Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022260 | XP_013443410.1 | 99.735 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 0.0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022260 | sp|O81221|ACT_GOSHI | 98.143 | 377 | 7 | 0 | 1 | 377 | 1 | 377 | 0.0 | 774 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022260 | B7FIH3 | 99.735 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022260 | Msa0025160 | 0.803896 | 2.800526e-49 | -8.615850e-47 |
| Msa0022260 | Msa0048510 | 0.820862 | 5.482171e-53 | -8.615850e-47 |
| Msa0022260 | Msa0062340 | 0.828932 | 6.828482e-55 | -8.615850e-47 |
| Msa0022260 | Msa0077340 | 0.807595 | 4.680897e-50 | -8.615850e-47 |
| Msa0022260 | Msa0077560 | 0.862449 | 5.026774e-64 | -8.615850e-47 |
| Msa0022260 | Msa0118270 | 0.946555 | 3.691928e-105 | -8.615850e-47 |
| Msa0022260 | Msa0122330 | 0.826626 | 2.447208e-54 | -8.615850e-47 |
| Msa0022260 | Msa0123070 | 0.805835 | 1.102015e-49 | -8.615850e-47 |
| Msa0022260 | Msa0125360 | 0.813995 | 1.930325e-51 | -8.615850e-47 |
| Msa0022260 | Msa0161400 | 0.946334 | 5.628793e-105 | -8.615850e-47 |
| Msa0022260 | Msa0164290 | 0.881157 | 3.029529e-70 | -8.615850e-47 |
| Msa0022260 | Msa0190730 | 0.809963 | 1.459356e-50 | -8.615850e-47 |
| Msa0022260 | Msa0204950 | 0.811765 | 5.944714e-51 | -8.615850e-47 |
| Msa0022260 | Msa0249850 | 0.806069 | 9.840408e-50 | -8.615850e-47 |
| Msa0022260 | Msa0269210 | 0.842513 | 2.470373e-58 | -8.615850e-47 |
| Msa0022260 | Msa0281470 | 0.802690 | 4.976349e-49 | -8.615850e-47 |
| Msa0022260 | Msa0307270 | 0.826039 | 3.375256e-54 | -8.615850e-47 |
| Msa0022260 | Msa0320600 | 0.811204 | 7.871058e-51 | -8.615850e-47 |
| Msa0022260 | Msa0327670 | 0.800884 | 1.168833e-48 | -8.615850e-47 |
| Msa0022260 | Msa0354840 | 0.816688 | 4.859823e-52 | -8.615850e-47 |
| Msa0022260 | Msa0383000 | 0.810001 | 1.431949e-50 | -8.615850e-47 |
| Msa0022260 | Msa0401970 | 0.802224 | 6.208848e-49 | -8.615850e-47 |
| Msa0022260 | Msa0409830 | 0.818640 | 1.763851e-52 | -8.615850e-47 |
| Msa0022260 | Msa0416160 | 0.800295 | 1.541085e-48 | -8.615850e-47 |
| Msa0022260 | Msa0433150 | 0.802789 | 4.749339e-49 | -8.615850e-47 |
| Msa0022260 | Msa0436330 | 0.820583 | 6.351477e-53 | -8.615850e-47 |
| Msa0022260 | Msa0440350 | 0.830679 | 2.563188e-55 | -8.615850e-47 |
| Msa0022260 | Msa0481890 | 0.829521 | 4.914532e-55 | -8.615850e-47 |
| Msa0022260 | Msa0495300 | 0.815923 | 7.208241e-52 | -8.615850e-47 |
| Msa0022260 | Msa0502510 | 0.822314 | 2.531583e-53 | -8.615850e-47 |
| Msa0022260 | Msa0519760 | 0.835895 | 1.285853e-56 | -8.615850e-47 |
| Msa0022260 | Msa0519810 | 0.836754 | 7.773220e-57 | -8.615850e-47 |
| Msa0022260 | Msa0519840 | 0.833402 | 5.444283e-56 | -8.615850e-47 |
| Msa0022260 | Msa0528570 | 0.806950 | 6.414265e-50 | -8.615850e-47 |
| Msa0022260 | Msa0529030 | 0.802463 | 5.543506e-49 | -8.615850e-47 |
| Msa0022260 | Msa0574900 | 0.807898 | 4.036377e-50 | -8.615850e-47 |
| Msa0022260 | Msa0607800 | 0.838927 | 2.150041e-57 | -8.615850e-47 |
| Msa0022260 | Msa0621710 | 0.800060 | 1.720784e-48 | -8.615850e-47 |
| Msa0022260 | Msa0648040 | 0.825300 | 5.052313e-54 | -8.615850e-47 |
| Msa0022260 | Msa0690740 | 0.811402 | 7.128571e-51 | -8.615850e-47 |
| Msa0022260 | Msa0709440 | 0.830137 | 3.478018e-55 | -8.615850e-47 |
| Msa0022260 | Msa0716890 | 0.848781 | 4.925205e-60 | -8.615850e-47 |
| Msa0022260 | Msa0735780 | 0.804875 | 1.750684e-49 | -8.615850e-47 |
| Msa0022260 | Msa0743440 | 0.818606 | 1.795699e-52 | -8.615850e-47 |
| Msa0022260 | Msa0754430 | 0.810947 | 8.947980e-51 | -8.615850e-47 |
| Msa0022260 | Msa0754450 | 0.820486 | 6.687641e-53 | -8.615850e-47 |
| Msa0022260 | Msa0758030 | 0.809711 | 1.652822e-50 | -8.615850e-47 |
| Msa0022260 | Msa0837710 | 0.811892 | 5.577640e-51 | -8.615850e-47 |
| Msa0022260 | Msa0879920 | 0.802639 | 5.098851e-49 | -8.615850e-47 |
| Msa0022260 | Msa1072940 | 0.833288 | 5.810977e-56 | -8.615850e-47 |
| Msa0022260 | Msa1084530 | 0.832110 | 1.139558e-55 | -8.615850e-47 |
| Msa0022260 | Msa1104110 | 0.805157 | 1.528929e-49 | -8.615850e-47 |
| Msa0022260 | Msa1125820 | 0.828203 | 1.024101e-54 | -8.615850e-47 |
| Msa0022260 | Msa1125990 | 0.829038 | 6.435089e-55 | -8.615850e-47 |
| Msa0022260 | Msa1132990 | 0.803306 | 3.711871e-49 | -8.615850e-47 |
| Msa0022260 | Msa1160920 | 0.817070 | 3.989430e-52 | -8.615850e-47 |
| Msa0022260 | Msa1171290 | 0.829715 | 4.409133e-55 | -8.615850e-47 |
| Msa0022260 | Msa1192560 | 0.804616 | 1.983616e-49 | -8.615850e-47 |
| Msa0022260 | Msa1192590 | 0.801331 | 9.468225e-49 | -8.615850e-47 |
| Msa0022260 | Msa1218820 | 0.805413 | 1.350884e-49 | -8.615850e-47 |
| Msa0022260 | Msa1254540 | 0.802302 | 5.984843e-49 | -8.615850e-47 |
| Msa0022260 | Msa1263780 | 0.810498 | 1.118968e-50 | -8.615850e-47 |
| Msa0022260 | Msa1332950 | 0.807701 | 4.443934e-50 | -8.615850e-47 |
| Msa0022260 | Msa1365500 | 0.809351 | 1.975042e-50 | -8.615850e-47 |
| Msa0022260 | Msa1366150 | 0.828336 | 9.512936e-55 | -8.615850e-47 |
| Msa0022260 | Msa1368750 | 0.800679 | 1.287336e-48 | -8.615850e-47 |
| Msa0022260 | Msa1374790 | 0.802299 | 5.992433e-49 | -8.615850e-47 |
| Msa0022260 | Msa1384150 | 0.836161 | 1.100681e-56 | -8.615850e-47 |
| Msa0022260 | Msa1387440 | 0.859940 | 2.920129e-63 | -8.615850e-47 |
| Msa0022260 | Msa1405460 | 0.805603 | 1.232706e-49 | -8.615850e-47 |
| Msa0022260 | Msa1415540 | 0.806114 | 9.623614e-50 | -8.615850e-47 |
| Msa0022260 | Msa1427110 | 0.821673 | 3.563584e-53 | -8.615850e-47 |
| Msa0022260 | Msa1429070 | 0.817515 | 3.167864e-52 | -8.615850e-47 |
| Msa0022260 | Msa1450190 | 0.805357 | 1.388343e-49 | -8.615850e-47 |
| Msa0022260 | Msa1451820 | 0.804412 | 2.187131e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022260 | MtrunA17_Chr1g0175391 | 99.735 | 377 | 1 | 0 | 1 | 377 | 1 | 377 | 0.0 | 782 |
| Msa0022260 | MtrunA17_Chr2g0328091 | 98.408 | 377 | 6 | 0 | 1 | 377 | 1 | 377 | 0.0 | 775 |
| Msa0022260 | MtrunA17_Chr7g0258721 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 770 |
| Msa0022260 | MtrunA17_Chr6g0448881 | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 769 |
| Msa0022260 | MtrunA17_Chr7g0223901 | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 766 |
| Msa0022260 | MtrunA17_Chr3g0129641 | 95.491 | 377 | 17 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0022260 | MtrunA17_Chr2g0278591 | 93.634 | 377 | 24 | 0 | 1 | 377 | 1 | 377 | 0.0 | 749 |
| Msa0022260 | MtrunA17_Chr7g0224401 | 43.272 | 379 | 201 | 3 | 10 | 374 | 7 | 385 | 5.64e-120 | 352 |
| Msa0022260 | MtrunA17_Chr5g0427591 | 37.892 | 446 | 204 | 11 | 1 | 376 | 1 | 443 | 3.85e-94 | 288 |
| Msa0022260 | MtrunA17_Chr8g0361001 | 37.892 | 446 | 204 | 11 | 1 | 376 | 1 | 443 | 5.74e-94 | 288 |
| Msa0022260 | MtrunA17_Chr8g0381261 | 34.550 | 411 | 219 | 8 | 10 | 372 | 10 | 418 | 9.19e-72 | 230 |
| Msa0022260 | MtrunA17_Chr3g0089031 | 37.766 | 376 | 208 | 9 | 11 | 377 | 5 | 363 | 3.62e-68 | 219 |
| Msa0022260 | MtrunA17_Chr2g0305361 | 27.650 | 434 | 248 | 7 | 8 | 377 | 6 | 437 | 1.45e-56 | 191 |
| Msa0022260 | MtrunA17_Chr3g0080021 | 30.640 | 297 | 182 | 9 | 91 | 371 | 179 | 467 | 3.96e-40 | 148 |
| Msa0022260 | MtrunA17_Chr8g0369101 | 31.399 | 293 | 174 | 10 | 91 | 366 | 187 | 469 | 9.62e-36 | 136 |
| Msa0022260 | MtrunA17_Chr3g0111971 | 29.365 | 252 | 159 | 7 | 9 | 245 | 21 | 268 | 2.28e-22 | 99.0 |
| Msa0022260 | MtrunA17_Chr3g0111971 | 33.607 | 122 | 78 | 2 | 250 | 368 | 586 | 707 | 1.63e-15 | 78.2 |
| Msa0022260 | MtrunA17_Chr8g0336071 | 41.053 | 95 | 56 | 0 | 105 | 199 | 1 | 95 | 9.90e-20 | 83.2 |
| Msa0022260 | MtrunA17_Chr8g0336061 | 41.304 | 92 | 41 | 1 | 241 | 319 | 12 | 103 | 5.45e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0022260 | AT3G53750.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0022260 | AT3G53750.2 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0022260 | AT2G37620.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0022260 | AT2G37620.3 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0022260 | AT2G37620.2 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0022260 | AT2G37620.4 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 764 |
| Msa0022260 | AT3G46520.2 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0022260 | AT3G46520.1 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0022260 | AT5G09810.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0022260 | AT3G12110.1 | 96.286 | 377 | 14 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0022260 | AT5G59370.2 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0022260 | AT5G59370.1 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0022260 | AT3G18780.2 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 746 |
| Msa0022260 | AT3G18780.3 | 92.838 | 377 | 27 | 0 | 1 | 377 | 1 | 377 | 0.0 | 746 |
| Msa0022260 | AT1G49240.1 | 92.573 | 377 | 28 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0022260 | AT3G18780.1 | 92.758 | 359 | 26 | 0 | 1 | 359 | 1 | 359 | 0.0 | 705 |
| Msa0022260 | AT2G42100.1 | 84.783 | 368 | 56 | 0 | 10 | 377 | 11 | 378 | 0.0 | 676 |
| Msa0022260 | AT2G42090.1 | 70.541 | 370 | 104 | 1 | 7 | 376 | 1 | 365 | 0.0 | 566 |
| Msa0022260 | AT2G42170.1 | 78.012 | 332 | 70 | 1 | 46 | 377 | 1 | 329 | 0.0 | 558 |
| Msa0022260 | AT2G42170.3 | 78.012 | 332 | 70 | 1 | 46 | 377 | 1 | 329 | 0.0 | 558 |
| Msa0022260 | AT2G42170.4 | 77.885 | 312 | 66 | 1 | 46 | 357 | 1 | 309 | 0.0 | 521 |
| Msa0022260 | AT2G42170.2 | 77.885 | 312 | 66 | 1 | 46 | 357 | 1 | 309 | 0.0 | 521 |
| Msa0022260 | AT2G42170.5 | 78.319 | 226 | 46 | 1 | 152 | 377 | 9 | 231 | 1.47e-131 | 376 |
| Msa0022260 | AT3G27000.1 | 44.327 | 379 | 197 | 4 | 10 | 374 | 7 | 385 | 3.56e-122 | 358 |
| Msa0022260 | AT1G18450.1 | 37.246 | 443 | 208 | 9 | 1 | 376 | 1 | 440 | 2.78e-95 | 291 |
| Msa0022260 | AT1G13180.1 | 34.615 | 416 | 212 | 11 | 10 | 372 | 9 | 417 | 8.40e-72 | 231 |
| Msa0022260 | AT3G60830.1 | 37.731 | 379 | 212 | 9 | 7 | 377 | 1 | 363 | 1.91e-67 | 217 |
| Msa0022260 | AT3G33520.1 | 30.166 | 421 | 236 | 7 | 10 | 377 | 5 | 420 | 4.30e-58 | 195 |
| Msa0022260 | AT5G56180.3 | 31.690 | 284 | 169 | 9 | 91 | 358 | 50 | 324 | 2.60e-35 | 132 |
| Msa0022260 | AT5G56180.1 | 31.690 | 284 | 169 | 9 | 91 | 358 | 182 | 456 | 1.57e-34 | 133 |
| Msa0022260 | AT3G12380.2 | 29.572 | 257 | 158 | 6 | 9 | 245 | 21 | 274 | 3.23e-25 | 107 |
| Msa0022260 | AT3G12380.2 | 33.793 | 145 | 92 | 2 | 228 | 368 | 572 | 716 | 2.68e-16 | 81.3 |
| Msa0022260 | AT3G12380.1 | 29.412 | 255 | 155 | 6 | 9 | 245 | 21 | 268 | 1.56e-24 | 105 |
| Msa0022260 | AT3G12380.1 | 33.793 | 145 | 92 | 2 | 228 | 368 | 566 | 710 | 2.67e-16 | 81.3 |
| Msa0022260 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.26e-23 | 95.1 |
| Msa0022260 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.26e-23 | 95.1 |
| Msa0022260 | AT5G56180.2 | 32.673 | 202 | 113 | 8 | 91 | 281 | 182 | 371 | 1.29e-19 | 89.7 |
| Msa0022260 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 2.93e-12 | 64.7 |
Find 119 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACCTCTTGTTTGTGATAA+TGG | 0.154159 | 1_1:-41593919 | Msa0022260:CDS |
| ATAGGTATTGTTCTTGATTC+TGG | 0.193204 | 1_1:-41592106 | Msa0022260:intron |
| CTGGATTGGAGGCTCCATTT+TGG | 0.220933 | 1_1:-41591534 | Msa0022260:CDS |
| AGCATGGAATTGTTAGTAAC+TGG | 0.268065 | 1_1:-41593147 | Msa0022260:CDS |
| ATAGCTCTTCTATAATAAAA+TGG | 0.300250 | 1_1:+41590811 | None:intergenic |
| TGTTAGTAACTGGGATGATA+TGG | 0.302766 | 1_1:-41593137 | Msa0022260:CDS |
| CATTCATTTCGGAGATTCTA+AGG | 0.312867 | 1_1:-41594329 | Msa0022260:intron |
| GTGATGAAGCTCAATCAAAA+AGG | 0.325898 | 1_1:-41593198 | Msa0022260:CDS |
| GTTCACAGGAAATGCTTCTA+AGG | 0.326765 | 1_1:-41591001 | Msa0022260:exon |
| AGAAGAACTGGATGTTCTTC+AGG | 0.338859 | 1_1:+41593070 | None:intergenic |
| ACCAAGTAGCATGAAAATTA+AGG | 0.346175 | 1_1:-41591588 | Msa0022260:CDS |
| AACAGCCGAGCTCGTCTTTG+AGG | 0.347903 | 1_1:+41591865 | None:intergenic |
| CTAACAATTCCATGCTCAAT+TGG | 0.355777 | 1_1:+41593154 | None:intergenic |
| ACACGTTGTTTCATTCATTT+CGG | 0.361743 | 1_1:-41594340 | Msa0022260:five_prime_UTR |
| ATCTATCTAAATTGAATTTG+AGG | 0.361879 | 1_1:-41594503 | Msa0022260:five_prime_UTR |
| TAATTGCAGGCTGGATTTGC+CGG | 0.363107 | 1_1:-41593316 | Msa0022260:intron |
| TCCACACGCAATCCTGCGTT+TGG | 0.371608 | 1_1:-41592038 | Msa0022260:CDS |
| CGTGGACGACCTACAATACT+AGG | 0.377152 | 1_1:+41593268 | None:intergenic |
| GGTGCTGAGGGAAGCCAAAA+TGG | 0.378341 | 1_1:+41591520 | None:intergenic |
| CACTGGTGTGATGGTTGGTA+TGG | 0.381213 | 1_1:-41593242 | Msa0022260:CDS |
| CTTGTTTGTGATAATGGAAC+TGG | 0.393561 | 1_1:-41593913 | Msa0022260:CDS |
| GATATTAGAAAGGATCTCTA+TGG | 0.393879 | 1_1:-41591689 | Msa0022260:CDS |
| AGCTATGTATGTTGCCATTC+AGG | 0.402911 | 1_1:-41592972 | Msa0022260:CDS |
| ATCCTGCGTTTGGATCTTGC+AGG | 0.408141 | 1_1:-41592028 | Msa0022260:CDS |
| CGATTAGCCTTTGGATTAAG+TGG | 0.413728 | 1_1:+41593037 | None:intergenic |
| AGGAAGTATAGTGTCTGGAT+TGG | 0.419464 | 1_1:-41591548 | Msa0022260:CDS |
| GATGGCTGGAAGAGTACTTC+AGG | 0.422610 | 1_1:+41591779 | None:intergenic |
| TGTTCCCCGGCATTGCTGAT+AGG | 0.428746 | 1_1:-41591637 | Msa0022260:CDS |
| CGCCCTTGGTGCATCATCTC+CGG | 0.435198 | 1_1:+41593297 | None:intergenic |
| TATGCTAGTGGCCGTACAAC+CGG | 0.439242 | 1_1:-41592935 | Msa0022260:intron |
| TAATGGAACTGGAATGGTTA+AGG | 0.441453 | 1_1:-41593902 | Msa0022260:intron |
| GCTATGTATTGTGACTGATT+TGG | 0.445766 | 1_1:-41590793 | Msa0022260:three_prime_UTR |
| TTCCCTCAGCACCTTCCAAC+AGG | 0.446388 | 1_1:-41591510 | Msa0022260:intron |
| TGAGGTACCCGCGTTGTTGT+TGG | 0.447988 | 1_1:+41594433 | None:intergenic |
| CTCTTCCAGCCATCCATGAT+TGG | 0.448268 | 1_1:-41591770 | Msa0022260:CDS |
| ATACATAGCTGGAGCATTGA+AGG | 0.451630 | 1_1:+41592985 | None:intergenic |
| AAGTATAGTGTCTGGATTGG+AGG | 0.453134 | 1_1:-41591545 | Msa0022260:CDS |
| AGGGCATATCCTTCATAGAT+AGG | 0.454246 | 1_1:+41592061 | None:intergenic |
| GATGGACAGGTGATCACAAT+AGG | 0.457168 | 1_1:-41591821 | Msa0022260:CDS |
| AAGGCTGAATATGATGAATC+AGG | 0.458861 | 1_1:-41591034 | Msa0022260:CDS |
| AAGCGAAAGCACGGCCTGAA+TGG | 0.462189 | 1_1:+41592958 | None:intergenic |
| ATTGTGATCACCTGTCCATC+AGG | 0.463240 | 1_1:+41591824 | None:intergenic |
| GATGAGATAGTGGTATGTAT+TGG | 0.465957 | 1_1:-41590760 | Msa0022260:three_prime_UTR |
| CTCATCCTATCAGCAATGCC+GGG | 0.468005 | 1_1:+41591632 | None:intergenic |
| GGTGCTTCAGTGAGAAGAAC+TGG | 0.478493 | 1_1:+41593058 | None:intergenic |
| CATTTCCTGTGAACAATTGA+AGG | 0.480733 | 1_1:+41591010 | None:intergenic |
| TTCATAATCAAGAGCTATGT+AGG | 0.480816 | 1_1:+41591901 | None:intergenic |
| TAACAATTCCATGCTCAATT+GGG | 0.481241 | 1_1:+41593155 | None:intergenic |
| ATTGTTCTTGATTCTGGAGA+TGG | 0.486571 | 1_1:-41592100 | Msa0022260:CDS |
| GCGGTGTTCCCTAGTATTGT+AGG | 0.487449 | 1_1:-41593277 | Msa0022260:CDS |
| CAGAGAGGAAGTATAGTGTC+TGG | 0.492085 | 1_1:-41591553 | Msa0022260:CDS |
| AACGCAGGATTGCGTGTGGA+AGG | 0.498417 | 1_1:+41592041 | None:intergenic |
| CTATGAGTTACCTGATGGAC+AGG | 0.498962 | 1_1:-41591834 | Msa0022260:CDS |
| AGGAGCTTCCATACCAATCA+TGG | 0.501773 | 1_1:+41591757 | None:intergenic |
| GGGATGATATGGAAAAGATC+TGG | 0.506672 | 1_1:-41593126 | Msa0022260:CDS |
| AAGAATCTTTACCGGTTGTA+CGG | 0.508172 | 1_1:+41592924 | None:intergenic |
| GTGCTTTCGCTTTATGCTAG+TGG | 0.509701 | 1_1:-41592947 | Msa0022260:CDS |
| TATTTATATGTTGGGATGAG+AGG | 0.517815 | 1_1:-41590871 | Msa0022260:three_prime_UTR |
| GCTCATCCTATCAGCAATGC+CGG | 0.518030 | 1_1:+41591631 | None:intergenic |
| GATTTCACGCTCGGCTGTTG+TGG | 0.522000 | 1_1:+41591949 | None:intergenic |
| CAGACACTATACTTCCTCTC+TGG | 0.523127 | 1_1:+41591554 | None:intergenic |
| CACACAGTTCCTATCTATGA+AGG | 0.525553 | 1_1:-41592070 | Msa0022260:CDS |
| CCATACCAATCATGGATGGC+TGG | 0.531059 | 1_1:+41591765 | None:intergenic |
| GTCTCTCACGATTTCACGCT+CGG | 0.537921 | 1_1:+41591940 | None:intergenic |
| CCAGCCATCCATGATTGGTA+TGG | 0.540901 | 1_1:-41591765 | Msa0022260:CDS |
| TTCAGGACAACGGAAACGTT+CGG | 0.541873 | 1_1:+41591796 | None:intergenic |
| CAGGCCCTTCAATTGTTCAC+AGG | 0.542188 | 1_1:-41591015 | Msa0022260:CDS |
| ATGAAAATCTTAACCGAGCG+TGG | 0.549893 | 1_1:-41591983 | Msa0022260:CDS |
| ATACCTGTTGGAAGGTGCTG+AGG | 0.550602 | 1_1:+41591507 | None:intergenic |
| GATGGTTGGTATGGGACAAA+AGG | 0.552916 | 1_1:-41593233 | Msa0022260:CDS |
| TGAATGGCAACATACATAGC+TGG | 0.554069 | 1_1:+41592974 | None:intergenic |
| ATACTAGGGAACACCGCCCT+TGG | 0.561168 | 1_1:+41593283 | None:intergenic |
| TATGTTGTTTCATGTATACC+AGG | 0.569084 | 1_1:+41591737 | None:intergenic |
| CTAAAGTACCCAATTGAGCA+TGG | 0.570119 | 1_1:-41593163 | Msa0022260:CDS |
| AAGAGCTATGAGTTACCTGA+TGG | 0.572599 | 1_1:-41591839 | Msa0022260:CDS |
| GTGTGATGTCGATATTAGAA+AGG | 0.572715 | 1_1:-41591699 | Msa0022260:CDS |
| TCCACGCCACACTGGTGTGA+TGG | 0.574722 | 1_1:-41593251 | Msa0022260:CDS |
| ATGATTGGTATGGAAGCTCC+TGG | 0.576789 | 1_1:-41591755 | Msa0022260:CDS |
| AGAAACCTCAAAGACGAGCT+CGG | 0.577050 | 1_1:-41591870 | Msa0022260:CDS |
| GAACATGTCTTGTGTGGTTG+AGG | 0.577891 | 1_1:+41594415 | None:intergenic |
| ACGCAGGATTGCGTGTGGAA+GGG | 0.581046 | 1_1:+41592042 | None:intergenic |
| CGCCACACTGGTGTGATGGT+TGG | 0.586183 | 1_1:-41593247 | Msa0022260:CDS |
| GAGCAAGGAGATCACAGCAT+TGG | 0.587533 | 1_1:-41591612 | Msa0022260:CDS |
| TACCTGTTGGAAGGTGCTGA+GGG | 0.587542 | 1_1:+41591508 | None:intergenic |
| TTGTGATAATGGAACTGGAA+TGG | 0.590034 | 1_1:-41593908 | Msa0022260:CDS |
| ACCATCACACCAGTGTGGCG+TGG | 0.593745 | 1_1:+41593250 | None:intergenic |
| TATATATTCGATAATATAGA+CGG | 0.596384 | 1_1:-41594531 | None:intergenic |
| GTTCCATTATCACAAACAAG+AGG | 0.600317 | 1_1:+41593916 | None:intergenic |
| TGCCGGAGATGATGCACCAA+GGG | 0.600516 | 1_1:-41593299 | Msa0022260:CDS |
| ACACTATACTTCCTCTCTGG+TGG | 0.604108 | 1_1:+41591557 | None:intergenic |
| ATTTCCTGTGAACAATTGAA+GGG | 0.604151 | 1_1:+41591011 | None:intergenic |
| TTTAAAACCAACAACAACGC+GGG | 0.615333 | 1_1:-41594440 | Msa0022260:five_prime_UTR |
| ACTAGCATAAAGCGAAAGCA+CGG | 0.615597 | 1_1:+41592949 | None:intergenic |
| TATGGAAACATCGTATTGAG+TGG | 0.620418 | 1_1:-41591671 | Msa0022260:CDS |
| GGTGGTACGACTATGTTCCC+CGG | 0.621683 | 1_1:-41591650 | Msa0022260:CDS |
| GGACAAAAGGATGCATATGT+TGG | 0.623959 | 1_1:-41593220 | Msa0022260:CDS |
| TGAAATCGTGAGAGACGTGA+AGG | 0.629620 | 1_1:-41591933 | Msa0022260:CDS |
| CGGAGATGATGCACCAAGGG+CGG | 0.631181 | 1_1:-41593296 | Msa0022260:CDS |
| GCATGGAATTGTTAGTAACT+GGG | 0.633326 | 1_1:-41593146 | Msa0022260:CDS |
| CATGCACTATACCTGTTGGA+AGG | 0.635341 | 1_1:+41591499 | None:intergenic |
| GCTTCCATACCAATCATGGA+TGG | 0.638459 | 1_1:+41591761 | None:intergenic |
| TCCAAACGCAGGATTGCGTG+TGG | 0.640726 | 1_1:+41592037 | None:intergenic |
| ACTGGTGTGATGGTTGGTAT+GGG | 0.640914 | 1_1:-41593241 | Msa0022260:CDS |
| GGTGAAAGAGTATCCACGCT+CGG | 0.643494 | 1_1:+41591970 | None:intergenic |
| TGAAGCACCACTTAATCCAA+AGG | 0.643775 | 1_1:-41593044 | Msa0022260:CDS |
| CATTGCTGATAGGATGAGCA+AGG | 0.644331 | 1_1:-41591627 | Msa0022260:CDS |
| AAGTAGCATGAAAATTAAGG+TGG | 0.656638 | 1_1:-41591585 | Msa0022260:CDS |
| GTGGACGACCTACAATACTA+GGG | 0.661189 | 1_1:+41593269 | None:intergenic |
| TTGCCGGAGATGATGCACCA+AGG | 0.662970 | 1_1:-41593300 | Msa0022260:CDS |
| GGAAACATCGTATTGAGTGG+TGG | 0.669837 | 1_1:-41591668 | Msa0022260:CDS |
| TTTAACGAACATGTCTTGTG+TGG | 0.673057 | 1_1:+41594409 | None:intergenic |
| AATGCAGATGTGGATTGCAA+AGG | 0.677558 | 1_1:-41591053 | Msa0022260:intron |
| TCATCCTATCAGCAATGCCG+GGG | 0.683199 | 1_1:+41591633 | None:intergenic |
| GTAGGTCGTCCACGCCACAC+TGG | 0.686011 | 1_1:-41593259 | Msa0022260:CDS |
| GACCTGCAAGATCCAAACGC+AGG | 0.690015 | 1_1:+41592026 | None:intergenic |
| GGAAGAGTACTTCAGGACAA+CGG | 0.707065 | 1_1:+41591786 | None:intergenic |
| AGGTGGTTGCACCACCAGAG+AGG | 0.708305 | 1_1:-41591568 | Msa0022260:CDS |
| CTTCATAGATAGGAACTGTG+TGG | 0.711555 | 1_1:+41592071 | None:intergenic |
| TACCAACCATCACACCAGTG+TGG | 0.726907 | 1_1:+41593245 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAAGTTTTGTAATGAAA+TGG | - | chr1_1:41591157-41591176 | Msa0022260:intron | 15.0% |
| !!! | TTTTATAATGTTTTAAATCG+TGG | + | chr1_1:41591600-41591619 | None:intergenic | 15.0% |
| !!! | TTTTTATCAAATTACTTGTA+TGG | + | chr1_1:41592465-41592484 | None:intergenic | 15.0% |
| !! | AACTTTAAATATCCAAATAA+TGG | - | chr1_1:41593011-41593030 | Msa0022260:CDS | 15.0% |
| !! | AAAATTACAAAACCATTATT+TGG | + | chr1_1:41593026-41593045 | None:intergenic | 15.0% |
| !!! | TTTAAAGTTAGAAAATGAAA+TGG | + | chr1_1:41593052-41593071 | None:intergenic | 15.0% |
| !!! | TTATTTTCCTTTCATTTTAA+AGG | + | chr1_1:41593801-41593820 | None:intergenic | 15.0% |
| !!! | TTTTCTTCTATTTATATGTT+GGG | - | chr1_1:41594369-41594388 | Msa0022260:five_prime_UTR | 15.0% |
| !! | ATCTATCTAAATTGAATTTG+AGG | - | chr1_1:41590745-41590764 | Msa0022260:three_prime_UTR | 20.0% |
| !! | TAATGAGTTAGATAGAAATA+TGG | - | chr1_1:41591646-41591665 | Msa0022260:CDS | 20.0% |
| !! | ATATCTTAACAATTCTCAAA+AGG | + | chr1_1:41592363-41592382 | None:intergenic | 20.0% |
| !! | GTTAAGATATATATGAAAAG+TGG | - | chr1_1:41592373-41592392 | Msa0022260:intron | 20.0% |
| !!! | ATATGTTTGAAATGATAGAA+AGG | - | chr1_1:41592648-41592667 | Msa0022260:intron | 20.0% |
| !!! | AAGTTTTGATTCCATTTTTT+TGG | + | chr1_1:41592996-41593015 | None:intergenic | 20.0% |
| !! | TCTTAAACCACATTAAAAAA+GGG | + | chr1_1:41594150-41594169 | None:intergenic | 20.0% |
| !!! | GTTTTCTTCTATTTATATGT+TGG | - | chr1_1:41594368-41594387 | Msa0022260:five_prime_UTR | 20.0% |
| !! | ATAGCTCTTCTATAATAAAA+TGG | + | chr1_1:41594440-41594459 | None:intergenic | 20.0% |
| !!! | GTTGTTGTTGGTTTTAAAAA+AGG | + | chr1_1:41590806-41590825 | None:intergenic | 25.0% |
| ! | ATGATGATAGAAAATGAGAA+AGG | + | chr1_1:41591000-41591019 | None:intergenic | 25.0% |
| ! | GTGCAGTAATCAATAAAAAA+TGG | - | chr1_1:41591289-41591308 | Msa0022260:intron | 25.0% |
| ! | CTAATCAAATAAGATCAACA+AGG | + | chr1_1:41591387-41591406 | None:intergenic | 25.0% |
| !! | CTTGTTGATCTTATTTGATT+AGG | - | chr1_1:41591385-41591404 | Msa0022260:intron | 25.0% |
| !! | GATCTTATTTGATTAGGTAA+AGG | - | chr1_1:41591391-41591410 | Msa0022260:intron | 25.0% |
| ! | CAATTGTATAACACATATCA+AGG | + | chr1_1:41591779-41591798 | None:intergenic | 25.0% |
| !! | TACCACAATTTAACACATTT+TGG | - | chr1_1:41591857-41591876 | Msa0022260:CDS | 25.0% |
| ! | AACCAAAATGTGTTAAATTG+TGG | + | chr1_1:41591862-41591881 | None:intergenic | 25.0% |
| !! | GATGTGTTTTATATAATTGC+AGG | - | chr1_1:41591919-41591938 | Msa0022260:CDS | 25.0% |
| ! | AAACATAGAAGAATCTTTAC+CGG | + | chr1_1:41592335-41592354 | None:intergenic | 25.0% |
| ! | GAATTTGCAGGAATTAATAA+TGG | - | chr1_1:41592571-41592590 | Msa0022260:intron | 25.0% |
| !!! | TTTTTGGTAATTTGACAGAA+TGG | + | chr1_1:41592980-41592999 | None:intergenic | 25.0% |
| ! | CTGTCAAATTACCAAAAAAA+TGG | - | chr1_1:41592982-41593001 | Msa0022260:CDS | 25.0% |
| !!! | TTAGAGACCTTTAAAATGAA+AGG | - | chr1_1:41593791-41593810 | Msa0022260:intron | 25.0% |
| ! | GAAAGGAAAATAATGCATAA+AGG | - | chr1_1:41593808-41593827 | Msa0022260:intron | 25.0% |
| ! | GTTTATATGAGCTTATCTAT+AGG | - | chr1_1:41593875-41593894 | Msa0022260:intron | 25.0% |
| ! | TGTTTATACATAGCACATAT+AGG | - | chr1_1:41594064-41594083 | Msa0022260:intron | 25.0% |
| !!! | TGAAATACCCTTTTTTAATG+TGG | - | chr1_1:41594140-41594159 | Msa0022260:intron | 25.0% |
| ! | CTCTTAAACCACATTAAAAA+AGG | + | chr1_1:41594151-41594170 | None:intergenic | 25.0% |
| !!! | CTTTTTTAATGTGGTTTAAG+AGG | - | chr1_1:41594149-41594168 | Msa0022260:intron | 25.0% |
| ! | CTAAGAAATACCATAAAAAC+TGG | - | chr1_1:41594288-41594307 | Msa0022260:intron | 25.0% |
| !!! | TTTGTATTTTGATGAGATAG+TGG | - | chr1_1:41594478-41594497 | Msa0022260:five_prime_UTR | 25.0% |
| !!! | TTTTAAAACCAACAACAACG+CGG | - | chr1_1:41590807-41590826 | Msa0022260:three_prime_UTR | 30.0% |
| ! | ACACGTTGTTTCATTCATTT+CGG | - | chr1_1:41590908-41590927 | Msa0022260:three_prime_UTR | 30.0% |
| ! | TAGATCTCATTTTCTACGTT+TGG | - | chr1_1:41591191-41591210 | Msa0022260:intron | 30.0% |
| !! | TCATTTTCTACGTTTGGAAT+TGG | - | chr1_1:41591197-41591216 | Msa0022260:intron | 30.0% |
| TCAAATAAGATCAACAAGGT+TGG | + | chr1_1:41591383-41591402 | None:intergenic | 30.0% | |
| !! | AGGTAAAGGTTTTTCGAAAA+AGG | - | chr1_1:41591405-41591424 | Msa0022260:intron | 30.0% |
| TGGCTTATGATAGAACATTA+TGG | - | chr1_1:41591666-41591685 | Msa0022260:CDS | 30.0% | |
| TCTTGTAATCTAGTAGTACA+TGG | - | chr1_1:41591753-41591772 | Msa0022260:CDS | 30.0% | |
| ! | TTTTGTAATCAAGCACTACT+TGG | - | chr1_1:41591892-41591911 | Msa0022260:CDS | 30.0% |
| ! | TGTTTTATATAATTGCAGGC+TGG | - | chr1_1:41591923-41591942 | Msa0022260:CDS | 30.0% |
| TGATGAAGCTCAATCAAAAA+GGG | - | chr1_1:41592051-41592070 | Msa0022260:CDS | 30.0% | |
| TAACAATTCCATGCTCAATT+GGG | + | chr1_1:41592096-41592115 | None:intergenic | 30.0% | |
| ! | GGATTATGACTCTAATTTTG+AGG | + | chr1_1:41592444-41592463 | None:intergenic | 30.0% |
| GAATTCTAATGAAATACGAG+TGG | + | chr1_1:41592521-41592540 | None:intergenic | 30.0% | |
| AAACGATCTGCAAATGAATA+TGG | - | chr1_1:41592542-41592561 | Msa0022260:intron | 30.0% | |
| ! | ATATGGATTGTAGAATTTGC+AGG | - | chr1_1:41592559-41592578 | Msa0022260:intron | 30.0% |
| ! | TGTTTGAAAAATGAAGCACT+TGG | - | chr1_1:41592703-41592722 | Msa0022260:intron | 30.0% |
| TTGTAGACTTGACATTGAAA+TGG | - | chr1_1:41593093-41593112 | Msa0022260:CDS | 30.0% | |
| TGTAGACTTGACATTGAAAT+GGG | - | chr1_1:41593094-41593113 | Msa0022260:CDS | 30.0% | |
| ! | CGTTGTTTACATCTTGTTAT+AGG | - | chr1_1:41593124-41593143 | Msa0022260:CDS | 30.0% |
| ! | ATAGGTATTGTTCTTGATTC+TGG | - | chr1_1:41593142-41593161 | Msa0022260:CDS | 30.0% |
| TTCATAATCAAGAGCTATGT+AGG | + | chr1_1:41593350-41593369 | None:intergenic | 30.0% | |
| !! | TATGTTGTTTCATGTATACC+AGG | + | chr1_1:41593514-41593533 | None:intergenic | 30.0% |
| GATATTAGAAAGGATCTCTA+TGG | - | chr1_1:41593559-41593578 | Msa0022260:intron | 30.0% | |
| ACCAAGTAGCATGAAAATTA+AGG | - | chr1_1:41593660-41593679 | Msa0022260:intron | 30.0% | |
| ! | ACCTTAATTTTCATGCTACT+TGG | + | chr1_1:41593664-41593683 | None:intergenic | 30.0% |
| AAGTAGCATGAAAATTAAGG+TGG | - | chr1_1:41593663-41593682 | Msa0022260:intron | 30.0% | |
| ! | TAATAGTCAACAAGCTTGTT+TGG | - | chr1_1:41593848-41593867 | Msa0022260:intron | 30.0% |
| GATAAGCACTTATGCTATAA+GGG | - | chr1_1:41594086-41594105 | Msa0022260:intron | 30.0% | |
| ATTTCCTGTGAACAATTGAA+GGG | + | chr1_1:41594240-41594259 | None:intergenic | 30.0% | |
| AATACCATAAAAACTGGTTG+AGG | - | chr1_1:41594294-41594313 | Msa0022260:intron | 30.0% | |
| TATTTATATGTTGGGATGAG+AGG | - | chr1_1:41594377-41594396 | Msa0022260:five_prime_UTR | 30.0% | |
| ! | TTTAAAACCAACAACAACGC+GGG | - | chr1_1:41590808-41590827 | Msa0022260:three_prime_UTR | 35.0% |
| TTTAACGAACATGTCTTGTG+TGG | + | chr1_1:41590842-41590861 | None:intergenic | 35.0% | |
| CATTCATTTCGGAGATTCTA+AGG | - | chr1_1:41590919-41590938 | Msa0022260:three_prime_UTR | 35.0% | |
| ! | CAACCTCTTGTTTGTGATAA+TGG | - | chr1_1:41591329-41591348 | Msa0022260:intron | 35.0% |
| GTTCCATTATCACAAACAAG+AGG | + | chr1_1:41591335-41591354 | None:intergenic | 35.0% | |
| !! | CTTGTTTGTGATAATGGAAC+TGG | - | chr1_1:41591335-41591354 | Msa0022260:intron | 35.0% |
| !! | TTGTGATAATGGAACTGGAA+TGG | - | chr1_1:41591340-41591359 | Msa0022260:intron | 35.0% |
| TAATGGAACTGGAATGGTTA+AGG | - | chr1_1:41591346-41591365 | Msa0022260:intron | 35.0% | |
| ATAAGATCAACAAGGTTGGA+TGG | + | chr1_1:41591379-41591398 | None:intergenic | 35.0% | |
| TCCATATAACTAACCTCACT+TGG | - | chr1_1:41591699-41591718 | Msa0022260:CDS | 35.0% | |
| ! | ACCAAGTGAGGTTAGTTATA+TGG | + | chr1_1:41591703-41591722 | None:intergenic | 35.0% |
| ATATAACTAACCTCACTTGG+TGG | - | chr1_1:41591702-41591721 | Msa0022260:CDS | 35.0% | |
| TATAACTAACCTCACTTGGT+GGG | - | chr1_1:41591703-41591722 | Msa0022260:CDS | 35.0% | |
| GTGATGAAGCTCAATCAAAA+AGG | - | chr1_1:41592050-41592069 | Msa0022260:CDS | 35.0% | |
| GATGAAGCTCAATCAAAAAG+GGG | - | chr1_1:41592052-41592071 | Msa0022260:CDS | 35.0% | |
| CTAACAATTCCATGCTCAAT+TGG | + | chr1_1:41592097-41592116 | None:intergenic | 35.0% | |
| AGCATGGAATTGTTAGTAAC+TGG | - | chr1_1:41592101-41592120 | Msa0022260:CDS | 35.0% | |
| GCATGGAATTGTTAGTAACT+GGG | - | chr1_1:41592102-41592121 | Msa0022260:CDS | 35.0% | |
| TGTTAGTAACTGGGATGATA+TGG | - | chr1_1:41592111-41592130 | Msa0022260:intron | 35.0% | |
| !!! | ATTTTCTCACGATTAGCCTT+TGG | + | chr1_1:41592223-41592242 | None:intergenic | 35.0% |
| ! | AAGAATCTTTACCGGTTGTA+CGG | + | chr1_1:41592327-41592346 | None:intergenic | 35.0% |
| TGCAGGAATTAATAATGGCA+TGG | - | chr1_1:41592576-41592595 | Msa0022260:intron | 35.0% | |
| ! | AGTTTTCATCCTGCAATATG+TGG | - | chr1_1:41592918-41592937 | Msa0022260:intron | 35.0% |
| AGTGAAGCTGACCTATAATT+TGG | - | chr1_1:41592952-41592971 | Msa0022260:CDS | 35.0% | |
| ! | ACAGAATGGTGCCAAATTAT+AGG | + | chr1_1:41592966-41592985 | None:intergenic | 35.0% |
| ! | ATTGTTCTTGATTCTGGAGA+TGG | - | chr1_1:41593148-41593167 | Msa0022260:CDS | 35.0% |
| ! | CTCGGTTAAGATTTTCATGA+GGG | + | chr1_1:41593263-41593282 | None:intergenic | 35.0% |
| GTGTGATGTCGATATTAGAA+AGG | - | chr1_1:41593549-41593568 | Msa0022260:intron | 35.0% | |
| TATGGAAACATCGTATTGAG+TGG | - | chr1_1:41593577-41593596 | Msa0022260:intron | 35.0% | |
| GGATAAGCACTTATGCTATA+AGG | - | chr1_1:41594085-41594104 | Msa0022260:intron | 35.0% | |
| CATCTGCATTAGGAAAGAAA+AGG | + | chr1_1:41594185-41594204 | None:intergenic | 35.0% | |
| TTTCTTTCCTAATGCAGATG+TGG | - | chr1_1:41594185-41594204 | Msa0022260:intron | 35.0% | |
| AAGGCTGAATATGATGAATC+AGG | - | chr1_1:41594214-41594233 | Msa0022260:intron | 35.0% | |
| CATTTCCTGTGAACAATTGA+AGG | + | chr1_1:41594241-41594260 | None:intergenic | 35.0% | |
| ! | AGATCCTCAACCAGTTTTTA+TGG | + | chr1_1:41594301-41594320 | None:intergenic | 35.0% |
| GCTATGTATTGTGACTGATT+TGG | - | chr1_1:41594455-41594474 | Msa0022260:five_prime_UTR | 35.0% | |
| ! | GATGAGATAGTGGTATGTAT+TGG | - | chr1_1:41594488-41594507 | Msa0022260:five_prime_UTR | 35.0% |
| GAACTGGAATGGTTAAGGTA+TGG | - | chr1_1:41591351-41591370 | Msa0022260:intron | 40.0% | |
| GGACAAAAGGATGCATATGT+TGG | - | chr1_1:41592028-41592047 | Msa0022260:CDS | 40.0% | |
| ! | CTAAAGTACCCAATTGAGCA+TGG | - | chr1_1:41592085-41592104 | Msa0022260:CDS | 40.0% |
| GGGATGATATGGAAAAGATC+TGG | - | chr1_1:41592122-41592141 | Msa0022260:intron | 40.0% | |
| AGAAGAACTGGATGTTCTTC+AGG | + | chr1_1:41592181-41592200 | None:intergenic | 40.0% | |
| ! | TGAAGCACCACTTAATCCAA+AGG | - | chr1_1:41592204-41592223 | Msa0022260:intron | 40.0% |
| !! | CGATTAGCCTTTGGATTAAG+TGG | + | chr1_1:41592214-41592233 | None:intergenic | 40.0% |
| !! | ATACATAGCTGGAGCATTGA+AGG | + | chr1_1:41592266-41592285 | None:intergenic | 40.0% |
| TGAATGGCAACATACATAGC+TGG | + | chr1_1:41592277-41592296 | None:intergenic | 40.0% | |
| AGCTATGTATGTTGCCATTC+AGG | - | chr1_1:41592276-41592295 | Msa0022260:intron | 40.0% | |
| ACTAGCATAAAGCGAAAGCA+CGG | + | chr1_1:41592302-41592321 | None:intergenic | 40.0% | |
| ATTCAAGACCCTGGATCATT+AGG | - | chr1_1:41592399-41592418 | Msa0022260:intron | 40.0% | |
| TTCAAGACCCTGGATCATTA+GGG | - | chr1_1:41592400-41592419 | Msa0022260:intron | 40.0% | |
| AGGAATGCAGTGAAGTGAAA+TGG | - | chr1_1:41592668-41592687 | Msa0022260:intron | 40.0% | |
| GGAATGCAGTGAAGTGAAAT+GGG | - | chr1_1:41592669-41592688 | Msa0022260:intron | 40.0% | |
| CGCTATGACAATGTCATATG+TGG | + | chr1_1:41592742-41592761 | None:intergenic | 40.0% | |
| TGTCAGACACTAACACATGT+CGG | - | chr1_1:41592832-41592851 | Msa0022260:intron | 40.0% | |
| GTACAGACACATCAGATCAA+TGG | + | chr1_1:41592870-41592889 | None:intergenic | 40.0% | |
| CATCCTGCAATATGTGGTTA+TGG | - | chr1_1:41592924-41592943 | Msa0022260:intron | 40.0% | |
| CATCCATAACCACATATTGC+AGG | + | chr1_1:41592930-41592949 | None:intergenic | 40.0% | |
| CTTCATAGATAGGAACTGTG+TGG | + | chr1_1:41593180-41593199 | None:intergenic | 40.0% | |
| CACACAGTTCCTATCTATGA+AGG | - | chr1_1:41593178-41593197 | Msa0022260:CDS | 40.0% | |
| AGGGCATATCCTTCATAGAT+AGG | + | chr1_1:41593190-41593209 | None:intergenic | 40.0% | |
| ! | GCTCGGTTAAGATTTTCATG+AGG | + | chr1_1:41593264-41593283 | None:intergenic | 40.0% |
| ATGAAAATCTTAACCGAGCG+TGG | - | chr1_1:41593265-41593284 | Msa0022260:CDS | 40.0% | |
| AAGAGCTATGAGTTACCTGA+TGG | - | chr1_1:41593409-41593428 | Msa0022260:intron | 40.0% | |
| ! | AGGAAGTATAGTGTCTGGAT+TGG | - | chr1_1:41593700-41593719 | Msa0022260:intron | 40.0% |
| ! | AAGTATAGTGTCTGGATTGG+AGG | - | chr1_1:41593703-41593722 | Msa0022260:intron | 40.0% |
| AAGTCATGCACTATACCTGT+TGG | + | chr1_1:41593756-41593775 | None:intergenic | 40.0% | |
| GGGTATTTCAAACACATGTC+TGG | + | chr1_1:41594130-41594149 | None:intergenic | 40.0% | |
| TTGCAATCCACATCTGCATT+AGG | + | chr1_1:41594195-41594214 | None:intergenic | 40.0% | |
| ! | AATGCAGATGTGGATTGCAA+AGG | - | chr1_1:41594195-41594214 | Msa0022260:intron | 40.0% |
| GTTCACAGGAAATGCTTCTA+AGG | - | chr1_1:41594247-41594266 | Msa0022260:intron | 40.0% | |
| GAACATGTCTTGTGTGGTTG+AGG | + | chr1_1:41590836-41590855 | None:intergenic | 45.0% | |
| ATACTATGATGTCGCTGTCG+CGG | + | chr1_1:41591484-41591503 | None:intergenic | 45.0% | |
| ATCACAAGTGACCGCAATTC+TGG | - | chr1_1:41591522-41591541 | Msa0022260:CDS | 45.0% | |
| ! | AAGTCTTATCCCACCAAGTG+AGG | + | chr1_1:41591715-41591734 | None:intergenic | 45.0% |
| TAATTGCAGGCTGGATTTGC+CGG | - | chr1_1:41591932-41591951 | Msa0022260:CDS | 45.0% | |
| GTGGACGACCTACAATACTA+GGG | + | chr1_1:41591982-41592001 | None:intergenic | 45.0% | |
| ! | ACTGGTGTGATGGTTGGTAT+GGG | - | chr1_1:41592007-41592026 | Msa0022260:CDS | 45.0% |
| ! | GATGGTTGGTATGGGACAAA+AGG | - | chr1_1:41592015-41592034 | Msa0022260:CDS | 45.0% |
| GTGCTTTCGCTTTATGCTAG+TGG | - | chr1_1:41592301-41592320 | Msa0022260:intron | 45.0% | |
| AGTTCGACCCTAATGATCCA+GGG | + | chr1_1:41592410-41592429 | None:intergenic | 45.0% | |
| TAGTTCGACCCTAATGATCC+AGG | + | chr1_1:41592411-41592430 | None:intergenic | 45.0% | |
| TGAAATCGTGAGAGACGTGA+AGG | - | chr1_1:41593315-41593334 | Msa0022260:intron | 45.0% | |
| AGAAACCTCAAAGACGAGCT+CGG | - | chr1_1:41593378-41593397 | Msa0022260:intron | 45.0% | |
| ! | CTATGAGTTACCTGATGGAC+AGG | - | chr1_1:41593414-41593433 | Msa0022260:intron | 45.0% |
| ATTGTGATCACCTGTCCATC+AGG | + | chr1_1:41593427-41593446 | None:intergenic | 45.0% | |
| GATGGACAGGTGATCACAAT+AGG | - | chr1_1:41593427-41593446 | Msa0022260:intron | 45.0% | |
| TTCAGGACAACGGAAACGTT+CGG | + | chr1_1:41593455-41593474 | None:intergenic | 45.0% | |
| !! | GGAAGAGTACTTCAGGACAA+CGG | + | chr1_1:41593465-41593484 | None:intergenic | 45.0% |
| GCTTCCATACCAATCATGGA+TGG | + | chr1_1:41593490-41593509 | None:intergenic | 45.0% | |
| AGGAGCTTCCATACCAATCA+TGG | + | chr1_1:41593494-41593513 | None:intergenic | 45.0% | |
| ATGATTGGTATGGAAGCTCC+TGG | - | chr1_1:41593493-41593512 | Msa0022260:intron | 45.0% | |
| GGAAACATCGTATTGAGTGG+TGG | - | chr1_1:41593580-41593599 | Msa0022260:intron | 45.0% | |
| CATTGCTGATAGGATGAGCA+AGG | - | chr1_1:41593621-41593640 | Msa0022260:intron | 45.0% | |
| ACACTATACTTCCTCTCTGG+TGG | + | chr1_1:41593694-41593713 | None:intergenic | 45.0% | |
| CAGACACTATACTTCCTCTC+TGG | + | chr1_1:41593697-41593716 | None:intergenic | 45.0% | |
| ! | CAGAGAGGAAGTATAGTGTC+TGG | - | chr1_1:41593695-41593714 | Msa0022260:intron | 45.0% |
| CATGCACTATACCTGTTGGA+AGG | + | chr1_1:41593752-41593771 | None:intergenic | 45.0% | |
| !!! | GTTAATTTTTTTTTTTTTTT+TGG | + | chr1_1:41590949-41590968 | None:intergenic | 5.0% |
| !! | TTATGATAATAATATAAATT+TGG | - | chr1_1:41591259-41591278 | Msa0022260:intron | 5.0% |
| !!! | TTTATTTCTTAAATTATTAT+CGG | + | chr1_1:41592774-41592793 | None:intergenic | 5.0% |
| AGCTGATGCAGCCAGAATTG+CGG | + | chr1_1:41591536-41591555 | None:intergenic | 50.0% | |
| AATTGCGATCCTTGCGAGTC+TGG | - | chr1_1:41591815-41591834 | Msa0022260:CDS | 50.0% | |
| ATTGCGATCCTTGCGAGTCT+GGG | - | chr1_1:41591816-41591835 | Msa0022260:CDS | 50.0% | |
| GAGTCTGGGGAATTGGAACA+CGG | - | chr1_1:41591830-41591849 | Msa0022260:CDS | 50.0% | |
| GCGGTGTTCCCTAGTATTGT+AGG | - | chr1_1:41591971-41591990 | Msa0022260:CDS | 50.0% | |
| CGTGGACGACCTACAATACT+AGG | + | chr1_1:41591983-41592002 | None:intergenic | 50.0% | |
| TACCAACCATCACACCAGTG+TGG | + | chr1_1:41592006-41592025 | None:intergenic | 50.0% | |
| ! | CACTGGTGTGATGGTTGGTA+TGG | - | chr1_1:41592006-41592025 | Msa0022260:CDS | 50.0% |
| GGTGCTTCAGTGAGAAGAAC+TGG | + | chr1_1:41592193-41592212 | None:intergenic | 50.0% | |
| TATGCTAGTGGCCGTACAAC+CGG | - | chr1_1:41592313-41592332 | Msa0022260:intron | 50.0% | |
| AAGTGGCGTATTCAAGACCC+TGG | - | chr1_1:41592390-41592409 | Msa0022260:intron | 50.0% | |
| ATCCTGCGTTTGGATCTTGC+AGG | - | chr1_1:41593220-41593239 | Msa0022260:CDS | 50.0% | |
| !! | GGTGAAAGAGTATCCACGCT+CGG | + | chr1_1:41593281-41593300 | None:intergenic | 50.0% |
| GTCTCTCACGATTTCACGCT+CGG | + | chr1_1:41593311-41593330 | None:intergenic | 50.0% | |
| !! | GATGGCTGGAAGAGTACTTC+AGG | + | chr1_1:41593472-41593491 | None:intergenic | 50.0% |
| CTCTTCCAGCCATCCATGAT+TGG | - | chr1_1:41593478-41593497 | Msa0022260:intron | 50.0% | |
| CCATACCAATCATGGATGGC+TGG | + | chr1_1:41593486-41593505 | None:intergenic | 50.0% | |
| CCAGCCATCCATGATTGGTA+TGG | - | chr1_1:41593483-41593502 | Msa0022260:intron | 50.0% | |
| TCATCCTATCAGCAATGCCG+GGG | + | chr1_1:41593618-41593637 | None:intergenic | 50.0% | |
| CTCATCCTATCAGCAATGCC+GGG | + | chr1_1:41593619-41593638 | None:intergenic | 50.0% | |
| GCTCATCCTATCAGCAATGC+CGG | + | chr1_1:41593620-41593639 | None:intergenic | 50.0% | |
| GAGCAAGGAGATCACAGCAT+TGG | - | chr1_1:41593636-41593655 | Msa0022260:intron | 50.0% | |
| !! | CTGGATTGGAGGCTCCATTT+TGG | - | chr1_1:41593714-41593733 | Msa0022260:intron | 50.0% |
| !! | TACCTGTTGGAAGGTGCTGA+GGG | + | chr1_1:41593743-41593762 | None:intergenic | 50.0% |
| !! | ATACCTGTTGGAAGGTGCTG+AGG | + | chr1_1:41593744-41593763 | None:intergenic | 50.0% |
| CAGGCCCTTCAATTGTTCAC+AGG | - | chr1_1:41594233-41594252 | Msa0022260:intron | 50.0% | |
| ! | TGAGGTACCCGCGTTGTTGT+TGG | + | chr1_1:41590818-41590837 | None:intergenic | 55.0% |
| GCTGCATTTGACTGCGAGTC+TGG | - | chr1_1:41591553-41591572 | Msa0022260:CDS | 55.0% | |
| TTGCGATCCTTGCGAGTCTG+GGG | - | chr1_1:41591817-41591836 | Msa0022260:CDS | 55.0% | |
| TCCTTGCGAGTCTGGGGAAT+TGG | - | chr1_1:41591823-41591842 | Msa0022260:CDS | 55.0% | |
| TCCAATTCCCCAGACTCGCA+AGG | + | chr1_1:41591827-41591846 | None:intergenic | 55.0% | |
| TTGCCGGAGATGATGCACCA+AGG | - | chr1_1:41591948-41591967 | Msa0022260:CDS | 55.0% | |
| TGCCGGAGATGATGCACCAA+GGG | - | chr1_1:41591949-41591968 | Msa0022260:CDS | 55.0% | |
| ATACTAGGGAACACCGCCCT+TGG | + | chr1_1:41591968-41591987 | None:intergenic | 55.0% | |
| ! | AAGCGAAAGCACGGCCTGAA+TGG | + | chr1_1:41592293-41592312 | None:intergenic | 55.0% |
| ACGCAGGATTGCGTGTGGAA+GGG | + | chr1_1:41593209-41593228 | None:intergenic | 55.0% | |
| AACGCAGGATTGCGTGTGGA+AGG | + | chr1_1:41593210-41593229 | None:intergenic | 55.0% | |
| TCCACACGCAATCCTGCGTT+TGG | - | chr1_1:41593210-41593229 | Msa0022260:CDS | 55.0% | |
| TCCAAACGCAGGATTGCGTG+TGG | + | chr1_1:41593214-41593233 | None:intergenic | 55.0% | |
| GACCTGCAAGATCCAAACGC+AGG | + | chr1_1:41593225-41593244 | None:intergenic | 55.0% | |
| GATTTCACGCTCGGCTGTTG+TGG | + | chr1_1:41593302-41593321 | None:intergenic | 55.0% | |
| AACAGCCGAGCTCGTCTTTG+AGG | + | chr1_1:41593386-41593405 | None:intergenic | 55.0% | |
| GGTGGTACGACTATGTTCCC+CGG | - | chr1_1:41593598-41593617 | Msa0022260:intron | 55.0% | |
| TGTTCCCCGGCATTGCTGAT+AGG | - | chr1_1:41593611-41593630 | Msa0022260:intron | 55.0% | |
| ! | GGTGCTGAGGGAAGCCAAAA+TGG | + | chr1_1:41593731-41593750 | None:intergenic | 55.0% |
| TTCCCTCAGCACCTTCCAAC+AGG | - | chr1_1:41593738-41593757 | Msa0022260:intron | 55.0% | |
| TCGTGGCAGCAGTCATGTCG+CGG | + | chr1_1:41591583-41591602 | None:intergenic | 60.0% | |
| ! | CGCCCTTGGTGCATCATCTC+CGG | + | chr1_1:41591954-41591973 | None:intergenic | 60.0% |
| CGGAGATGATGCACCAAGGG+CGG | - | chr1_1:41591952-41591971 | Msa0022260:CDS | 60.0% | |
| TCCACGCCACACTGGTGTGA+TGG | - | chr1_1:41591997-41592016 | Msa0022260:CDS | 60.0% | |
| ACCATCACACCAGTGTGGCG+TGG | + | chr1_1:41592001-41592020 | None:intergenic | 60.0% | |
| CGCCACACTGGTGTGATGGT+TGG | - | chr1_1:41592001-41592020 | Msa0022260:CDS | 60.0% | |
| AGGTGGTTGCACCACCAGAG+AGG | - | chr1_1:41593680-41593699 | Msa0022260:intron | 60.0% | |
| GTAGGTCGTCCACGCCACAC+TGG | - | chr1_1:41591989-41592008 | Msa0022260:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 41590721 | 41594549 | 41590721 | ID=Msa0022260;Name=Msa0022260 |
| chr1_1 | mRNA | 41590721 | 41594549 | 41590721 | ID=Msa0022260-mRNA-1;Parent=Msa0022260;Name=Msa0022260-mRNA-1;_AED=0.02;_eAED=0.02;_QI=233|1|1|1|0.75|0.6|5|282|377 |
| chr1_1 | exon | 41590721 | 41591068 | 41590721 | ID=Msa0022260-mRNA-1:exon:12305;Parent=Msa0022260-mRNA-1 |
| chr1_1 | exon | 41591511 | 41592124 | 41591511 | ID=Msa0022260-mRNA-1:exon:12304;Parent=Msa0022260-mRNA-1 |
| chr1_1 | exon | 41592936 | 41593329 | 41592936 | ID=Msa0022260-mRNA-1:exon:12303;Parent=Msa0022260-mRNA-1 |
| chr1_1 | exon | 41593903 | 41593975 | 41593903 | ID=Msa0022260-mRNA-1:exon:12302;Parent=Msa0022260-mRNA-1 |
| chr1_1 | exon | 41594330 | 41594549 | 41594330 | ID=Msa0022260-mRNA-1:exon:12301;Parent=Msa0022260-mRNA-1 |
| chr1_1 | five_prime_UTR | 41594330 | 41594549 | 41594330 | ID=Msa0022260-mRNA-1:five_prime_utr;Parent=Msa0022260-mRNA-1 |
| chr1_1 | five_prime_UTR | 41593963 | 41593975 | 41593963 | ID=Msa0022260-mRNA-1:five_prime_utr;Parent=Msa0022260-mRNA-1 |
| chr1_1 | CDS | 41593903 | 41593962 | 41593903 | ID=Msa0022260-mRNA-1:cds;Parent=Msa0022260-mRNA-1 |
| chr1_1 | CDS | 41592936 | 41593329 | 41592936 | ID=Msa0022260-mRNA-1:cds;Parent=Msa0022260-mRNA-1 |
| chr1_1 | CDS | 41591511 | 41592124 | 41591511 | ID=Msa0022260-mRNA-1:cds;Parent=Msa0022260-mRNA-1 |
| chr1_1 | CDS | 41591003 | 41591068 | 41591003 | ID=Msa0022260-mRNA-1:cds;Parent=Msa0022260-mRNA-1 |
| chr1_1 | three_prime_UTR | 41590721 | 41591002 | 41590721 | ID=Msa0022260-mRNA-1:three_prime_utr;Parent=Msa0022260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
