AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1351540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351540 MtrunA17_Chr4g0074251 96.798 531 16 1 1 531 1 530 0.0 1059
Msa1351540 MtrunA17_Chr4g0074231 96.610 531 17 1 1 531 1 530 0.0 1057
Msa1351540 MtrunA17_Chr4g0074211 86.919 344 8 1 188 531 18 324 0.0 603
Msa1351540 MtrunA17_Chr4g0074221 95.062 162 7 1 1 162 1 161 6.79e-106 313
Msa1351540 MtrunA17_Chr5g0432281 24.401 459 253 11 52 477 54 451 2.32e-26 112
Msa1351540 MtrunA17_Chr5g0432271 30.968 155 93 4 33 175 36 188 1.01e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351540 AT1G20370.1 57.426 505 172 8 16 502 12 491 0.0 563
Msa1351540 AT1G76120.1 59.322 472 155 8 32 501 1 437 0.0 548
Msa1351540 AT1G76120.2 56.777 391 132 8 32 420 1 356 2.66e-143 417
Msa1351540 AT2G30320.1 37.143 140 76 3 52 179 60 199 5.13e-19 90.5

Find 140 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAGCTTTGTATGTTTC+TGG 0.086550 tig0012323:+34023 Msa1351540:CDS
CTTACCCTCGTTGTCATTAA+TGG 0.129147 tig0012323:-34567 None:intergenic
CCCCTTTCGTGTCTATTATT+TGG 0.170580 tig0012323:+35601 Msa1351540:three_prime_UTR
CATGGGTATCTTTCCACTTC+TGG 0.173591 tig0012323:-35211 None:intergenic
GATTCTGAAATGAGGGTTTA+AGG 0.211617 tig0012323:+33357 Msa1351540:five_prime_UTR
TGCTGTTGGTCAGGTTGTTT+CGG 0.216572 tig0012323:+34124 Msa1351540:CDS
GCTGTTGGTCAGGTTGTTTC+GGG 0.226417 tig0012323:+34125 Msa1351540:CDS
TTCTTATCGCTTATAAATAA+TGG 0.237433 tig0012323:+33752 Msa1351540:exon
TTACTGCGGTGTTGGTTATC+AGG 0.256135 tig0012323:+33956 Msa1351540:CDS
GTGAGGGAAGGTTTGAATTA+AGG 0.305638 tig0012323:-34184 None:intergenic
GGTAGACATCTTAACCTTCT+TGG 0.314194 tig0012323:-33850 None:intergenic
CCCTCACAGATACGAATCTT+TGG 0.317752 tig0012323:+34200 Msa1351540:CDS
TATTGCTTCCACAGAATATA+AGG 0.337574 tig0012323:+35301 Msa1351540:CDS
CTAGCTATCGTTTAGGTTTG+TGG 0.340592 tig0012323:+33722 Msa1351540:intron
CTTTCATTGACACCTCTTCA+TGG 0.363909 tig0012323:-35229 None:intergenic
GAGACTGTATTGGCTAGTTT+AGG 0.366065 tig0012323:+34332 Msa1351540:CDS
GAAAGTCCACGATCCTGTTC+AGG 0.366757 tig0012323:-34053 None:intergenic
GCAGATCTGGATAGTTTCTA+TGG 0.367344 tig0012323:-35358 None:intergenic
TAAAACTGTGGTTTCTGATC+AGG 0.376101 tig0012323:+34613 Msa1351540:CDS
ATCGTTTAGGTTTGTGGCAT+CGG 0.387114 tig0012323:+33728 Msa1351540:intron
GGTGGATCTGAGAATAATTT+AGG 0.393164 tig0012323:+34656 Msa1351540:CDS
CCGTCAAGGATGCGCAGATC+TGG 0.394239 tig0012323:-35371 None:intergenic
TTAGAATTTACTTCTTCAAC+TGG 0.399023 tig0012323:-34593 None:intergenic
TTCTTTGCTTACTGCGGTGT+TGG 0.404138 tig0012323:+33948 Msa1351540:CDS
AGGAAGGAACTGTTGGTCTA+TGG 0.410886 tig0012323:+35321 Msa1351540:CDS
AGGAGTTAGTGCTGTTGGTC+AGG 0.420318 tig0012323:+34115 Msa1351540:CDS
CGGTCAGCTAGAACTGATAA+AGG 0.424782 tig0012323:+34095 Msa1351540:CDS
CCAGATCTGCGCATCCTTGA+CGG 0.424998 tig0012323:+35371 Msa1351540:CDS
TTCTGGAGCTGTACCTGAAC+AGG 0.432347 tig0012323:+34040 Msa1351540:CDS
GACTTTCTAAACGCTATGAC+TGG 0.432785 tig0012323:+34069 Msa1351540:CDS
ACCAAATAATAGACACGAAA+GGG 0.438656 tig0012323:-35602 None:intergenic
TTATTCTGGTCGTGAAGTTA+TGG 0.445236 tig0012323:-34805 None:intergenic
CAGATCTGCGCATCCTTGAC+GGG 0.449223 tig0012323:+35372 Msa1351540:CDS
CCTTCAATAGTCTTTGCACC+AGG 0.460741 tig0012323:-33993 None:intergenic
TTACTTCATATAACCAGAAG+TGG 0.464262 tig0012323:+35198 Msa1351540:CDS
TTCAGTAGCCGCTGAAGAGC+CGG 0.467878 tig0012323:+33824 Msa1351540:CDS
TCTTGCGTCTGATCTACTTC+CGG 0.470110 tig0012323:+33397 Msa1351540:five_prime_UTR
TACAACTGCTGAAGGAAGTA+AGG 0.470835 tig0012323:+33896 Msa1351540:CDS
CCTGGTGCAAAGACTATTGA+AGG 0.472541 tig0012323:+33993 Msa1351540:CDS
GATACGGCTGCCAATGGAAG+TGG 0.482571 tig0012323:+34710 Msa1351540:CDS
GTGCCTACTGCACCCGAGGT+TGG 0.486292 tig0012323:+35152 Msa1351540:CDS
AATGAAAGCATATGAGAAAG+AGG 0.488811 tig0012323:+35244 Msa1351540:CDS
TACTGCGGTGTTGGTTATCA+GGG 0.489262 tig0012323:+33957 Msa1351540:CDS
TCATCAGATACGGAAGATGA+TGG 0.493754 tig0012323:+34943 Msa1351540:CDS
GGCCCGAAGAAAATTTCATT+CGG 0.495388 tig0012323:-35465 None:intergenic
CATTAATGACAACGAGGGTA+AGG 0.495640 tig0012323:+34568 Msa1351540:CDS
CAAAGAAAATCGCTACCTTA+CGG 0.496906 tig0012323:-33932 None:intergenic
ATTTGTGAAGTGTGAGATTG+TGG 0.497348 tig0012323:+34904 Msa1351540:CDS
ATCTTAACCTTCTTGGCCAC+CGG 0.498713 tig0012323:-33843 None:intergenic
GAGAGGAAGAAAAGTGGAAG+GGG 0.504504 tig0012323:+34394 Msa1351540:CDS
CATCAGATACGGAAGATGAT+GGG 0.507228 tig0012323:+34944 Msa1351540:CDS
AGAAAAGTGGAAGGGGTGGT+TGG 0.512312 tig0012323:+34401 Msa1351540:CDS
TTGGTTGAGACACTAGGAAA+GGG 0.513190 tig0012323:+35620 Msa1351540:three_prime_UTR
CACTGTTGTAGTTGAGGGCA+TGG 0.514451 tig0012323:+34880 Msa1351540:CDS
AAAAGTGAACGGAGAGGATA+CGG 0.517227 tig0012323:+34694 Msa1351540:CDS
CTAAACGCTATGACTGGGCT+CGG 0.517397 tig0012323:+34075 Msa1351540:CDS
AGCACCACTGTTGTAGTTGA+GGG 0.518752 tig0012323:+34875 Msa1351540:CDS
ATCTAAATATAATCCAACCT+CGG 0.518807 tig0012323:-35165 None:intergenic
TGAAGAGCCGGTGGCCAAGA+AGG 0.518853 tig0012323:+33836 Msa1351540:CDS
CGATTCTATATTGATCCACC+TGG 0.519143 tig0012323:+34149 Msa1351540:CDS
TATTATTTGGTTGAGACACT+AGG 0.521419 tig0012323:+35614 Msa1351540:three_prime_UTR
AGGAAGAAAAGTGGAAGGGG+TGG 0.523374 tig0012323:+34397 Msa1351540:CDS
TCTAAATATAATCCAACCTC+GGG 0.523459 tig0012323:-35164 None:intergenic
GAGAGAGGAAGAAAAGTGGA+AGG 0.524603 tig0012323:+34392 Msa1351540:CDS
TTCTGAGAGAGGAAGAAAAG+TGG 0.528778 tig0012323:+34388 Msa1351540:CDS
GTTGAGGTTTCTTTAAGCAA+AGG 0.530209 tig0012323:+34518 Msa1351540:CDS
TATTCTGTGGAAGCAATATG+AGG 0.533607 tig0012323:-35296 None:intergenic
AGCATATGAGAAAGAGGCTG+AGG 0.533806 tig0012323:+35250 Msa1351540:CDS
AGAGAGGAAGAAAAGTGGAA+GGG 0.535330 tig0012323:+34393 Msa1351540:CDS
AGAATGAGTTCTACGATGAC+CGG 0.536800 tig0012323:-35486 None:intergenic
CACTGTGCCTACTGCACCCG+AGG 0.538197 tig0012323:+35148 Msa1351540:CDS
TTTCATTGACACCTCTTCAT+GGG 0.538326 tig0012323:-35228 None:intergenic
AGAAGTAAATTCTAAAACTG+TGG 0.542353 tig0012323:+34601 Msa1351540:CDS
CAGGTGGATCAATATAGAAT+CGG 0.544533 tig0012323:-34148 None:intergenic
GATAAAGGAGTTAGTGCTGT+TGG 0.545304 tig0012323:+34110 Msa1351540:CDS
AGTTCCTTCCTTATATTCTG+TGG 0.546489 tig0012323:-35309 None:intergenic
GCTTCATGCTTCATCAGATA+CGG 0.547048 tig0012323:+34933 Msa1351540:CDS
CCAAAGATTCGTATCTGTGA+GGG 0.547978 tig0012323:-34200 None:intergenic
TTAAGGCGATCAACGAAGCC+AGG 0.552578 tig0012323:-34167 None:intergenic
ATAACAAAACCCACTTCCAT+TGG 0.552929 tig0012323:-34720 None:intergenic
GAATATAAGGAAGGAACTGT+TGG 0.554434 tig0012323:+35314 Msa1351540:CDS
TTGTTATGGTGAGAAGGAGA+GGG 0.555405 tig0012323:+34736 Msa1351540:CDS
GAGACACTAGGAAAGGGAAA+TGG 0.555541 tig0012323:+35626 Msa1351540:three_prime_UTR
AAGCACCACTGTTGTAGTTG+AGG 0.555686 tig0012323:+34874 Msa1351540:CDS
TGGAGTTACAAAGGATGTTG+AGG 0.558784 tig0012323:+34502 Msa1351540:CDS
TCGTGCGTGATTCTGAAATG+AGG 0.559572 tig0012323:+33349 Msa1351540:five_prime_UTR
TTTCTTCCTCTCTCAGAACA+TGG 0.560829 tig0012323:-34383 None:intergenic
CATCATAAACAATTATATGC+AGG 0.561146 tig0012323:+35572 Msa1351540:three_prime_UTR
AATCCAACCTCGGGTGCAGT+AGG 0.564016 tig0012323:-35155 None:intergenic
CTGCGCATCCTTGACGGGGA+AGG 0.565379 tig0012323:+35377 Msa1351540:CDS
CGTGCGTGATTCTGAAATGA+GGG 0.567504 tig0012323:+33350 Msa1351540:five_prime_UTR
ACCACTACTTCTGATGATGA+AGG 0.569745 tig0012323:+33870 Msa1351540:CDS
GCTACTGAAAGTAACGGCGC+TGG 0.570669 tig0012323:-33810 None:intergenic
GATGAGGTTGCTGCTACAAA+TGG 0.573318 tig0012323:+34635 Msa1351540:CDS
TCCTTCATCATCAGAAGTAG+TGG 0.575739 tig0012323:-33871 None:intergenic
TAACATGTCTGAAATGTCAA+AGG 0.575874 tig0012323:-35529 None:intergenic
GGAGAGGATACGGCTGCCAA+TGG 0.576386 tig0012323:+34704 Msa1351540:CDS
TTTGGTTGAGACACTAGGAA+AGG 0.579600 tig0012323:+35619 Msa1351540:three_prime_UTR
ATGTCTGAAATGTCAAAGGA+AGG 0.594809 tig0012323:-35525 None:intergenic
CTTGGCCACCGGCTCTTCAG+CGG 0.594829 tig0012323:-33832 None:intergenic
TCGCGATAGAGAGACTGTAT+TGG 0.594900 tig0012323:+34322 Msa1351540:CDS
TTTGTTATGGTGAGAAGGAG+AGG 0.595584 tig0012323:+34735 Msa1351540:CDS
GCTGGAGATGATGAAGTTGA+CGG 0.600440 tig0012323:-33792 None:intergenic
GCTTTCTCGATAAGAGACTC+AGG 0.601494 tig0012323:-34998 None:intergenic
GAAGCTGATGATGTTGAGAA+TGG 0.601511 tig0012323:+34449 Msa1351540:CDS
ATCAGATACGGAAGATGATG+GGG 0.604058 tig0012323:+34945 Msa1351540:CDS
TCGTGACACCTTCCCCGTCA+AGG 0.607550 tig0012323:-35385 None:intergenic
CTTCAATAGTCTTTGCACCA+GGG 0.608022 tig0012323:-33992 None:intergenic
AACCAAATAATAGACACGAA+AGG 0.608678 tig0012323:-35603 None:intergenic
GGTAAGATACAAGCGCCGTA+AGG 0.609527 tig0012323:+33917 Msa1351540:CDS
TCTCTATCGCGATGACAACA+TGG 0.610304 tig0012323:-34311 None:intergenic
GAAGATGATGGGGCTTGCCG+TGG 0.611519 tig0012323:+34955 Msa1351540:CDS
TTTGTGAAGTGTGAGATTGT+GGG 0.614643 tig0012323:+34905 Msa1351540:CDS
GAGGTTGCTGCTACAAATGG+TGG 0.614830 tig0012323:+34638 Msa1351540:CDS
ACTTTCTAAACGCTATGACT+GGG 0.615231 tig0012323:+34070 Msa1351540:CDS
ACAATTTCTCATAATTGCCA+CGG 0.619993 tig0012323:-34972 None:intergenic
AGATCAGACGCAAGAGACAA+TGG 0.623847 tig0012323:-33389 None:intergenic
GTGGAAAGATACCCATGAAG+AGG 0.624853 tig0012323:+35217 Msa1351540:CDS
TGTTTGCCATGTTCTGAGAG+AGG 0.628824 tig0012323:+34377 Msa1351540:CDS
TGTGGTTTCTGATCAGGATG+AGG 0.630641 tig0012323:+34619 Msa1351540:CDS
AGTAGCCGCTGAAGAGCCGG+TGG 0.636551 tig0012323:+33827 Msa1351540:CDS
GCTTCCACAGAATATAAGGA+AGG 0.637022 tig0012323:+35305 Msa1351540:CDS
CATGCCCTCAACTACAACAG+TGG 0.639893 tig0012323:-34879 None:intergenic
GAAGGATGTACAACTGCTGA+AGG 0.641304 tig0012323:+33888 Msa1351540:CDS
GCTGTACCTGAACAGGATCG+TGG 0.643569 tig0012323:+34047 Msa1351540:CDS
ACCAAAGATTCGTATCTGTG+AGG 0.646180 tig0012323:-34201 None:intergenic
CCAAATAATAGACACGAAAG+GGG 0.652521 tig0012323:-35601 None:intergenic
AGATCTGCGCATCCTTGACG+GGG 0.657312 tig0012323:+35373 Msa1351540:CDS
ATACGGCTGCCAATGGAAGT+GGG 0.658422 tig0012323:+34711 Msa1351540:CDS
AGATTCGTATCTGTGAGGGA+AGG 0.664361 tig0012323:-34196 None:intergenic
AAACAATTATATGCAGGACA+TGG 0.667034 tig0012323:+35578 Msa1351540:three_prime_UTR
GAATCCATTAATGACAACGA+GGG 0.669982 tig0012323:+34563 Msa1351540:CDS
GAATAATTTAGGCATTCTCG+AGG 0.670398 tig0012323:+34667 Msa1351540:CDS
CAGACGCAAGAGACAATGGT+CGG 0.682629 tig0012323:-33385 None:intergenic
AGGCGATCAACGAAGCCAGG+TGG 0.685026 tig0012323:-34164 None:intergenic
TCAGCGGCTACTGAAAGTAA+CGG 0.694289 tig0012323:-33816 None:intergenic
GGTTGACTCTGGAGTTACAA+AGG 0.706513 tig0012323:+34493 Msa1351540:CDS
CACGACCAGAATAAAACCCG+AGG 0.709736 tig0012323:+34814 Msa1351540:CDS
CATGGATCAAGAGCAAACAC+AGG 0.714774 tig0012323:-34293 None:intergenic
AGAATCCATTAATGACAACG+AGG 0.722782 tig0012323:+34562 Msa1351540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGATATATAAATTAAGAG+AGG - tig0012323:33594-33613 None:intergenic 15.0%
!! CATTATTTCAAATATAAAGT+TGG - tig0012323:35064-35083 None:intergenic 15.0%
!! TTTGATATATAAATTAAGAG+AGG - tig0012323:33594-33613 None:intergenic 15.0%
!! CATTATTTCAAATATAAAGT+TGG - tig0012323:35064-35083 None:intergenic 15.0%
!!! CTAAGAATGGTATATATTTT+TGG - tig0012323:33624-33643 None:intergenic 20.0%
!! TTCTTATCGCTTATAAATAA+TGG + tig0012323:33752-33771 Msa1351540:exon 20.0%
!!! AATATTTTGAAGTGTTATGT+TGG + tig0012323:34770-34789 Msa1351540:CDS 20.0%
!!! ATATTTTGAAGTGTTATGTT+GGG + tig0012323:34771-34790 Msa1351540:CDS 20.0%
!!! CTAAGAATGGTATATATTTT+TGG - tig0012323:33624-33643 None:intergenic 20.0%
!! TTCTTATCGCTTATAAATAA+TGG + tig0012323:33752-33771 Msa1351540:exon 20.0%
!!! AATATTTTGAAGTGTTATGT+TGG + tig0012323:34770-34789 Msa1351540:CDS 20.0%
!!! ATATTTTGAAGTGTTATGTT+GGG + tig0012323:34771-34790 Msa1351540:CDS 20.0%
!!! TATACCATTCTTAGCTTTTA+TGG + tig0012323:33630-33649 Msa1351540:intron 25.0%
! AATATATCTAGCTATCGTTT+AGG + tig0012323:33715-33734 Msa1351540:intron 25.0%
! TTCATCAAACAAAAATGATG+TGG + tig0012323:34472-34491 Msa1351540:CDS 25.0%
! TTAGAATTTACTTCTTCAAC+TGG - tig0012323:34596-34615 None:intergenic 25.0%
!!! AGAAGTAAATTCTAAAACTG+TGG + tig0012323:34601-34620 Msa1351540:CDS 25.0%
! ATCTAAATATAATCCAACCT+CGG - tig0012323:35168-35187 None:intergenic 25.0%
! CATCATAAACAATTATATGC+AGG + tig0012323:35572-35591 Msa1351540:three_prime_UTR 25.0%
!!! TATACCATTCTTAGCTTTTA+TGG + tig0012323:33630-33649 Msa1351540:intron 25.0%
! AATATATCTAGCTATCGTTT+AGG + tig0012323:33715-33734 Msa1351540:intron 25.0%
! TTCATCAAACAAAAATGATG+TGG + tig0012323:34472-34491 Msa1351540:CDS 25.0%
! TTAGAATTTACTTCTTCAAC+TGG - tig0012323:34596-34615 None:intergenic 25.0%
!!! AGAAGTAAATTCTAAAACTG+TGG + tig0012323:34601-34620 Msa1351540:CDS 25.0%
! ATCTAAATATAATCCAACCT+CGG - tig0012323:35168-35187 None:intergenic 25.0%
! CATCATAAACAATTATATGC+AGG + tig0012323:35572-35591 Msa1351540:three_prime_UTR 25.0%
AGTACCATAAAAGCTAAGAA+TGG - tig0012323:33637-33656 None:intergenic 30.0%
!! TTCTTAGCTTTTATGGTACT+AGG + tig0012323:33637-33656 Msa1351540:intron 30.0%
!! TCTTAGCTTTTATGGTACTA+GGG + tig0012323:33638-33657 Msa1351540:intron 30.0%
!! AAGAATCTGTAGTGTTACTT+AGG + tig0012323:33673-33692 Msa1351540:intron 30.0%
! ATAATGAAACGTTTTGCAGA+AGG - tig0012323:34842-34861 None:intergenic 30.0%
ACAATTTCTCATAATTGCCA+CGG - tig0012323:34975-34994 None:intergenic 30.0%
TCTAAATATAATCCAACCTC+GGG - tig0012323:35167-35186 None:intergenic 30.0%
TTACTTCATATAACCAGAAG+TGG + tig0012323:35198-35217 Msa1351540:CDS 30.0%
! AATGAAAGCATATGAGAAAG+AGG + tig0012323:35244-35263 Msa1351540:CDS 30.0%
TATTGCTTCCACAGAATATA+AGG + tig0012323:35301-35320 Msa1351540:CDS 30.0%
! CAACCGAATGAAATTTTCTT+CGG + tig0012323:35462-35481 Msa1351540:exon 30.0%
! AACCGAATGAAATTTTCTTC+GGG + tig0012323:35463-35482 Msa1351540:exon 30.0%
! TAACATGTCTGAAATGTCAA+AGG - tig0012323:35532-35551 None:intergenic 30.0%
AAACAATTATATGCAGGACA+TGG + tig0012323:35578-35597 Msa1351540:three_prime_UTR 30.0%
ACCAAATAATAGACACGAAA+GGG - tig0012323:35605-35624 None:intergenic 30.0%
AACCAAATAATAGACACGAA+AGG - tig0012323:35606-35625 None:intergenic 30.0%
TATTATTTGGTTGAGACACT+AGG + tig0012323:35614-35633 Msa1351540:three_prime_UTR 30.0%
AGTACCATAAAAGCTAAGAA+TGG - tig0012323:33637-33656 None:intergenic 30.0%
!! TTCTTAGCTTTTATGGTACT+AGG + tig0012323:33637-33656 Msa1351540:intron 30.0%
!! TCTTAGCTTTTATGGTACTA+GGG + tig0012323:33638-33657 Msa1351540:intron 30.0%
!! AAGAATCTGTAGTGTTACTT+AGG + tig0012323:33673-33692 Msa1351540:intron 30.0%
! ATAATGAAACGTTTTGCAGA+AGG - tig0012323:34842-34861 None:intergenic 30.0%
ACAATTTCTCATAATTGCCA+CGG - tig0012323:34975-34994 None:intergenic 30.0%
TCTAAATATAATCCAACCTC+GGG - tig0012323:35167-35186 None:intergenic 30.0%
TTACTTCATATAACCAGAAG+TGG + tig0012323:35198-35217 Msa1351540:CDS 30.0%
! AATGAAAGCATATGAGAAAG+AGG + tig0012323:35244-35263 Msa1351540:CDS 30.0%
TATTGCTTCCACAGAATATA+AGG + tig0012323:35301-35320 Msa1351540:CDS 30.0%
! CAACCGAATGAAATTTTCTT+CGG + tig0012323:35462-35481 Msa1351540:exon 30.0%
! AACCGAATGAAATTTTCTTC+GGG + tig0012323:35463-35482 Msa1351540:exon 30.0%
! TAACATGTCTGAAATGTCAA+AGG - tig0012323:35532-35551 None:intergenic 30.0%
AAACAATTATATGCAGGACA+TGG + tig0012323:35578-35597 Msa1351540:three_prime_UTR 30.0%
ACCAAATAATAGACACGAAA+GGG - tig0012323:35605-35624 None:intergenic 30.0%
AACCAAATAATAGACACGAA+AGG - tig0012323:35606-35625 None:intergenic 30.0%
TATTATTTGGTTGAGACACT+AGG + tig0012323:35614-35633 Msa1351540:three_prime_UTR 30.0%
!! GATTCTGAAATGAGGGTTTA+AGG + tig0012323:33357-33376 Msa1351540:five_prime_UTR 35.0%
! CAGAAGAGTATGTGTATTAC+CGG - tig0012323:33419-33438 None:intergenic 35.0%
CAAAGAAAATCGCTACCTTA+CGG - tig0012323:33935-33954 None:intergenic 35.0%
! GAAGAAGCTTTGTATGTTTC+TGG + tig0012323:34023-34042 Msa1351540:CDS 35.0%
ACTTTCTAAACGCTATGACT+GGG + tig0012323:34070-34089 Msa1351540:CDS 35.0%
CAGGTGGATCAATATAGAAT+CGG - tig0012323:34151-34170 None:intergenic 35.0%
!! CTAAGAAGTTTTGTGATCGT+AGG + tig0012323:34252-34271 Msa1351540:CDS 35.0%
! AAAAATGATGTGGTTGACTC+TGG + tig0012323:34482-34501 Msa1351540:CDS 35.0%
GTTGAGGTTTCTTTAAGCAA+AGG + tig0012323:34518-34537 Msa1351540:CDS 35.0%
AGAATCCATTAATGACAACG+AGG + tig0012323:34562-34581 Msa1351540:CDS 35.0%
GAATCCATTAATGACAACGA+GGG + tig0012323:34563-34582 Msa1351540:CDS 35.0%
TAAAACTGTGGTTTCTGATC+AGG + tig0012323:34613-34632 Msa1351540:CDS 35.0%
GGTGGATCTGAGAATAATTT+AGG + tig0012323:34656-34675 Msa1351540:CDS 35.0%
GAATAATTTAGGCATTCTCG+AGG + tig0012323:34667-34686 Msa1351540:CDS 35.0%
ATAACAAAACCCACTTCCAT+TGG - tig0012323:34723-34742 None:intergenic 35.0%
!!! AATGGAAGTGGGTTTTGTTA+TGG + tig0012323:34722-34741 Msa1351540:CDS 35.0%
TTATTCTGGTCGTGAAGTTA+TGG - tig0012323:34808-34827 None:intergenic 35.0%
ATTTGTGAAGTGTGAGATTG+TGG + tig0012323:34904-34923 Msa1351540:CDS 35.0%
TTTGTGAAGTGTGAGATTGT+GGG + tig0012323:34905-34924 Msa1351540:CDS 35.0%
ATTGTTTCGTCCAAAATGCA+GGG + tig0012323:35115-35134 Msa1351540:intron 35.0%
TTTCATTGACACCTCTTCAT+GGG - tig0012323:35231-35250 None:intergenic 35.0%
TATTCTGTGGAAGCAATATG+AGG - tig0012323:35299-35318 None:intergenic 35.0%
AGTTCCTTCCTTATATTCTG+TGG - tig0012323:35312-35331 None:intergenic 35.0%
GAATATAAGGAAGGAACTGT+TGG + tig0012323:35314-35333 Msa1351540:CDS 35.0%
! ATGTCTGAAATGTCAAAGGA+AGG - tig0012323:35528-35547 None:intergenic 35.0%
CCAAATAATAGACACGAAAG+GGG - tig0012323:35604-35623 None:intergenic 35.0%
!! GATTCTGAAATGAGGGTTTA+AGG + tig0012323:33357-33376 Msa1351540:five_prime_UTR 35.0%
! CAGAAGAGTATGTGTATTAC+CGG - tig0012323:33419-33438 None:intergenic 35.0%
CAAAGAAAATCGCTACCTTA+CGG - tig0012323:33935-33954 None:intergenic 35.0%
! GAAGAAGCTTTGTATGTTTC+TGG + tig0012323:34023-34042 Msa1351540:CDS 35.0%
ACTTTCTAAACGCTATGACT+GGG + tig0012323:34070-34089 Msa1351540:CDS 35.0%
CAGGTGGATCAATATAGAAT+CGG - tig0012323:34151-34170 None:intergenic 35.0%
!! CTAAGAAGTTTTGTGATCGT+AGG + tig0012323:34252-34271 Msa1351540:CDS 35.0%
! AAAAATGATGTGGTTGACTC+TGG + tig0012323:34482-34501 Msa1351540:CDS 35.0%
GTTGAGGTTTCTTTAAGCAA+AGG + tig0012323:34518-34537 Msa1351540:CDS 35.0%
AGAATCCATTAATGACAACG+AGG + tig0012323:34562-34581 Msa1351540:CDS 35.0%
GAATCCATTAATGACAACGA+GGG + tig0012323:34563-34582 Msa1351540:CDS 35.0%
TAAAACTGTGGTTTCTGATC+AGG + tig0012323:34613-34632 Msa1351540:CDS 35.0%
GGTGGATCTGAGAATAATTT+AGG + tig0012323:34656-34675 Msa1351540:CDS 35.0%
GAATAATTTAGGCATTCTCG+AGG + tig0012323:34667-34686 Msa1351540:CDS 35.0%
ATAACAAAACCCACTTCCAT+TGG - tig0012323:34723-34742 None:intergenic 35.0%
!!! AATGGAAGTGGGTTTTGTTA+TGG + tig0012323:34722-34741 Msa1351540:CDS 35.0%
TTATTCTGGTCGTGAAGTTA+TGG - tig0012323:34808-34827 None:intergenic 35.0%
ATTTGTGAAGTGTGAGATTG+TGG + tig0012323:34904-34923 Msa1351540:CDS 35.0%
TTTGTGAAGTGTGAGATTGT+GGG + tig0012323:34905-34924 Msa1351540:CDS 35.0%
ATTGTTTCGTCCAAAATGCA+GGG + tig0012323:35115-35134 Msa1351540:intron 35.0%
TTTCATTGACACCTCTTCAT+GGG - tig0012323:35231-35250 None:intergenic 35.0%
TATTCTGTGGAAGCAATATG+AGG - tig0012323:35299-35318 None:intergenic 35.0%
AGTTCCTTCCTTATATTCTG+TGG - tig0012323:35312-35331 None:intergenic 35.0%
GAATATAAGGAAGGAACTGT+TGG + tig0012323:35314-35333 Msa1351540:CDS 35.0%
! ATGTCTGAAATGTCAAAGGA+AGG - tig0012323:35528-35547 None:intergenic 35.0%
CCAAATAATAGACACGAAAG+GGG - tig0012323:35604-35623 None:intergenic 35.0%
! CTAGCTATCGTTTAGGTTTG+TGG + tig0012323:33722-33741 Msa1351540:intron 40.0%
! ATCGTTTAGGTTTGTGGCAT+CGG + tig0012323:33728-33747 Msa1351540:intron 40.0%
GGTAGACATCTTAACCTTCT+TGG - tig0012323:33853-33872 None:intergenic 40.0%
! ACCACTACTTCTGATGATGA+AGG + tig0012323:33870-33889 Msa1351540:CDS 40.0%
TCCTTCATCATCAGAAGTAG+TGG - tig0012323:33874-33893 None:intergenic 40.0%
TACAACTGCTGAAGGAAGTA+AGG + tig0012323:33896-33915 Msa1351540:CDS 40.0%
! GCGATTTTCTTTGCTTACTG+CGG + tig0012323:33942-33961 Msa1351540:CDS 40.0%
CTTCAATAGTCTTTGCACCA+GGG - tig0012323:33995-34014 None:intergenic 40.0%
GACTTTCTAAACGCTATGAC+TGG + tig0012323:34069-34088 Msa1351540:CDS 40.0%
GATAAAGGAGTTAGTGCTGT+TGG + tig0012323:34110-34129 Msa1351540:CDS 40.0%
CGATTCTATATTGATCCACC+TGG + tig0012323:34149-34168 Msa1351540:CDS 40.0%
GTGAGGGAAGGTTTGAATTA+AGG - tig0012323:34187-34206 None:intergenic 40.0%
CCAAAGATTCGTATCTGTGA+GGG - tig0012323:34203-34222 None:intergenic 40.0%
ACCAAAGATTCGTATCTGTG+AGG - tig0012323:34204-34223 None:intergenic 40.0%
!! AGAAGTTTTGTGATCGTAGG+AGG + tig0012323:34255-34274 Msa1351540:CDS 40.0%
!! GAGACTGTATTGGCTAGTTT+AGG + tig0012323:34332-34351 Msa1351540:CDS 40.0%
TTTCTTCCTCTCTCAGAACA+TGG - tig0012323:34386-34405 None:intergenic 40.0%
! TTCTGAGAGAGGAAGAAAAG+TGG + tig0012323:34388-34407 Msa1351540:CDS 40.0%
AGAGAGGAAGAAAAGTGGAA+GGG + tig0012323:34393-34412 Msa1351540:CDS 40.0%
! GAAGCTGATGATGTTGAGAA+TGG + tig0012323:34449-34468 Msa1351540:CDS 40.0%
TGGAGTTACAAAGGATGTTG+AGG + tig0012323:34502-34521 Msa1351540:CDS 40.0%
CTTACCCTCGTTGTCATTAA+TGG - tig0012323:34570-34589 None:intergenic 40.0%
CATTAATGACAACGAGGGTA+AGG + tig0012323:34568-34587 Msa1351540:CDS 40.0%
CTCGAGGAAGAAAAAGTGAA+CGG + tig0012323:34683-34702 Msa1351540:CDS 40.0%
AAAAGTGAACGGAGAGGATA+CGG + tig0012323:34694-34713 Msa1351540:CDS 40.0%
!!! TGGGTTTTGTTATGGTGAGA+AGG + tig0012323:34730-34749 Msa1351540:CDS 40.0%
! TTTGTTATGGTGAGAAGGAG+AGG + tig0012323:34735-34754 Msa1351540:CDS 40.0%
TTGTTATGGTGAGAAGGAGA+GGG + tig0012323:34736-34755 Msa1351540:CDS 40.0%
GCTTCATGCTTCATCAGATA+CGG + tig0012323:34933-34952 Msa1351540:CDS 40.0%
TCATCAGATACGGAAGATGA+TGG + tig0012323:34943-34962 Msa1351540:CDS 40.0%
CATCAGATACGGAAGATGAT+GGG + tig0012323:34944-34963 Msa1351540:CDS 40.0%
ATCAGATACGGAAGATGATG+GGG + tig0012323:34945-34964 Msa1351540:CDS 40.0%
GATTGTTTCGTCCAAAATGC+AGG + tig0012323:35114-35133 Msa1351540:intron 40.0%
! ATGCTAACATCCCTGCATTT+TGG - tig0012323:35128-35147 None:intergenic 40.0%
CTTTCATTGACACCTCTTCA+TGG - tig0012323:35232-35251 None:intergenic 40.0%
GCTTCCACAGAATATAAGGA+AGG + tig0012323:35305-35324 Msa1351540:CDS 40.0%
GCAGATCTGGATAGTTTCTA+TGG - tig0012323:35361-35380 None:intergenic 40.0%
GGCCCGAAGAAAATTTCATT+CGG - tig0012323:35468-35487 None:intergenic 40.0%
! GAATGAAATTTTCTTCGGGC+CGG + tig0012323:35467-35486 Msa1351540:exon 40.0%
AGAATGAGTTCTACGATGAC+CGG - tig0012323:35489-35508 None:intergenic 40.0%
CCCCTTTCGTGTCTATTATT+TGG + tig0012323:35601-35620 Msa1351540:three_prime_UTR 40.0%
TTTGGTTGAGACACTAGGAA+AGG + tig0012323:35619-35638 Msa1351540:three_prime_UTR 40.0%
TTGGTTGAGACACTAGGAAA+GGG + tig0012323:35620-35639 Msa1351540:three_prime_UTR 40.0%
! CTAGCTATCGTTTAGGTTTG+TGG + tig0012323:33722-33741 Msa1351540:intron 40.0%
! ATCGTTTAGGTTTGTGGCAT+CGG + tig0012323:33728-33747 Msa1351540:intron 40.0%
GGTAGACATCTTAACCTTCT+TGG - tig0012323:33853-33872 None:intergenic 40.0%
! ACCACTACTTCTGATGATGA+AGG + tig0012323:33870-33889 Msa1351540:CDS 40.0%
TCCTTCATCATCAGAAGTAG+TGG - tig0012323:33874-33893 None:intergenic 40.0%
TACAACTGCTGAAGGAAGTA+AGG + tig0012323:33896-33915 Msa1351540:CDS 40.0%
! GCGATTTTCTTTGCTTACTG+CGG + tig0012323:33942-33961 Msa1351540:CDS 40.0%
CTTCAATAGTCTTTGCACCA+GGG - tig0012323:33995-34014 None:intergenic 40.0%
GACTTTCTAAACGCTATGAC+TGG + tig0012323:34069-34088 Msa1351540:CDS 40.0%
GATAAAGGAGTTAGTGCTGT+TGG + tig0012323:34110-34129 Msa1351540:CDS 40.0%
CGATTCTATATTGATCCACC+TGG + tig0012323:34149-34168 Msa1351540:CDS 40.0%
GTGAGGGAAGGTTTGAATTA+AGG - tig0012323:34187-34206 None:intergenic 40.0%
CCAAAGATTCGTATCTGTGA+GGG - tig0012323:34203-34222 None:intergenic 40.0%
ACCAAAGATTCGTATCTGTG+AGG - tig0012323:34204-34223 None:intergenic 40.0%
!! AGAAGTTTTGTGATCGTAGG+AGG + tig0012323:34255-34274 Msa1351540:CDS 40.0%
!! GAGACTGTATTGGCTAGTTT+AGG + tig0012323:34332-34351 Msa1351540:CDS 40.0%
TTTCTTCCTCTCTCAGAACA+TGG - tig0012323:34386-34405 None:intergenic 40.0%
! TTCTGAGAGAGGAAGAAAAG+TGG + tig0012323:34388-34407 Msa1351540:CDS 40.0%
AGAGAGGAAGAAAAGTGGAA+GGG + tig0012323:34393-34412 Msa1351540:CDS 40.0%
! GAAGCTGATGATGTTGAGAA+TGG + tig0012323:34449-34468 Msa1351540:CDS 40.0%
TGGAGTTACAAAGGATGTTG+AGG + tig0012323:34502-34521 Msa1351540:CDS 40.0%
CTTACCCTCGTTGTCATTAA+TGG - tig0012323:34570-34589 None:intergenic 40.0%
CATTAATGACAACGAGGGTA+AGG + tig0012323:34568-34587 Msa1351540:CDS 40.0%
CTCGAGGAAGAAAAAGTGAA+CGG + tig0012323:34683-34702 Msa1351540:CDS 40.0%
AAAAGTGAACGGAGAGGATA+CGG + tig0012323:34694-34713 Msa1351540:CDS 40.0%
!!! TGGGTTTTGTTATGGTGAGA+AGG + tig0012323:34730-34749 Msa1351540:CDS 40.0%
! TTTGTTATGGTGAGAAGGAG+AGG + tig0012323:34735-34754 Msa1351540:CDS 40.0%
TTGTTATGGTGAGAAGGAGA+GGG + tig0012323:34736-34755 Msa1351540:CDS 40.0%
GCTTCATGCTTCATCAGATA+CGG + tig0012323:34933-34952 Msa1351540:CDS 40.0%
TCATCAGATACGGAAGATGA+TGG + tig0012323:34943-34962 Msa1351540:CDS 40.0%
CATCAGATACGGAAGATGAT+GGG + tig0012323:34944-34963 Msa1351540:CDS 40.0%
ATCAGATACGGAAGATGATG+GGG + tig0012323:34945-34964 Msa1351540:CDS 40.0%
GATTGTTTCGTCCAAAATGC+AGG + tig0012323:35114-35133 Msa1351540:intron 40.0%
! ATGCTAACATCCCTGCATTT+TGG - tig0012323:35128-35147 None:intergenic 40.0%
CTTTCATTGACACCTCTTCA+TGG - tig0012323:35232-35251 None:intergenic 40.0%
GCTTCCACAGAATATAAGGA+AGG + tig0012323:35305-35324 Msa1351540:CDS 40.0%
GCAGATCTGGATAGTTTCTA+TGG - tig0012323:35361-35380 None:intergenic 40.0%
GGCCCGAAGAAAATTTCATT+CGG - tig0012323:35468-35487 None:intergenic 40.0%
! GAATGAAATTTTCTTCGGGC+CGG + tig0012323:35467-35486 Msa1351540:exon 40.0%
AGAATGAGTTCTACGATGAC+CGG - tig0012323:35489-35508 None:intergenic 40.0%
CCCCTTTCGTGTCTATTATT+TGG + tig0012323:35601-35620 Msa1351540:three_prime_UTR 40.0%
TTTGGTTGAGACACTAGGAA+AGG + tig0012323:35619-35638 Msa1351540:three_prime_UTR 40.0%
TTGGTTGAGACACTAGGAAA+GGG + tig0012323:35620-35639 Msa1351540:three_prime_UTR 40.0%
!! TCGTGCGTGATTCTGAAATG+AGG + tig0012323:33349-33368 Msa1351540:five_prime_UTR 45.0%
!! CGTGCGTGATTCTGAAATGA+GGG + tig0012323:33350-33369 Msa1351540:five_prime_UTR 45.0%
AGATCAGACGCAAGAGACAA+TGG - tig0012323:33392-33411 None:intergenic 45.0%
TCTTGCGTCTGATCTACTTC+CGG + tig0012323:33397-33416 Msa1351540:five_prime_UTR 45.0%
GCTGGAGATGATGAAGTTGA+CGG - tig0012323:33795-33814 None:intergenic 45.0%
TCAGCGGCTACTGAAAGTAA+CGG - tig0012323:33819-33838 None:intergenic 45.0%
ATCTTAACCTTCTTGGCCAC+CGG - tig0012323:33846-33865 None:intergenic 45.0%
GAAGGATGTACAACTGCTGA+AGG + tig0012323:33888-33907 Msa1351540:CDS 45.0%
TTCTTTGCTTACTGCGGTGT+TGG + tig0012323:33948-33967 Msa1351540:CDS 45.0%
!! TTACTGCGGTGTTGGTTATC+AGG + tig0012323:33956-33975 Msa1351540:CDS 45.0%
!! TACTGCGGTGTTGGTTATCA+GGG + tig0012323:33957-33976 Msa1351540:CDS 45.0%
CCTTCAATAGTCTTTGCACC+AGG - tig0012323:33996-34015 None:intergenic 45.0%
CCTGGTGCAAAGACTATTGA+AGG + tig0012323:33993-34012 Msa1351540:CDS 45.0%
CGGTCAGCTAGAACTGATAA+AGG + tig0012323:34095-34114 Msa1351540:CDS 45.0%
! TGCTGTTGGTCAGGTTGTTT+CGG + tig0012323:34124-34143 Msa1351540:CDS 45.0%
AGATTCGTATCTGTGAGGGA+AGG - tig0012323:34199-34218 None:intergenic 45.0%
CCCTCACAGATACGAATCTT+TGG + tig0012323:34200-34219 Msa1351540:CDS 45.0%
CATGGATCAAGAGCAAACAC+AGG - tig0012323:34296-34315 None:intergenic 45.0%
TCTCTATCGCGATGACAACA+TGG - tig0012323:34314-34333 None:intergenic 45.0%
TCGCGATAGAGAGACTGTAT+TGG + tig0012323:34322-34341 Msa1351540:CDS 45.0%
!! TGTTTGCCATGTTCTGAGAG+AGG + tig0012323:34377-34396 Msa1351540:CDS 45.0%
GAGAGAGGAAGAAAAGTGGA+AGG + tig0012323:34392-34411 Msa1351540:CDS 45.0%
GAGAGGAAGAAAAGTGGAAG+GGG + tig0012323:34394-34413 Msa1351540:CDS 45.0%
!! GGTTGACTCTGGAGTTACAA+AGG + tig0012323:34493-34512 Msa1351540:CDS 45.0%
TGTGGTTTCTGATCAGGATG+AGG + tig0012323:34619-34638 Msa1351540:CDS 45.0%
GATGAGGTTGCTGCTACAAA+TGG + tig0012323:34635-34654 Msa1351540:CDS 45.0%
GGAAGAAAAAGTGAACGGAG+AGG + tig0012323:34688-34707 Msa1351540:CDS 45.0%
!!! AGGATCCTCGGGTTTTATTC+TGG - tig0012323:34822-34841 None:intergenic 45.0%
! ACGTTTTGCAGAAGGATCCT+CGG - tig0012323:34834-34853 None:intergenic 45.0%
AAGCACCACTGTTGTAGTTG+AGG + tig0012323:34874-34893 Msa1351540:CDS 45.0%
AGCACCACTGTTGTAGTTGA+GGG + tig0012323:34875-34894 Msa1351540:CDS 45.0%
GCTTTCTCGATAAGAGACTC+AGG - tig0012323:35001-35020 None:intergenic 45.0%
CATGGGTATCTTTCCACTTC+TGG - tig0012323:35214-35233 None:intergenic 45.0%
GTGGAAAGATACCCATGAAG+AGG + tig0012323:35217-35236 Msa1351540:CDS 45.0%
AGCATATGAGAAAGAGGCTG+AGG + tig0012323:35250-35269 Msa1351540:CDS 45.0%
! AGGAAGGAACTGTTGGTCTA+TGG + tig0012323:35321-35340 Msa1351540:CDS 45.0%
GAGACACTAGGAAAGGGAAA+TGG + tig0012323:35626-35645 Msa1351540:three_prime_UTR 45.0%
!! TCGTGCGTGATTCTGAAATG+AGG + tig0012323:33349-33368 Msa1351540:five_prime_UTR 45.0%
!! CGTGCGTGATTCTGAAATGA+GGG + tig0012323:33350-33369 Msa1351540:five_prime_UTR 45.0%
AGATCAGACGCAAGAGACAA+TGG - tig0012323:33392-33411 None:intergenic 45.0%
TCTTGCGTCTGATCTACTTC+CGG + tig0012323:33397-33416 Msa1351540:five_prime_UTR 45.0%
GCTGGAGATGATGAAGTTGA+CGG - tig0012323:33795-33814 None:intergenic 45.0%
TCAGCGGCTACTGAAAGTAA+CGG - tig0012323:33819-33838 None:intergenic 45.0%
ATCTTAACCTTCTTGGCCAC+CGG - tig0012323:33846-33865 None:intergenic 45.0%
GAAGGATGTACAACTGCTGA+AGG + tig0012323:33888-33907 Msa1351540:CDS 45.0%
TTCTTTGCTTACTGCGGTGT+TGG + tig0012323:33948-33967 Msa1351540:CDS 45.0%
!! TTACTGCGGTGTTGGTTATC+AGG + tig0012323:33956-33975 Msa1351540:CDS 45.0%
!! TACTGCGGTGTTGGTTATCA+GGG + tig0012323:33957-33976 Msa1351540:CDS 45.0%
CCTTCAATAGTCTTTGCACC+AGG - tig0012323:33996-34015 None:intergenic 45.0%
CCTGGTGCAAAGACTATTGA+AGG + tig0012323:33993-34012 Msa1351540:CDS 45.0%
CGGTCAGCTAGAACTGATAA+AGG + tig0012323:34095-34114 Msa1351540:CDS 45.0%
! TGCTGTTGGTCAGGTTGTTT+CGG + tig0012323:34124-34143 Msa1351540:CDS 45.0%
AGATTCGTATCTGTGAGGGA+AGG - tig0012323:34199-34218 None:intergenic 45.0%
CCCTCACAGATACGAATCTT+TGG + tig0012323:34200-34219 Msa1351540:CDS 45.0%
CATGGATCAAGAGCAAACAC+AGG - tig0012323:34296-34315 None:intergenic 45.0%
TCTCTATCGCGATGACAACA+TGG - tig0012323:34314-34333 None:intergenic 45.0%
TCGCGATAGAGAGACTGTAT+TGG + tig0012323:34322-34341 Msa1351540:CDS 45.0%
!! TGTTTGCCATGTTCTGAGAG+AGG + tig0012323:34377-34396 Msa1351540:CDS 45.0%
GAGAGAGGAAGAAAAGTGGA+AGG + tig0012323:34392-34411 Msa1351540:CDS 45.0%
GAGAGGAAGAAAAGTGGAAG+GGG + tig0012323:34394-34413 Msa1351540:CDS 45.0%
!! GGTTGACTCTGGAGTTACAA+AGG + tig0012323:34493-34512 Msa1351540:CDS 45.0%
TGTGGTTTCTGATCAGGATG+AGG + tig0012323:34619-34638 Msa1351540:CDS 45.0%
GATGAGGTTGCTGCTACAAA+TGG + tig0012323:34635-34654 Msa1351540:CDS 45.0%
GGAAGAAAAAGTGAACGGAG+AGG + tig0012323:34688-34707 Msa1351540:CDS 45.0%
!!! AGGATCCTCGGGTTTTATTC+TGG - tig0012323:34822-34841 None:intergenic 45.0%
! ACGTTTTGCAGAAGGATCCT+CGG - tig0012323:34834-34853 None:intergenic 45.0%
AAGCACCACTGTTGTAGTTG+AGG + tig0012323:34874-34893 Msa1351540:CDS 45.0%
AGCACCACTGTTGTAGTTGA+GGG + tig0012323:34875-34894 Msa1351540:CDS 45.0%
GCTTTCTCGATAAGAGACTC+AGG - tig0012323:35001-35020 None:intergenic 45.0%
CATGGGTATCTTTCCACTTC+TGG - tig0012323:35214-35233 None:intergenic 45.0%
GTGGAAAGATACCCATGAAG+AGG + tig0012323:35217-35236 Msa1351540:CDS 45.0%
AGCATATGAGAAAGAGGCTG+AGG + tig0012323:35250-35269 Msa1351540:CDS 45.0%
! AGGAAGGAACTGTTGGTCTA+TGG + tig0012323:35321-35340 Msa1351540:CDS 45.0%
GAGACACTAGGAAAGGGAAA+TGG + tig0012323:35626-35645 Msa1351540:three_prime_UTR 45.0%
CAGACGCAAGAGACAATGGT+CGG - tig0012323:33388-33407 None:intergenic 50.0%
! GGTAAGATACAAGCGCCGTA+AGG + tig0012323:33917-33936 Msa1351540:CDS 50.0%
CAGGGTATGCAGAAAAACCC+TGG + tig0012323:33975-33994 Msa1351540:CDS 50.0%
!! TTCTGGAGCTGTACCTGAAC+AGG + tig0012323:34040-34059 Msa1351540:CDS 50.0%
GAAAGTCCACGATCCTGTTC+AGG - tig0012323:34056-34075 None:intergenic 50.0%
CTAAACGCTATGACTGGGCT+CGG + tig0012323:34075-34094 Msa1351540:CDS 50.0%
! AGGAGTTAGTGCTGTTGGTC+AGG + tig0012323:34115-34134 Msa1351540:CDS 50.0%
! GCTGTTGGTCAGGTTGTTTC+GGG + tig0012323:34125-34144 Msa1351540:CDS 50.0%
TTAAGGCGATCAACGAAGCC+AGG - tig0012323:34170-34189 None:intergenic 50.0%
AGGAAGAAAAGTGGAAGGGG+TGG + tig0012323:34397-34416 Msa1351540:CDS 50.0%
AGAAAAGTGGAAGGGGTGGT+TGG + tig0012323:34401-34420 Msa1351540:CDS 50.0%
GAGGTTGCTGCTACAAATGG+TGG + tig0012323:34638-34657 Msa1351540:CDS 50.0%
ATACGGCTGCCAATGGAAGT+GGG + tig0012323:34711-34730 Msa1351540:CDS 50.0%
CACGACCAGAATAAAACCCG+AGG + tig0012323:34814-34833 Msa1351540:CDS 50.0%
! CGTTTTGCAGAAGGATCCTC+GGG - tig0012323:34833-34852 None:intergenic 50.0%
CATGCCCTCAACTACAACAG+TGG - tig0012323:34882-34901 None:intergenic 50.0%
CACTGTTGTAGTTGAGGGCA+TGG + tig0012323:34880-34899 Msa1351540:CDS 50.0%
CAGACGCAAGAGACAATGGT+CGG - tig0012323:33388-33407 None:intergenic 50.0%
! GGTAAGATACAAGCGCCGTA+AGG + tig0012323:33917-33936 Msa1351540:CDS 50.0%
CAGGGTATGCAGAAAAACCC+TGG + tig0012323:33975-33994 Msa1351540:CDS 50.0%
!! TTCTGGAGCTGTACCTGAAC+AGG + tig0012323:34040-34059 Msa1351540:CDS 50.0%
GAAAGTCCACGATCCTGTTC+AGG - tig0012323:34056-34075 None:intergenic 50.0%
CTAAACGCTATGACTGGGCT+CGG + tig0012323:34075-34094 Msa1351540:CDS 50.0%
! AGGAGTTAGTGCTGTTGGTC+AGG + tig0012323:34115-34134 Msa1351540:CDS 50.0%
! GCTGTTGGTCAGGTTGTTTC+GGG + tig0012323:34125-34144 Msa1351540:CDS 50.0%
TTAAGGCGATCAACGAAGCC+AGG - tig0012323:34170-34189 None:intergenic 50.0%
AGGAAGAAAAGTGGAAGGGG+TGG + tig0012323:34397-34416 Msa1351540:CDS 50.0%
AGAAAAGTGGAAGGGGTGGT+TGG + tig0012323:34401-34420 Msa1351540:CDS 50.0%
GAGGTTGCTGCTACAAATGG+TGG + tig0012323:34638-34657 Msa1351540:CDS 50.0%
ATACGGCTGCCAATGGAAGT+GGG + tig0012323:34711-34730 Msa1351540:CDS 50.0%
CACGACCAGAATAAAACCCG+AGG + tig0012323:34814-34833 Msa1351540:CDS 50.0%
! CGTTTTGCAGAAGGATCCTC+GGG - tig0012323:34833-34852 None:intergenic 50.0%
CATGCCCTCAACTACAACAG+TGG - tig0012323:34882-34901 None:intergenic 50.0%
CACTGTTGTAGTTGAGGGCA+TGG + tig0012323:34880-34899 Msa1351540:CDS 50.0%
GCTACTGAAAGTAACGGCGC+TGG - tig0012323:33813-33832 None:intergenic 55.0%
TTCAGTAGCCGCTGAAGAGC+CGG + tig0012323:33824-33843 Msa1351540:CDS 55.0%
GCTGTACCTGAACAGGATCG+TGG + tig0012323:34047-34066 Msa1351540:CDS 55.0%
GATACGGCTGCCAATGGAAG+TGG + tig0012323:34710-34729 Msa1351540:CDS 55.0%
AATCCAACCTCGGGTGCAGT+AGG - tig0012323:35158-35177 None:intergenic 55.0%
CCAGATCTGCGCATCCTTGA+CGG + tig0012323:35371-35390 Msa1351540:CDS 55.0%
CAGATCTGCGCATCCTTGAC+GGG + tig0012323:35372-35391 Msa1351540:CDS 55.0%
AGATCTGCGCATCCTTGACG+GGG + tig0012323:35373-35392 Msa1351540:CDS 55.0%
GCTACTGAAAGTAACGGCGC+TGG - tig0012323:33813-33832 None:intergenic 55.0%
TTCAGTAGCCGCTGAAGAGC+CGG + tig0012323:33824-33843 Msa1351540:CDS 55.0%
GCTGTACCTGAACAGGATCG+TGG + tig0012323:34047-34066 Msa1351540:CDS 55.0%
GATACGGCTGCCAATGGAAG+TGG + tig0012323:34710-34729 Msa1351540:CDS 55.0%
AATCCAACCTCGGGTGCAGT+AGG - tig0012323:35158-35177 None:intergenic 55.0%
CCAGATCTGCGCATCCTTGA+CGG + tig0012323:35371-35390 Msa1351540:CDS 55.0%
CAGATCTGCGCATCCTTGAC+GGG + tig0012323:35372-35391 Msa1351540:CDS 55.0%
AGATCTGCGCATCCTTGACG+GGG + tig0012323:35373-35392 Msa1351540:CDS 55.0%
TGAAGAGCCGGTGGCCAAGA+AGG + tig0012323:33836-33855 Msa1351540:CDS 60.0%
AGGCGATCAACGAAGCCAGG+TGG - tig0012323:34167-34186 None:intergenic 60.0%
GGAGAGGATACGGCTGCCAA+TGG + tig0012323:34704-34723 Msa1351540:CDS 60.0%
!! GAAGATGATGGGGCTTGCCG+TGG + tig0012323:34955-34974 Msa1351540:CDS 60.0%
CCGTCAAGGATGCGCAGATC+TGG - tig0012323:35374-35393 None:intergenic 60.0%
TCGTGACACCTTCCCCGTCA+AGG - tig0012323:35388-35407 None:intergenic 60.0%
TGAAGAGCCGGTGGCCAAGA+AGG + tig0012323:33836-33855 Msa1351540:CDS 60.0%
AGGCGATCAACGAAGCCAGG+TGG - tig0012323:34167-34186 None:intergenic 60.0%
GGAGAGGATACGGCTGCCAA+TGG + tig0012323:34704-34723 Msa1351540:CDS 60.0%
!! GAAGATGATGGGGCTTGCCG+TGG + tig0012323:34955-34974 Msa1351540:CDS 60.0%
CCGTCAAGGATGCGCAGATC+TGG - tig0012323:35374-35393 None:intergenic 60.0%
TCGTGACACCTTCCCCGTCA+AGG - tig0012323:35388-35407 None:intergenic 60.0%
AGTAGCCGCTGAAGAGCCGG+TGG + tig0012323:33827-33846 Msa1351540:CDS 65.0%
!! CTTGGCCACCGGCTCTTCAG+CGG - tig0012323:33835-33854 None:intergenic 65.0%
CACTGTGCCTACTGCACCCG+AGG + tig0012323:35148-35167 Msa1351540:CDS 65.0%
GTGCCTACTGCACCCGAGGT+TGG + tig0012323:35152-35171 Msa1351540:CDS 65.0%
CTGCGCATCCTTGACGGGGA+AGG + tig0012323:35377-35396 Msa1351540:CDS 65.0%
AGTAGCCGCTGAAGAGCCGG+TGG + tig0012323:33827-33846 Msa1351540:CDS 65.0%
!! CTTGGCCACCGGCTCTTCAG+CGG - tig0012323:33835-33854 None:intergenic 65.0%
CACTGTGCCTACTGCACCCG+AGG + tig0012323:35148-35167 Msa1351540:CDS 65.0%
GTGCCTACTGCACCCGAGGT+TGG + tig0012323:35152-35171 Msa1351540:CDS 65.0%
CTGCGCATCCTTGACGGGGA+AGG + tig0012323:35377-35396 Msa1351540:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0012323 gene 33347 35668 33347 ID=Msa1351540;Name=Msa1351540
tig0012323 mRNA 33347 35668 33347 ID=Msa1351540-mRNA-1;Parent=Msa1351540;Name=Msa1351540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=106|1|1|1|0.5|0.33|3|196|531
tig0012323 exon 33347 33418 33347 ID=Msa1351540-mRNA-1:exon:7755;Parent=Msa1351540-mRNA-1
tig0012323 exon 33737 35029 33737 ID=Msa1351540-mRNA-1:exon:7756;Parent=Msa1351540-mRNA-1
tig0012323 exon 35136 35668 35136 ID=Msa1351540-mRNA-1:exon:7757;Parent=Msa1351540-mRNA-1
tig0012323 five_prime_UTR 33347 33418 33347 ID=Msa1351540-mRNA-1:five_prime_utr;Parent=Msa1351540-mRNA-1
tig0012323 five_prime_UTR 33737 33770 33737 ID=Msa1351540-mRNA-1:five_prime_utr;Parent=Msa1351540-mRNA-1
tig0012323 CDS 33771 35029 33771 ID=Msa1351540-mRNA-1:cds;Parent=Msa1351540-mRNA-1
tig0012323 CDS 35136 35472 35136 ID=Msa1351540-mRNA-1:cds;Parent=Msa1351540-mRNA-1
tig0012323 three_prime_UTR 35473 35668 35473 ID=Msa1351540-mRNA-1:three_prime_utr;Parent=Msa1351540-mRNA-1
Gene Sequence

>Msa1351540

ATGGAAAACTCAGATAAAACTCCGTCAACTTCATCATCTCCAGCGCCGTTACTTTCAGTAGCCGCTGAAGAGCCGGTGGCCAAGAAGGTTAAGATGTCTACCACTACTTCTGATGATGAAGGATGTACAACTGCTGAAGGAAGTAAGGTAAGATACAAGCGCCGTAAGGTAGCGATTTTCTTTGCTTACTGCGGTGTTGGTTATCAGGGTATGCAGAAAAACCCTGGTGCAAAGACTATTGAAGGTGAACTAGAAGAAGCTTTGTATGTTTCTGGAGCTGTACCTGAACAGGATCGTGGACTTTCTAAACGCTATGACTGGGCTCGGTCAGCTAGAACTGATAAAGGAGTTAGTGCTGTTGGTCAGGTTGTTTCGGGCCGATTCTATATTGATCCACCTGGCTTCGTTGATCGCCTTAATTCAAACCTTCCCTCACAGATACGAATCTTTGGTTTTAAGCGAGTGACTGCTTCTTTTAGTGCTAAGAAGTTTTGTGATCGTAGGAGGTATGTTTATCTCATTCCTGTGTTTGCTCTTGATCCATGTTGTCATCGCGATAGAGAGACTGTATTGGCTAGTTTAGGTTCTGAAAATGAGCTTGTTAAGTGTTTGCCATGTTCTGAGAGAGGAAGAAAAGTGGAAGGGGTGGTTGGTAATAGTAAGCGCAATCTTGAGCTAGAAGCTGATGATGTTGAGAATGGTTCATCAAACAAAAATGATGTGGTTGACTCTGGAGTTACAAAGGATGTTGAGGTTTCTTTAAGCAAAGGTGATGCTAATCATTTAAATAAAGAATCCATTAATGACAACGAGGGTAAGGTTCCAGTTGAAGAAGTAAATTCTAAAACTGTGGTTTCTGATCAGGATGAGGTTGCTGCTACAAATGGTGGATCTGAGAATAATTTAGGCATTCTCGAGGAAGAAAAAGTGAACGGAGAGGATACGGCTGCCAATGGAAGTGGGTTTTGTTATGGTGAGAAGGAGAGGGACAGATTTAACAATATTTTGAAGTGTTATGTTGGGACTCATAACTTCCATAACTTCACGACCAGAATAAAACCCGAGGATCCTTCTGCAAAACGTTTCATTATTTCATTTGACGCAAGCACCACTGTTGTAGTTGAGGGCATGGAATTTGTGAAGTGTGAGATTGTGGGACAGAGCTTCATGCTTCATCAGATACGGAAGATGATGGGGCTTGCCGTGGCAATTATGAGAAATTGTGCACCTGAGTCTCTTATCGAGAAAGCTTTGCAGAAGGATGTTAGCATCACTGTGCCTACTGCACCCGAGGTTGGATTATATTTAGATGAGTGCTTCTTTACTTCATATAACCAGAAGTGGAAAGATACCCATGAAGAGGTGTCAATGAAAGCATATGAGAAAGAGGCTGAGGATTTCAAAATGCAGTACATATATCCTCATATTGCTTCCACAGAATATAAGGAAGGAACTGTTGGTCTATGGTTGCATTCTTTGAACCATAGAAACTATCCAGATCTGCGCATCCTTGACGGGGAAGGTGTCACGAATGACAAGAAAGCTGAAATTGACATGAATGACAAGAAAACTGAAATTGAAGTTGCAACCGAATGA

Protein sequence

>Msa1351540

MENSDKTPSTSSSPAPLLSVAAEEPVAKKVKMSTTTSDDEGCTTAEGSKVRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVEGVVGNSKRNLELEADDVENGSSNKNDVVDSGVTKDVEVSLSKGDANHLNKESINDNEGKVPVEEVNSKTVVSDQDEVAATNGGSENNLGILEEEKVNGEDTAANGSGFCYGEKERDRFNNILKCYVGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYNQKWKDTHEEVSMKAYEKEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRILDGEGVTNDKKAEIDMNDKKTEIEVATE*