AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0419720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419720 MtrunA17_Chr3g0118301 96.970 165 5 0 1 165 1 165 2.05e-117 328
Msa0419720 MtrunA17_Chr1g0192701 83.893 149 9 1 17 165 1 134 7.02e-80 233
Msa0419720 MtrunA17_Chr2g0312071 75.000 56 8 1 110 165 35 84 1.04e-21 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419720 AT1G34350.1 71.166 163 47 0 3 165 1 163 2.15e-82 240
Msa0419720 AT1G34350.2 61.170 188 48 1 3 165 1 188 3.39e-76 226

Find 43 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAGACTTAATAGTATTC+TGG 0.230596 3_2:+67863903 Msa0419720:CDS
TTCACTTTCTTTGCATTCTC+TGG 0.282129 3_2:-67861820 None:intergenic
CTGAAAGTTGGTATTCTTCC+TGG 0.303474 3_2:-67862840 None:intergenic
GTTTCAGGAACCTTGGCTAC+TGG 0.315298 3_2:+67862772 Msa0419720:intron
GTGCTGAAGTAGTCAATTTC+CGG 0.316899 3_2:+67861843 Msa0419720:five_prime_UTR
GTAATTAAAGAAACTTTGTT+TGG 0.355871 3_2:-67864408 None:intergenic
GAGTATTTATGTCAGTTCTT+TGG 0.365618 3_2:+67863974 Msa0419720:CDS
GACTTAAGTAAGTGTTCTAA+TGG 0.380430 3_2:+67864519 Msa0419720:three_prime_UTR
TTTATGTCAGTTCTTTGGTC+TGG 0.387486 3_2:+67863979 Msa0419720:CDS
GTTTCTTTCATGCTATTGAT+TGG 0.393651 3_2:+67862007 Msa0419720:CDS
TGCATTCGCTATGATAATCT+TGG 0.397468 3_2:+67864011 Msa0419720:CDS
TTTCAGGAACCTTGGCTACT+GGG 0.415351 3_2:+67862773 Msa0419720:intron
TATGTTACTTGATTGTTAAG+TGG 0.415739 3_2:+67864174 Msa0419720:CDS
CTGATGCATGGGAAAATTCT+TGG 0.423972 3_2:-67864430 None:intergenic
GAGAGACTTAATAGTATTCT+GGG 0.439923 3_2:+67863904 Msa0419720:CDS
TAATTAAAGAAACTTTGTTT+GGG 0.447933 3_2:-67864407 None:intergenic
AAAGAAGAATCTGGAATTGA+AGG 0.454636 3_2:+67861780 None:intergenic
CTTTCATGCTATTGATTGGA+AGG 0.458422 3_2:+67862011 Msa0419720:CDS
AGAAAGACAACTCATTTGTA+TGG 0.466408 3_2:-67864376 None:intergenic
GCGTTGCGATCTGCAGTTAC+CGG 0.480536 3_2:-67861862 None:intergenic
AATGCTACGTACACGTCAAA+AGG 0.482328 3_2:-67862874 None:intergenic
AGGAATAGTTGATCTATAGT+TGG 0.488648 3_2:+67864243 Msa0419720:exon
CTTAACAATCAAGTAACATA+AGG 0.491135 3_2:-67864171 None:intergenic
TTCTTGCGATTATTGTCTCC+AGG 0.499806 3_2:+67862822 Msa0419720:CDS
GAACAAGCACATCTGAAAGT+TGG 0.517575 3_2:-67862852 None:intergenic
TTAAAGAAACTTTGTTTGGG+AGG 0.520741 3_2:-67864404 None:intergenic
CGATGAACTGAAATCTGCTA+TGG 0.524498 3_2:+67861894 Msa0419720:CDS
AACAGAATGAACTGATGCAT+GGG 0.546519 3_2:-67864441 None:intergenic
AAGGGCTGCTCGTAGTAAGC+AGG 0.566315 3_2:+67864223 Msa0419720:CDS
AAACAGAATGAACTGATGCA+TGG 0.574496 3_2:-67864442 None:intergenic
CTGAACTAAGACATCGTGCA+AGG 0.578215 3_2:+67864204 Msa0419720:CDS
GTTAACAATCCCAGTAGCCA+AGG 0.583367 3_2:-67862782 None:intergenic
ATCATAGCGAATGCAAGAAG+AGG 0.591910 3_2:-67864003 None:intergenic
TTAAGTAAGTGTTCTAATGG+TGG 0.594935 3_2:+67864522 Msa0419720:three_prime_UTR
ACTGACATAAATACTCCACT+TGG 0.602088 3_2:-67863967 None:intergenic
TCGCAAGAAGCAATAGAACA+TGG 0.614827 3_2:-67862808 None:intergenic
TGAACTGAAATCTGCTATGG+AGG 0.630102 3_2:+67861897 Msa0419720:CDS
AGAGACTTAATAGTATTCTG+GGG 0.632890 3_2:+67863905 Msa0419720:CDS
TGAACTAAGACATCGTGCAA+GGG 0.640138 3_2:+67864205 Msa0419720:CDS
TTTCAGTTCATCGATCGACA+TGG 0.652553 3_2:-67861884 None:intergenic
CTAAGGAGTTCGTGTCCATG+AGG 0.669396 3_2:+67864307 Msa0419720:three_prime_UTR
GAGACTTAATAGTATTCTGG+GGG 0.682914 3_2:+67863906 Msa0419720:CDS
AATGAGTTGTTGTAATCACG+TGG 0.714324 3_2:+67864353 Msa0419720:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAATTATCTATTTATTT+TGG + chr3_2:67862148-67862167 Msa0419720:intron 10.0%
!!! TTTGATATAATATGATTTTA+TGG + chr3_2:67862619-67862638 Msa0419720:intron 10.0%
!!! AAATTTCTAAAATGAGAAAA+TGG - chr3_2:67862689-67862708 None:intergenic 15.0%
!!! TTTTTTTTTGTTTTTGTTTC+AGG + chr3_2:67862757-67862776 Msa0419720:intron 15.0%
!! ACATTCCATAAAATTAAAAA+AGG - chr3_2:67862900-67862919 None:intergenic 15.0%
!!! TGTTTTTGAATAAACTATAA+AGG + chr3_2:67862920-67862939 Msa0419720:intron 15.0%
!!! TAAATATTTCTTTTAGAATG+AGG + chr3_2:67863346-67863365 Msa0419720:intron 15.0%
!! TAAGATATAATTGAATTGAT+AGG + chr3_2:67863637-67863656 Msa0419720:intron 15.0%
!! AAGATATAATTGAATTGATA+GGG + chr3_2:67863638-67863657 Msa0419720:intron 15.0%
!! TCATATTGAATATTAACTAT+CGG + chr3_2:67864081-67864100 Msa0419720:intron 15.0%
!!! TAATTAAAGAAACTTTGTTT+GGG - chr3_2:67864410-67864429 None:intergenic 15.0%
!! AAAAATAAGTAAATCCAAAC+AGG - chr3_2:67862338-67862357 None:intergenic 20.0%
!!! TTTATGGATCATATTACTTT+TGG + chr3_2:67862635-67862654 Msa0419720:intron 20.0%
!!! GCATTCCTTTTTTAATTTTA+TGG + chr3_2:67862892-67862911 Msa0419720:intron 20.0%
!! ATTATGTAGTCTATTCAATT+TGG + chr3_2:67863101-67863120 Msa0419720:intron 20.0%
!!! TATTCAATTTGGTAACATTA+TGG + chr3_2:67863112-67863131 Msa0419720:intron 20.0%
!!! TTCACTCTTTTGAAAATTTT+GGG - chr3_2:67863284-67863303 None:intergenic 20.0%
!!! ATTCACTCTTTTGAAAATTT+TGG - chr3_2:67863285-67863304 None:intergenic 20.0%
!!! TTTTCAAAAGAGTGAATATA+TGG + chr3_2:67863288-67863307 Msa0419720:intron 20.0%
!! GTAATTAAAGAAACTTTGTT+TGG - chr3_2:67864411-67864430 None:intergenic 20.0%
! CGAAGCAAAAAAAAAGAATA+AGG - chr3_2:67862098-67862117 None:intergenic 25.0%
!!! TTTTTTTGCTTCGTCAATTA+TGG + chr3_2:67862105-67862124 Msa0419720:intron 25.0%
! TTATGGAGTTTAATTGAATG+TGG + chr3_2:67862122-67862141 Msa0419720:intron 25.0%
!!! TTGTATAAGTTGTTTTGCAT+AGG + chr3_2:67862428-67862447 Msa0419720:intron 25.0%
! AGAAAGTTAAGCTACATTAT+TGG - chr3_2:67863847-67863866 None:intergenic 25.0%
! ATAATGTAGCTTAACTTTCT+TGG + chr3_2:67863847-67863866 Msa0419720:intron 25.0%
! CTTAACAATCAAGTAACATA+AGG - chr3_2:67864174-67864193 None:intergenic 25.0%
!! TATGTTACTTGATTGTTAAG+TGG + chr3_2:67864174-67864193 Msa0419720:CDS 25.0%
!!! GATTTTGATGGATTAAACTA+AGG + chr3_2:67864290-67864309 Msa0419720:three_prime_UTR 25.0%
! ATTACAACAACTCATTTGTA+TGG - chr3_2:67864349-67864368 None:intergenic 25.0%
CCTAAAAAGTTATCTTTAGC+AGG - chr3_2:67861988-67862007 None:intergenic 30.0%
! CCTGCTAAAGATAACTTTTT+AGG + chr3_2:67861985-67862004 Msa0419720:CDS 30.0%
GTTTCTTTCATGCTATTGAT+TGG + chr3_2:67862007-67862026 Msa0419720:CDS 30.0%
! TGTCATGTTTTGTACTTGTT+TGG + chr3_2:67862215-67862234 Msa0419720:intron 30.0%
! ATGCGAGTTGTATATTGATT+CGG + chr3_2:67862293-67862312 Msa0419720:intron 30.0%
TTCGGTACTAAATTGAACTT+AGG + chr3_2:67862311-67862330 Msa0419720:intron 30.0%
TCGGTACTAAATTGAACTTA+GGG + chr3_2:67862312-67862331 Msa0419720:intron 30.0%
ACAAATAAATAAGCTTGTCG+AGG - chr3_2:67862412-67862431 None:intergenic 30.0%
! AACCATTGAGTTGTCAAATA+GGG + chr3_2:67862569-67862588 Msa0419720:intron 30.0%
GACAATATTAGTAAGTTTGC+AGG - chr3_2:67862726-67862745 None:intergenic 30.0%
!! GTGATAAGTTGATTATCATG+GGG - chr3_2:67863011-67863030 None:intergenic 30.0%
!! GGTGATAAGTTGATTATCAT+GGG - chr3_2:67863012-67863031 None:intergenic 30.0%
AATGCAGAAAATTAAAGGCA+GGG - chr3_2:67863033-67863052 None:intergenic 30.0%
!! TGCCTTTAATTTTCTGCATT+GGG + chr3_2:67863033-67863052 Msa0419720:intron 30.0%
TTGCTGTAATCTATTCTGTT+TGG + chr3_2:67863191-67863210 Msa0419720:intron 30.0%
TCAAAGCATGATAGGATAAA+TGG - chr3_2:67863240-67863259 None:intergenic 30.0%
TTTATCCTATCATGCTTTGA+TGG + chr3_2:67863240-67863259 Msa0419720:intron 30.0%
CTAGTTCAATAGCTATTTAG+AGG + chr3_2:67863425-67863444 Msa0419720:intron 30.0%
AGTTGAAGTTTGAATACCTA+TGG + chr3_2:67863500-67863519 Msa0419720:intron 30.0%
TGTCTATCTGATACAAGTTT+AGG - chr3_2:67863573-67863592 None:intergenic 30.0%
GATGTAAGCACTAAAAACAT+GGG - chr3_2:67863615-67863634 None:intergenic 30.0%
AGATGTAAGCACTAAAAACA+TGG - chr3_2:67863616-67863635 None:intergenic 30.0%
ATTGAATTGATAGGGAAGAA+TGG + chr3_2:67863646-67863665 Msa0419720:intron 30.0%
! TCATTTTCCATGCACATATT+TGG + chr3_2:67863752-67863771 Msa0419720:intron 30.0%
GAAAACATAAAACTGACATC+AGG - chr3_2:67863795-67863814 None:intergenic 30.0%
TGAGAGACTTAATAGTATTC+TGG + chr3_2:67863903-67863922 Msa0419720:CDS 30.0%
GAGAGACTTAATAGTATTCT+GGG + chr3_2:67863904-67863923 Msa0419720:CDS 30.0%
AGAGACTTAATAGTATTCTG+GGG + chr3_2:67863905-67863924 Msa0419720:CDS 30.0%
!!! CAAAACTATTTTGATCCAAG+TGG + chr3_2:67863952-67863971 Msa0419720:CDS 30.0%
GAGTATTTATGTCAGTTCTT+TGG + chr3_2:67863974-67863993 Msa0419720:CDS 30.0%
AGGAATAGTTGATCTATAGT+TGG + chr3_2:67864243-67864262 Msa0419720:exon 30.0%
! TGAATGTAGTCAGATTTTGA+TGG + chr3_2:67864278-67864297 Msa0419720:three_prime_UTR 30.0%
AGAAAGACAACTCATTTGTA+TGG - chr3_2:67864379-67864398 None:intergenic 30.0%
! TTAAAGAAACTTTGTTTGGG+AGG - chr3_2:67864407-67864426 None:intergenic 30.0%
GACTTAAGTAAGTGTTCTAA+TGG + chr3_2:67864519-67864538 Msa0419720:three_prime_UTR 30.0%
TTAAGTAAGTGTTCTAATGG+TGG + chr3_2:67864522-67864541 Msa0419720:three_prime_UTR 30.0%
TTCACTTTCTTTGCATTCTC+TGG - chr3_2:67861823-67861842 None:intergenic 35.0%
! CTTTCATGCTATTGATTGGA+AGG + chr3_2:67862011-67862030 Msa0419720:CDS 35.0%
ATGCTAAAAGAGAAGGTTTG+CGG - chr3_2:67862063-67862082 None:intergenic 35.0%
GAGAGAAATGCTAAAAGAGA+AGG - chr3_2:67862070-67862089 None:intergenic 35.0%
! CTGGTTGGTACAAAAGTTTA+GGG - chr3_2:67862547-67862566 None:intergenic 35.0%
! CAACCATTGAGTTGTCAAAT+AGG + chr3_2:67862568-67862587 Msa0419720:intron 35.0%
! ACCATTGAGTTGTCAAATAG+GGG + chr3_2:67862570-67862589 Msa0419720:intron 35.0%
!! TGTTTTTGTTTCAGGAACCT+TGG + chr3_2:67862765-67862784 Msa0419720:intron 35.0%
!! TAAGTTGATTATCATGGGGA+AGG - chr3_2:67863007-67863026 None:intergenic 35.0%
!! GGGTGATAAGTTGATTATCA+TGG - chr3_2:67863013-67863032 None:intergenic 35.0%
CAATGCAGAAAATTAAAGGC+AGG - chr3_2:67863034-67863053 None:intergenic 35.0%
!! CTGCCTTTAATTTTCTGCAT+TGG + chr3_2:67863032-67863051 Msa0419720:intron 35.0%
CACCCAATGCAGAAAATTAA+AGG - chr3_2:67863038-67863057 None:intergenic 35.0%
CAATCTTTATCCCACTAAGT+GGG - chr3_2:67863161-67863180 None:intergenic 35.0%
TCAATCTTTATCCCACTAAG+TGG - chr3_2:67863162-67863181 None:intergenic 35.0%
TATTATCTTAGCCACTGATC+AGG + chr3_2:67863379-67863398 Msa0419720:intron 35.0%
AATAGCTATTTAGAGGAGAG+TGG + chr3_2:67863432-67863451 Msa0419720:intron 35.0%
! CAGGAAAGAATACAGTGTTT+TGG + chr3_2:67863470-67863489 Msa0419720:intron 35.0%
GTATATCTTCTCTACACCAT+AGG - chr3_2:67863519-67863538 None:intergenic 35.0%
AATTGATAGGGAAGAATGGA+TGG + chr3_2:67863650-67863669 Msa0419720:intron 35.0%
TGTGTGCATCTTATCTAAAC+CGG - chr3_2:67863706-67863725 None:intergenic 35.0%
GTAAACACCAAATATGTGCA+TGG - chr3_2:67863762-67863781 None:intergenic 35.0%
!! TCTTGGAAATTGTTTTGCAG+TGG + chr3_2:67863864-67863883 Msa0419720:intron 35.0%
GAGACTTAATAGTATTCTGG+GGG + chr3_2:67863906-67863925 Msa0419720:CDS 35.0%
ACTGACATAAATACTCCACT+TGG - chr3_2:67863970-67863989 None:intergenic 35.0%
TTTATGTCAGTTCTTTGGTC+TGG + chr3_2:67863979-67863998 Msa0419720:CDS 35.0%
TGCATTCGCTATGATAATCT+TGG + chr3_2:67864011-67864030 Msa0419720:CDS 35.0%
TTCGCTATGATAATCTTGGT+TGG + chr3_2:67864015-67864034 Msa0419720:intron 35.0%
CATAATGGTTGTGACATAAG+GGG - chr3_2:67864046-67864065 None:intergenic 35.0%
CCATAATGGTTGTGACATAA+GGG - chr3_2:67864047-67864066 None:intergenic 35.0%
ACCATAATGGTTGTGACATA+AGG - chr3_2:67864048-67864067 None:intergenic 35.0%
AATGAGTTGTTGTAATCACG+TGG + chr3_2:67864353-67864372 Msa0419720:intron 35.0%
AACAGAATGAACTGATGCAT+GGG - chr3_2:67864444-67864463 None:intergenic 35.0%
AAACAGAATGAACTGATGCA+TGG - chr3_2:67864445-67864464 None:intergenic 35.0%
TGTAACTCTTCCAAAAACGA+AGG + chr3_2:67864466-67864485 Msa0419720:three_prime_UTR 35.0%
! TACAAGTGATCCTTCGTTTT+TGG - chr3_2:67864479-67864498 None:intergenic 35.0%
GTGCTGAAGTAGTCAATTTC+CGG + chr3_2:67861843-67861862 Msa0419720:five_prime_UTR 40.0%
TTTCAGTTCATCGATCGACA+TGG - chr3_2:67861887-67861906 None:intergenic 40.0%
CGATGAACTGAAATCTGCTA+TGG + chr3_2:67861894-67861913 Msa0419720:CDS 40.0%
TGAACTGAAATCTGCTATGG+AGG + chr3_2:67861897-67861916 Msa0419720:CDS 40.0%
AATTGAACTTAGGGCCTGTT+TGG + chr3_2:67862321-67862340 Msa0419720:intron 40.0%
! GTATTAATCAGGGGCTTGTT+TGG - chr3_2:67862471-67862490 None:intergenic 40.0%
CGCGGATTTGTATTAATCAG+GGG - chr3_2:67862480-67862499 None:intergenic 40.0%
CCGCGGATTTGTATTAATCA+GGG - chr3_2:67862481-67862500 None:intergenic 40.0%
CCCTGATTAATACAAATCCG+CGG + chr3_2:67862478-67862497 Msa0419720:intron 40.0%
ACCGCGGATTTGTATTAATC+AGG - chr3_2:67862482-67862501 None:intergenic 40.0%
! CCTGGTTGGTACAAAAGTTT+AGG - chr3_2:67862548-67862567 None:intergenic 40.0%
! CCTAAACTTTTGTACCAACC+AGG + chr3_2:67862545-67862564 Msa0419720:intron 40.0%
AAACATAAACTCGCGCTTCA+GGG - chr3_2:67862596-67862615 None:intergenic 40.0%
TCGCAAGAAGCAATAGAACA+TGG - chr3_2:67862811-67862830 None:intergenic 40.0%
TTCTTGCGATTATTGTCTCC+AGG + chr3_2:67862822-67862841 Msa0419720:CDS 40.0%
!! CTGAAAGTTGGTATTCTTCC+TGG - chr3_2:67862843-67862862 None:intergenic 40.0%
GAACAAGCACATCTGAAAGT+TGG - chr3_2:67862855-67862874 None:intergenic 40.0%
AATGCTACGTACACGTCAAA+AGG - chr3_2:67862877-67862896 None:intergenic 40.0%
CTTCAAACAGAAGTGAAGTG+AGG - chr3_2:67862978-67862997 None:intergenic 40.0%
TGCAACCATCAAAGCATGAT+AGG - chr3_2:67863248-67863267 None:intergenic 40.0%
GTGGACAGGTTATAAATGAC+AGG + chr3_2:67863451-67863470 Msa0419720:intron 40.0%
TAAGACGCAAGAATGCACAA+TGG - chr3_2:67863548-67863567 None:intergenic 40.0%
AAGCACTAAAAACATGGGCA+TGG - chr3_2:67863610-67863629 None:intergenic 40.0%
! TAGGGAAGAATGGATGGTTT+TGG + chr3_2:67863656-67863675 Msa0419720:intron 40.0%
! AGGGAAGAATGGATGGTTTT+GGG + chr3_2:67863657-67863676 Msa0419720:intron 40.0%
!!! GAATGGATGGTTTTGGGTTT+TGG + chr3_2:67863663-67863682 Msa0419720:intron 40.0%
GTGTGCATCTTATCTAAACC+GGG - chr3_2:67863705-67863724 None:intergenic 40.0%
CAGACACAAGAATGCACAAT+GGG - chr3_2:67863731-67863750 None:intergenic 40.0%
ACAGACACAAGAATGCACAA+TGG - chr3_2:67863732-67863751 None:intergenic 40.0%
! ATAGTATTCTGGGGGAAAAC+TGG + chr3_2:67863914-67863933 Msa0419720:CDS 40.0%
ATCATAGCGAATGCAAGAAG+AGG - chr3_2:67864006-67864025 None:intergenic 40.0%
CCCTTATGTCACAACCATTA+TGG + chr3_2:67864044-67864063 Msa0419720:intron 40.0%
TGTCACAACCATTATGGTGA+CGG + chr3_2:67864050-67864069 Msa0419720:intron 40.0%
AAAGATGACCGTCACCATAA+TGG - chr3_2:67864061-67864080 None:intergenic 40.0%
TGAACTAAGACATCGTGCAA+GGG + chr3_2:67864205-67864224 Msa0419720:CDS 40.0%
CTGATGCATGGGAAAATTCT+TGG - chr3_2:67864433-67864452 None:intergenic 40.0%
GAAATTGGAGGGAGAAGAGT+AGG - chr3_2:67862039-67862058 None:intergenic 45.0%
! ATCCGCGGTGTGTATCTTTT+TGG + chr3_2:67862493-67862512 Msa0419720:intron 45.0%
GTCCAAAAAGATACACACCG+CGG - chr3_2:67862498-67862517 None:intergenic 45.0%
TTGACAACTCAATGGTTGCC+TGG - chr3_2:67862566-67862585 None:intergenic 45.0%
GCCCCTATTTGACAACTCAA+TGG - chr3_2:67862574-67862593 None:intergenic 45.0%
CAAACATAAACTCGCGCTTC+AGG - chr3_2:67862597-67862616 None:intergenic 45.0%
TTTCAGGAACCTTGGCTACT+GGG + chr3_2:67862773-67862792 Msa0419720:intron 45.0%
GTTAACAATCCCAGTAGCCA+AGG - chr3_2:67862785-67862804 None:intergenic 45.0%
GCATTGGGTGAAATACTGAG+CGG + chr3_2:67863048-67863067 Msa0419720:intron 45.0%
AGCGGCGATAACGTGATATT+TGG + chr3_2:67863066-67863085 Msa0419720:intron 45.0%
CTTTATCCCACTAAGTGGGT+CGG - chr3_2:67863157-67863176 None:intergenic 45.0%
TATCTCCATGACCTGATCAG+TGG - chr3_2:67863393-67863412 None:intergenic 45.0%
CTATTTAGAGGAGAGTGGAC+AGG + chr3_2:67863437-67863456 Msa0419720:intron 45.0%
!!! GATGGTTTTGGGTTTTGGAG+TGG + chr3_2:67863668-67863687 Msa0419720:intron 45.0%
!!! TGGGTTTTGGAGTGGAACTT+TGG + chr3_2:67863676-67863695 Msa0419720:intron 45.0%
!! GGAAATTGTTTTGCAGTGGC+TGG + chr3_2:67863868-67863887 Msa0419720:intron 45.0%
CTGAACTAAGACATCGTGCA+AGG + chr3_2:67864204-67864223 Msa0419720:CDS 45.0%
CACGTGATTACAACACCTCA+TGG - chr3_2:67864325-67864344 None:intergenic 45.0%
!! CATGAGGTGTTGTAATCACG+TGG + chr3_2:67864323-67864342 Msa0419720:intron 45.0%
AGGTTTGCGGCGAAATTGGA+GGG - chr3_2:67862050-67862069 None:intergenic 50.0%
AAGGTTTGCGGCGAAATTGG+AGG - chr3_2:67862051-67862070 None:intergenic 50.0%
GAGAAGGTTTGCGGCGAAAT+TGG - chr3_2:67862054-67862073 None:intergenic 50.0%
CAACTCAATGGTTGCCTGGT+TGG - chr3_2:67862562-67862581 None:intergenic 50.0%
GTTTCAGGAACCTTGGCTAC+TGG + chr3_2:67862772-67862791 Msa0419720:intron 50.0%
ATGTAGCCGACCCACTTAGT+GGG + chr3_2:67863148-67863167 Msa0419720:intron 50.0%
CTTAGCCACTGATCAGGTCA+TGG + chr3_2:67863385-67863404 Msa0419720:intron 50.0%
GGAGTGGAACTTTGGATACC+CGG + chr3_2:67863684-67863703 Msa0419720:intron 50.0%
CTAAGGAGTTCGTGTCCATG+AGG + chr3_2:67864307-67864326 Msa0419720:three_prime_UTR 50.0%
GCGTTGCGATCTGCAGTTAC+CGG - chr3_2:67861865-67861884 None:intergenic 55.0%
CACTAAGTGGGTCGGCTACA+TGG - chr3_2:67863149-67863168 None:intergenic 55.0%
CATGTAGCCGACCCACTTAG+TGG + chr3_2:67863147-67863166 Msa0419720:intron 55.0%
AAGGGCTGCTCGTAGTAAGC+AGG + chr3_2:67864223-67864242 Msa0419720:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 67861792 67864590 67861792 ID=Msa0419720;Name=Msa0419720
chr3_2 mRNA 67861792 67864590 67861792 ID=Msa0419720-mRNA-1;Parent=Msa0419720;Name=Msa0419720-mRNA-1;_AED=0.10;_eAED=0.10;_QI=94|1|1|1|0|0.2|5|310|165
chr3_2 exon 67861792 67862032 67861792 ID=Msa0419720-mRNA-1:exon:15868;Parent=Msa0419720-mRNA-1
chr3_2 exon 67862779 67862884 67862779 ID=Msa0419720-mRNA-1:exon:15869;Parent=Msa0419720-mRNA-1
chr3_2 exon 67863884 67864032 67863884 ID=Msa0419720-mRNA-1:exon:15870;Parent=Msa0419720-mRNA-1
chr3_2 exon 67864155 67864328 67864155 ID=Msa0419720-mRNA-1:exon:15871;Parent=Msa0419720-mRNA-1
chr3_2 exon 67864359 67864590 67864359 ID=Msa0419720-mRNA-1:exon:15872;Parent=Msa0419720-mRNA-1
chr3_2 five_prime_UTR 67861792 67861885 67861792 ID=Msa0419720-mRNA-1:five_prime_utr;Parent=Msa0419720-mRNA-1
chr3_2 CDS 67861886 67862032 67861886 ID=Msa0419720-mRNA-1:cds;Parent=Msa0419720-mRNA-1
chr3_2 CDS 67862779 67862884 67862779 ID=Msa0419720-mRNA-1:cds;Parent=Msa0419720-mRNA-1
chr3_2 CDS 67863884 67864032 67863884 ID=Msa0419720-mRNA-1:cds;Parent=Msa0419720-mRNA-1
chr3_2 CDS 67864155 67864250 67864155 ID=Msa0419720-mRNA-1:cds;Parent=Msa0419720-mRNA-1
chr3_2 three_prime_UTR 67864251 67864328 67864251 ID=Msa0419720-mRNA-1:three_prime_utr;Parent=Msa0419720-mRNA-1
chr3_2 three_prime_UTR 67864359 67864590 67864359 ID=Msa0419720-mRNA-1:three_prime_utr;Parent=Msa0419720-mRNA-1
Gene Sequence

>Msa0419720

ATGTCGATCGATGAACTGAAATCTGCTATGGAGGAACACGTTGATCTTATGTCAGATCTTGTTCAGAAAATCTCTTCTGAACTTCGTACTAATCTTCGTCCTGCTAAAGATAACTTTTTAGGTTTCTTTCATGCTATTGATTGGAAGGAACCTTGGCTACTGGGATTGTTAACATTCCATGTTCTATTGCTTCTTGCGATTATTGTCTCCAGGAAGAATACCAACTTTCAGATGTGCTTGTTCCTTTTGACGTTGGCTGGTGTATATCTTGCTGAGAGACTTAATAGTATTCTGGGGGAAAACTGGAAAAGCTTCTCTAGTCAAAACTATTTTGATCCAAGTGGAGTATTTATGTCAGTTCTTTGGTCTGGTCCTCTTCTTGCATTCGCTATGATAATCTTGATCAATACACTCTTTTCCTTATGTTACTTGATTGTTAAGTGGAAAAGAGCTGAACTAAGACATCGTGCAAGGGCTGCTCGTAGTAAGCAGGAATAG

Protein sequence

>Msa0419720

MSIDELKSAMEEHVDLMSDLVQKISSELRTNLRPAKDNFLGFFHAIDWKEPWLLGLLTFHVLLLLAIIVSRKNTNFQMCLFLLTLAGVYLAERLNSILGENWKSFSSQNYFDPSGVFMSVLWSGPLLAFAMIILINTLFSLCYLIVKWKRAELRHRARAARSKQE*