AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0511770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511770 MtrunA17_Chr3g0118301 96.970 165 5 0 1 165 1 165 2.05e-117 328
Msa0511770 MtrunA17_Chr1g0192701 83.893 149 9 1 17 165 1 134 7.02e-80 233
Msa0511770 MtrunA17_Chr2g0312071 75.000 56 8 1 110 165 35 84 1.04e-21 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511770 AT1G34350.1 71.166 163 47 0 3 165 1 163 2.15e-82 240
Msa0511770 AT1G34350.2 61.170 188 48 1 3 165 1 188 3.39e-76 226

Find 43 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGAGACTTAATAGTATTC+TGG 0.230596 3_4:+61410507 Msa0511770:CDS
TTCACTTTCTTTGCATTCTC+TGG 0.282129 3_4:-61408423 None:intergenic
CTGAAAGTTGGTATTCTTCC+TGG 0.303474 3_4:-61409444 None:intergenic
GTTTCAGGAACCTTGGCTAC+TGG 0.315298 3_4:+61409376 Msa0511770:intron
GTGCTGAAGTAGTCAATTTC+CGG 0.316899 3_4:+61408446 Msa0511770:five_prime_UTR
GTAATTAAAGAAACTTTGTT+TGG 0.355871 3_4:-61410982 None:intergenic
GAGTATTTATGTCAGTTCTT+TGG 0.365618 3_4:+61410578 Msa0511770:CDS
TTTATGTCAGTTCTTTGGTC+TGG 0.387486 3_4:+61410583 Msa0511770:CDS
GTTTCTTTCATGCTATTGAT+TGG 0.393651 3_4:+61408610 Msa0511770:CDS
TGCATTCGCTATGATAATCT+TGG 0.397468 3_4:+61410615 Msa0511770:CDS
TTTCAGGAACCTTGGCTACT+GGG 0.415351 3_4:+61409377 Msa0511770:intron
TATGTTACTTGATTGTTAAG+TGG 0.415739 3_4:+61410778 Msa0511770:CDS
CTGATGCATGGGAAAATTCT+TGG 0.423972 3_4:-61411004 None:intergenic
GAGAGACTTAATAGTATTCT+GGG 0.439923 3_4:+61410508 Msa0511770:CDS
TAATTAAAGAAACTTTGTTT+GGG 0.447933 3_4:-61410981 None:intergenic
AAAGAAGAATCTGGAATTGA+AGG 0.454636 3_4:+61408383 None:intergenic
CTTTCATGCTATTGATTGGA+AGG 0.458422 3_4:+61408614 Msa0511770:CDS
AGAAAGACAACTCATTTGTA+TGG 0.466408 3_4:-61410950 None:intergenic
GCGTTGCGATCTGCAGTTAC+CGG 0.480536 3_4:-61408465 None:intergenic
AATGCTACGTACACGTCAAA+AGG 0.482328 3_4:-61409478 None:intergenic
AGGAATAGTTGATCTATAGT+TGG 0.488648 3_4:+61410847 Msa0511770:exon
TTGTTAAGTAAGTGTTCTAA+TGG 0.489799 3_4:+61411096 Msa0511770:three_prime_UTR
CTTAACAATCAAGTAACATA+AGG 0.491135 3_4:-61410775 None:intergenic
TTCTTGCGATTATTGTCTCC+AGG 0.499806 3_4:+61409426 Msa0511770:CDS
GAACAAGCACATCTGAAAGT+TGG 0.517575 3_4:-61409456 None:intergenic
TTAAAGAAACTTTGTTTGGG+AGG 0.520741 3_4:-61410978 None:intergenic
CGATGAACTGAAATCTGCTA+TGG 0.524498 3_4:+61408497 Msa0511770:CDS
CATGTGATTGCAACAACTCA+TGG 0.532805 3_4:-61410926 None:intergenic
AACAGAATGAACTGATGCAT+GGG 0.546519 3_4:-61411015 None:intergenic
TTAAGTAAGTGTTCTAATGG+TGG 0.564372 3_4:+61411099 Msa0511770:three_prime_UTR
AAGGGCTGCTCGTAGTAAGC+AGG 0.566315 3_4:+61410827 Msa0511770:CDS
AAACAGAATGAACTGATGCA+TGG 0.574496 3_4:-61411016 None:intergenic
CTGAACTAAGACATCGTGCA+AGG 0.578215 3_4:+61410808 Msa0511770:CDS
GTTAACAATCCCAGTAGCCA+AGG 0.583367 3_4:-61409386 None:intergenic
ATCATAGCGAATGCAAGAAG+AGG 0.591910 3_4:-61410607 None:intergenic
ACTGACATAAATACTCCACT+TGG 0.602088 3_4:-61410571 None:intergenic
TCGCAAGAAGCAATAGAACA+TGG 0.614827 3_4:-61409412 None:intergenic
TGAACTGAAATCTGCTATGG+AGG 0.630102 3_4:+61408500 Msa0511770:CDS
AGAGACTTAATAGTATTCTG+GGG 0.632890 3_4:+61410509 Msa0511770:CDS
TGAACTAAGACATCGTGCAA+GGG 0.640138 3_4:+61410809 Msa0511770:CDS
CATGAGTTGTTGCAATCACA+TGG 0.651876 3_4:+61410927 Msa0511770:three_prime_UTR
TTTCAGTTCATCGATCGACA+TGG 0.652553 3_4:-61408487 None:intergenic
GAGACTTAATAGTATTCTGG+GGG 0.682914 3_4:+61410510 Msa0511770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAATTATCTATTTATTT+TGG + chr3_4:61408751-61408770 Msa0511770:intron 10.0%
!!! TTTGATATAATATGATTTTA+TGG + chr3_4:61409222-61409241 Msa0511770:intron 10.0%
!!! AAATTTCTAAAATGAGAAAA+TGG - chr3_4:61409292-61409311 None:intergenic 15.0%
!!! TTTTTTTTTGTTTTTGTTTC+AGG + chr3_4:61409361-61409380 Msa0511770:intron 15.0%
!! ACATTCCATAAAATTAAAAA+AGG - chr3_4:61409504-61409523 None:intergenic 15.0%
!!! TGTTTTTGAATAAACTATAA+AGG + chr3_4:61409524-61409543 Msa0511770:intron 15.0%
!!! TAAATATTTCTTTTAGAATG+AGG + chr3_4:61409950-61409969 Msa0511770:intron 15.0%
!! TAAGATATAATTGAATTGAT+AGG + chr3_4:61410241-61410260 Msa0511770:intron 15.0%
!! AAGATATAATTGAATTGATA+GGG + chr3_4:61410242-61410261 Msa0511770:intron 15.0%
!! TCATATTGAATATTAACTAT+CGG + chr3_4:61410685-61410704 Msa0511770:intron 15.0%
!!! TAATTAAAGAAACTTTGTTT+GGG - chr3_4:61410984-61411003 None:intergenic 15.0%
!! AAAAATAAGTAAATCCAAAC+AGG - chr3_4:61408941-61408960 None:intergenic 20.0%
!!! TTTATGGATCATATTACTTT+TGG + chr3_4:61409238-61409257 Msa0511770:intron 20.0%
!!! GCATTCCTTTTTTAATTTTA+TGG + chr3_4:61409496-61409515 Msa0511770:intron 20.0%
!! ATTATGTAGTCTATTCAATT+TGG + chr3_4:61409705-61409724 Msa0511770:intron 20.0%
!!! TATTCAATTTGGTAACATTA+TGG + chr3_4:61409716-61409735 Msa0511770:intron 20.0%
!!! TTCACTCTTTTGAAAATTTT+GGG - chr3_4:61409888-61409907 None:intergenic 20.0%
!!! ATTCACTCTTTTGAAAATTT+TGG - chr3_4:61409889-61409908 None:intergenic 20.0%
!!! TTTTCAAAAGAGTGAATATA+TGG + chr3_4:61409892-61409911 Msa0511770:intron 20.0%
!! GTAATTAAAGAAACTTTGTT+TGG - chr3_4:61410985-61411004 None:intergenic 20.0%
! CGAAGCAATAAAAAAGAATA+AGG - chr3_4:61408701-61408720 None:intergenic 25.0%
!! TTTTATTGCTTCGTCAATTA+TGG + chr3_4:61408708-61408727 Msa0511770:intron 25.0%
! TTATGGAGTTTAATTGAATC+TGG + chr3_4:61408725-61408744 Msa0511770:intron 25.0%
!!! TTGTATAAGTTGTTTTGCAT+AGG + chr3_4:61409031-61409050 Msa0511770:intron 25.0%
! AGAAAGTTAAGCTACATTAT+TGG - chr3_4:61410451-61410470 None:intergenic 25.0%
! ATAATGTAGCTTAACTTTCT+TGG + chr3_4:61410451-61410470 Msa0511770:intron 25.0%
! CTTAACAATCAAGTAACATA+AGG - chr3_4:61410778-61410797 None:intergenic 25.0%
!! TATGTTACTTGATTGTTAAG+TGG + chr3_4:61410778-61410797 Msa0511770:CDS 25.0%
!!! GATTTTGATGGATTAAACTA+AGG + chr3_4:61410894-61410913 Msa0511770:three_prime_UTR 25.0%
! TTGTTAAGTAAGTGTTCTAA+TGG + chr3_4:61411096-61411115 Msa0511770:three_prime_UTR 25.0%
CCTAAAAAGTTATCTTTAGC+AGG - chr3_4:61408591-61408610 None:intergenic 30.0%
! CCTGCTAAAGATAACTTTTT+AGG + chr3_4:61408588-61408607 Msa0511770:CDS 30.0%
GTTTCTTTCATGCTATTGAT+TGG + chr3_4:61408610-61408629 Msa0511770:CDS 30.0%
! TGTCATGTTTTGTACTTGTT+TGG + chr3_4:61408818-61408837 Msa0511770:intron 30.0%
! ATGCGAGTTGTATATTGATT+CGG + chr3_4:61408896-61408915 Msa0511770:intron 30.0%
TTCGGTACTAAATTGAACTT+AGG + chr3_4:61408914-61408933 Msa0511770:intron 30.0%
TCGGTACTAAATTGAACTTA+GGG + chr3_4:61408915-61408934 Msa0511770:intron 30.0%
ACAAATAAATAAGCTTGTCG+AGG - chr3_4:61409015-61409034 None:intergenic 30.0%
! AACCATTGAGTTGTCAAATA+GGG + chr3_4:61409172-61409191 Msa0511770:intron 30.0%
GACAATATTAGTAAGTTTGC+AGG - chr3_4:61409329-61409348 None:intergenic 30.0%
!! GTGATAAGTTGATTATCATG+GGG - chr3_4:61409615-61409634 None:intergenic 30.0%
!! GGTGATAAGTTGATTATCAT+GGG - chr3_4:61409616-61409635 None:intergenic 30.0%
AATGCAGAAAATTAAAGGCA+GGG - chr3_4:61409637-61409656 None:intergenic 30.0%
!! TGCCTTTAATTTTCTGCATT+GGG + chr3_4:61409637-61409656 Msa0511770:intron 30.0%
TCAAAGCATGATAGGATAAA+TGG - chr3_4:61409844-61409863 None:intergenic 30.0%
TTTATCCTATCATGCTTTGA+TGG + chr3_4:61409844-61409863 Msa0511770:intron 30.0%
AGTTGAAGTTTGAATACCTA+TGG + chr3_4:61410104-61410123 Msa0511770:intron 30.0%
TGTCTATCTGATACAAGTTT+AGG - chr3_4:61410177-61410196 None:intergenic 30.0%
GATGTAAGCACTAAAAACAT+GGG - chr3_4:61410219-61410238 None:intergenic 30.0%
AGATGTAAGCACTAAAAACA+TGG - chr3_4:61410220-61410239 None:intergenic 30.0%
ATTGAATTGATAGGGAAGAA+TGG + chr3_4:61410250-61410269 Msa0511770:intron 30.0%
! TCATTTTCCATGCACATATT+TGG + chr3_4:61410356-61410375 Msa0511770:intron 30.0%
GAAAACATAAAACTGACATC+AGG - chr3_4:61410399-61410418 None:intergenic 30.0%
TGAGAGACTTAATAGTATTC+TGG + chr3_4:61410507-61410526 Msa0511770:CDS 30.0%
GAGAGACTTAATAGTATTCT+GGG + chr3_4:61410508-61410527 Msa0511770:CDS 30.0%
AGAGACTTAATAGTATTCTG+GGG + chr3_4:61410509-61410528 Msa0511770:CDS 30.0%
!!! CAAAACTATTTTGATCCAAG+TGG + chr3_4:61410556-61410575 Msa0511770:CDS 30.0%
GAGTATTTATGTCAGTTCTT+TGG + chr3_4:61410578-61410597 Msa0511770:CDS 30.0%
AGGAATAGTTGATCTATAGT+TGG + chr3_4:61410847-61410866 Msa0511770:exon 30.0%
! TGAATGTAGTCAGATTTTGA+TGG + chr3_4:61410882-61410901 Msa0511770:three_prime_UTR 30.0%
AGAAAGACAACTCATTTGTA+TGG - chr3_4:61410953-61410972 None:intergenic 30.0%
! TTAAAGAAACTTTGTTTGGG+AGG - chr3_4:61410981-61411000 None:intergenic 30.0%
TTAAGTAAGTGTTCTAATGG+TGG + chr3_4:61411099-61411118 Msa0511770:three_prime_UTR 30.0%
TTCACTTTCTTTGCATTCTC+TGG - chr3_4:61408426-61408445 None:intergenic 35.0%
! CTTTCATGCTATTGATTGGA+AGG + chr3_4:61408614-61408633 Msa0511770:CDS 35.0%
ATGCTAAAAGAGAAGGTTTG+CGG - chr3_4:61408666-61408685 None:intergenic 35.0%
GAGAGAAATGCTAAAAGAGA+AGG - chr3_4:61408673-61408692 None:intergenic 35.0%
! CTGGTTGGTACAAAAGTTTA+GGG - chr3_4:61409150-61409169 None:intergenic 35.0%
! CAACCATTGAGTTGTCAAAT+AGG + chr3_4:61409171-61409190 Msa0511770:intron 35.0%
! ACCATTGAGTTGTCAAATAG+GGG + chr3_4:61409173-61409192 Msa0511770:intron 35.0%
!! TGTTTTTGTTTCAGGAACCT+TGG + chr3_4:61409369-61409388 Msa0511770:intron 35.0%
!! TAAGTTGATTATCATGGGGA+AGG - chr3_4:61409611-61409630 None:intergenic 35.0%
!! GGGTGATAAGTTGATTATCA+TGG - chr3_4:61409617-61409636 None:intergenic 35.0%
CAATGCAGAAAATTAAAGGC+AGG - chr3_4:61409638-61409657 None:intergenic 35.0%
!! CTGCCTTTAATTTTCTGCAT+TGG + chr3_4:61409636-61409655 Msa0511770:intron 35.0%
CACCCAATGCAGAAAATTAA+AGG - chr3_4:61409642-61409661 None:intergenic 35.0%
CAATCTTTATCCCACTAAGT+GGG - chr3_4:61409765-61409784 None:intergenic 35.0%
TCAATCTTTATCCCACTAAG+TGG - chr3_4:61409766-61409785 None:intergenic 35.0%
TTGCTGTAGTCTATTCTGTT+TGG + chr3_4:61409795-61409814 Msa0511770:intron 35.0%
TATTATCTTAGCCACTGATC+AGG + chr3_4:61409983-61410002 Msa0511770:intron 35.0%
CTAGTTCGATAGCTATTTAG+AGG + chr3_4:61410029-61410048 Msa0511770:intron 35.0%
! CAGGAAAGAATACAGTGTTT+TGG + chr3_4:61410074-61410093 Msa0511770:intron 35.0%
GTATATCTTCTCTACACCAT+AGG - chr3_4:61410123-61410142 None:intergenic 35.0%
AATTGATAGGGAAGAATGGA+TGG + chr3_4:61410254-61410273 Msa0511770:intron 35.0%
TGTGTGCATCTTATCTAAAC+CGG - chr3_4:61410310-61410329 None:intergenic 35.0%
GTAAACACCAAATATGTGCA+TGG - chr3_4:61410366-61410385 None:intergenic 35.0%
!! TCTTGGAAATTGTTTTGCAG+TGG + chr3_4:61410468-61410487 Msa0511770:intron 35.0%
GAGACTTAATAGTATTCTGG+GGG + chr3_4:61410510-61410529 Msa0511770:CDS 35.0%
ACTGACATAAATACTCCACT+TGG - chr3_4:61410574-61410593 None:intergenic 35.0%
TTTATGTCAGTTCTTTGGTC+TGG + chr3_4:61410583-61410602 Msa0511770:CDS 35.0%
TGCATTCGCTATGATAATCT+TGG + chr3_4:61410615-61410634 Msa0511770:CDS 35.0%
TTCGCTATGATAATCTTGGT+TGG + chr3_4:61410619-61410638 Msa0511770:intron 35.0%
CATAATGGTTGTGACATAAG+GGG - chr3_4:61410650-61410669 None:intergenic 35.0%
CCATAATGGTTGTGACATAA+GGG - chr3_4:61410651-61410670 None:intergenic 35.0%
ACCATAATGGTTGTGACATA+AGG - chr3_4:61410652-61410671 None:intergenic 35.0%
AACAGAATGAACTGATGCAT+GGG - chr3_4:61411018-61411037 None:intergenic 35.0%
AAACAGAATGAACTGATGCA+TGG - chr3_4:61411019-61411038 None:intergenic 35.0%
TGTAACTCTTCCAAAAACGA+AGG + chr3_4:61411040-61411059 Msa0511770:three_prime_UTR 35.0%
! TACAAGTGATCCTTCGTTTT+TGG - chr3_4:61411053-61411072 None:intergenic 35.0%
GTGCTGAAGTAGTCAATTTC+CGG + chr3_4:61408446-61408465 Msa0511770:five_prime_UTR 40.0%
TTTCAGTTCATCGATCGACA+TGG - chr3_4:61408490-61408509 None:intergenic 40.0%
CGATGAACTGAAATCTGCTA+TGG + chr3_4:61408497-61408516 Msa0511770:CDS 40.0%
TGAACTGAAATCTGCTATGG+AGG + chr3_4:61408500-61408519 Msa0511770:CDS 40.0%
AATTGAACTTAGGGCCTGTT+TGG + chr3_4:61408924-61408943 Msa0511770:intron 40.0%
! GTATTAATCAGGGGCTTGTT+TGG - chr3_4:61409074-61409093 None:intergenic 40.0%
CGCGGATTTGTATTAATCAG+GGG - chr3_4:61409083-61409102 None:intergenic 40.0%
CCGCGGATTTGTATTAATCA+GGG - chr3_4:61409084-61409103 None:intergenic 40.0%
CCCTGATTAATACAAATCCG+CGG + chr3_4:61409081-61409100 Msa0511770:intron 40.0%
ACCGCGGATTTGTATTAATC+AGG - chr3_4:61409085-61409104 None:intergenic 40.0%
! CCTGGTTGGTACAAAAGTTT+AGG - chr3_4:61409151-61409170 None:intergenic 40.0%
! CCTAAACTTTTGTACCAACC+AGG + chr3_4:61409148-61409167 Msa0511770:intron 40.0%
AAACATAAACTCGCGCTTCA+GGG - chr3_4:61409199-61409218 None:intergenic 40.0%
TCGCAAGAAGCAATAGAACA+TGG - chr3_4:61409415-61409434 None:intergenic 40.0%
TTCTTGCGATTATTGTCTCC+AGG + chr3_4:61409426-61409445 Msa0511770:CDS 40.0%
!! CTGAAAGTTGGTATTCTTCC+TGG - chr3_4:61409447-61409466 None:intergenic 40.0%
GAACAAGCACATCTGAAAGT+TGG - chr3_4:61409459-61409478 None:intergenic 40.0%
AATGCTACGTACACGTCAAA+AGG - chr3_4:61409481-61409500 None:intergenic 40.0%
CTTCAAACAGAAGTGAAGTG+AGG - chr3_4:61409582-61409601 None:intergenic 40.0%
TGCAACCATCAAAGCATGAT+AGG - chr3_4:61409852-61409871 None:intergenic 40.0%
GATAGCTATTTAGAGGAGAG+TGG + chr3_4:61410036-61410055 Msa0511770:intron 40.0%
GTGGACAGGTTATAAATGAC+AGG + chr3_4:61410055-61410074 Msa0511770:intron 40.0%
TTAGACGCAAGAATGCACAA+TGG - chr3_4:61410152-61410171 None:intergenic 40.0%
AAGCACTAAAAACATGGGCA+TGG - chr3_4:61410214-61410233 None:intergenic 40.0%
! TAGGGAAGAATGGATGGTTT+TGG + chr3_4:61410260-61410279 Msa0511770:intron 40.0%
! AGGGAAGAATGGATGGTTTT+GGG + chr3_4:61410261-61410280 Msa0511770:intron 40.0%
!!! GAATGGATGGTTTTGGGTTT+TGG + chr3_4:61410267-61410286 Msa0511770:intron 40.0%
GTGTGCATCTTATCTAAACC+GGG - chr3_4:61410309-61410328 None:intergenic 40.0%
CAGACACAAGAATGCACAAT+GGG - chr3_4:61410335-61410354 None:intergenic 40.0%
ACAGACACAAGAATGCACAA+TGG - chr3_4:61410336-61410355 None:intergenic 40.0%
! ATAGTATTCTGGGGGAAAAC+TGG + chr3_4:61410518-61410537 Msa0511770:CDS 40.0%
ATCATAGCGAATGCAAGAAG+AGG - chr3_4:61410610-61410629 None:intergenic 40.0%
CCCTTATGTCACAACCATTA+TGG + chr3_4:61410648-61410667 Msa0511770:intron 40.0%
TGTCACAACCATTATGGTGA+CGG + chr3_4:61410654-61410673 Msa0511770:intron 40.0%
AAAGATGACCGTCACCATAA+TGG - chr3_4:61410665-61410684 None:intergenic 40.0%
TGAACTAAGACATCGTGCAA+GGG + chr3_4:61410809-61410828 Msa0511770:CDS 40.0%
CATGTGATTGCAACAACTCA+TGG - chr3_4:61410929-61410948 None:intergenic 40.0%
CATGAGTTGTTGCAATCACA+TGG + chr3_4:61410927-61410946 Msa0511770:three_prime_UTR 40.0%
CTGATGCATGGGAAAATTCT+TGG - chr3_4:61411007-61411026 None:intergenic 40.0%
GAAATTGGAGGGAGAAGAGT+AGG - chr3_4:61408642-61408661 None:intergenic 45.0%
! ATCCGCGGTGTGTATCTTTT+TGG + chr3_4:61409096-61409115 Msa0511770:intron 45.0%
GTCCAAAAAGATACACACCG+CGG - chr3_4:61409101-61409120 None:intergenic 45.0%
TTGACAACTCAATGGTTGCC+TGG - chr3_4:61409169-61409188 None:intergenic 45.0%
GCCCCTATTTGACAACTCAA+TGG - chr3_4:61409177-61409196 None:intergenic 45.0%
CAAACATAAACTCGCGCTTC+AGG - chr3_4:61409200-61409219 None:intergenic 45.0%
TTTCAGGAACCTTGGCTACT+GGG + chr3_4:61409377-61409396 Msa0511770:intron 45.0%
GTTAACAATCCCAGTAGCCA+AGG - chr3_4:61409389-61409408 None:intergenic 45.0%
GCATTGGGTGAAATACTGAG+CGG + chr3_4:61409652-61409671 Msa0511770:intron 45.0%
AGCGGCGATAACGTGATATT+TGG + chr3_4:61409670-61409689 Msa0511770:intron 45.0%
CTTTATCCCACTAAGTGGGT+CGG - chr3_4:61409761-61409780 None:intergenic 45.0%
TATCTCCATGACCTGATCAG+TGG - chr3_4:61409997-61410016 None:intergenic 45.0%
CTATTTAGAGGAGAGTGGAC+AGG + chr3_4:61410041-61410060 Msa0511770:intron 45.0%
!!! GATGGTTTTGGGTTTTGGAG+TGG + chr3_4:61410272-61410291 Msa0511770:intron 45.0%
!!! TGGGTTTTGGAGTGGAACTT+TGG + chr3_4:61410280-61410299 Msa0511770:intron 45.0%
!! GGAAATTGTTTTGCAGTGGC+TGG + chr3_4:61410472-61410491 Msa0511770:intron 45.0%
CTGAACTAAGACATCGTGCA+AGG + chr3_4:61410808-61410827 Msa0511770:CDS 45.0%
AGGTTTGCGGCGAAATTGGA+GGG - chr3_4:61408653-61408672 None:intergenic 50.0%
AAGGTTTGCGGCGAAATTGG+AGG - chr3_4:61408654-61408673 None:intergenic 50.0%
GAGAAGGTTTGCGGCGAAAT+TGG - chr3_4:61408657-61408676 None:intergenic 50.0%
CAACTCAATGGTTGCCTGGT+TGG - chr3_4:61409165-61409184 None:intergenic 50.0%
GTTTCAGGAACCTTGGCTAC+TGG + chr3_4:61409376-61409395 Msa0511770:intron 50.0%
ATGTAGCCGACCCACTTAGT+GGG + chr3_4:61409752-61409771 Msa0511770:intron 50.0%
CTTAGCCACTGATCAGGTCA+TGG + chr3_4:61409989-61410008 Msa0511770:intron 50.0%
GGAGTGGAACTTTGGATACC+CGG + chr3_4:61410288-61410307 Msa0511770:intron 50.0%
GCGTTGCGATCTGCAGTTAC+CGG - chr3_4:61408468-61408487 None:intergenic 55.0%
CACTAAGTGGGTCGGCTACA+TGG - chr3_4:61409753-61409772 None:intergenic 55.0%
CATGTAGCCGACCCACTTAG+TGG + chr3_4:61409751-61409770 Msa0511770:intron 55.0%
AAGGGCTGCTCGTAGTAAGC+AGG + chr3_4:61410827-61410846 Msa0511770:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 61408395 61411167 61408395 ID=Msa0511770;Name=Msa0511770
chr3_4 mRNA 61408395 61411167 61408395 ID=Msa0511770-mRNA-1;Parent=Msa0511770;Name=Msa0511770-mRNA-1;_AED=0.11;_eAED=0.11;_QI=94|1|1|1|0|0.5|4|313|165
chr3_4 exon 61408395 61408635 61408395 ID=Msa0511770-mRNA-1:exon:14980;Parent=Msa0511770-mRNA-1
chr3_4 exon 61409383 61409488 61409383 ID=Msa0511770-mRNA-1:exon:14981;Parent=Msa0511770-mRNA-1
chr3_4 exon 61410488 61410636 61410488 ID=Msa0511770-mRNA-1:exon:14982;Parent=Msa0511770-mRNA-1
chr3_4 exon 61410759 61411167 61410759 ID=Msa0511770-mRNA-1:exon:14983;Parent=Msa0511770-mRNA-1
chr3_4 five_prime_UTR 61408395 61408488 61408395 ID=Msa0511770-mRNA-1:five_prime_utr;Parent=Msa0511770-mRNA-1
chr3_4 CDS 61408489 61408635 61408489 ID=Msa0511770-mRNA-1:cds;Parent=Msa0511770-mRNA-1
chr3_4 CDS 61409383 61409488 61409383 ID=Msa0511770-mRNA-1:cds;Parent=Msa0511770-mRNA-1
chr3_4 CDS 61410488 61410636 61410488 ID=Msa0511770-mRNA-1:cds;Parent=Msa0511770-mRNA-1
chr3_4 CDS 61410759 61410854 61410759 ID=Msa0511770-mRNA-1:cds;Parent=Msa0511770-mRNA-1
chr3_4 three_prime_UTR 61410855 61411167 61410855 ID=Msa0511770-mRNA-1:three_prime_utr;Parent=Msa0511770-mRNA-1
Gene Sequence

>Msa0511770

ATGTCGATCGATGAACTGAAATCTGCTATGGAGGAACACGTTGATCTTATGTCAGATCTTGTTCAGAAAATCTCTTCTGAACTTCGTACTAATCTTCGTCCTGCTAAAGATAACTTTTTAGGTTTCTTTCATGCTATTGATTGGAAGGAACCTTGGCTACTGGGATTGTTAACATTCCATGTTCTATTGCTTCTTGCGATTATTGTCTCCAGGAAGAATACCAACTTTCAGATGTGCTTGTTCCTTTTGACGTTGGCTGGTGTATATCTTGCTGAGAGACTTAATAGTATTCTGGGGGAAAACTGGAAAAGCTTCTCTAGTCAAAACTATTTTGATCCAAGTGGAGTATTTATGTCAGTTCTTTGGTCTGGTCCTCTTCTTGCATTCGCTATGATAATCTTGATCAATACACTCTTTTCCTTATGTTACTTGATTGTTAAGTGGAAAAGAGCTGAACTAAGACATCGTGCAAGGGCTGCTCGTAGTAAGCAGGAATAG

Protein sequence

>Msa0511770

MSIDELKSAMEEHVDLMSDLVQKISSELRTNLRPAKDNFLGFFHAIDWKEPWLLGLLTFHVLLLLAIIVSRKNTNFQMCLFLLTLAGVYLAERLNSILGENWKSFSSQNYFDPSGVFMSVLWSGPLLAFAMIILINTLFSLCYLIVKWKRAELRHRARAARSKQE*