Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161400 | XP_013443410.1 | 99.735 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161400 | sp|O81221|ACT_GOSHI | 98.143 | 377 | 7 | 0 | 1 | 377 | 1 | 377 | 0.0 | 774 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161400 | B7FIH3 | 99.735 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022260 | Msa0161400 | 0.946334 | 5.628793e-105 | -8.615850e-47 |
| Msa0062340 | Msa0161400 | 0.805434 | 1.337644e-49 | -8.615850e-47 |
| Msa0077560 | Msa0161400 | 0.846678 | 1.867536e-59 | -8.615850e-47 |
| Msa0118270 | Msa0161400 | 0.998796 | 6.337358e-277 | -8.615850e-47 |
| Msa0125360 | Msa0161400 | 0.803976 | 2.695099e-49 | -8.615850e-47 |
| Msa0161400 | Msa0164290 | 0.897720 | 1.069140e-76 | -8.615850e-47 |
| Msa0161400 | Msa0183710 | 0.801955 | 7.051411e-49 | -8.615850e-47 |
| Msa0161400 | Msa0204950 | 0.818636 | 1.767778e-52 | -8.615850e-47 |
| Msa0161400 | Msa0249850 | 0.806955 | 6.398507e-50 | -8.615850e-47 |
| Msa0161400 | Msa0269210 | 0.831175 | 1.937392e-55 | -8.615850e-47 |
| Msa0161400 | Msa0281470 | 0.814298 | 1.654169e-51 | -8.615850e-47 |
| Msa0161400 | Msa0307270 | 0.821544 | 3.816063e-53 | -8.615850e-47 |
| Msa0161400 | Msa0320600 | 0.822060 | 2.898690e-53 | -8.615850e-47 |
| Msa0161400 | Msa0354840 | 0.842703 | 2.198807e-58 | -8.615850e-47 |
| Msa0161400 | Msa0375640 | 0.808354 | 3.226852e-50 | -8.615850e-47 |
| Msa0161400 | Msa0424160 | 0.814186 | 1.751169e-51 | -8.615850e-47 |
| Msa0161400 | Msa0437480 | 0.817390 | 3.379888e-52 | -8.615850e-47 |
| Msa0161400 | Msa0440350 | 0.854485 | 1.192959e-61 | -8.615850e-47 |
| Msa0161400 | Msa0481890 | 0.812758 | 3.609113e-51 | -8.615850e-47 |
| Msa0161400 | Msa0484210 | -0.813070 | 3.083730e-51 | -8.615850e-47 |
| Msa0161400 | Msa0495300 | 0.812168 | 4.855146e-51 | -8.615850e-47 |
| Msa0161400 | Msa0502510 | 0.813863 | 2.063971e-51 | -8.615850e-47 |
| Msa0161400 | Msa0519760 | 0.832232 | 1.063253e-55 | -8.615850e-47 |
| Msa0161400 | Msa0519810 | 0.840456 | 8.601928e-58 | -8.615850e-47 |
| Msa0161400 | Msa0519840 | 0.833617 | 4.810756e-56 | -8.615850e-47 |
| Msa0161400 | Msa0553750 | 0.800201 | 1.610561e-48 | -8.615850e-47 |
| Msa0161400 | Msa0574900 | 0.812328 | 4.480197e-51 | -8.615850e-47 |
| Msa0161400 | Msa0607800 | 0.820359 | 7.150584e-53 | -8.615850e-47 |
| Msa0161400 | Msa0648040 | 0.816611 | 5.057797e-52 | -8.615850e-47 |
| Msa0161400 | Msa0692790 | 0.819311 | 1.241438e-52 | -8.615850e-47 |
| Msa0161400 | Msa0709440 | 0.812268 | 4.617317e-51 | -8.615850e-47 |
| Msa0161400 | Msa0716890 | 0.844554 | 7.035191e-59 | -8.615850e-47 |
| Msa0161400 | Msa0754430 | 0.805178 | 1.512959e-49 | -8.615850e-47 |
| Msa0161400 | Msa0754450 | 0.805177 | 1.513651e-49 | -8.615850e-47 |
| Msa0161400 | Msa0756330 | 0.817714 | 2.857802e-52 | -8.615850e-47 |
| Msa0161400 | Msa0758030 | 0.841467 | 4.670134e-58 | -8.615850e-47 |
| Msa0161400 | Msa0837710 | 0.807265 | 5.499928e-50 | -8.615850e-47 |
| Msa0161400 | Msa0838620 | -0.809303 | 2.023098e-50 | -8.615850e-47 |
| Msa0161400 | Msa1072940 | 0.823166 | 1.603401e-53 | -8.615850e-47 |
| Msa0161400 | Msa1084530 | 0.812658 | 3.795932e-51 | -8.615850e-47 |
| Msa0161400 | Msa1104110 | 0.803892 | 2.805620e-49 | -8.615850e-47 |
| Msa0161400 | Msa1125820 | 0.811457 | 6.935767e-51 | -8.615850e-47 |
| Msa0161400 | Msa1125990 | 0.811470 | 6.888410e-51 | -8.615850e-47 |
| Msa0161400 | Msa1132990 | 0.805163 | 1.524406e-49 | -8.615850e-47 |
| Msa0161400 | Msa1160920 | 0.812450 | 4.214343e-51 | -8.615850e-47 |
| Msa0161400 | Msa1171290 | 0.812647 | 3.816090e-51 | -8.615850e-47 |
| Msa0161400 | Msa1216980 | 0.816421 | 5.579158e-52 | -8.615850e-47 |
| Msa0161400 | Msa1257720 | 0.804762 | 1.848623e-49 | -8.615850e-47 |
| Msa0161400 | Msa1262670 | 0.801926 | 7.149433e-49 | -8.615850e-47 |
| Msa0161400 | Msa1305250 | 0.803911 | 2.781209e-49 | -8.615850e-47 |
| Msa0161400 | Msa1366150 | 0.814678 | 1.363438e-51 | -8.615850e-47 |
| Msa0161400 | Msa1384150 | 0.804461 | 2.136934e-49 | -8.615850e-47 |
| Msa0161400 | Msa1387440 | 0.832762 | 7.854034e-56 | -8.615850e-47 |
| Msa0161400 | Msa1427110 | 0.820707 | 5.948705e-53 | -8.615850e-47 |
| Msa0161400 | Msa1450520 | 0.805082 | 1.584788e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161400 | MtrunA17_Chr1g0175391 | 99.735 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 0.0 | 782 |
| Msa0161400 | MtrunA17_Chr2g0328091 | 98.408 | 377 | 6 | 0 | 1 | 377 | 1 | 377 | 0.0 | 775 |
| Msa0161400 | MtrunA17_Chr7g0258721 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 770 |
| Msa0161400 | MtrunA17_Chr6g0448881 | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 769 |
| Msa0161400 | MtrunA17_Chr7g0223901 | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 766 |
| Msa0161400 | MtrunA17_Chr3g0129641 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0161400 | MtrunA17_Chr2g0278591 | 93.634 | 377 | 24 | 0 | 1 | 377 | 1 | 377 | 0.0 | 749 |
| Msa0161400 | MtrunA17_Chr7g0224401 | 43.272 | 379 | 201 | 3 | 10 | 374 | 7 | 385 | 5.64e-120 | 352 |
| Msa0161400 | MtrunA17_Chr5g0427591 | 37.892 | 446 | 204 | 11 | 1 | 376 | 1 | 443 | 3.85e-94 | 288 |
| Msa0161400 | MtrunA17_Chr8g0361001 | 37.892 | 446 | 204 | 11 | 1 | 376 | 1 | 443 | 5.74e-94 | 288 |
| Msa0161400 | MtrunA17_Chr8g0381261 | 34.550 | 411 | 219 | 8 | 10 | 372 | 10 | 418 | 9.19e-72 | 230 |
| Msa0161400 | MtrunA17_Chr3g0089031 | 37.766 | 376 | 208 | 9 | 11 | 377 | 5 | 363 | 3.62e-68 | 219 |
| Msa0161400 | MtrunA17_Chr2g0305361 | 27.650 | 434 | 248 | 7 | 8 | 377 | 6 | 437 | 1.45e-56 | 191 |
| Msa0161400 | MtrunA17_Chr3g0080021 | 30.640 | 297 | 182 | 9 | 91 | 371 | 179 | 467 | 3.96e-40 | 148 |
| Msa0161400 | MtrunA17_Chr8g0369101 | 31.399 | 293 | 174 | 10 | 91 | 366 | 187 | 469 | 9.62e-36 | 136 |
| Msa0161400 | MtrunA17_Chr3g0111971 | 29.365 | 252 | 159 | 7 | 9 | 245 | 21 | 268 | 2.28e-22 | 99.0 |
| Msa0161400 | MtrunA17_Chr3g0111971 | 33.607 | 122 | 78 | 2 | 250 | 368 | 586 | 707 | 1.63e-15 | 78.2 |
| Msa0161400 | MtrunA17_Chr8g0336071 | 41.053 | 95 | 56 | 0 | 105 | 199 | 1 | 95 | 9.90e-20 | 83.2 |
| Msa0161400 | MtrunA17_Chr8g0336061 | 41.304 | 92 | 41 | 1 | 241 | 319 | 12 | 103 | 5.45e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161400 | AT3G53750.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0161400 | AT3G53750.2 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0161400 | AT2G37620.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0161400 | AT2G37620.3 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0161400 | AT2G37620.2 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0161400 | AT2G37620.4 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0161400 | AT3G46520.2 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0161400 | AT3G46520.1 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0161400 | AT5G09810.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0161400 | AT3G12110.1 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0161400 | AT5G59370.2 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0161400 | AT5G59370.1 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0161400 | AT3G18780.2 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 746 |
| Msa0161400 | AT3G18780.3 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 746 |
| Msa0161400 | AT1G49240.1 | 92.573 | 377 | 28 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0161400 | AT3G18780.1 | 92.758 | 359 | 26 | 0 | 1 | 359 | 1 | 359 | 0.0 | 705 |
| Msa0161400 | AT2G42100.1 | 84.783 | 368 | 56 | 0 | 10 | 377 | 11 | 378 | 0.0 | 676 |
| Msa0161400 | AT2G42090.1 | 70.541 | 370 | 104 | 1 | 7 | 376 | 1 | 365 | 0.0 | 566 |
| Msa0161400 | AT2G42170.1 | 78.012 | 332 | 70 | 1 | 46 | 377 | 1 | 329 | 0.0 | 558 |
| Msa0161400 | AT2G42170.3 | 78.012 | 332 | 70 | 1 | 46 | 377 | 1 | 329 | 0.0 | 558 |
| Msa0161400 | AT2G42170.4 | 77.885 | 312 | 66 | 1 | 46 | 357 | 1 | 309 | 0.0 | 521 |
| Msa0161400 | AT2G42170.2 | 77.885 | 312 | 66 | 1 | 46 | 357 | 1 | 309 | 0.0 | 521 |
| Msa0161400 | AT2G42170.5 | 78.319 | 226 | 46 | 1 | 152 | 377 | 9 | 231 | 1.47e-131 | 376 |
| Msa0161400 | AT3G27000.1 | 44.327 | 379 | 197 | 4 | 10 | 374 | 7 | 385 | 3.56e-122 | 358 |
| Msa0161400 | AT1G18450.1 | 37.246 | 443 | 208 | 9 | 1 | 376 | 1 | 440 | 2.78e-95 | 291 |
| Msa0161400 | AT1G13180.1 | 34.615 | 416 | 212 | 11 | 10 | 372 | 9 | 417 | 8.40e-72 | 231 |
| Msa0161400 | AT3G60830.1 | 37.731 | 379 | 212 | 9 | 7 | 377 | 1 | 363 | 1.91e-67 | 217 |
| Msa0161400 | AT3G33520.1 | 30.166 | 421 | 236 | 7 | 10 | 377 | 5 | 420 | 4.30e-58 | 195 |
| Msa0161400 | AT5G56180.3 | 31.690 | 284 | 169 | 9 | 91 | 358 | 50 | 324 | 2.60e-35 | 132 |
| Msa0161400 | AT5G56180.1 | 31.690 | 284 | 169 | 9 | 91 | 358 | 182 | 456 | 1.57e-34 | 133 |
| Msa0161400 | AT3G12380.2 | 29.572 | 257 | 158 | 6 | 9 | 245 | 21 | 274 | 3.23e-25 | 107 |
| Msa0161400 | AT3G12380.2 | 33.793 | 145 | 92 | 2 | 228 | 368 | 572 | 716 | 2.68e-16 | 81.3 |
| Msa0161400 | AT3G12380.1 | 29.412 | 255 | 155 | 6 | 9 | 245 | 21 | 268 | 1.56e-24 | 105 |
| Msa0161400 | AT3G12380.1 | 33.793 | 145 | 92 | 2 | 228 | 368 | 566 | 710 | 2.67e-16 | 81.3 |
| Msa0161400 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.26e-23 | 95.1 |
| Msa0161400 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.26e-23 | 95.1 |
| Msa0161400 | AT5G56180.2 | 32.673 | 202 | 113 | 8 | 91 | 281 | 182 | 371 | 1.29e-19 | 89.7 |
| Msa0161400 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 2.93e-12 | 64.7 |
Find 118 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTCTTGTTTGTGATAA+TGG | 0.154159 | 1_4:-36682069 | Msa0161400:CDS |
| ATAGGTATTGTTCTTGATTC+TGG | 0.193204 | 1_4:-36680299 | Msa0161400:intron |
| CTGGATTGGAGGCTCCATTT+TGG | 0.220933 | 1_4:-36679727 | Msa0161400:CDS |
| AGCATGGAATTGTTAGTAAC+TGG | 0.268065 | 1_4:-36681297 | Msa0161400:CDS |
| ATAGCTCTTCTATAATAAAA+TGG | 0.300250 | 1_4:+36679011 | None:intergenic |
| TGTTAGTAACTGGGATGATA+TGG | 0.302766 | 1_4:-36681287 | Msa0161400:CDS |
| CATTCATTTCGGAGATTCTA+AGG | 0.312867 | 1_4:-36682486 | Msa0161400:intron |
| GTGATGAAGCTCAATCAAAA+AGG | 0.325898 | 1_4:-36681348 | Msa0161400:CDS |
| GTTCACAGGAAATGCTTCTA+AGG | 0.326765 | 1_4:-36679200 | Msa0161400:exon |
| ACCAAGTAGCATGAAAATTA+AGG | 0.346175 | 1_4:-36679781 | Msa0161400:CDS |
| AACAGCCGAGCTCGTCTTTG+AGG | 0.347903 | 1_4:+36680058 | None:intergenic |
| CTAACAATTCCATGCTCAAT+TGG | 0.355777 | 1_4:+36681304 | None:intergenic |
| AGAAGAACGGGATGTTCTTC+AGG | 0.356655 | 1_4:+36681220 | None:intergenic |
| ACACGTTGTTTCATTCATTT+CGG | 0.361743 | 1_4:-36682497 | Msa0161400:five_prime_UTR |
| ATCTATCTAAATTGAATTTG+AGG | 0.361879 | 1_4:-36682660 | Msa0161400:five_prime_UTR |
| TAATTGCAGGCTGGATTTGC+CGG | 0.363107 | 1_4:-36681466 | Msa0161400:intron |
| TCCACACGCAATCCTGCGTT+TGG | 0.371608 | 1_4:-36680231 | Msa0161400:CDS |
| CGTGGACGACCTACAATACT+TGG | 0.372841 | 1_4:+36681418 | None:intergenic |
| GGTGCTGAGGGAAGCCAAAA+TGG | 0.378341 | 1_4:+36679713 | None:intergenic |
| CACTGGTGTGATGGTTGGTA+TGG | 0.381213 | 1_4:-36681392 | Msa0161400:CDS |
| CTTGTTTGTGATAATGGAAC+TGG | 0.393561 | 1_4:-36682063 | Msa0161400:CDS |
| GATATTAGAAAGGATCTCTA+TGG | 0.393879 | 1_4:-36679882 | Msa0161400:CDS |
| AGCTATGTATGTTGCCATTC+AGG | 0.402911 | 1_4:-36681122 | Msa0161400:CDS |
| ATCCTGCGTTTGGATCTTGC+AGG | 0.408141 | 1_4:-36680221 | Msa0161400:CDS |
| CGATTAGCCTTTGGATTAAG+TGG | 0.413728 | 1_4:+36681187 | None:intergenic |
| AGGAAGTATAGTGTCTGGAT+TGG | 0.419464 | 1_4:-36679741 | Msa0161400:CDS |
| GATGGCTGGAAGAGTACTTC+AGG | 0.422610 | 1_4:+36679972 | None:intergenic |
| TGTTCCCCGGCATTGCTGAT+AGG | 0.428746 | 1_4:-36679830 | Msa0161400:CDS |
| GCTATGTATTGTGACTGATT+TGG | 0.445766 | 1_4:-36678993 | Msa0161400:three_prime_UTR |
| TTCCCTCAGCACCTTCCAAC+AGG | 0.446388 | 1_4:-36679703 | Msa0161400:intron |
| TGAGGTACCCGCGTTGTTGT+TGG | 0.447988 | 1_4:+36682590 | None:intergenic |
| CTCTTCCAGCCATCCATGAT+TGG | 0.448268 | 1_4:-36679963 | Msa0161400:CDS |
| ATACATAGCTGGAGCATTGA+AGG | 0.451630 | 1_4:+36681135 | None:intergenic |
| AAGTATAGTGTCTGGATTGG+AGG | 0.453134 | 1_4:-36679738 | Msa0161400:CDS |
| AGGGCATATCCTTCATAGAT+AGG | 0.454246 | 1_4:+36680254 | None:intergenic |
| GATGGACAGGTGATCACAAT+AGG | 0.457168 | 1_4:-36680014 | Msa0161400:CDS |
| AAGGCTGAATATGATGAATC+AGG | 0.458861 | 1_4:-36679233 | Msa0161400:CDS |
| TATGCTAGTGGTCGTACAAC+CGG | 0.459900 | 1_4:-36681085 | Msa0161400:intron |
| CGCTCTTGGTGCATCATCTC+CGG | 0.460066 | 1_4:+36681447 | None:intergenic |
| AAGCGAAAGCACGGCCTGAA+TGG | 0.462189 | 1_4:+36681108 | None:intergenic |
| ATTGTGATCACCTGTCCATC+AGG | 0.463240 | 1_4:+36680017 | None:intergenic |
| GATGAGATAGTGGTATGTAT+TGG | 0.465957 | 1_4:-36678960 | Msa0161400:three_prime_UTR |
| CTCATCCTATCAGCAATGCC+GGG | 0.468005 | 1_4:+36679825 | None:intergenic |
| GGTGCTTCAGTTAGAAGAAC+GGG | 0.471878 | 1_4:+36681208 | None:intergenic |
| ATACTTGGGAACACCGCTCT+TGG | 0.479361 | 1_4:+36681433 | None:intergenic |
| CATTTCCTGTGAACAATTGA+AGG | 0.480733 | 1_4:+36679209 | None:intergenic |
| TTCATAATCAAGAGCTATGT+AGG | 0.480816 | 1_4:+36680094 | None:intergenic |
| TAACAATTCCATGCTCAATT+GGG | 0.481241 | 1_4:+36681305 | None:intergenic |
| GCGGTGTTCCCAAGTATTGT+AGG | 0.485103 | 1_4:-36681427 | Msa0161400:CDS |
| ATTGTTCTTGATTCTGGAGA+TGG | 0.486571 | 1_4:-36680293 | Msa0161400:CDS |
| CAGAGAGGAAGTATAGTGTC+TGG | 0.492085 | 1_4:-36679746 | Msa0161400:CDS |
| AACGCAGGATTGCGTGTGGA+AGG | 0.498417 | 1_4:+36680234 | None:intergenic |
| CTATGAGTTACCTGATGGAC+AGG | 0.498962 | 1_4:-36680027 | Msa0161400:CDS |
| AGGAGCTTCCATACCAATCA+TGG | 0.501773 | 1_4:+36679950 | None:intergenic |
| GGGATGATATGGAAAAGATC+TGG | 0.506672 | 1_4:-36681276 | Msa0161400:CDS |
| TATTTATATGTTGGGATGAG+AGG | 0.517815 | 1_4:-36679071 | Msa0161400:three_prime_UTR |
| GCTCATCCTATCAGCAATGC+CGG | 0.518030 | 1_4:+36679824 | None:intergenic |
| GATTTCACGCTCGGCTGTTG+TGG | 0.522000 | 1_4:+36680142 | None:intergenic |
| CAGACACTATACTTCCTCTC+TGG | 0.523127 | 1_4:+36679747 | None:intergenic |
| CACACAGTTCCTATCTATGA+AGG | 0.525553 | 1_4:-36680263 | Msa0161400:CDS |
| GTGCTTTCGCTTTATGCTAG+TGG | 0.528191 | 1_4:-36681097 | Msa0161400:CDS |
| CCATACCAATCATGGATGGC+TGG | 0.531059 | 1_4:+36679958 | None:intergenic |
| GTCTCTCACGATTTCACGCT+CGG | 0.537921 | 1_4:+36680133 | None:intergenic |
| CCAGCCATCCATGATTGGTA+TGG | 0.540901 | 1_4:-36679958 | Msa0161400:CDS |
| TTCAGGACAACGGAAACGTT+CGG | 0.541873 | 1_4:+36679989 | None:intergenic |
| CAGGCCCTTCAATTGTTCAC+AGG | 0.542188 | 1_4:-36679214 | Msa0161400:CDS |
| ATGAAAATCTTAACCGAGCG+TGG | 0.549893 | 1_4:-36680176 | Msa0161400:CDS |
| ATACCTGTTGGAAGGTGCTG+AGG | 0.550602 | 1_4:+36679700 | None:intergenic |
| GATGGTTGGTATGGGACAAA+AGG | 0.552916 | 1_4:-36681383 | Msa0161400:CDS |
| TGAATGGCAACATACATAGC+TGG | 0.554069 | 1_4:+36681124 | None:intergenic |
| TATGTTGTTTCATGTATACC+AGG | 0.569084 | 1_4:+36679930 | None:intergenic |
| CTAAAGTACCCAATTGAGCA+TGG | 0.570119 | 1_4:-36681313 | Msa0161400:CDS |
| AAGAGCTATGAGTTACCTGA+TGG | 0.572599 | 1_4:-36680032 | Msa0161400:CDS |
| GTGTGATGTCGATATTAGAA+AGG | 0.572715 | 1_4:-36679892 | Msa0161400:CDS |
| TCCACGCCACACTGGTGTGA+TGG | 0.574722 | 1_4:-36681401 | Msa0161400:CDS |
| ATGATTGGTATGGAAGCTCC+TGG | 0.576789 | 1_4:-36679948 | Msa0161400:CDS |
| AGAAACCTCAAAGACGAGCT+CGG | 0.577050 | 1_4:-36680063 | Msa0161400:CDS |
| GAACATGTCTTGTGTGGTTG+AGG | 0.577891 | 1_4:+36682572 | None:intergenic |
| ACGCAGGATTGCGTGTGGAA+GGG | 0.581046 | 1_4:+36680235 | None:intergenic |
| CGCCACACTGGTGTGATGGT+TGG | 0.586183 | 1_4:-36681397 | Msa0161400:CDS |
| GAGCAAGGAGATCACAGCAT+TGG | 0.587533 | 1_4:-36679805 | Msa0161400:CDS |
| TACCTGTTGGAAGGTGCTGA+GGG | 0.587542 | 1_4:+36679701 | None:intergenic |
| ACCATCACACCAGTGTGGCG+TGG | 0.593745 | 1_4:+36681400 | None:intergenic |
| TATATATTCGATAATATAGA+CGG | 0.596384 | 1_4:-36682688 | None:intergenic |
| GTTCCATTATCACAAACAAG+AGG | 0.600317 | 1_4:+36682066 | None:intergenic |
| ACACTATACTTCCTCTCTGG+TGG | 0.604108 | 1_4:+36679750 | None:intergenic |
| ATTTCCTGTGAACAATTGAA+GGG | 0.604151 | 1_4:+36679210 | None:intergenic |
| TAATGGAACTGGAATGGTCA+AGG | 0.604703 | 1_4:-36682052 | Msa0161400:intron |
| TGGTGCTTCAGTTAGAAGAA+CGG | 0.612254 | 1_4:+36681207 | None:intergenic |
| TTTAAAACCAACAACAACGC+GGG | 0.615333 | 1_4:-36682597 | Msa0161400:five_prime_UTR |
| TGAAGCACCACTTAATCCAA+AGG | 0.619561 | 1_4:-36681194 | Msa0161400:CDS |
| TATGGAAACATCGTATTGAG+TGG | 0.620418 | 1_4:-36679864 | Msa0161400:CDS |
| GGTGGTACGACTATGTTCCC+CGG | 0.621683 | 1_4:-36679843 | Msa0161400:CDS |
| GGACAAAAGGATGCATATGT+TGG | 0.623959 | 1_4:-36681370 | Msa0161400:CDS |
| TTGTGATAATGGAACTGGAA+TGG | 0.628921 | 1_4:-36682058 | Msa0161400:CDS |
| TGAAATCGTGAGAGACGTGA+AGG | 0.629620 | 1_4:-36680126 | Msa0161400:CDS |
| GTGCAGTAATCAATAAACAA+TGG | 0.630705 | 1_4:-36682109 | Msa0161400:intron |
| CGGAGATGATGCACCAAGAG+CGG | 0.633201 | 1_4:-36681446 | Msa0161400:CDS |
| GCATGGAATTGTTAGTAACT+GGG | 0.633326 | 1_4:-36681296 | Msa0161400:CDS |
| CATGCACTATACCTGTTGGA+AGG | 0.635341 | 1_4:+36679692 | None:intergenic |
| ACTAGCATAAAGCGAAAGCA+CGG | 0.638011 | 1_4:+36681099 | None:intergenic |
| GCTTCCATACCAATCATGGA+TGG | 0.638459 | 1_4:+36679954 | None:intergenic |
| TCCAAACGCAGGATTGCGTG+TGG | 0.640726 | 1_4:+36680230 | None:intergenic |
| ACTGGTGTGATGGTTGGTAT+GGG | 0.640914 | 1_4:-36681391 | Msa0161400:CDS |
| GTGGACGACCTACAATACTT+GGG | 0.641270 | 1_4:+36681419 | None:intergenic |
| GGTGAAAGAGTATCCACGCT+CGG | 0.643494 | 1_4:+36680163 | None:intergenic |
| CATTGCTGATAGGATGAGCA+AGG | 0.644331 | 1_4:-36679820 | Msa0161400:CDS |
| AAGTAGCATGAAAATTAAGG+TGG | 0.656638 | 1_4:-36679778 | Msa0161400:CDS |
| GGAAACATCGTATTGAGTGG+TGG | 0.669837 | 1_4:-36679861 | Msa0161400:CDS |
| TTTAACGAACATGTCTTGTG+TGG | 0.673057 | 1_4:+36682566 | None:intergenic |
| AATGCAGATGTGGATTGCAA+AGG | 0.677558 | 1_4:-36679252 | Msa0161400:intron |
| TCATCCTATCAGCAATGCCG+GGG | 0.683199 | 1_4:+36679826 | None:intergenic |
| GTAGGTCGTCCACGCCACAC+TGG | 0.686011 | 1_4:-36681409 | Msa0161400:CDS |
| GACCTGCAAGATCCAAACGC+AGG | 0.690015 | 1_4:+36680219 | None:intergenic |
| GGAAGAGTACTTCAGGACAA+CGG | 0.707065 | 1_4:+36679979 | None:intergenic |
| AGGTGGTTGCACCACCAGAG+AGG | 0.708305 | 1_4:-36679761 | Msa0161400:CDS |
| CTTCATAGATAGGAACTGTG+TGG | 0.711555 | 1_4:+36680264 | None:intergenic |
| TACCAACCATCACACCAGTG+TGG | 0.726907 | 1_4:+36681395 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTTTTTTTTTTTT+TGG | + | chr1_4:36679149-36679168 | None:intergenic | 0.0% |
| !! | TTATGATAATAATATAAGTT+TGG | - | chr1_4:36679466-36679485 | Msa0161400:intron | 10.0% |
| !! | TATCAAATGTTAAAAAAAAA+TGG | + | chr1_4:36681208-36681227 | None:intergenic | 10.0% |
| !! | TATAAAATATAATTGTAGAA+TGG | - | chr1_4:36681257-36681276 | Msa0161400:CDS | 10.0% |
| !! | ATAAAATATAATTGTAGAAT+GGG | - | chr1_4:36681258-36681277 | Msa0161400:CDS | 10.0% |
| !!! | TTTTATAATGTTTTAAATCG+TGG | + | chr1_4:36679807-36679826 | None:intergenic | 15.0% |
| !!! | TTATTTTCCTTTCATTTTAA+AGG | + | chr1_4:36681965-36681984 | None:intergenic | 15.0% |
| !!! | TTTTCTTCTATTTATATGTT+GGG | - | chr1_4:36682526-36682545 | Msa0161400:five_prime_UTR | 15.0% |
| !! | ATCTATCTAAATTGAATTTG+AGG | - | chr1_4:36678945-36678964 | Msa0161400:three_prime_UTR | 20.0% |
| !!! | TTTTAAAAAAGGAAAGTTAG+TGG | + | chr1_4:36678995-36679014 | None:intergenic | 20.0% |
| !! | TAATGAGTTAGATAGAAATA+TGG | - | chr1_4:36679853-36679872 | Msa0161400:CDS | 20.0% |
| !! | ATATCTTTACAATTCTCAAA+AGG | + | chr1_4:36680570-36680589 | None:intergenic | 20.0% |
| !!! | ATATGTTTGAAATGATAGAA+AGG | - | chr1_4:36680874-36680893 | Msa0161400:intron | 20.0% |
| !!! | TTTTTGGTAATTTGAAAGAA+TGG | + | chr1_4:36681137-36681156 | None:intergenic | 20.0% |
| !! | TCTTTCAAATTACCAAAAAA+TGG | - | chr1_4:36681138-36681157 | Msa0161400:CDS | 20.0% |
| !!! | AAAGTTTTCATTCCATTTTT+TGG | + | chr1_4:36681153-36681172 | None:intergenic | 20.0% |
| !! | AACTTTAAATATCCAAACAA+TGG | - | chr1_4:36681167-36681186 | Msa0161400:CDS | 20.0% |
| !! | TCTTAAACCACATTAAAAAA+GGG | + | chr1_4:36682308-36682327 | None:intergenic | 20.0% |
| !!! | GTTTTCTTCTATTTATATGT+TGG | - | chr1_4:36682525-36682544 | Msa0161400:five_prime_UTR | 20.0% |
| !! | ATAGCTCTTCTATAATAAAA+TGG | + | chr1_4:36682597-36682616 | None:intergenic | 20.0% |
| !!! | GTTGTTGTTGGTTTTAAAAA+AGG | + | chr1_4:36679006-36679025 | None:intergenic | 25.0% |
| ! | ATGATGATAGAAAATGAGAA+AGG | + | chr1_4:36679200-36679219 | None:intergenic | 25.0% |
| ! | CTAATCAAATAAGATCAACA+AGG | + | chr1_4:36679594-36679613 | None:intergenic | 25.0% |
| !! | CTTGTTGATCTTATTTGATT+AGG | - | chr1_4:36679592-36679611 | Msa0161400:intron | 25.0% |
| !! | GATCTTATTTGATTAGGTAA+AGG | - | chr1_4:36679598-36679617 | Msa0161400:intron | 25.0% |
| ! | CAATTGTATAACACATATCA+AGG | + | chr1_4:36679986-36680005 | None:intergenic | 25.0% |
| !! | TACCACAATTTAACACATTT+TGG | - | chr1_4:36680064-36680083 | Msa0161400:CDS | 25.0% |
| ! | AACCAAAATGTGTTAAATTG+TGG | + | chr1_4:36680069-36680088 | None:intergenic | 25.0% |
| !! | GATGTGTTTTATATAATTGC+AGG | - | chr1_4:36680126-36680145 | Msa0161400:CDS | 25.0% |
| ! | AAACATAGAAGAATCTTTAC+CGG | + | chr1_4:36680542-36680561 | None:intergenic | 25.0% |
| ! | GTAAAGATATATGTGAAAAG+TGG | - | chr1_4:36680580-36680599 | Msa0161400:intron | 25.0% |
| !! | TTTTTATCAACGTACTTGTT+TGG | + | chr1_4:36680672-36680691 | None:intergenic | 25.0% |
| ! | AAATTCTAATGAAATACGAG+TGG | + | chr1_4:36680746-36680765 | None:intergenic | 25.0% |
| ! | AATGTTTCATGAATGATTTG+AGG | - | chr1_4:36680851-36680870 | Msa0161400:intron | 25.0% |
| ! | ATGAAACTGAATGAATAGTA+CGG | + | chr1_4:36681044-36681063 | None:intergenic | 25.0% |
| ! | AAAATCACAAAACCATTGTT+TGG | + | chr1_4:36681182-36681201 | None:intergenic | 25.0% |
| !!! | TTAGAGACCTTTAAAATGAA+AGG | - | chr1_4:36681955-36681974 | Msa0161400:intron | 25.0% |
| ! | GAAAGGAAAATAATGCATAA+AGG | - | chr1_4:36681972-36681991 | Msa0161400:intron | 25.0% |
| ! | GTTTATATGAGCTTATCTAT+AGG | - | chr1_4:36682033-36682052 | Msa0161400:intron | 25.0% |
| ! | TGTTTATACATAGCACATAT+AGG | - | chr1_4:36682222-36682241 | Msa0161400:intron | 25.0% |
| !!! | TGAAATACCCTTTTTTAATG+TGG | - | chr1_4:36682298-36682317 | Msa0161400:intron | 25.0% |
| ! | CTCTTAAACCACATTAAAAA+AGG | + | chr1_4:36682309-36682328 | None:intergenic | 25.0% |
| !!! | CTTTTTTAATGTGGTTTAAG+AGG | - | chr1_4:36682307-36682326 | Msa0161400:intron | 25.0% |
| ! | CTAAGAAATACCATAAAAAC+TGG | - | chr1_4:36682446-36682465 | Msa0161400:intron | 25.0% |
| !!! | TTTGTATTTTGATGAGATAG+TGG | - | chr1_4:36682635-36682654 | Msa0161400:five_prime_UTR | 25.0% |
| !!! | TTTTAAAACCAACAACAACG+CGG | - | chr1_4:36679007-36679026 | Msa0161400:three_prime_UTR | 30.0% |
| ! | ACACGTTGTTTCATTCATTT+CGG | - | chr1_4:36679108-36679127 | Msa0161400:three_prime_UTR | 30.0% |
| TGTGTTCTTGTGAAAGAAAA+TGG | - | chr1_4:36679343-36679362 | Msa0161400:intron | 30.0% | |
| ! | TAGATCTCATTTTCTACGTT+TGG | - | chr1_4:36679398-36679417 | Msa0161400:intron | 30.0% |
| GTGCAGTAATCAATAAACAA+TGG | - | chr1_4:36679496-36679515 | Msa0161400:intron | 30.0% | |
| TCAAATAAGATCAACAAGGT+TGG | + | chr1_4:36679590-36679609 | None:intergenic | 30.0% | |
| !! | AGGTAAAGGTTTTTCGAAAA+AGG | - | chr1_4:36679612-36679631 | Msa0161400:intron | 30.0% |
| TCTTGTAATCTAGTAGTACA+TGG | - | chr1_4:36679960-36679979 | Msa0161400:CDS | 30.0% | |
| TTCTGTAATCAAGTACTACT+TGG | - | chr1_4:36680099-36680118 | Msa0161400:CDS | 30.0% | |
| ! | TGTTTTATATAATTGCAGGC+TGG | - | chr1_4:36680130-36680149 | Msa0161400:CDS | 30.0% |
| TGATGAAGCTCAATCAAAAA+GGG | - | chr1_4:36680258-36680277 | Msa0161400:CDS | 30.0% | |
| TAACAATTCCATGCTCAATT+GGG | + | chr1_4:36680303-36680322 | None:intergenic | 30.0% | |
| ! | ATATCGATTGTACAATTTGC+AGG | - | chr1_4:36680785-36680804 | Msa0161400:intron | 30.0% |
| TGCAGGAATTAATAATGTCA+TGG | - | chr1_4:36680802-36680821 | Msa0161400:intron | 30.0% | |
| ! | CGTCGTTTATATCTTGTTAT+AGG | - | chr1_4:36681288-36681307 | Msa0161400:CDS | 30.0% |
| ! | ATAGGTATTGTTCTTGATTC+TGG | - | chr1_4:36681306-36681325 | Msa0161400:CDS | 30.0% |
| TTCATAATCAAGAGCTATGT+AGG | + | chr1_4:36681514-36681533 | None:intergenic | 30.0% | |
| !! | TATGTTGTTTCATGTATACC+AGG | + | chr1_4:36681678-36681697 | None:intergenic | 30.0% |
| GATATTAGAAAGGATCTCTA+TGG | - | chr1_4:36681723-36681742 | Msa0161400:intron | 30.0% | |
| ACCAAGTAGCATGAAAATTA+AGG | - | chr1_4:36681824-36681843 | Msa0161400:intron | 30.0% | |
| ! | ACCTTAATTTTCATGCTACT+TGG | + | chr1_4:36681828-36681847 | None:intergenic | 30.0% |
| AAGTAGCATGAAAATTAAGG+TGG | - | chr1_4:36681827-36681846 | Msa0161400:intron | 30.0% | |
| ! | TAATAGTCAACAAGCTTGTT+TGG | - | chr1_4:36682006-36682025 | Msa0161400:intron | 30.0% |
| GATAAGCACTTATGCTATAA+GGG | - | chr1_4:36682244-36682263 | Msa0161400:intron | 30.0% | |
| ATTTCCTGTGAACAATTGAA+GGG | + | chr1_4:36682398-36682417 | None:intergenic | 30.0% | |
| AATACCATAAAAACTGGTTG+AGG | - | chr1_4:36682452-36682471 | Msa0161400:intron | 30.0% | |
| TATTTATATGTTGGGATGAG+AGG | - | chr1_4:36682534-36682553 | Msa0161400:five_prime_UTR | 30.0% | |
| ! | TTTAAAACCAACAACAACGC+GGG | - | chr1_4:36679008-36679027 | Msa0161400:three_prime_UTR | 35.0% |
| TTTAACGAACATGTCTTGTG+TGG | + | chr1_4:36679042-36679061 | None:intergenic | 35.0% | |
| CATTCATTTCGGAGATTCTA+AGG | - | chr1_4:36679119-36679138 | Msa0161400:three_prime_UTR | 35.0% | |
| ! | CAACCTCTTGTTTGTGATAA+TGG | - | chr1_4:36679536-36679555 | Msa0161400:intron | 35.0% |
| GTTCCATTATCACAAACAAG+AGG | + | chr1_4:36679542-36679561 | None:intergenic | 35.0% | |
| !! | CTTGTTTGTGATAATGGAAC+TGG | - | chr1_4:36679542-36679561 | Msa0161400:intron | 35.0% |
| !! | TTGTGATAATGGAACTGGAA+TGG | - | chr1_4:36679547-36679566 | Msa0161400:intron | 35.0% |
| ATAAGATCAACAAGGTTGGA+TGG | + | chr1_4:36679586-36679605 | None:intergenic | 35.0% | |
| GTGATGAAGCTCAATCAAAA+AGG | - | chr1_4:36680257-36680276 | Msa0161400:CDS | 35.0% | |
| GATGAAGCTCAATCAAAAAG+GGG | - | chr1_4:36680259-36680278 | Msa0161400:CDS | 35.0% | |
| CTAACAATTCCATGCTCAAT+TGG | + | chr1_4:36680304-36680323 | None:intergenic | 35.0% | |
| AGCATGGAATTGTTAGTAAC+TGG | - | chr1_4:36680308-36680327 | Msa0161400:intron | 35.0% | |
| GCATGGAATTGTTAGTAACT+GGG | - | chr1_4:36680309-36680328 | Msa0161400:intron | 35.0% | |
| TGTTAGTAACTGGGATGATA+TGG | - | chr1_4:36680318-36680337 | Msa0161400:intron | 35.0% | |
| !!! | ATTTTCTCACGATTAGCCTT+TGG | + | chr1_4:36680430-36680449 | None:intergenic | 35.0% |
| AAAGTGGCGTATTCAAAACA+CGG | - | chr1_4:36680596-36680615 | Msa0161400:intron | 35.0% | |
| TATTCAAAACACGGGATCAT+TGG | - | chr1_4:36680605-36680624 | Msa0161400:intron | 35.0% | |
| ATTCAAAACACGGGATCATT+GGG | - | chr1_4:36680606-36680625 | Msa0161400:intron | 35.0% | |
| AATGATAGAAAGGAATGCAG+CGG | - | chr1_4:36680884-36680903 | Msa0161400:intron | 35.0% | |
| ! | TGTTTGAAATACGAAGCACT+TGG | - | chr1_4:36680929-36680948 | Msa0161400:intron | 35.0% |
| ! | AGTTTTCTTCCTGCAATATG+TGG | - | chr1_4:36681075-36681094 | Msa0161400:intron | 35.0% |
| GTTATGGATGAAAGTGAAAC+TGG | - | chr1_4:36681097-36681116 | Msa0161400:CDS | 35.0% | |
| ! | AAAGAATGGTGCCAAGTTAT+AGG | + | chr1_4:36681123-36681142 | None:intergenic | 35.0% |
| ! | ATTGTTCTTGATTCTGGAGA+TGG | - | chr1_4:36681312-36681331 | Msa0161400:CDS | 35.0% |
| ! | CTCGGTTAAGATTTTCATGA+GGG | + | chr1_4:36681427-36681446 | None:intergenic | 35.0% |
| GTGTGATGTCGATATTAGAA+AGG | - | chr1_4:36681713-36681732 | Msa0161400:intron | 35.0% | |
| TATGGAAACATCGTATTGAG+TGG | - | chr1_4:36681741-36681760 | Msa0161400:intron | 35.0% | |
| GGATAAGCACTTATGCTATA+AGG | - | chr1_4:36682243-36682262 | Msa0161400:intron | 35.0% | |
| CATCTGCATTAGGAAAGAAA+AGG | + | chr1_4:36682343-36682362 | None:intergenic | 35.0% | |
| TTTCTTTCCTAATGCAGATG+TGG | - | chr1_4:36682343-36682362 | Msa0161400:intron | 35.0% | |
| AAGGCTGAATATGATGAATC+AGG | - | chr1_4:36682372-36682391 | Msa0161400:intron | 35.0% | |
| CATTTCCTGTGAACAATTGA+AGG | + | chr1_4:36682399-36682418 | None:intergenic | 35.0% | |
| ! | AGATCCTCAACCAGTTTTTA+TGG | + | chr1_4:36682459-36682478 | None:intergenic | 35.0% |
| GCTATGTATTGTGACTGATT+TGG | - | chr1_4:36682612-36682631 | Msa0161400:five_prime_UTR | 35.0% | |
| ! | GATGAGATAGTGGTATGTAT+TGG | - | chr1_4:36682645-36682664 | Msa0161400:five_prime_UTR | 35.0% |
| TAATGGAACTGGAATGGTCA+AGG | - | chr1_4:36679553-36679572 | Msa0161400:intron | 40.0% | |
| AATACTACGATGTCGCAATC+AGG | + | chr1_4:36679640-36679659 | None:intergenic | 40.0% | |
| GGACAAAAGGATGCATATGT+TGG | - | chr1_4:36680235-36680254 | Msa0161400:CDS | 40.0% | |
| ! | CTAAAGTACCCAATTGAGCA+TGG | - | chr1_4:36680292-36680311 | Msa0161400:CDS | 40.0% |
| GGGATGATATGGAAAAGATC+TGG | - | chr1_4:36680329-36680348 | Msa0161400:intron | 40.0% | |
| TGGTGCTTCAGTTAGAAGAA+CGG | + | chr1_4:36680401-36680420 | None:intergenic | 40.0% | |
| ! | TGAAGCACCACTTAATCCAA+AGG | - | chr1_4:36680411-36680430 | Msa0161400:intron | 40.0% |
| !! | CGATTAGCCTTTGGATTAAG+TGG | + | chr1_4:36680421-36680440 | None:intergenic | 40.0% |
| !! | ATACATAGCTGGAGCATTGA+AGG | + | chr1_4:36680473-36680492 | None:intergenic | 40.0% |
| TGAATGGCAACATACATAGC+TGG | + | chr1_4:36680484-36680503 | None:intergenic | 40.0% | |
| AGCTATGTATGTTGCCATTC+AGG | - | chr1_4:36680483-36680502 | Msa0161400:intron | 40.0% | |
| ACTAGCATAAAGCGAAAGCA+CGG | + | chr1_4:36680509-36680528 | None:intergenic | 40.0% | |
| AAGTGGCGTATTCAAAACAC+GGG | - | chr1_4:36680597-36680616 | Msa0161400:intron | 40.0% | |
| TTCAAAACACGGGATCATTG+GGG | - | chr1_4:36680607-36680626 | Msa0161400:intron | 40.0% | |
| CTTCCTGCAATATGTGGTTA+TGG | - | chr1_4:36681081-36681100 | Msa0161400:intron | 40.0% | |
| CATCCATAACCACATATTGC+AGG | + | chr1_4:36681087-36681106 | None:intergenic | 40.0% | |
| ! | AGTGAAACTGGCCTATAACT+TGG | - | chr1_4:36681109-36681128 | Msa0161400:CDS | 40.0% |
| CAAGTTCTTTAAGCTACGCA+TGG | + | chr1_4:36681232-36681251 | None:intergenic | 40.0% | |
| CTTCATAGATAGGAACTGTG+TGG | + | chr1_4:36681344-36681363 | None:intergenic | 40.0% | |
| CACACAGTTCCTATCTATGA+AGG | - | chr1_4:36681342-36681361 | Msa0161400:CDS | 40.0% | |
| AGGGCATATCCTTCATAGAT+AGG | + | chr1_4:36681354-36681373 | None:intergenic | 40.0% | |
| ! | GCTCGGTTAAGATTTTCATG+AGG | + | chr1_4:36681428-36681447 | None:intergenic | 40.0% |
| ATGAAAATCTTAACCGAGCG+TGG | - | chr1_4:36681429-36681448 | Msa0161400:CDS | 40.0% | |
| AAGAGCTATGAGTTACCTGA+TGG | - | chr1_4:36681573-36681592 | Msa0161400:intron | 40.0% | |
| ! | AGGAAGTATAGTGTCTGGAT+TGG | - | chr1_4:36681864-36681883 | Msa0161400:intron | 40.0% |
| ! | AAGTATAGTGTCTGGATTGG+AGG | - | chr1_4:36681867-36681886 | Msa0161400:intron | 40.0% |
| AAGTCATGCACTATACCTGT+TGG | + | chr1_4:36681920-36681939 | None:intergenic | 40.0% | |
| GGGTATTTCAAACACATGTC+TGG | + | chr1_4:36682288-36682307 | None:intergenic | 40.0% | |
| TTGCAATCCACATCTGCATT+AGG | + | chr1_4:36682353-36682372 | None:intergenic | 40.0% | |
| ! | AATGCAGATGTGGATTGCAA+AGG | - | chr1_4:36682353-36682372 | Msa0161400:intron | 40.0% |
| GTTCACAGGAAATGCTTCTA+AGG | - | chr1_4:36682405-36682424 | Msa0161400:intron | 40.0% | |
| GAACATGTCTTGTGTGGTTG+AGG | + | chr1_4:36679036-36679055 | None:intergenic | 45.0% | |
| GAACTGGAATGGTCAAGGTA+TGG | - | chr1_4:36679558-36679577 | Msa0161400:intron | 45.0% | |
| ATACTATGATGTCGCTGTCG+CGG | + | chr1_4:36679691-36679710 | None:intergenic | 45.0% | |
| ATCACAAGTGACCGCAATTC+TGG | - | chr1_4:36679729-36679748 | Msa0161400:CDS | 45.0% | |
| TTCATGTAGCTAACCCCACT+TGG | - | chr1_4:36679906-36679925 | Msa0161400:CDS | 45.0% | |
| TAATTGCAGGCTGGATTTGC+CGG | - | chr1_4:36680139-36680158 | Msa0161400:CDS | 45.0% | |
| GTGGACGACCTACAATACTT+GGG | + | chr1_4:36680189-36680208 | None:intergenic | 45.0% | |
| ! | ACTGGTGTGATGGTTGGTAT+GGG | - | chr1_4:36680214-36680233 | Msa0161400:CDS | 45.0% |
| ! | GATGGTTGGTATGGGACAAA+AGG | - | chr1_4:36680222-36680241 | Msa0161400:CDS | 45.0% |
| AGAAGAACGGGATGTTCTTC+AGG | + | chr1_4:36680388-36680407 | None:intergenic | 45.0% | |
| GGTGCTTCAGTTAGAAGAAC+GGG | + | chr1_4:36680400-36680419 | None:intergenic | 45.0% | |
| GTGCTTTCGCTTTATGCTAG+TGG | - | chr1_4:36680508-36680527 | Msa0161400:intron | 45.0% | |
| TATGCTAGTGGTCGTACAAC+CGG | - | chr1_4:36680520-36680539 | Msa0161400:intron | 45.0% | |
| CACTGTGTCAAGGTCATTTG+TGG | + | chr1_4:36680968-36680987 | None:intergenic | 45.0% | |
| ACACAGACGCTAACACATGT+CGG | - | chr1_4:36680990-36681009 | Msa0161400:intron | 45.0% | |
| AGTACGGACACATAAGATCG+TGG | + | chr1_4:36681028-36681047 | None:intergenic | 45.0% | |
| TGAAATCGTGAGAGACGTGA+AGG | - | chr1_4:36681479-36681498 | Msa0161400:intron | 45.0% | |
| AGAAACCTCAAAGACGAGCT+CGG | - | chr1_4:36681542-36681561 | Msa0161400:intron | 45.0% | |
| ! | CTATGAGTTACCTGATGGAC+AGG | - | chr1_4:36681578-36681597 | Msa0161400:intron | 45.0% |
| ATTGTGATCACCTGTCCATC+AGG | + | chr1_4:36681591-36681610 | None:intergenic | 45.0% | |
| GATGGACAGGTGATCACAAT+AGG | - | chr1_4:36681591-36681610 | Msa0161400:intron | 45.0% | |
| TTCAGGACAACGGAAACGTT+CGG | + | chr1_4:36681619-36681638 | None:intergenic | 45.0% | |
| !! | GGAAGAGTACTTCAGGACAA+CGG | + | chr1_4:36681629-36681648 | None:intergenic | 45.0% |
| GCTTCCATACCAATCATGGA+TGG | + | chr1_4:36681654-36681673 | None:intergenic | 45.0% | |
| AGGAGCTTCCATACCAATCA+TGG | + | chr1_4:36681658-36681677 | None:intergenic | 45.0% | |
| ATGATTGGTATGGAAGCTCC+TGG | - | chr1_4:36681657-36681676 | Msa0161400:intron | 45.0% | |
| GGAAACATCGTATTGAGTGG+TGG | - | chr1_4:36681744-36681763 | Msa0161400:intron | 45.0% | |
| CATTGCTGATAGGATGAGCA+AGG | - | chr1_4:36681785-36681804 | Msa0161400:intron | 45.0% | |
| ACACTATACTTCCTCTCTGG+TGG | + | chr1_4:36681858-36681877 | None:intergenic | 45.0% | |
| CAGACACTATACTTCCTCTC+TGG | + | chr1_4:36681861-36681880 | None:intergenic | 45.0% | |
| ! | CAGAGAGGAAGTATAGTGTC+TGG | - | chr1_4:36681859-36681878 | Msa0161400:intron | 45.0% |
| CATGCACTATACCTGTTGGA+AGG | + | chr1_4:36681916-36681935 | None:intergenic | 45.0% | |
| AGCTGATGCAGCCAGAATTG+CGG | + | chr1_4:36679743-36679762 | None:intergenic | 50.0% | |
| ATGTAGCTAACCCCACTTGG+TGG | - | chr1_4:36679909-36679928 | Msa0161400:CDS | 50.0% | |
| TGTAGCTAACCCCACTTGGT+GGG | - | chr1_4:36679910-36679929 | Msa0161400:CDS | 50.0% | |
| ! | TAACCCCACTTGGTGGGATA+AGG | - | chr1_4:36679916-36679935 | Msa0161400:CDS | 50.0% |
| ! | AAGCCTTATCCCACCAAGTG+GGG | + | chr1_4:36679922-36679941 | None:intergenic | 50.0% |
| ! | CAAGCCTTATCCCACCAAGT+GGG | + | chr1_4:36679923-36679942 | None:intergenic | 50.0% |
| ! | TCAAGCCTTATCCCACCAAG+TGG | + | chr1_4:36679924-36679943 | None:intergenic | 50.0% |
| AATTGCGATCCTTGCGAGTC+TGG | - | chr1_4:36680022-36680041 | Msa0161400:CDS | 50.0% | |
| ATTGCGATCCTTGCGAGTCT+GGG | - | chr1_4:36680023-36680042 | Msa0161400:CDS | 50.0% | |
| GAGTCTGGGGAATTGGAACA+CGG | - | chr1_4:36680037-36680056 | Msa0161400:CDS | 50.0% | |
| ATACTTGGGAACACCGCTCT+TGG | + | chr1_4:36680175-36680194 | None:intergenic | 50.0% | |
| ! | GCGGTGTTCCCAAGTATTGT+AGG | - | chr1_4:36680178-36680197 | Msa0161400:CDS | 50.0% |
| CGTGGACGACCTACAATACT+TGG | + | chr1_4:36680190-36680209 | None:intergenic | 50.0% | |
| TACCAACCATCACACCAGTG+TGG | + | chr1_4:36680213-36680232 | None:intergenic | 50.0% | |
| ! | CACTGGTGTGATGGTTGGTA+TGG | - | chr1_4:36680213-36680232 | Msa0161400:CDS | 50.0% |
| GGAATGCAGCGGAGTGAAAT+AGG | - | chr1_4:36680895-36680914 | Msa0161400:intron | 50.0% | |
| ! | GTCTGTGTGTCACTGTGTCA+AGG | + | chr1_4:36680978-36680997 | None:intergenic | 50.0% |
| ATCCTGCGTTTGGATCTTGC+AGG | - | chr1_4:36681384-36681403 | Msa0161400:CDS | 50.0% | |
| !! | GGTGAAAGAGTATCCACGCT+CGG | + | chr1_4:36681445-36681464 | None:intergenic | 50.0% |
| GTCTCTCACGATTTCACGCT+CGG | + | chr1_4:36681475-36681494 | None:intergenic | 50.0% | |
| !! | GATGGCTGGAAGAGTACTTC+AGG | + | chr1_4:36681636-36681655 | None:intergenic | 50.0% |
| CTCTTCCAGCCATCCATGAT+TGG | - | chr1_4:36681642-36681661 | Msa0161400:intron | 50.0% | |
| CCATACCAATCATGGATGGC+TGG | + | chr1_4:36681650-36681669 | None:intergenic | 50.0% | |
| CCAGCCATCCATGATTGGTA+TGG | - | chr1_4:36681647-36681666 | Msa0161400:intron | 50.0% | |
| TCATCCTATCAGCAATGCCG+GGG | + | chr1_4:36681782-36681801 | None:intergenic | 50.0% | |
| CTCATCCTATCAGCAATGCC+GGG | + | chr1_4:36681783-36681802 | None:intergenic | 50.0% | |
| GCTCATCCTATCAGCAATGC+CGG | + | chr1_4:36681784-36681803 | None:intergenic | 50.0% | |
| GAGCAAGGAGATCACAGCAT+TGG | - | chr1_4:36681800-36681819 | Msa0161400:intron | 50.0% | |
| !! | CTGGATTGGAGGCTCCATTT+TGG | - | chr1_4:36681878-36681897 | Msa0161400:intron | 50.0% |
| !! | TACCTGTTGGAAGGTGCTGA+GGG | + | chr1_4:36681907-36681926 | None:intergenic | 50.0% |
| !! | ATACCTGTTGGAAGGTGCTG+AGG | + | chr1_4:36681908-36681927 | None:intergenic | 50.0% |
| CAGGCCCTTCAATTGTTCAC+AGG | - | chr1_4:36682391-36682410 | Msa0161400:intron | 50.0% | |
| ! | TGAGGTACCCGCGTTGTTGT+TGG | + | chr1_4:36679018-36679037 | None:intergenic | 55.0% |
| GCTGCATTTGACTGCGAGTC+TGG | - | chr1_4:36679760-36679779 | Msa0161400:CDS | 55.0% | |
| TTGCGATCCTTGCGAGTCTG+GGG | - | chr1_4:36680024-36680043 | Msa0161400:CDS | 55.0% | |
| TCCTTGCGAGTCTGGGGAAT+TGG | - | chr1_4:36680030-36680049 | Msa0161400:CDS | 55.0% | |
| TCCAATTCCCCAGACTCGCA+AGG | + | chr1_4:36680034-36680053 | None:intergenic | 55.0% | |
| ! | CGCTCTTGGTGCATCATCTC+CGG | + | chr1_4:36680161-36680180 | None:intergenic | 55.0% |
| CGGAGATGATGCACCAAGAG+CGG | - | chr1_4:36680159-36680178 | Msa0161400:CDS | 55.0% | |
| ! | AAGCGAAAGCACGGCCTGAA+TGG | + | chr1_4:36680500-36680519 | None:intergenic | 55.0% |
| ACGCAGGATTGCGTGTGGAA+GGG | + | chr1_4:36681373-36681392 | None:intergenic | 55.0% | |
| AACGCAGGATTGCGTGTGGA+AGG | + | chr1_4:36681374-36681393 | None:intergenic | 55.0% | |
| TCCACACGCAATCCTGCGTT+TGG | - | chr1_4:36681374-36681393 | Msa0161400:CDS | 55.0% | |
| TCCAAACGCAGGATTGCGTG+TGG | + | chr1_4:36681378-36681397 | None:intergenic | 55.0% | |
| GACCTGCAAGATCCAAACGC+AGG | + | chr1_4:36681389-36681408 | None:intergenic | 55.0% | |
| GATTTCACGCTCGGCTGTTG+TGG | + | chr1_4:36681466-36681485 | None:intergenic | 55.0% | |
| AACAGCCGAGCTCGTCTTTG+AGG | + | chr1_4:36681550-36681569 | None:intergenic | 55.0% | |
| GGTGGTACGACTATGTTCCC+CGG | - | chr1_4:36681762-36681781 | Msa0161400:intron | 55.0% | |
| TGTTCCCCGGCATTGCTGAT+AGG | - | chr1_4:36681775-36681794 | Msa0161400:intron | 55.0% | |
| ! | GGTGCTGAGGGAAGCCAAAA+TGG | + | chr1_4:36681895-36681914 | None:intergenic | 55.0% |
| TTCCCTCAGCACCTTCCAAC+AGG | - | chr1_4:36681902-36681921 | Msa0161400:intron | 55.0% | |
| TCGTGGCAGCAGTCATGTCG+CGG | + | chr1_4:36679790-36679809 | None:intergenic | 60.0% | |
| TCCACGCCACACTGGTGTGA+TGG | - | chr1_4:36680204-36680223 | Msa0161400:CDS | 60.0% | |
| ACCATCACACCAGTGTGGCG+TGG | + | chr1_4:36680208-36680227 | None:intergenic | 60.0% | |
| CGCCACACTGGTGTGATGGT+TGG | - | chr1_4:36680208-36680227 | Msa0161400:CDS | 60.0% | |
| AGGTGGTTGCACCACCAGAG+AGG | - | chr1_4:36681844-36681863 | Msa0161400:intron | 60.0% | |
| GTAGGTCGTCCACGCCACAC+TGG | - | chr1_4:36680196-36680215 | Msa0161400:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 36678921 | 36682706 | 36678921 | ID=Msa0161400;Name=Msa0161400 |
| chr1_4 | mRNA | 36678921 | 36682706 | 36678921 | ID=Msa0161400-mRNA-1;Parent=Msa0161400;Name=Msa0161400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=233|1|1|1|0.75|0.6|5|281|377 |
| chr1_4 | exon | 36678921 | 36679267 | 36678921 | ID=Msa0161400-mRNA-1:exon:10824;Parent=Msa0161400-mRNA-1 |
| chr1_4 | exon | 36679704 | 36680317 | 36679704 | ID=Msa0161400-mRNA-1:exon:10823;Parent=Msa0161400-mRNA-1 |
| chr1_4 | exon | 36681086 | 36681479 | 36681086 | ID=Msa0161400-mRNA-1:exon:10822;Parent=Msa0161400-mRNA-1 |
| chr1_4 | exon | 36682053 | 36682125 | 36682053 | ID=Msa0161400-mRNA-1:exon:10821;Parent=Msa0161400-mRNA-1 |
| chr1_4 | exon | 36682487 | 36682706 | 36682487 | ID=Msa0161400-mRNA-1:exon:10820;Parent=Msa0161400-mRNA-1 |
| chr1_4 | five_prime_UTR | 36682487 | 36682706 | 36682487 | ID=Msa0161400-mRNA-1:five_prime_utr;Parent=Msa0161400-mRNA-1 |
| chr1_4 | five_prime_UTR | 36682113 | 36682125 | 36682113 | ID=Msa0161400-mRNA-1:five_prime_utr;Parent=Msa0161400-mRNA-1 |
| chr1_4 | CDS | 36682053 | 36682112 | 36682053 | ID=Msa0161400-mRNA-1:cds;Parent=Msa0161400-mRNA-1 |
| chr1_4 | CDS | 36681086 | 36681479 | 36681086 | ID=Msa0161400-mRNA-1:cds;Parent=Msa0161400-mRNA-1 |
| chr1_4 | CDS | 36679704 | 36680317 | 36679704 | ID=Msa0161400-mRNA-1:cds;Parent=Msa0161400-mRNA-1 |
| chr1_4 | CDS | 36679202 | 36679267 | 36679202 | ID=Msa0161400-mRNA-1:cds;Parent=Msa0161400-mRNA-1 |
| chr1_4 | three_prime_UTR | 36678921 | 36679201 | 36678921 | ID=Msa0161400-mRNA-1:three_prime_utr;Parent=Msa0161400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
