AlfalfaGEDB | Msa1275110

M. sativa cultivar zhongmu-4 / Msa1275110

KEGG: K06268
GO: -
PFAM: PF00036.35

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1275110	sp\|Q3HRN8\|CNBL9_ORYSJ	57.198	257	83	3	9	238	17	273	1.80e-98	291

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1275110	A0A072TLP6	96.639	238	8	0	1	238	1	238	1.40e-163	461

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010490	Msa1275110	0.822422	2.388804e-53	-8.615850e-47
Msa0010500	Msa1275110	0.813937	1.987420e-51	-8.615850e-47
Msa0020390	Msa1275110	0.843183	1.638952e-58	-8.615850e-47
Msa0028930	Msa1275110	0.804540	2.056730e-49	-8.615850e-47
Msa0029260	Msa1275110	0.802661	5.046522e-49	-8.615850e-47
Msa0031820	Msa1275110	0.807916	4.001695e-50	-8.615850e-47
Msa0033110	Msa1275110	0.806930	6.475872e-50	-8.615850e-47
Msa0033880	Msa1275110	0.830076	3.599606e-55	-8.615850e-47
Msa0035120	Msa1275110	0.814924	1.202404e-51	-8.615850e-47
Msa0035130	Msa1275110	0.822692	2.067170e-53	-8.615850e-47

Showing 1 to 10 of 314 entries

Previous1 2 3 4 5…32Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1275110	MtrunA17_Chr8g0341941	96.639	238	8	0	1	238	1	238	2.70e-167	461
Msa1275110	MtrunA17_Chr1g0151621	59.556	225	87	2	14	238	12	232	5.39e-94	276
Msa1275110	MtrunA17_Chr3g0102821	60.116	173	69	0	66	238	36	208	6.54e-73	221
Msa1275110	MtrunA17_Chr4g0076551	59.538	173	70	0	66	238	37	209	9.16e-73	221
Msa1275110	MtrunA17_Chr5g0446931	57.065	184	79	0	55	238	25	208	1.12e-72	221
Msa1275110	MtrunA17_Chr2g0290751	56.627	166	72	0	72	237	45	210	1.97e-66	204
Msa1275110	MtrunA17_Chr8g0388331	51.741	201	88	1	38	238	2	193	5.78e-66	203
Msa1275110	MtrunA17_Chr2g0290761	56.627	166	72	0	72	237	45	210	1.20e-65	202
Msa1275110	MtrunA17_Chr8g0346911	53.226	186	87	0	52	237	30	215	2.55e-65	202
Msa1275110	MtrunA17_Chr4g0055421	48.756	201	94	1	38	238	2	193	2.86e-65	201

Showing 1 to 10 of 19 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1275110	AT4G33000.2	61.765	238	82	2	1	238	1	229	1.33e-99	290
Msa1275110	AT4G33000.1	62.174	230	79	1	9	238	18	239	7.20e-99	288
Msa1275110	AT4G33000.4	60.697	201	70	2	1	201	1	192	1.51e-79	237
Msa1275110	AT4G33000.6	60.697	201	70	2	1	201	1	192	1.51e-79	237
Msa1275110	AT4G33000.5	61.000	200	69	2	1	200	1	191	5.10e-79	237
Msa1275110	AT4G26570.1	61.850	173	66	0	66	238	36	208	1.15e-74	226
Msa1275110	AT5G55990.1	53.922	204	85	1	35	238	14	208	7.68e-74	224
Msa1275110	AT5G55990.2	53.922	204	85	1	35	238	14	208	7.68e-74	224
Msa1275110	AT4G26570.2	60.452	177	66	1	66	238	36	212	1.50e-72	221
Msa1275110	AT5G24270.4	55.224	201	85	1	38	238	2	197	1.93e-71	218

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

Find 34 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTTATACCCTATCA+AGG	0.515442	8_3:+8951022	None:intergenic
AACAATTACCTTATCAATAA+TGG	0.205420	8_3:+8949462	None:intergenic
ACTTCTTCCTCAAGGGATCA+CGG	0.570205	8_3:+8952915	None:intergenic
AGTGGAAAGCATTTGTCATT+CGG	0.446196	8_3:-8949320	Msa1275110:CDS
AGTTAATGTGAATGAAATTG+AGG	0.637849	8_3:-8952440	Msa1275110:CDS
AGTTGTTCAATCATCGACGA+TGG	0.653713	8_3:-8952391	Msa1275110:CDS
ATAAGATCAGTAAAGAAGAG+TGG	0.521942	8_3:-8949338	Msa1275110:CDS
ATGGTGTTCATTCCATTGAT+TGG	0.438204	8_3:-8952714	Msa1275110:CDS
ATTCTGACCGTGATCCCTTG+AGG	0.648094	8_3:-8952922	Msa1275110:five_prime_UTR
ATTGCAAAACTTCTTCCTCA+AGG	0.544908	8_3:+8952907	None:intergenic

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGGTATGAGATAAAAAGTAG+AGG	-	chr8_3:8950389-8950408	Msa1275110:intron	30.0%
TAGTTGTTGGATCAATCTAT+CGG	-	chr8_3:8950671-8950690	Msa1275110:intron	30.0%
GTTGTTGAAAAATCCTTTGA+AGG	-	chr8_3:8950791-8950810	Msa1275110:intron	30.0%
TAATCTATGAGGAGCTAATT+TGG	-	chr8_3:8950833-8950852	Msa1275110:intron	30.0%
TGATTCAGTCGATTAAAGAT+CGG	+	chr8_3:8950895-8950914	None:intergenic	30.0%
TCACATCATTTCATTGAAGT+TGG	+	chr8_3:8950981-8951000	None:intergenic	30.0%
TAACAACTTAGATTGTGATC+TGG	-	chr8_3:8951004-8951023	Msa1275110:intron	30.0%
AACAACTTAGATTGTGATCT+GGG	-	chr8_3:8951005-8951024	Msa1275110:intron	30.0%
AAAATGCTTATACCCTATCA+AGG	+	chr8_3:8951240-8951259	None:intergenic	30.0%
GTGTGAACAAAATGAAAGTA+GGG	+	chr8_3:8951415-8951434	None:intergenic	30.0%

Showing 1 to 10 of 196 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	8949275	8953006	8949275	ID=Msa1275110;Name=Msa1275110
chr8_3	mRNA	8949275	8953006	8949275	ID=Msa1275110-mRNA-1;Parent=Msa1275110;Name=Msa1275110-mRNA-1;_AED=0.20;_eAED=0.20;_QI=111\|1\|0.87\|1\|1\|1\|8\|0\|238
chr8_3	exon	8949275	8949391	8949275	ID=Msa1275110-mRNA-1:exon:3766;Parent=Msa1275110-mRNA-1
chr8_3	exon	8949471	8949551	8949471	ID=Msa1275110-mRNA-1:exon:3765;Parent=Msa1275110-mRNA-1
chr8_3	exon	8949953	8950005	8949953	ID=Msa1275110-mRNA-1:exon:3764;Parent=Msa1275110-mRNA-1
chr8_3	exon	8950109	8950217	8950109	ID=Msa1275110-mRNA-1:exon:3763;Parent=Msa1275110-mRNA-1
chr8_3	exon	8951035	8951094	8951035	ID=Msa1275110-mRNA-1:exon:3762;Parent=Msa1275110-mRNA-1
chr8_3	exon	8952378	8952460	8952378	ID=Msa1275110-mRNA-1:exon:3761;Parent=Msa1275110-mRNA-1
chr8_3	exon	8952580	8952769	8952580	ID=Msa1275110-mRNA-1:exon:3760;Parent=Msa1275110-mRNA-1
chr8_3	exon	8952872	8953006	8952872	ID=Msa1275110-mRNA-1:exon:3759;Parent=Msa1275110-mRNA-1
chr8_3	five_prime_UTR	8952896	8953006	8952896	ID=Msa1275110-mRNA-1:five_prime_utr;Parent=Msa1275110-mRNA-1
chr8_3	CDS	8952872	8952895	8952872	ID=Msa1275110-mRNA-1:cds;Parent=Msa1275110-mRNA-1
chr8_3	CDS	8952580	8952769	8952580	ID=Msa1275110-mRNA-1:cds;Parent=Msa1275110-mRNA-1
chr8_3	CDS	8952378	8952460	8952378	ID=Msa1275110-mRNA-1:cds;Parent=Msa1275110-mRNA-1
chr8_3	CDS	8951035	8951094	8951035	ID=Msa1275110-mRNA-1:cds;Parent=Msa1275110-mRNA-1
chr8_3	CDS	8950109	8950217	8950109	ID=Msa1275110-mRNA-1:cds;Parent=Msa1275110-mRNA-1
chr8_3	CDS	8949953	8950005	8949953	ID=Msa1275110-mRNA-1:cds;Parent=Msa1275110-mRNA-1
chr8_3	CDS	8949471	8949551	8949471	ID=Msa1275110-mRNA-1:cds;Parent=Msa1275110-mRNA-1
chr8_3	CDS	8949275	8949391	8949275	ID=Msa1275110-mRNA-1:cds;Parent=Msa1275110-mRNA-1

Gene Sequence

>Msa1275110

ATGGAAGAAAGCTCTCTATCTCTGGGATCGAGGTTGACGATTGGAGAAACACTGTGTATGGTGTTCATTCCATTGATTGGTATAGCTGAAGCTTTGTTTTACAGCTTAGCTGGTTGCTTCGATTTTCGGAGTTCAGAGCAGAAGAAGAAAGAAAAAGAGAAGAAGATGTTTTCTACCTTTGAAGAGATTCTCGCACTCGCTAACGATTCTCCTTTTAATGTGAATGAAATTGAGGCGTTGCATGAGTTATACAAGAAGTTGAGTTGTTCAATCATCGACGATGGTCTCATCCACAAAGAAGAGCTTACATTGGCACTATTGAAGACCTCAGTTGGCAAGAATCTTTTCCTTGATAGGGTGTTTGATCTCTTTGATGAAAAAAAGAATGGTGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTTATACTCCTTTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAACGAGAAGAAGTTCGGGAAATGGTGGTTGCCATTTTGTCAGAATGTGGCATGGATGTGGAAAATGAAATCCTTGAATCCATTATTGATAAGACATTTCAAGATGCCGATGCTGACAAAGATGATAAGATCAGTAAAGAAGAGTGGAAAGCATTTGTCATTCGGAACCCATCACTCTTGAGGCACATGACTCTTCCTAATCTGAAGTAA

Protein sequence

>Msa1275110

MEESSLSLGSRLTIGETLCMVFIPLIGIAEALFYSLAGCFDFRSSEQKKKEKEKKMFSTFEEILALANDSPFNVNEIEALHELYKKLSCSIIDDGLIHKEELTLALLKTSVGKNLFLDRVFDLFDEKKNGVIEFEEFVHALSVFHPYTPLEKKIDFAFRLYDLRQTGYIEREEVREMVVAILSECGMDVENEILESIIDKTFQDADADKDDKISKEEWKAFVIRNPSLLRHMTLPNLK*