634497-40634516 | Msa0118270:intron | 50.0% | |
| ! | TGAGGTACCCGCGTTGTTGT+TGG | + | chr1_3:40631124-40631143 | None:intergenic | 55.0% |
| GCTGCATTTGACTGCGAGTC+TGG | - | chr1_3:40631866-40631885 | Msa0118270:CDS | 55.0% | |
| TTGCGATCCTTGCGAGTCTG+GGG | - | chr1_3:40632130-40632149 | Msa0118270:CDS | 55.0% | |
| TCCTTGCGAGTCTGGGGAAT+TGG | - | chr1_3:40632136-40632155 | Msa0118270:CDS | 55.0% | |
| TCCAATTCCCCAGACTCGCA+AGG | + | chr1_3:40632140-40632159 | None:intergenic | 55.0% | |
| ! | CGCTCTTGGTGCATCATCTC+CGG | + | chr1_3:40632267-40632286 | None:intergenic | 55.0% |
| CGGAGATGATGCACCAAGAG+CGG | - | chr1_3:40632265-40632284 | Msa0118270:CDS | 55.0% | |
| ! | AAGCGAAAGCACGGCCTGAA+TGG | + | chr1_3:40632606-40632625 | None:intergenic | 55.0% |
| ACGCAGGATTGCGTGTGGAA+GGG | + | chr1_3:40633479-40633498 | None:intergenic | 55.0% | |
| AACGCAGGATTGCGTGTGGA+AGG | + | chr1_3:40633480-40633499 | None:intergenic | 55.0% | |
| TCCACACGCAATCCTGCGTT+TGG | - | chr1_3:40633480-40633499 | Msa0118270:CDS | 55.0% | |
| TCCAAACGCAGGATTGCGTG+TGG | + | chr1_3:40633484-40633503 | None:intergenic | 55.0% | |
| GACCTGCAAGATCCAAACGC+AGG | + | chr1_3:40633495-40633514 | None:intergenic | 55.0% | |
| GATTTCACGCTCGGCTGTTG+TGG | + | chr1_3:40633572-40633591 | None:intergenic | 55.0% | |
| AACAGCCGAGCTCGTCTTTG+AGG | + | chr1_3:40633656-40633675 | None:intergenic | 55.0% | |
| GGTGGTACGACTATGTTCCC+CGG | - | chr1_3:40633868-40633887 | Msa0118270:intron | 55.0% | |
| TGTTCCCCGGCATTGCTGAT+AGG | - | chr1_3:40633881-40633900 | Msa0118270:intron | 55.0% | |
| ! | GGTGCTGAGGGAAGCCAAAA+TGG | + | chr1_3:40634001-40634020 | None:intergenic | 55.0% |
| TTCCCTCAGCACCTTCCAAC+AGG | - | chr1_3:40634008-40634027 | Msa0118270:intron | 55.0% | |
| TCGTGGCAGCAGTCATGTCG+CGG | + | chr1_3:40631896-40631915 | None:intergenic | 60.0% | |
| TCCACGCCACACTGGTGTGA+TGG | - | chr1_3:40632310-40632329 | Msa0118270:CDS | 60.0% | |
| ACCATCACACCAGTGTGGCG+TGG | + | chr1_3:40632314-40632333 | None:intergenic | 60.0% | |
| CGCCACACTGGTGTGATGGT+TGG | - | chr1_3:40632314-40632333 | Msa0118270:CDS | 60.0% | |
| AGGTGGTTGCACCACCAGAG+AGG | - | chr1_3:40633950-40633969 | Msa0118270:intron | 60.0% | |
| GTAGGTCGTCCACGCCACAC+TGG | - | chr1_3:40632302-40632321 | Msa0118270:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 40631027 | 40634812 | 40631027 | ID=Msa0118270;Name=Msa0118270 |
| chr1_3 | mRNA | 40631027 | 40634812 | 40631027 | ID=Msa0118270-mRNA-1;Parent=Msa0118270;Name=Msa0118270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=233|1|1|1|0.75|0.6|5|281|377 |
| chr1_3 | exon | 40631027 | 40631373 | 40631027 | ID=Msa0118270-mRNA-1:exon:12427;Parent=Msa0118270-mRNA-1 |
| chr1_3 | exon | 40631810 | 40632423 | 40631810 | ID=Msa0118270-mRNA-1:exon:12426;Parent=Msa0118270-mRNA-1 |
| chr1_3 | exon | 40633192 | 40633585 | 40633192 | ID=Msa0118270-mRNA-1:exon:12425;Parent=Msa0118270-mRNA-1 |
| chr1_3 | exon | 40634159 | 40634231 | 40634159 | ID=Msa0118270-mRNA-1:exon:12424;Parent=Msa0118270-mRNA-1 |
| chr1_3 | exon | 40634593 | 40634812 | 40634593 | ID=Msa0118270-mRNA-1:exon:12423;Parent=Msa0118270-mRNA-1 |
| chr1_3 | five_prime_UTR | 40634593 | 40634812 | 40634593 | ID=Msa0118270-mRNA-1:five_prime_utr;Parent=Msa0118270-mRNA-1 |
| chr1_3 | five_prime_UTR | 40634219 | 40634231 | 40634219 | ID=Msa0118270-mRNA-1:five_prime_utr;Parent=Msa0118270-mRNA-1 |
| chr1_3 | CDS | 40634159 | 40634218 | 40634159 | ID=Msa0118270-mRNA-1:cds;Parent=Msa0118270-mRNA-1 |
| chr1_3 | CDS | 40633192 | 40633585 | 40633192 | ID=Msa0118270-mRNA-1:cds;Parent=Msa0118270-mRNA-1 |
| chr1_3 | CDS | 40631810 | 40632423 | 40631810 | ID=Msa0118270-mRNA-1:cds;Parent=Msa0118270-mRNA-1 |
| chr1_3 | CDS | 40631308 | 40631373 | 40631308 | ID=Msa0118270-mRNA-1:cds;Parent=Msa0118270-mRNA-1 |
| chr1_3 | three_prime_UTR | 40631027 | 40631307 | 40631027 | ID=Msa0118270-mRNA-1:three_prime_utr;Parent=Msa0118270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
