AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0176750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0176750 MtrunA17_Chr1g0199321 98.571 630 9 0 3 632 1 630 0.0 1268
Msa0176750 MtrunA17_Chr4g0031431 54.808 624 268 2 14 623 6 629 0.0 659
Msa0176750 MtrunA17_Chr7g0237931 48.479 559 267 6 68 620 62 605 5.25e-164 483
Msa0176750 MtrunA17_Chr4g0044411 45.114 614 299 7 40 624 46 650 9.31e-164 483
Msa0176750 MtrunA17_Chr7g0248251 42.351 621 346 5 11 624 29 644 5.95e-156 463
Msa0176750 MtrunA17_Chr5g0437411 35.575 669 349 11 23 622 30 685 2.27e-123 381
Msa0176750 MtrunA17_Chr2g0284461 35.987 628 358 13 35 624 56 677 1.59e-98 317
Msa0176750 MtrunA17_Chr7g0234671 40.050 397 211 10 237 623 73 452 3.71e-84 271
Msa0176750 MtrunA17_Chr7g0275081 39.344 427 234 11 209 622 38 452 1.46e-80 262
Msa0176750 MtrunA17_Chr3g0106931 56.089 271 118 1 347 617 553 822 2.40e-79 268
Msa0176750 MtrunA17_Chr3g0106931 63.291 79 28 1 246 323 229 307 4.44e-27 117
Msa0176750 MtrunA17_Chr4g0059201 32.072 608 381 13 42 621 100 703 2.46e-78 263
Msa0176750 MtrunA17_Chr4g0013091 32.025 637 393 17 17 622 71 698 2.05e-75 255
Msa0176750 MtrunA17_Chr2g0290151 47.163 282 149 0 347 628 175 456 5.34e-71 236
Msa0176750 MtrunA17_Chr3g0134761 45.714 280 148 1 347 622 51 330 5.27e-69 228
Msa0176750 MtrunA17_Chr1g0189811 38.875 391 223 8 244 625 58 441 3.70e-68 229
Msa0176750 MtrunA17_Chr1g0152561 43.841 276 155 0 347 622 61 336 7.21e-68 224
Msa0176750 MtrunA17_Chr7g0261371 48.718 273 139 1 345 617 512 783 3.19e-66 231
Msa0176750 MtrunA17_Chr7g0261371 44.048 168 75 6 164 324 161 316 1.47e-27 118
Msa0176750 MtrunA17_Chr1g0183781 48.339 271 139 1 347 617 440 709 5.63e-66 229
Msa0176750 MtrunA17_Chr1g0183781 29.355 310 194 7 17 316 14 308 5.69e-25 110
Msa0176750 MtrunA17_Chr1g0198984 90.179 112 11 0 262 373 1 112 1.25e-65 210
Msa0176750 MtrunA17_Chr3g0117851 27.375 621 371 14 43 629 56 630 8.42e-59 208
Msa0176750 MtrunA17_Chr5g0413681 29.870 616 387 14 42 621 59 665 1.61e-58 208
Msa0176750 MtrunA17_Chr3g0122721 29.493 434 243 10 247 621 278 707 1.75e-49 184
Msa0176750 MtrunA17_Chr1g0199031 68.800 125 17 2 423 542 17 124 5.11e-44 153
Msa0176750 MtrunA17_Chr8g0377151 29.128 436 250 10 250 628 283 716 7.59e-44 167
Msa0176750 MtrunA17_Chr2g0280671 31.053 380 236 9 251 621 17 379 1.57e-42 157
Msa0176750 MtrunA17_Chr1g0199011 87.500 80 10 0 134 213 52 131 6.05e-41 145
Msa0176750 MtrunA17_Chr3g0118001 36.462 277 171 2 348 621 212 486 1.03e-40 155
Msa0176750 MtrunA17_Chr4g0044631 29.648 398 256 11 249 632 14 401 5.42e-34 134
Msa0176750 MtrunA17_Chr4g0048811 29.243 383 194 11 249 621 5 320 2.48e-31 124
Msa0176750 MtrunA17_Chr8g0373031 24.550 444 270 10 250 630 276 717 3.32e-31 129
Msa0176750 MtrunA17_Chr5g0400971 27.300 337 224 6 249 579 67 388 5.75e-31 126
Msa0176750 MtrunA17_Chr5g0429231 35.231 281 175 5 347 621 34 313 2.72e-30 122
Msa0176750 MtrunA17_Chr3g0110121 26.301 346 225 8 249 575 36 370 5.08e-29 120
Msa0176750 MtrunA17_Chr6g0451581 31.746 252 167 2 369 617 260 509 9.93e-29 120
Msa0176750 MtrunA17_Chr1g0152291 27.701 361 232 9 249 600 45 385 6.72e-28 117
Msa0176750 MtrunA17_Chr1g0199021 84.211 57 9 0 225 281 1 57 8.28e-27 103
Msa0176750 MtrunA17_Chr2g0322021 32.143 308 188 9 249 544 6 304 9.24e-27 113
Msa0176750 MtrunA17_Chr3g0137061 31.293 294 188 6 345 626 108 399 2.01e-26 113
Msa0176750 MtrunA17_Chr3g0129811 27.151 372 231 11 249 598 83 436 6.26e-26 111
Msa0176750 MtrunA17_Chr7g0267501 30.034 293 175 9 249 519 8 292 6.39e-26 110
Msa0176750 MtrunA17_Chr8g0384041 27.586 377 225 13 249 598 10 365 6.70e-26 110
Msa0176750 MtrunA17_Chr5g0420471 27.336 428 241 15 248 629 24 427 9.71e-26 110
Msa0176750 MtrunA17_Chr1g0177281 29.653 317 159 12 253 521 11 311 3.01e-25 108
Msa0176750 MtrunA17_Chr1g0149941 31.206 282 180 6 357 626 184 463 3.19e-25 110
Msa0176750 MtrunA17_Chr1g0198971 90.385 52 5 0 134 185 52 103 3.55e-25 100
Msa0176750 MtrunA17_Chr1g0177261 29.245 318 161 12 253 522 11 312 3.87e-25 108
Msa0176750 MtrunA17_Chr6g0479261 27.251 411 259 13 248 627 24 425 5.81e-25 108
Msa0176750 MtrunA17_Chr1g0177271 29.260 311 170 9 253 522 11 312 5.51e-24 105
Msa0176750 MtrunA17_Chr5g0434171 25.189 397 259 14 249 620 35 418 9.76e-23 101
Msa0176750 MtrunA17_Chr5g0404311 53.333 75 35 0 250 324 274 348 2.44e-22 102
Msa0176750 MtrunA17_Chr8g0353271 30.820 305 186 13 341 626 2 300 1.21e-20 93.6
Msa0176750 MtrunA17_Chr2g0278251 44.068 118 62 3 394 509 5 120 8.30e-20 86.7
Msa0176750 MtrunA17_Chr6g0449461 28.873 284 187 7 348 621 3 281 1.16e-18 87.8
Msa0176750 MtrunA17_Chr5g0435041 28.571 266 134 9 379 631 92 314 5.90e-18 86.3
Msa0176750 MtrunA17_Chr1g0188041 21.700 553 360 13 69 568 68 600 1.22e-17 87.4
Msa0176750 MtrunA17_Chr1g0177301 37.324 142 77 4 249 388 6 137 7.17e-17 83.2
Msa0176750 MtrunA17_Chr3g0144071 24.912 285 176 9 244 516 26 284 2.79e-16 82.8
Msa0176750 MtrunA17_Chr1g0196911 38.356 146 79 6 250 393 507 643 2.11e-15 80.5
Msa0176750 MtrunA17_Chr4g0025501 34.459 148 85 4 249 393 6 144 2.97e-15 78.2
Msa0176750 MtrunA17_Chr7g0275961 28.727 275 169 8 247 517 252 503 1.86e-14 77.0
Msa0176750 MtrunA17_Chr8g0390311 46.053 76 40 1 250 324 396 471 2.39e-14 77.0
Msa0176750 MtrunA17_Chr5g0412171 44.776 67 37 0 249 315 732 798 8.79e-14 74.7
Msa0176750 MtrunA17_Chr1g0202971 50.000 66 33 0 250 315 649 714 1.18e-13 74.3
Msa0176750 MtrunA17_Chr7g0259851 30.097 206 142 2 347 550 185 390 2.16e-13 73.6
Msa0176750 MtrunA17_Chr7g0215741 35.417 144 90 1 376 516 588 731 2.88e-13 73.2
Msa0176750 MtrunA17_Chr7g0247831 45.714 70 38 0 250 319 827 896 6.46e-13 72.0
Msa0176750 MtrunA17_Chr1g0205751 30.412 194 133 2 347 538 198 391 7.55e-13 71.6
Msa0176750 MtrunA17_Chr5g0394261 31.183 186 126 2 347 530 195 380 9.86e-13 71.2
Msa0176750 MtrunA17_Chr8g0346441 27.273 297 177 8 253 519 263 550 1.32e-12 71.2
Msa0176750 MtrunA17_Chr7g0214471 43.056 72 38 2 246 315 592 662 2.40e-12 70.5
Msa0176750 MtrunA17_Chr4g0070941 40.506 79 46 1 237 315 679 756 1.39e-11 67.8
Msa0176750 MtrunA17_Chr2g0328101 42.857 84 46 2 236 318 728 810 1.55e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0176750 AT3G54850.1 66.612 614 204 1 13 625 12 625 0.0 813
Msa0176750 AT3G46510.1 52.373 632 283 4 7 623 2 630 0.0 641
Msa0176750 AT2G28830.1 51.273 550 245 8 94 623 17 563 8.71e-179 520
Msa0176750 AT1G71020.1 45.710 641 303 12 4 622 3 620 1.59e-158 469
Msa0176750 AT1G23030.1 44.076 633 314 11 4 622 3 609 6.30e-153 454
Msa0176750 AT5G42340.1 42.139 617 330 6 17 624 60 658 1.96e-147 442
Msa0176750 AT1G71020.2 57.545 391 162 3 236 622 82 472 8.77e-142 421
Msa0176750 AT3G07360.1 42.257 381 209 8 250 622 75 452 4.14e-88 282
Msa0176750 AT1G29340.1 35.428 573 338 12 82 624 119 689 2.41e-84 280
Msa0176750 AT2G23140.3 54.513 277 125 1 345 621 352 627 1.64e-82 273
Msa0176750 AT2G23140.3 61.644 73 28 0 252 324 44 116 9.10e-27 115
Msa0176750 AT2G23140.5 54.513 277 125 1 345 621 352 627 1.64e-82 273
Msa0176750 AT2G23140.5 61.644 73 28 0 252 324 44 116 9.10e-27 115
Msa0176750 AT2G23140.1 49.062 320 161 2 302 621 502 819 1.18e-81 275
Msa0176750 AT2G23140.1 29.167 312 179 11 35 330 29 314 3.84e-27 117
Msa0176750 AT2G23140.2 49.062 320 161 2 302 621 499 816 1.64e-81 274
Msa0176750 AT2G23140.2 29.167 312 179 11 35 330 26 311 3.89e-27 117
Msa0176750 AT2G23140.4 49.062 320 161 2 302 621 499 816 1.64e-81 274
Msa0176750 AT2G23140.4 29.167 312 179 11 35 330 26 311 3.89e-27 117
Msa0176750 AT5G01830.1 32.388 670 383 21 1 632 17 654 2.77e-75 254
Msa0176750 AT3G01400.1 44.403 268 149 0 355 622 73 340 1.17e-67 225
Msa0176750 AT5G67340.1 46.154 286 152 2 337 621 413 697 1.84e-65 228
Msa0176750 AT5G67340.2 46.154 286 152 2 337 621 413 697 1.84e-65 228
Msa0176750 AT5G58680.1 39.228 311 185 4 316 622 29 339 5.98e-62 210
Msa0176750 AT4G16490.1 46.127 284 151 1 347 628 185 468 7.81e-61 210
Msa0176750 AT3G54790.2 48.327 269 137 2 350 617 441 708 1.79e-57 206
Msa0176750 AT3G54790.2 27.062 388 260 6 249 617 202 585 2.04e-27 118
Msa0176750 AT3G54790.2 29.952 207 141 4 346 550 520 724 6.12e-14 75.9
Msa0176750 AT3G54790.2 29.891 184 125 4 396 576 404 586 8.78e-13 72.0
Msa0176750 AT3G54790.3 48.327 269 137 2 350 617 477 744 4.69e-57 206
Msa0176750 AT3G54790.3 27.062 388 260 6 249 617 238 621 3.78e-27 117
Msa0176750 AT3G54790.3 29.952 207 141 4 346 550 556 760 7.85e-14 75.5
Msa0176750 AT3G54790.3 29.891 184 125 4 396 576 440 622 1.29e-12 71.6
Msa0176750 AT3G54790.1 48.327 269 137 2 350 617 477 744 4.69e-57 206
Msa0176750 AT3G54790.1 27.062 388 260 6 249 617 238 621 3.78e-27 117
Msa0176750 AT3G54790.1 29.952 207 141 4 346 550 556 760 7.85e-14 75.5
Msa0176750 AT3G54790.1 29.891 184 125 4 396 576 440 622 1.29e-12 71.6
Msa0176750 AT1G60190.1 27.454 652 434 16 8 624 19 666 4.89e-56 202
Msa0176750 AT5G18320.1 36.524 397 218 13 246 623 68 449 1.45e-55 196
Msa0176750 AT3G07360.5 38.438 320 186 8 311 622 1 317 7.08e-54 187
Msa0176750 AT3G07360.3 38.438 320 186 8 311 622 1 317 7.08e-54 187
Msa0176750 AT3G07360.9 38.438 320 186 8 311 622 1 317 7.08e-54 187
Msa0176750 AT3G07360.6 38.438 320 186 8 311 622 1 317 7.08e-54 187
Msa0176750 AT3G07360.2 38.438 320 186 8 311 622 1 317 7.08e-54 187
Msa0176750 AT3G07360.8 38.438 320 186 8 311 622 1 317 7.08e-54 187
Msa0176750 AT3G07360.10 38.438 320 186 8 311 622 1 317 7.08e-54 187
Msa0176750 AT3G07360.7 38.438 320 186 8 311 622 1 317 7.08e-54 187
Msa0176750 AT3G07360.4 38.438 320 186 8 311 622 1 317 7.08e-54 187
Msa0176750 AT1G27910.1 30.645 434 245 10 248 627 278 709 8.64e-49 182
Msa0176750 AT1G10560.1 26.947 642 401 18 35 624 52 677 1.61e-47 178
Msa0176750 AT4G21350.1 33.067 375 236 8 249 620 5 367 1.38e-45 166
Msa0176750 AT5G18330.1 30.211 427 247 15 218 622 48 445 1.19e-41 157
Msa0176750 AT1G24330.1 27.655 452 267 10 235 627 261 711 1.24e-38 152
Msa0176750 AT1G24330.2 27.655 452 267 10 235 627 261 711 1.24e-38 152
Msa0176750 AT5G65200.1 34.754 305 183 4 337 627 213 515 5.20e-38 149
Msa0176750 AT5G62560.1 36.264 273 167 3 350 617 239 509 1.83e-36 144
Msa0176750 AT5G62560.1 23.077 364 246 9 243 576 25 384 1.43e-11 67.8
Msa0176750 AT5G18340.1 29.505 444 276 16 200 620 25 454 8.63e-36 140
Msa0176750 AT5G40140.1 34.256 289 183 4 348 631 231 517 7.24e-35 139
Msa0176750 AT1G49780.1 31.235 413 231 11 249 628 14 406 1.15e-34 137
Msa0176750 AT3G19380.1 31.078 399 222 11 249 626 14 380 5.83e-34 134
Msa0176750 AT3G47820.1 34.286 280 174 5 350 621 210 487 2.69e-30 125
Msa0176750 AT1G67530.3 31.378 341 172 13 32 324 21 347 5.11e-30 125
Msa0176750 AT5G65920.1 27.990 393 236 11 247 619 58 423 5.57e-30 123
Msa0176750 AT5G65920.2 27.990 393 236 11 247 619 58 423 5.57e-30 123
Msa0176750 AT1G67530.2 31.378 341 172 13 32 324 21 347 6.20e-30 126
Msa0176750 AT1G67530.2 27.675 271 186 6 359 621 438 706 6.39e-20 94.7
Msa0176750 AT1G67530.1 31.378 341 172 13 32 324 21 347 6.20e-30 126
Msa0176750 AT1G67530.1 27.675 271 186 6 359 621 438 706 6.39e-20 94.7
Msa0176750 AT1G67530.4 31.378 341 172 13 32 324 21 347 6.20e-30 126
Msa0176750 AT1G67530.4 27.675 271 186 6 359 621 438 706 6.39e-20 94.7
Msa0176750 AT4G31890.3 34.106 302 182 8 344 632 142 439 8.15e-30 124
Msa0176750 AT4G31890.2 34.106 302 182 8 344 632 142 439 8.15e-30 124
Msa0176750 AT4G31890.1 34.106 302 182 8 344 632 142 439 8.15e-30 124
Msa0176750 AT4G12710.1 34.615 286 178 6 353 629 53 338 1.06e-28 119
Msa0176750 AT3G49810.1 28.238 386 240 11 249 619 64 427 1.51e-28 119
Msa0176750 AT5G37490.1 26.478 389 261 10 249 620 31 411 2.71e-28 118
Msa0176750 AT2G35930.1 30.671 313 187 10 249 544 12 311 1.75e-27 115
Msa0176750 AT1G66160.1 25.510 392 258 15 249 623 33 407 1.33e-25 110
Msa0176750 AT2G25130.1 32.841 271 164 8 368 624 132 398 1.02e-23 105
Msa0176750 AT5G64660.1 27.792 403 230 13 249 621 10 381 1.69e-23 103
Msa0176750 AT1G08315.1 30.201 298 185 11 344 620 6 301 7.65e-23 100
Msa0176750 AT3G52450.1 26.218 431 249 17 249 626 7 421 8.81e-22 99.0
Msa0176750 AT5G09800.1 25.203 369 234 13 249 598 11 356 3.05e-21 97.1
Msa0176750 AT3G03440.1 28.966 290 195 6 347 628 66 352 4.55e-20 93.6
Msa0176750 AT3G18710.1 21.827 394 278 10 249 621 12 396 3.89e-19 90.9
Msa0176750 AT5G14510.1 30.634 284 184 8 350 625 5 283 5.20e-17 83.2
Msa0176750 AT1G66160.2 23.469 392 250 16 249 623 33 391 8.66e-17 83.6
Msa0176750 AT4G36550.1 26.797 306 194 7 27 323 9 293 4.86e-16 82.4
Msa0176750 AT2G45920.1 35.897 156 83 6 174 320 249 396 1.20e-15 79.7
Msa0176750 AT1G01680.1 44.928 69 38 0 251 319 235 303 1.72e-14 75.1
Msa0176750 AT3G11840.1 52.778 72 32 2 249 319 10 80 1.82e-14 76.6
Msa0176750 AT3G61390.4 29.651 172 85 6 185 331 198 358 3.28e-14 75.1
Msa0176750 AT3G60350.1 32.022 178 116 2 376 548 590 767 3.68e-14 76.6
Msa0176750 AT3G60350.2 32.022 178 116 2 376 548 590 767 3.68e-14 76.6
Msa0176750 AT1G01660.2 43.421 76 41 1 245 320 496 569 5.20e-14 75.5
Msa0176750 AT3G61390.2 29.651 172 85 6 185 331 273 433 5.41e-14 75.1
Msa0176750 AT1G01660.1 43.421 76 41 1 245 320 495 568 5.47e-14 75.5
Msa0176750 AT2G44900.1 33.728 169 107 2 376 539 599 767 1.58e-13 74.7
Msa0176750 AT2G44900.2 33.728 169 107 2 376 539 599 767 1.58e-13 74.7
Msa0176750 AT1G20780.1 24.685 397 253 14 249 605 23 413 4.97e-13 72.8
Msa0176750 AT1G20780.2 24.685 397 253 14 249 605 23 413 4.97e-13 72.8
Msa0176750 AT1G20780.3 24.685 397 253 14 249 605 23 413 4.97e-13 72.8
Msa0176750 AT1G56040.1 46.479 71 36 1 242 312 348 416 5.56e-13 71.6
Msa0176750 AT5G65500.2 47.761 67 35 0 249 315 723 789 1.55e-12 71.2
Msa0176750 AT5G65500.1 47.761 67 35 0 249 315 715 781 1.64e-12 71.2
Msa0176750 AT1G56030.1 46.032 63 34 0 250 312 324 386 3.80e-12 68.9
Msa0176750 AT5G13060.1 29.798 198 137 2 347 542 227 424 7.76e-12 68.9
Msa0176750 AT2G45910.2 43.836 73 39 1 243 315 759 829 1.02e-11 68.6
Msa0176750 AT2G45910.1 43.836 73 39 1 243 315 759 829 1.02e-11 68.6
Msa0176750 AT5G57035.1 38.750 80 49 0 250 329 709 788 2.51e-11 67.4
Msa0176750 AT5G50900.1 29.353 201 134 5 335 529 131 329 2.95e-11 67.0
Msa0176750 AT1G68940.2 27.826 230 136 6 253 475 303 509 7.05e-11 66.2
Msa0176750 AT1G68940.1 27.826 230 136 6 253 475 303 509 7.48e-11 65.9
Msa0176750 AT1G68940.3 24.765 319 207 8 253 562 250 544 7.55e-11 65.9

Find 142 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTATAACCTCAACTAAAAT+AGG 0.132718 1_4:+63284135 None:intergenic
TGAATGACATTTGTTCTTAA+AGG 0.137385 1_4:-63283806 Msa0176750:three_prime_UTR
CTGCAACTCCCTTGCTTCTT+TGG 0.167120 1_4:+63284825 None:intergenic
TTTCTACGTGTGTATGAAAA+TGG 0.191194 1_4:-63288549 Msa0176750:exon
TTTAGGAAAGAGAGTGAAAT+TGG 0.226482 1_4:+63288741 None:intergenic
AACTGCTATCAAAGCTTTAT+TGG 0.228618 1_4:-63284763 Msa0176750:CDS
TGAAGAGTCTGATTGGTTTA+TGG 0.249287 1_4:-63284872 Msa0176750:CDS
TCCTTTGTTACTCTCGTTGA+TGG 0.253869 1_4:+63284551 None:intergenic
TGTTAGTTGAAAGACAATTT+AGG 0.257531 1_4:+63288724 None:intergenic
TGCTGGTGAGCTCCGGTTGC+TGG 0.264800 1_4:-63284700 Msa0176750:CDS
TTCAAAACATCTACAATATC+TGG 0.273503 1_4:+63284504 None:intergenic
GATTCAATCAGAGAGATTTC+TGG 0.292253 1_4:-63288482 Msa0176750:CDS
ATGATGAAAGATGCGAAATT+AGG 0.299565 1_4:+63288654 None:intergenic
TGAATCTTTGAGGGCTGCTT+TGG 0.304375 1_4:-63288327 Msa0176750:CDS
CTTCAGGGATTATCAGAAAA+TGG 0.310426 1_4:-63284003 Msa0176750:CDS
GAATGACATTTGTTCTTAAA+GGG 0.315283 1_4:-63283805 Msa0176750:three_prime_UTR
AGCAAATTCTGTTTGAGCTT+TGG 0.316577 1_4:+63285447 None:intergenic
TGGAGCAGAAGAAGCACTTC+AGG 0.351787 1_4:-63284019 Msa0176750:CDS
CGAAAATCATCTGGGATTAC+AGG 0.356127 1_4:+63285142 None:intergenic
CAGAGAGATTTCTGGGTTGC+CGG 0.364680 1_4:-63288474 Msa0176750:CDS
AACGTTTGTAAGAAGATGTA+TGG 0.367485 1_4:-63288443 Msa0176750:CDS
AGACTCTTCAAAACGTAGTT+AGG 0.375832 1_4:+63284885 None:intergenic
TCATGGGAGTAAGCTTTATC+AGG 0.393424 1_4:-63288273 Msa0176750:intron
TTCATCAGTTCGAGAGATAT+AGG 0.393884 1_4:+63285115 None:intergenic
TGACCGGTTGAGACGATTAC+AGG 0.398865 1_4:+63285088 None:intergenic
GGCTATGGTTGTGGGTCGTT+TGG 0.400292 1_4:-63288507 Msa0176750:CDS
TGAAACATTCTCGTTCTCAT+AGG 0.402456 1_4:+63285180 None:intergenic
GCTATAATGACAATCCTTGC+AGG 0.409994 1_4:-63284201 Msa0176750:CDS
CGACCCACAACCATAGCCTT+TGG 0.411693 1_4:+63288512 None:intergenic
CATTTCTCTTGGCCAGCAAC+CGG 0.412479 1_4:+63284688 None:intergenic
CTCACGGTTGCGTGGTGATC+CGG 0.413042 1_4:+63284110 None:intergenic
TCCTTTGTTTGAGGAATTGA+AGG 0.413739 1_4:-63288390 Msa0176750:CDS
GAGCTTTGTTAAGATTTAGA+AGG 0.413993 1_4:+63288605 None:intergenic
ATTCAATCAGAGAGATTTCT+GGG 0.416013 1_4:-63288481 Msa0176750:CDS
GTCCACTGAATTACACGAAT+TGG 0.417527 1_4:-63285305 Msa0176750:CDS
ATCAGAGGAAGTTCAAGAAC+AGG 0.429116 1_4:-63285644 Msa0176750:intron
CAAAGTAACTTTATAAGAGC+CGG 0.431128 1_4:+63284381 None:intergenic
TCCTTTGATACGATTTATGA+AGG 0.431714 1_4:-63284256 Msa0176750:CDS
GATAGAGCTAAGAGAAAAGC+TGG 0.432820 1_4:-63283976 Msa0176750:CDS
TTTAATCTATGTATTTATCA+AGG 0.434426 1_4:-63284315 Msa0176750:CDS
AGTTGCAGAACAAAGAAATC+TGG 0.441575 1_4:-63284810 Msa0176750:CDS
TCGGTTATCTGCATTTCTCT+TGG 0.444128 1_4:+63284677 None:intergenic
ATAGGACACCGAAAATCATC+TGG 0.444428 1_4:+63285133 None:intergenic
CTTCTCAAGTCCGTGAATCA+TGG 0.447074 1_4:-63288290 Msa0176750:CDS
TCATAGTTCAAATATAGATA+TGG 0.447160 1_4:-63283872 Msa0176750:three_prime_UTR
TTCTCATAGGTATCAACCTC+AGG 0.450223 1_4:+63285193 None:intergenic
TGCTGATTTACAACTAGACT+TGG 0.455398 1_4:-63285428 Msa0176750:CDS
TTAGTTGAGGTTATACGAAC+CGG 0.456126 1_4:-63284129 Msa0176750:CDS
TTGCTGTCCTTCCTTCATGA+TGG 0.458588 1_4:+63284178 None:intergenic
GAATCCAAAGGCTATGGTTG+TGG 0.460327 1_4:-63288516 Msa0176750:CDS
GTATAACCTCAACTAAAATA+GGG 0.461180 1_4:+63284136 None:intergenic
TTCCTTCATGATGGCCTGCA+AGG 0.462779 1_4:+63284187 None:intergenic
TTTACATGTCACAGGCTTTG+CGG 0.464322 1_4:-63285753 Msa0176750:intron
TCAAAACGTAGTTAGGAGTA+AGG 0.468306 1_4:+63284892 None:intergenic
ACCGCATGCTCCTGAGTTCG+AGG 0.468410 1_4:+63284594 None:intergenic
TTAGATCATTCATAGTCCTC+AGG 0.469633 1_4:+63285335 None:intergenic
ACCTCAACTAAAATAGGGAT+TGG 0.470796 1_4:+63284141 None:intergenic
TTCCACAGATCCTCGAACTC+AGG 0.479457 1_4:-63284604 Msa0176750:CDS
GAAGGATGCGGGCGGTGGGA+TGG 0.485190 1_4:-63284238 Msa0176750:CDS
CATGAAGGAAGGACAGCAAT+TGG 0.491237 1_4:-63284174 Msa0176750:CDS
GGGCGGCTGCTGGTGAGCTC+CGG 0.491475 1_4:-63284707 Msa0176750:CDS
TCTGTCACAATCTGAAAGAC+TGG 0.500337 1_4:+63284785 None:intergenic
AAAGTTGCAATAGGTGCAGC+AGG 0.503040 1_4:-63284411 Msa0176750:CDS
TTCTACGTGTGTATGAAAAT+GGG 0.503438 1_4:-63288548 Msa0176750:exon
TTTATGAAGGATGCGGGCGG+TGG 0.504174 1_4:-63284243 Msa0176750:CDS
AAGCGGTATTGCTCCTGCTT+CGG 0.508786 1_4:+63284644 None:intergenic
AAGCTTACTCCCATGATTCA+CGG 0.509123 1_4:+63288280 None:intergenic
CGAGTATGTATTGCCGAAGC+AGG 0.513878 1_4:-63284657 Msa0176750:CDS
TGTTAAGATTTAGAAGGTGA+TGG 0.516013 1_4:+63288611 None:intergenic
GATACGATTTATGAAGGATG+CGG 0.516210 1_4:-63284250 Msa0176750:CDS
GACGAGAACAAAGTTGCAAT+AGG 0.518268 1_4:-63284420 Msa0176750:CDS
GATCCTGTAATCGTCTCAAC+CGG 0.519344 1_4:-63285091 Msa0176750:CDS
TGTAATCGTCTCAACCGGTC+AGG 0.519349 1_4:-63285086 Msa0176750:intron
TTCTCAAGTCCGTGAATCAT+GGG 0.519412 1_4:-63288289 Msa0176750:CDS
AATCCAAAGGCTATGGTTGT+GGG 0.521446 1_4:-63288515 Msa0176750:CDS
TGTATGGGAATTTGATTCGT+AGG 0.524170 1_4:-63288427 Msa0176750:CDS
TAATGATATTGAACAGCAAA+GGG 0.525276 1_4:-63284727 Msa0176750:CDS
AAAGCTAGAGCTGTTAAAGC+CGG 0.526299 1_4:-63284288 Msa0176750:CDS
ATAACAAGCAACGGAGAACT+AGG 0.529713 1_4:-63285280 Msa0176750:CDS
GAACAGCAAAGGGCGGCTGC+TGG 0.530588 1_4:-63284717 Msa0176750:CDS
CTTATAAAGTTACTTTGTGA+AGG 0.532116 1_4:-63284375 Msa0176750:CDS
AGGAAGGACAGCAATTGGTC+AGG 0.536014 1_4:-63284169 Msa0176750:CDS
AGGTGCAGCAGGAGCCATCC+CGG 0.539324 1_4:-63284400 Msa0176750:CDS
GTATGGGAATTTGATTCGTA+GGG 0.540661 1_4:-63288426 Msa0176750:CDS
GTAATGATATTGAACAGCAA+AGG 0.541492 1_4:-63284728 Msa0176750:CDS
GTTGTGTTAGAACATAGAAA+TGG 0.543367 1_4:+63288786 None:intergenic
GAACTGTTGCAGCGAATCGA+AGG 0.545611 1_4:-63283943 Msa0176750:CDS
ATACGATTTATGAAGGATGC+GGG 0.548943 1_4:-63284249 Msa0176750:CDS
AAAGTAACTTTATAAGAGCC+GGG 0.549044 1_4:+63284382 None:intergenic
CTCCTGAGTTCGAGGATCTG+TGG 0.551751 1_4:+63284602 None:intergenic
TCCTTCAATTCCTCAAACAA+AGG 0.552404 1_4:+63288389 None:intergenic
CTGCTTCGGCAATACATACT+CGG 0.554371 1_4:+63284658 None:intergenic
GGAGCAGAAGAAGCACTTCA+GGG 0.556560 1_4:-63284018 Msa0176750:CDS
AAGCTAGAGCTGTTAAAGCC+GGG 0.558896 1_4:-63284287 Msa0176750:CDS
CAAAACGTAGTTAGGAGTAA+GGG 0.565631 1_4:+63284893 None:intergenic
TTATGAAGGATGCGGGCGGT+GGG 0.567221 1_4:-63284242 Msa0176750:CDS
AACTGTTGCAGCGAATCGAA+GGG 0.569767 1_4:-63283942 Msa0176750:CDS
GACCAATTCGTGTAATTCAG+TGG 0.570216 1_4:+63285303 None:intergenic
ATCCTTGCAGGCCATCATGA+AGG 0.571335 1_4:-63284189 Msa0176750:CDS
GAGCGAGAATCCAAAGGCTA+TGG 0.574636 1_4:-63288522 Msa0176750:CDS
TCCTTCATAAATCGTATCAA+AGG 0.578982 1_4:+63284255 None:intergenic
AAGGATTGTGATGAGTCTCT+TGG 0.586282 1_4:-63288371 Msa0176750:CDS
TATCAAAGGAGCAACTATCC+CGG 0.586650 1_4:+63284269 None:intergenic
TTGAAACTAGCAAAGGAACA+TGG 0.590002 1_4:-63284039 Msa0176750:CDS
AACTAAAATAGGGATTGGCT+CGG 0.594552 1_4:+63284146 None:intergenic
TCTCAGAGAAGTTGCACCTG+AGG 0.594729 1_4:-63285351 Msa0176750:CDS
GACAACAAGTCTACGAGAAG+CGG 0.596931 1_4:+63284627 None:intergenic
AAAGTTACACTCGAGAGGCT+AGG 0.597677 1_4:+63283900 None:intergenic
TAACTTTATAAGAGCCGGGA+TGG 0.597754 1_4:+63284386 None:intergenic
ACGTTTGTAAGAAGATGTAT+GGG 0.602477 1_4:-63288442 Msa0176750:CDS
AGAATGTTTCAATTAAGCAC+CGG 0.604626 1_4:-63285168 Msa0176750:CDS
GCAGCATTCTCACGGTTGCG+TGG 0.609043 1_4:+63284102 None:intergenic
GTTGAACTACCAAAGAAGCA+AGG 0.609236 1_4:-63284834 Msa0176750:CDS
CATCTGGGATTACAGGAGAC+CGG 0.612294 1_4:+63285149 None:intergenic
TCCTCGAACTCAGGAGCATG+CGG 0.612420 1_4:-63284595 Msa0176750:CDS
TTGCAGGCCATCATGAAGGA+AGG 0.615941 1_4:-63284185 Msa0176750:CDS
GATTGTGGATAATACCTGAC+CGG 0.618738 1_4:+63285072 None:intergenic
GGTTTATGGTGTGATAGCAA+TGG 0.620008 1_4:-63284858 Msa0176750:CDS
TTGAACTACCAAAGAAGCAA+GGG 0.622309 1_4:-63284833 Msa0176750:CDS
TCCATCAACGAGAGTAACAA+AGG 0.627518 1_4:-63284552 Msa0176750:CDS
AGTTCAAATATAGATATGGT+CGG 0.632146 1_4:-63283868 Msa0176750:three_prime_UTR
AAACAGCAGCAGCATTCTCA+CGG 0.633676 1_4:+63284094 None:intergenic
ATAATAAAGTTACACTCGAG+AGG 0.634199 1_4:+63283895 None:intergenic
TAGGACACCGAAAATCATCT+GGG 0.636004 1_4:+63285134 None:intergenic
ACATGTCACAGGCTTTGCGG+AGG 0.639360 1_4:-63285750 Msa0176750:intron
CTTTGTGAAGGTACTCCAAG+AGG 0.641917 1_4:-63284363 Msa0176750:CDS
TATTTGTTGGAACTTATCTG+CGG 0.643137 1_4:+63285720 None:intergenic
AAGATGCGAAATTAGGATTG+TGG 0.645189 1_4:+63288661 None:intergenic
ACTGCAATTGAAACTAGCAA+AGG 0.645318 1_4:-63284046 Msa0176750:CDS
GAATTGGTCATAACAAGCAA+CGG 0.648481 1_4:-63285289 Msa0176750:CDS
TACGTGTGTATGAAAATGGG+TGG 0.654124 1_4:-63288545 Msa0176750:exon
CATGGAGGCAAGAGAAAACG+CGG 0.658502 1_4:-63284472 Msa0176750:CDS
CAACAAACTTGAGATATCAG+AGG 0.659687 1_4:-63285659 Msa0176750:CDS
GGGTGGGAGCGAGAATCCAA+AGG 0.667061 1_4:-63288528 Msa0176750:CDS
GTTGCAGCGAATCGAAGGGG+AGG 0.677232 1_4:-63283938 Msa0176750:CDS
TGATGGAGAATACCCAGATG+AGG 0.679589 1_4:+63288628 None:intergenic
TGATATTGAACAGCAAAGGG+CGG 0.681387 1_4:-63284724 Msa0176750:CDS
AAAGGAACTATAGTAAACGC+AGG 0.682325 1_4:-63284534 Msa0176750:CDS
CGTGCTCGCAGAAAATCCTG+AGG 0.685860 1_4:-63285209 Msa0176750:CDS
ACTGTTGCAGCGAATCGAAG+GGG 0.696214 1_4:-63283941 Msa0176750:CDS
ACGTGTGTATGAAAATGGGT+GGG 0.705343 1_4:-63288544 Msa0176750:exon
CGATTTATGAAGGATGCGGG+CGG 0.720329 1_4:-63284246 Msa0176750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATGATAAATAAAAATT+CGG - chr1_4:63284722-63284741 Msa0176750:CDS 10.0%
!!! ATAAACTTTTAAAAATGTTA+AGG - chr1_4:63288775-63288794 Msa0176750:five_prime_UTR 10.0%
!!! TTTTTTTTTTTTATCCCTTT+TGG - chr1_4:63284254-63284273 Msa0176750:CDS 15.0%
!!! TTAGTTTTTTATTTGATTGA+TGG - chr1_4:63284299-63284318 Msa0176750:CDS 15.0%
!!! ATTGATTTTTACATAATGTT+TGG - chr1_4:63284403-63284422 Msa0176750:CDS 15.0%
!!! AATTTTAGCTTCAAATTTAT+TGG - chr1_4:63284515-63284534 Msa0176750:CDS 15.0%
!! GTATATTAAAGTTTAGTATA+AGG + chr1_4:63286064-63286083 None:intergenic 15.0%
!! TTTCAATTAAAACACCAAAA+GGG + chr1_4:63284271-63284290 None:intergenic 20.0%
!! TAAAGTTATAATCAACTAAG+AGG + chr1_4:63284454-63284473 None:intergenic 20.0%
!! AAAGTGAATTGAATATAAAG+CGG + chr1_4:63284577-63284596 None:intergenic 20.0%
!!! ATATTCAATTCACTTTTAGT+CGG - chr1_4:63284581-63284600 Msa0176750:CDS 20.0%
!!! AAGGGTAACATAAATTTTAT+AGG + chr1_4:63284778-63284797 None:intergenic 20.0%
!! GATTGTATTATATAGTCTTT+GGG - chr1_4:63284809-63284828 Msa0176750:CDS 20.0%
!!! AAATTTTCAAGTTTAATTGC+TGG - chr1_4:63285116-63285135 Msa0176750:CDS 20.0%
!! CTATTATGTAATAAAGAGTA+TGG - chr1_4:63285195-63285214 Msa0176750:CDS 20.0%
!! ATGGTAAATAAAGATTTGAT+AGG - chr1_4:63285227-63285246 Msa0176750:CDS 20.0%
!!! AGTTTAGTATAAGGATATTT+TGG + chr1_4:63286055-63286074 None:intergenic 20.0%
!!! GGCTAAACTATTTTTTAATT+TGG - chr1_4:63286232-63286251 Msa0176750:intron 20.0%
!! AATATAATTGTATATCACCA+TGG - chr1_4:63286406-63286425 Msa0176750:intron 20.0%
!!! ATTGTAGATGTTTTGAAAAA+CGG - chr1_4:63287994-63288013 Msa0176750:intron 20.0%
!! TCATAGTTCAAATATAGATA+TGG - chr1_4:63288620-63288639 Msa0176750:five_prime_UTR 20.0%
!!! CTTTTAATAAATGTTATGTG+AGG - chr1_4:63288726-63288745 Msa0176750:five_prime_UTR 20.0%
! TGTTAGTTGAAAGACAATTT+AGG + chr1_4:63283771-63283790 None:intergenic 25.0%
! CTTTCAATTAAAACACCAAA+AGG + chr1_4:63284272-63284291 None:intergenic 25.0%
! TGATGGAGAATTAAAAATTC+AGG - chr1_4:63284316-63284335 Msa0176750:CDS 25.0%
!! ATGTTATGTTCCAATTTTGA+AGG - chr1_4:63284353-63284372 Msa0176750:CDS 25.0%
!! TAAATTTTATAGGCAGTGTT+AGG + chr1_4:63284768-63284787 None:intergenic 25.0%
!!! TATGTTACCCTTCTATTTTT+TGG - chr1_4:63284786-63284805 Msa0176750:CDS 25.0%
!!! ATGTTACCCTTCTATTTTTT+GGG - chr1_4:63284787-63284806 Msa0176750:CDS 25.0%
! TACAATCCCAAAAAATAGAA+GGG + chr1_4:63284796-63284815 None:intergenic 25.0%
! ATACAATCCCAAAAAATAGA+AGG + chr1_4:63284797-63284816 None:intergenic 25.0%
! GGATTGTATTATATAGTCTT+TGG - chr1_4:63284808-63284827 Msa0176750:CDS 25.0%
! TTTCATTTGCTTCAATTCTA+AGG - chr1_4:63284892-63284911 Msa0176750:CDS 25.0%
! ACACACTTCAAATTAAACAT+GGG + chr1_4:63284932-63284951 None:intergenic 25.0%
! TACACACTTCAAATTAAACA+TGG + chr1_4:63284933-63284952 None:intergenic 25.0%
!!! GTTTAATTTGAAGTGTGTAT+TGG - chr1_4:63284934-63284953 Msa0176750:CDS 25.0%
! ATACATACTTGAACAAAGAA+TGG + chr1_4:63284982-63285001 None:intergenic 25.0%
! AATTGAAAGATAACTGCAAA+AGG + chr1_4:63285415-63285434 None:intergenic 25.0%
! GAATTAAAATGCACAAATAG+TGG + chr1_4:63285460-63285479 None:intergenic 25.0%
! AACTTACAGAAGATAGAAAA+GGG + chr1_4:63285482-63285501 None:intergenic 25.0%
!! GGATGCTTAAAGTTTAATTT+CGG - chr1_4:63285758-63285777 Msa0176750:intron 25.0%
! AGTAGATTTGACATATTGTT+TGG - chr1_4:63285971-63285990 Msa0176750:intron 25.0%
! TAATATAAGAGGAATCAAAG+AGG - chr1_4:63286304-63286323 Msa0176750:intron 25.0%
!!! ACGTCTATTTTATTTCTCTT+TGG + chr1_4:63286486-63286505 None:intergenic 25.0%
! AAGAGAAATAAAATAGACGT+AGG - chr1_4:63286486-63286505 Msa0176750:intron 25.0%
! TAGAGAAGAAATAAGAAAGA+GGG + chr1_4:63286595-63286614 None:intergenic 25.0%
! TACAAAACATAGTGTAAAAG+AGG - chr1_4:63286613-63286632 Msa0176750:intron 25.0%
! ACAAAACATAGTGTAAAAGA+GGG - chr1_4:63286614-63286633 Msa0176750:intron 25.0%
!!! CAATTTTTTCGGTTATTTGT+TGG + chr1_4:63286788-63286807 None:intergenic 25.0%
! TTTGCAGAAATTCAAAATCA+CGG + chr1_4:63286904-63286923 None:intergenic 25.0%
! AACAGTCGGAAAAAAATATA+TGG + chr1_4:63286980-63286999 None:intergenic 25.0%
! TTTCATATGTCTGCAAAATA+AGG + chr1_4:63287504-63287523 None:intergenic 25.0%
! TAATGATATTGAACAGCAAA+GGG - chr1_4:63287765-63287784 Msa0176750:intron 25.0%
! TTCAAAACATCTACAATATC+TGG + chr1_4:63287991-63288010 None:intergenic 25.0%
!! CTTATAAAGTTACTTTGTGA+AGG - chr1_4:63288117-63288136 Msa0176750:intron 25.0%
! GTATAACCTCAACTAAAATA+GGG + chr1_4:63288359-63288378 None:intergenic 25.0%
! AGTTCAAATATAGATATGGT+CGG - chr1_4:63288624-63288643 Msa0176750:five_prime_UTR 25.0%
! TGAATGACATTTGTTCTTAA+AGG - chr1_4:63288686-63288705 Msa0176750:five_prime_UTR 25.0%
! GAATGACATTTGTTCTTAAA+GGG - chr1_4:63288687-63288706 Msa0176750:five_prime_UTR 25.0%
GTTGTGTTAGAACATAGAAA+TGG + chr1_4:63283709-63283728 None:intergenic 30.0%
TTTAGGAAAGAGAGTGAAAT+TGG + chr1_4:63283754-63283773 None:intergenic 30.0%
ATGATGAAAGATGCGAAATT+AGG + chr1_4:63283841-63283860 None:intergenic 30.0%
! TTTCATCATTTTCCTCATCT+GGG - chr1_4:63283852-63283871 Msa0176750:three_prime_UTR 30.0%
TGTTAAGATTTAGAAGGTGA+TGG + chr1_4:63283884-63283903 None:intergenic 30.0%
!! GAGCTTTGTTAAGATTTAGA+AGG + chr1_4:63283890-63283909 None:intergenic 30.0%
TTTCTACGTGTGTATGAAAA+TGG - chr1_4:63283943-63283962 Msa0176750:CDS 30.0%
TTCTACGTGTGTATGAAAAT+GGG - chr1_4:63283944-63283963 Msa0176750:CDS 30.0%
ATTCAATCAGAGAGATTTCT+GGG - chr1_4:63284011-63284030 Msa0176750:CDS 30.0%
!! TTACAAACGTTTTGACATTC+CGG + chr1_4:63284040-63284059 None:intergenic 30.0%
AACGTTTGTAAGAAGATGTA+TGG - chr1_4:63284049-63284068 Msa0176750:CDS 30.0%
ACGTTTGTAAGAAGATGTAT+GGG - chr1_4:63284050-63284069 Msa0176750:CDS 30.0%
! TTGAAGCTTTTGAATCTTTG+AGG - chr1_4:63284155-63284174 Msa0176750:CDS 30.0%
! TGAAGCTTTTGAATCTTTGA+GGG - chr1_4:63284156-63284175 Msa0176750:CDS 30.0%
!! TTATGTTCCAATTTTGAAGG+AGG - chr1_4:63284356-63284375 Msa0176750:CDS 30.0%
AACATTACCTCCTTCAAAAT+TGG + chr1_4:63284366-63284385 None:intergenic 30.0%
! GGAGGTAATGTTGATTATAA+AGG - chr1_4:63284374-63284393 Msa0176750:CDS 30.0%
!!! AGATGCAAATGCATTGATTT+TGG - chr1_4:63284688-63284707 Msa0176750:CDS 30.0%
!!! GATGCAAATGCATTGATTTT+GGG - chr1_4:63284689-63284708 Msa0176750:CDS 30.0%
AAATATTCAAGCTCAATTGC+AGG - chr1_4:63285006-63285025 Msa0176750:intron 30.0%
ACAACACCAATTTAAGCAAT+CGG + chr1_4:63285037-63285056 None:intergenic 30.0%
AGAACACATGTTTCAAATTC+AGG + chr1_4:63285062-63285081 None:intergenic 30.0%
! ATTTGAAACATGTGTTCTTG+CGG - chr1_4:63285064-63285083 Msa0176750:intron 30.0%
! ATGTAATAAAGAGTATGGTG+AGG - chr1_4:63285200-63285219 Msa0176750:CDS 30.0%
CAACTTACAGAAGATAGAAA+AGG + chr1_4:63285483-63285502 None:intergenic 30.0%
TTTCTATCTTCTGTAAGTTG+CGG - chr1_4:63285483-63285502 Msa0176750:intron 30.0%
TGTCGTATGTATCAAACATA+TGG - chr1_4:63285565-63285584 Msa0176750:intron 30.0%
TCTCTAATCTGCAAAGTAAA+CGG - chr1_4:63285704-63285723 Msa0176750:CDS 30.0%
AACCTATGAACTGAATAGAA+TGG - chr1_4:63285737-63285756 Msa0176750:CDS 30.0%
ATCCATTCTATTCAGTTCAT+AGG + chr1_4:63285742-63285761 None:intergenic 30.0%
! AAAAGTGTATTCCTGAAATC+AGG - chr1_4:63285787-63285806 Msa0176750:intron 30.0%
TGAAAGAAAAAAACTTGCAC+AGG + chr1_4:63285818-63285837 None:intergenic 30.0%
ACTAGCTGAATATTTCAATG+TGG - chr1_4:63285852-63285871 Msa0176750:intron 30.0%
TCAATGTGGATAAATGTCTA+AGG - chr1_4:63285866-63285885 Msa0176750:intron 30.0%
CAATGTGGATAAATGTCTAA+GGG - chr1_4:63285867-63285886 Msa0176750:intron 30.0%
! AAGTATGTAAGAGAGAGTAT+AGG - chr1_4:63285924-63285943 Msa0176750:intron 30.0%
! TATATCACCATGGACAATTT+TGG - chr1_4:63286416-63286435 Msa0176750:intron 30.0%
! ATCTCTCTTTTAAACCAAAC+AGG - chr1_4:63286536-63286555 Msa0176750:intron 30.0%
GTAGAGAAGAAATAAGAAAG+AGG + chr1_4:63286596-63286615 None:intergenic 30.0%
! TATTTGTTGGAACTTATCTG+CGG + chr1_4:63286775-63286794 None:intergenic 30.0%
!!! CAATGCAGCTTCAATTTTTT+CGG + chr1_4:63286799-63286818 None:intergenic 30.0%
CTGAAAGAGATTAAAACAGT+CGG + chr1_4:63286994-63287013 None:intergenic 30.0%
!! GTCTTTCAGTTTTCTAAGAA+GGG + chr1_4:63287261-63287280 None:intergenic 30.0%
!! AGTCTTTCAGTTTTCTAAGA+AGG + chr1_4:63287262-63287281 None:intergenic 30.0%
AGAATGTTTCAATTAAGCAC+CGG - chr1_4:63287324-63287343 Msa0176750:intron 30.0%
ATATGTCTGCAAAATAAGGT+AGG + chr1_4:63287500-63287519 None:intergenic 30.0%
AAAGATCCTGCATTCAAAAA+TGG - chr1_4:63287521-63287540 Msa0176750:intron 30.0%
! AACTGCTATCAAAGCTTTAT+TGG - chr1_4:63287729-63287748 Msa0176750:intron 30.0%
GTAATGATATTGAACAGCAA+AGG - chr1_4:63287764-63287783 Msa0176750:intron 30.0%
AAAGTAACTTTATAAGAGCC+GGG + chr1_4:63288113-63288132 None:intergenic 30.0%
CAAAGTAACTTTATAAGAGC+CGG + chr1_4:63288114-63288133 None:intergenic 30.0%
TCCTTTGATACGATTTATGA+AGG - chr1_4:63288236-63288255 Msa0176750:intron 30.0%
TCCTTCATAAATCGTATCAA+AGG + chr1_4:63288240-63288259 None:intergenic 30.0%
CGTATAACCTCAACTAAAAT+AGG + chr1_4:63288360-63288379 None:intergenic 30.0%
ATAATAAAGTTACACTCGAG+AGG + chr1_4:63288600-63288619 None:intergenic 30.0%
TGTGGTGAAGAGTTGAAAAA+TGG + chr1_4:63283816-63283835 None:intergenic 35.0%
AAGATGCGAAATTAGGATTG+TGG + chr1_4:63283834-63283853 None:intergenic 35.0%
! CTTTCATCATTTTCCTCATC+TGG - chr1_4:63283851-63283870 Msa0176750:three_prime_UTR 35.0%
ACACACGTAGAAAAAGTCAA+AGG + chr1_4:63283936-63283955 None:intergenic 35.0%
GATTCAATCAGAGAGATTTC+TGG - chr1_4:63284010-63284029 Msa0176750:CDS 35.0%
! TGTATGGGAATTTGATTCGT+AGG - chr1_4:63284065-63284084 Msa0176750:CDS 35.0%
! GTATGGGAATTTGATTCGTA+GGG - chr1_4:63284066-63284085 Msa0176750:CDS 35.0%
! TCCTTTGTTTGAGGAATTGA+AGG - chr1_4:63284102-63284121 Msa0176750:CDS 35.0%
TCCTTCAATTCCTCAAACAA+AGG + chr1_4:63284106-63284125 None:intergenic 35.0%
GAACATGTTCACGTAAAAGT+GGG + chr1_4:63284545-63284564 None:intergenic 35.0%
TGAACATGTTCACGTAAAAG+TGG + chr1_4:63284546-63284565 None:intergenic 35.0%
TGACTTTGAACGAGTTTACT+GGG + chr1_4:63284618-63284637 None:intergenic 35.0%
TTGACTTTGAACGAGTTTAC+TGG + chr1_4:63284619-63284638 None:intergenic 35.0%
TAACAGATAAAGCGAGTGTT+TGG + chr1_4:63284661-63284680 None:intergenic 35.0%
CTCGCTTTATCTGTTATAGT+AGG - chr1_4:63284665-63284684 Msa0176750:CDS 35.0%
! TTTTCTCCATATGCAGAGAA+AGG + chr1_4:63284871-63284890 None:intergenic 35.0%
CAACACCAATTTAAGCAATC+GGG + chr1_4:63285036-63285055 None:intergenic 35.0%
GGTCTCTATCATTAAGCAAT+TGG + chr1_4:63285147-63285166 None:intergenic 35.0%
! AAGAGTATGGTGAGGTTATA+TGG - chr1_4:63285208-63285227 Msa0176750:CDS 35.0%
GATTTGATAGGATGCTTAGT+TGG - chr1_4:63285239-63285258 Msa0176750:CDS 35.0%
CCTCACTGTTTATACTACTA+AGG + chr1_4:63285278-63285297 None:intergenic 35.0%
CCTTAGTAGTATAAACAGTG+AGG - chr1_4:63285275-63285294 Msa0176750:CDS 35.0%
TAGTAGTATAAACAGTGAGG+TGG - chr1_4:63285278-63285297 Msa0176750:CDS 35.0%
AGTAGTATAAACAGTGAGGT+GGG - chr1_4:63285279-63285298 Msa0176750:CDS 35.0%
GATTATTGCTAGGACCATTA+TGG - chr1_4:63285323-63285342 Msa0176750:CDS 35.0%
CTTTCTTTGCCTAACCATAA+TGG + chr1_4:63285340-63285359 None:intergenic 35.0%
! AGAGTGTTCTCTTTCTTTGA+AGG - chr1_4:63285358-63285377 Msa0176750:CDS 35.0%
!! TTCTTTGAAGGAGTTTTGCT+CGG - chr1_4:63285370-63285389 Msa0176750:CDS 35.0%
TAAGATTCATTGAAAGTCGC+AGG + chr1_4:63285624-63285643 None:intergenic 35.0%
GCGACTTTCAATGAATCTTA+AGG - chr1_4:63285624-63285643 Msa0176750:intron 35.0%
AGAAAAACTGATGACCACAT+TGG + chr1_4:63285682-63285701 None:intergenic 35.0%
! TAAATGTCTAAGGGTGTGTT+TGG - chr1_4:63285876-63285895 Msa0176750:intron 35.0%
! CTCTTTTCCAAAATTGTCCA+TGG + chr1_4:63286426-63286445 None:intergenic 35.0%
AGAGAGAGACCAAATATTGT+GGG + chr1_4:63286513-63286532 None:intergenic 35.0%
AAGAGAGAGACCAAATATTG+TGG + chr1_4:63286514-63286533 None:intergenic 35.0%
! CTTTTAAACCAAACAGGAGA+AGG - chr1_4:63286542-63286561 Msa0176750:intron 35.0%
TTCAGATGCTATATGCTTTC+TGG - chr1_4:63286650-63286669 Msa0176750:intron 35.0%
!! ATGCTATATGCTTTCTGGTT+CGG - chr1_4:63286655-63286674 Msa0176750:intron 35.0%
!!! TTCGGTTTTGTTTACCAAAC+AGG - chr1_4:63286673-63286692 Msa0176750:intron 35.0%
!! ATTGTTGCTTTACATGTCAC+AGG - chr1_4:63286731-63286750 Msa0176750:intron 35.0%
CAACAAACTTGAGATATCAG+AGG - chr1_4:63286833-63286852 Msa0176750:intron 35.0%
!!! CTGTTTTTGCCAAGGTTAAA+GGG - chr1_4:63286927-63286946 Msa0176750:intron 35.0%
AGCAAATTCTGTTTGAGCTT+TGG + chr1_4:63287048-63287067 None:intergenic 35.0%
!! TGCTGATTTACAACTAGACT+TGG - chr1_4:63287064-63287083 Msa0176750:intron 35.0%
!! TTTTGAGTATAGCAGGATCA+GGG + chr1_4:63287118-63287137 None:intergenic 35.0%
TTAGATCATTCATAGTCCTC+AGG + chr1_4:63287160-63287179 None:intergenic 35.0%
GAATTGGTCATAACAAGCAA+CGG - chr1_4:63287203-63287222 Msa0176750:intron 35.0%
!! TTTTCTAAGAAGGGATGAGA+CGG + chr1_4:63287252-63287271 None:intergenic 35.0%
TGAAACATTCTCGTTCTCAT+AGG + chr1_4:63287315-63287334 None:intergenic 35.0%
! CTGTAATCCCAGATGATTTT+CGG - chr1_4:63287351-63287370 Msa0176750:intron 35.0%
TTCATCAGTTCGAGAGATAT+AGG + chr1_4:63287380-63287399 None:intergenic 35.0%
GAACAATGTTTCGCACAAAA+AGG + chr1_4:63287445-63287464 None:intergenic 35.0%
!!! ATCAAGCCATTTTTGAATGC+AGG + chr1_4:63287530-63287549 None:intergenic 35.0%
ATTCAAAAATGGCTTGATGC+TGG - chr1_4:63287532-63287551 Msa0176750:intron 35.0%
!! AAAGTGTCTGCTGTGTTTTA+GGG + chr1_4:63287570-63287589 None:intergenic 35.0%
!!! AAAAGTGTCTGCTGTGTTTT+AGG + chr1_4:63287571-63287590 None:intergenic 35.0%
CAAAACGTAGTTAGGAGTAA+GGG + chr1_4:63287602-63287621 None:intergenic 35.0%
TCAAAACGTAGTTAGGAGTA+AGG + chr1_4:63287603-63287622 None:intergenic 35.0%
AGACTCTTCAAAACGTAGTT+AGG + chr1_4:63287610-63287629 None:intergenic 35.0%
!!! TACGTTTTGAAGAGTCTGAT+TGG - chr1_4:63287613-63287632 Msa0176750:intron 35.0%
!! TGAAGAGTCTGATTGGTTTA+TGG - chr1_4:63287620-63287639 Msa0176750:intron 35.0%
TTGAACTACCAAAGAAGCAA+GGG - chr1_4:63287659-63287678 Msa0176750:intron 35.0%
AGTTGCAGAACAAAGAAATC+TGG - chr1_4:63287682-63287701 Msa0176750:intron 35.0%
AAAGGAACTATAGTAAACGC+AGG - chr1_4:63287958-63287977 Msa0176750:intron 35.0%
!!! TGTTTTGAAAAACGGAAGCA+TGG - chr1_4:63288002-63288021 Msa0176750:intron 35.0%
GATACGATTTATGAAGGATG+CGG - chr1_4:63288242-63288261 Msa0176750:intron 35.0%
ATACGATTTATGAAGGATGC+GGG - chr1_4:63288243-63288262 Msa0176750:intron 35.0%
!! AACTAAAATAGGGATTGGCT+CGG + chr1_4:63288349-63288368 None:intergenic 35.0%
ACCTCAACTAAAATAGGGAT+TGG + chr1_4:63288354-63288373 None:intergenic 35.0%
TTAGTTGAGGTTATACGAAC+CGG - chr1_4:63288363-63288382 Msa0176750:CDS 35.0%
ACTGCAATTGAAACTAGCAA+AGG - chr1_4:63288446-63288465 Msa0176750:CDS 35.0%
TTGAAACTAGCAAAGGAACA+TGG - chr1_4:63288453-63288472 Msa0176750:CDS 35.0%
CTTCAGGGATTATCAGAAAA+TGG - chr1_4:63288489-63288508 Msa0176750:CDS 35.0%
TACGTGTGTATGAAAATGGG+TGG - chr1_4:63283947-63283966 Msa0176750:CDS 40.0%
ACGTGTGTATGAAAATGGGT+GGG - chr1_4:63283948-63283967 Msa0176750:CDS 40.0%
AATCCAAAGGCTATGGTTGT+GGG - chr1_4:63283977-63283996 Msa0176750:CDS 40.0%
!! GCTTTTGAGTCCTTTGTTTG+AGG - chr1_4:63284093-63284112 Msa0176750:CDS 40.0%
AAGGATTGTGATGAGTCTCT+TGG - chr1_4:63284121-63284140 Msa0176750:CDS 40.0%
TTCTCAAGTCCGTGAATCAT+GGG - chr1_4:63284203-63284222 Msa0176750:CDS 40.0%
AAGCTTACTCCCATGATTCA+CGG + chr1_4:63284215-63284234 None:intergenic 40.0%
! TCATGGGAGTAAGCTTTATC+AGG - chr1_4:63284219-63284238 Msa0176750:CDS 40.0%
!! AAAGCGAGTGTTTGGTTCTA+CGG + chr1_4:63284653-63284672 None:intergenic 40.0%
! AAGGTACAGGTAGAAAGCAT+TGG + chr1_4:63284852-63284871 None:intergenic 40.0%
GAACACCCGATTGCTTAAAT+TGG - chr1_4:63285028-63285047 Msa0176750:intron 40.0%
ATGATAGAGACCTGAATGTG+AGG - chr1_4:63285155-63285174 Msa0176750:CDS 40.0%
TGATAGAGACCTGAATGTGA+GGG - chr1_4:63285156-63285175 Msa0176750:CDS 40.0%
ATGTGAGGGATAAGGGAAAA+AGG - chr1_4:63285170-63285189 Msa0176750:CDS 40.0%
TGTGAGGGATAAGGGAAAAA+GGG - chr1_4:63285171-63285190 Msa0176750:CDS 40.0%
TGAGGTGGGTAAGTTGTAAT+GGG - chr1_4:63285293-63285312 Msa0176750:CDS 40.0%
TTGCTAGGACCATTATGGTT+AGG - chr1_4:63285328-63285347 Msa0176750:CDS 40.0%
AGAACGCACACTTCAAATTC+AGG + chr1_4:63285545-63285564 None:intergenic 40.0%
TTCTTCATGCATGACCAATG+TGG - chr1_4:63285665-63285684 Msa0176750:CDS 40.0%
GAAAAAAACTTGCACAGGAC+AGG + chr1_4:63285813-63285832 None:intergenic 40.0%
! TCTAAGGGTGTGTTTGGTAT+AGG - chr1_4:63285882-63285901 Msa0176750:intron 40.0%
GAGCAACTAAGATACCTGTT+TGG + chr1_4:63286690-63286709 None:intergenic 40.0%
TTTACATGTCACAGGCTTTG+CGG - chr1_4:63286739-63286758 Msa0176750:intron 40.0%
ATCAGAGGAAGTTCAAGAAC+AGG - chr1_4:63286848-63286867 Msa0176750:intron 40.0%
!!! GCTGTTTTTGCCAAGGTTAA+AGG - chr1_4:63286926-63286945 Msa0176750:intron 40.0%
TTGATGCTTCCCTTTAACCT+TGG + chr1_4:63286939-63286958 None:intergenic 40.0%
!! CTTTTGAGTATAGCAGGATC+AGG + chr1_4:63287119-63287138 None:intergenic 40.0%
!! GAGAGTCTTTTGAGTATAGC+AGG + chr1_4:63287125-63287144 None:intergenic 40.0%
GTCCACTGAATTACACGAAT+TGG - chr1_4:63287187-63287206 Msa0176750:intron 40.0%
GACCAATTCGTGTAATTCAG+TGG + chr1_4:63287192-63287211 None:intergenic 40.0%
ATAACAAGCAACGGAGAACT+AGG - chr1_4:63287212-63287231 Msa0176750:intron 40.0%
TTCTCATAGGTATCAACCTC+AGG + chr1_4:63287302-63287321 None:intergenic 40.0%
! CGAAAATCATCTGGGATTAC+AGG + chr1_4:63287353-63287372 None:intergenic 40.0%
TAGGACACCGAAAATCATCT+GGG + chr1_4:63287361-63287380 None:intergenic 40.0%
ATAGGACACCGAAAATCATC+TGG + chr1_4:63287362-63287381 None:intergenic 40.0%
GATTGTGGATAATACCTGAC+CGG + chr1_4:63287423-63287442 None:intergenic 40.0%
GTTTCGCACAAAAAGGATTG+TGG + chr1_4:63287438-63287457 None:intergenic 40.0%
TGTGCGAAACATTGTTCTGA+TGG - chr1_4:63287448-63287467 Msa0176750:intron 40.0%
GGTTTATGGTGTGATAGCAA+TGG - chr1_4:63287634-63287653 Msa0176750:intron 40.0%
GTTGAACTACCAAAGAAGCA+AGG - chr1_4:63287658-63287677 Msa0176750:intron 40.0%
TCTGTCACAATCTGAAAGAC+TGG + chr1_4:63287710-63287729 None:intergenic 40.0%
TGATATTGAACAGCAAAGGG+CGG - chr1_4:63287768-63287787 Msa0176750:intron 40.0%
TCGGTTATCTGCATTTCTCT+TGG + chr1_4:63287818-63287837 None:intergenic 40.0%
TCCATCAACGAGAGTAACAA+AGG - chr1_4:63287940-63287959 Msa0176750:intron 40.0%
TCCTTTGTTACTCTCGTTGA+TGG + chr1_4:63287944-63287963 None:intergenic 40.0%
! TTTGAAAAACGGAAGCATGG+AGG - chr1_4:63288005-63288024 Msa0176750:intron 40.0%
GACGAGAACAAAGTTGCAAT+AGG - chr1_4:63288072-63288091 Msa0176750:intron 40.0%
TAACTTTATAAGAGCCGGGA+TGG + chr1_4:63288109-63288128 None:intergenic 40.0%
AAAGCTAGAGCTGTTAAAGC+CGG - chr1_4:63288204-63288223 Msa0176750:intron 40.0%
TATCAAAGGAGCAACTATCC+CGG + chr1_4:63288226-63288245 None:intergenic 40.0%
GCTATAATGACAATCCTTGC+AGG - chr1_4:63288291-63288310 Msa0176750:CDS 40.0%
!!! GCCAATCCCTATTTTAGTTG+AGG - chr1_4:63288350-63288369 Msa0176750:CDS 40.0%
!! TGTTTTGTGGTTGGTATGCA+CGG - chr1_4:63288416-63288435 Msa0176750:CDS 40.0%
GATAGAGCTAAGAGAAAAGC+TGG - chr1_4:63288516-63288535 Msa0176750:CDS 40.0%
TGATGGAGAATACCCAGATG+AGG + chr1_4:63283867-63283886 None:intergenic 45.0%
GAATCCAAAGGCTATGGTTG+TGG - chr1_4:63283976-63283995 Msa0176750:CDS 45.0%
! TGAATCTTTGAGGGCTGCTT+TGG - chr1_4:63284165-63284184 Msa0176750:CDS 45.0%
CTTCTCAAGTCCGTGAATCA+TGG - chr1_4:63284202-63284221 Msa0176750:CDS 45.0%
! CCATATGCAGAGAAAGGTAC+AGG + chr1_4:63284865-63284884 None:intergenic 45.0%
CCTGTACCTTTCTCTGCATA+TGG - chr1_4:63284862-63284881 Msa0176750:CDS 45.0%
AGACCTGAATGTGAGGGATA+AGG - chr1_4:63285162-63285181 Msa0176750:CDS 45.0%
GACCTGAATGTGAGGGATAA+GGG - chr1_4:63285163-63285182 Msa0176750:CDS 45.0%
TTCCCTTATCCCTCACATTC+AGG + chr1_4:63285168-63285187 None:intergenic 45.0%
GTGAGGGATAAGGGAAAAAG+GGG - chr1_4:63285172-63285191 Msa0176750:CDS 45.0%
GTGAGGTGGGTAAGTTGTAA+TGG - chr1_4:63285292-63285311 Msa0176750:CDS 45.0%
GGGAATGCGAGATTATTGCT+AGG - chr1_4:63285313-63285332 Msa0176750:CDS 45.0%
! TTTGAAGGAGTTTTGCTCGG+TGG - chr1_4:63285373-63285392 Msa0176750:CDS 45.0%
! TTGAAGGAGTTTTGCTCGGT+GGG - chr1_4:63285374-63285393 Msa0176750:CDS 45.0%
CAGGCAAGCAACACTTAAGT+TGG - chr1_4:63285511-63285530 Msa0176750:intron 45.0%
CTGCAAAGTAAACGGTGCAT+AGG - chr1_4:63285712-63285731 Msa0176750:CDS 45.0%
CCTTCTACTCCATTTCTTCG+CGG - chr1_4:63286458-63286477 Msa0176750:intron 45.0%
!! TCTTTGGAACCGCGAAGAAA+TGG + chr1_4:63286470-63286489 None:intergenic 45.0%
GACGTAGGTCCCACAATATT+TGG - chr1_4:63286501-63286520 Msa0176750:intron 45.0%
GATAAGCTCCTTCTCCTGTT+TGG + chr1_4:63286553-63286572 None:intergenic 45.0%
GAAAGAGGGAAGAGAGAAGT+TGG + chr1_4:63286581-63286600 None:intergenic 45.0%
GATCCTGTAATCGTCTCAAC+CGG - chr1_4:63287401-63287420 Msa0176750:intron 45.0%
CTGCTTCGGCAATACATACT+CGG + chr1_4:63287837-63287856 None:intergenic 45.0%
GACAACAAGTCTACGAGAAG+CGG + chr1_4:63287868-63287887 None:intergenic 45.0%
AAAGTTGCAATAGGTGCAGC+AGG - chr1_4:63288081-63288100 Msa0176750:intron 45.0%
!! CTTTGTGAAGGTACTCCAAG+AGG - chr1_4:63288129-63288148 Msa0176750:intron 45.0%
!!! GCTGCATCTTTTTTGCCTCT+TGG + chr1_4:63288147-63288166 None:intergenic 45.0%
AAGCTAGAGCTGTTAAAGCC+GGG - chr1_4:63288205-63288224 Msa0176750:intron 45.0%
TTGCTGTCCTTCCTTCATGA+TGG + chr1_4:63288317-63288336 None:intergenic 45.0%
CATGAAGGAAGGACAGCAAT+TGG - chr1_4:63288318-63288337 Msa0176750:CDS 45.0%
AAACAGCAGCAGCATTCTCA+CGG + chr1_4:63288401-63288420 None:intergenic 45.0%
!!! AGAATGCTGCTGCTGTTTTG+TGG - chr1_4:63288403-63288422 Msa0176750:CDS 45.0%
!! GTTTTGTGGTTGGTATGCAC+GGG - chr1_4:63288417-63288436 Msa0176750:CDS 45.0%
AACTGTTGCAGCGAATCGAA+GGG - chr1_4:63288550-63288569 Msa0176750:exon 45.0%
AAAGTTACACTCGAGAGGCT+AGG + chr1_4:63288595-63288614 None:intergenic 45.0%
!!! TTTAAAATTTTATAATTTAG+TGG - chr1_4:63286210-63286229 Msa0176750:intron 5.0%
!!! TTAAAATTTTATAATTTAGT+GGG - chr1_4:63286211-63286230 Msa0176750:intron 5.0%
!! TTTATTTATTATAATATAAG+AGG - chr1_4:63286293-63286312 Msa0176750:intron 5.0%
GAGCGAGAATCCAAAGGCTA+TGG - chr1_4:63283970-63283989 Msa0176750:CDS 50.0%
! CAGAGAGATTTCTGGGTTGC+CGG - chr1_4:63284018-63284037 Msa0176750:CDS 50.0%
TCTGTAAGTTGCGGCGATTC+AGG - chr1_4:63285492-63285511 Msa0176750:intron 50.0%
CCGCGAAGAAATGGAGTAGA+AGG + chr1_4:63286461-63286480 None:intergenic 50.0%
!!! GCAAAGCGCTGTTTTTGCCA+AGG - chr1_4:63286919-63286938 Msa0176750:intron 50.0%
TCTCAGAGAAGTTGCACCTG+AGG - chr1_4:63287141-63287160 Msa0176750:intron 50.0%
! CATCTGGGATTACAGGAGAC+CGG + chr1_4:63287346-63287365 None:intergenic 50.0%
TGACCGGTTGAGACGATTAC+AGG + chr1_4:63287407-63287426 None:intergenic 50.0%
TGTAATCGTCTCAACCGGTC+AGG - chr1_4:63287406-63287425 Msa0176750:intron 50.0%
!!! TGTCTGCTGTGTTTTAGGGC+AGG + chr1_4:63287566-63287585 None:intergenic 50.0%
CTGCAACTCCCTTGCTTCTT+TGG + chr1_4:63287670-63287689 None:intergenic 50.0%
CATTTCTCTTGGCCAGCAAC+CGG + chr1_4:63287807-63287826 None:intergenic 50.0%
CGAGTATGTATTGCCGAAGC+AGG - chr1_4:63287835-63287854 Msa0176750:intron 50.0%
AAGCGGTATTGCTCCTGCTT+CGG + chr1_4:63287851-63287870 None:intergenic 50.0%
TTCCACAGATCCTCGAACTC+AGG - chr1_4:63287888-63287907 Msa0176750:intron 50.0%
CATGGAGGCAAGAGAAAACG+CGG - chr1_4:63288020-63288039 Msa0176750:intron 50.0%
CGATTTATGAAGGATGCGGG+CGG - chr1_4:63288246-63288265 Msa0176750:intron 50.0%
ATCCTTGCAGGCCATCATGA+AGG - chr1_4:63288303-63288322 Msa0176750:CDS 50.0%
TTCCTTCATGATGGCCTGCA+AGG + chr1_4:63288308-63288327 None:intergenic 50.0%
TTGCAGGCCATCATGAAGGA+AGG - chr1_4:63288307-63288326 Msa0176750:CDS 50.0%
AGGAAGGACAGCAATTGGTC+AGG - chr1_4:63288323-63288342 Msa0176750:CDS 50.0%
!!! TGCTGCTGCTGTTTTGTGGT+TGG - chr1_4:63288407-63288426 Msa0176750:CDS 50.0%
!! TGGAGCAGAAGAAGCACTTC+AGG - chr1_4:63288473-63288492 Msa0176750:CDS 50.0%
!! GGAGCAGAAGAAGCACTTCA+GGG - chr1_4:63288474-63288493 Msa0176750:CDS 50.0%
GAACTGTTGCAGCGAATCGA+AGG - chr1_4:63288549-63288568 Msa0176750:exon 50.0%
ACTGTTGCAGCGAATCGAAG+GGG - chr1_4:63288551-63288570 Msa0176750:exon 50.0%
CGACCCACAACCATAGCCTT+TGG + chr1_4:63283983-63284002 None:intergenic 55.0%
GGCTATGGTTGTGGGTCGTT+TGG - chr1_4:63283985-63284004 Msa0176750:CDS 55.0%
!! AGTTTTGCTCGGTGGGCGTT+AGG - chr1_4:63285381-63285400 Msa0176750:CDS 55.0%
CACAGGACAGGCCTGATTTC+AGG + chr1_4:63285801-63285820 None:intergenic 55.0%
ACATGTCACAGGCTTTGCGG+AGG - chr1_4:63286742-63286761 Msa0176750:intron 55.0%
CGTGCTCGCAGAAAATCCTG+AGG - chr1_4:63287283-63287302 Msa0176750:intron 55.0%
CTCCTGAGTTCGAGGATCTG+TGG + chr1_4:63287893-63287912 None:intergenic 55.0%
! TCCTCGAACTCAGGAGCATG+CGG - chr1_4:63287897-63287916 Msa0176750:intron 55.0%
TTTATGAAGGATGCGGGCGG+TGG - chr1_4:63288249-63288268 Msa0176750:intron 55.0%
TTATGAAGGATGCGGGCGGT+GGG - chr1_4:63288250-63288269 Msa0176750:intron 55.0%
GGGTGGGAGCGAGAATCCAA+AGG - chr1_4:63283964-63283983 Msa0176750:CDS 60.0%
ACCGCATGCTCCTGAGTTCG+AGG + chr1_4:63287901-63287920 None:intergenic 60.0%
CTCACGGTTGCGTGGTGATC+CGG + chr1_4:63288385-63288404 None:intergenic 60.0%
GCAGCATTCTCACGGTTGCG+TGG + chr1_4:63288393-63288412 None:intergenic 60.0%
GTTGCAGCGAATCGAAGGGG+AGG - chr1_4:63288554-63288573 Msa0176750:exon 60.0%
GAACAGCAAAGGGCGGCTGC+TGG - chr1_4:63287775-63287794 Msa0176750:intron 65.0%
TGCTGGTGAGCTCCGGTTGC+TGG - chr1_4:63287792-63287811 Msa0176750:intron 65.0%
AGGTGCAGCAGGAGCCATCC+CGG - chr1_4:63288092-63288111 Msa0176750:intron 65.0%
GAAGGATGCGGGCGGTGGGA+TGG - chr1_4:63288254-63288273 Msa0176750:intron 70.0%
GGGCGGCTGCTGGTGAGCTC+CGG - chr1_4:63287785-63287804 Msa0176750:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 63283697 63288817 63283697 ID=Msa0176750;Name=Msa0176750
chr1_4 mRNA 63283697 63288817 63283697 ID=Msa0176750-mRNA-1;Parent=Msa0176750;Name=Msa0176750-mRNA-1;_AED=0.04;_eAED=0.04;_QI=259|1|1|1|1|1|4|221|632
chr1_4 exon 63283697 63285000 63283697 ID=Msa0176750-mRNA-1:exon:20426;Parent=Msa0176750-mRNA-1
chr1_4 exon 63285087 63285500 63285087 ID=Msa0176750-mRNA-1:exon:20425;Parent=Msa0176750-mRNA-1
chr1_4 exon 63285645 63285761 63285645 ID=Msa0176750-mRNA-1:exon:20424;Parent=Msa0176750-mRNA-1
chr1_4 exon 63288274 63288817 63288274 ID=Msa0176750-mRNA-1:exon:20423;Parent=Msa0176750-mRNA-1
chr1_4 five_prime_UTR 63288559 63288817 63288559 ID=Msa0176750-mRNA-1:five_prime_utr;Parent=Msa0176750-mRNA-1
chr1_4 CDS 63288274 63288558 63288274 ID=Msa0176750-mRNA-1:cds;Parent=Msa0176750-mRNA-1
chr1_4 CDS 63285645 63285761 63285645 ID=Msa0176750-mRNA-1:cds;Parent=Msa0176750-mRNA-1
chr1_4 CDS 63285087 63285500 63285087 ID=Msa0176750-mRNA-1:cds;Parent=Msa0176750-mRNA-1
chr1_4 CDS 63283918 63285000 63283918 ID=Msa0176750-mRNA-1:cds;Parent=Msa0176750-mRNA-1
chr1_4 three_prime_UTR 63283697 63283917 63283697 ID=Msa0176750-mRNA-1:three_prime_utr;Parent=Msa0176750-mRNA-1
Gene Sequence

>Msa0176750

ATGAAAATGGGTGGGAGCGAGAATCCAAAGGCTATGGTTGTGGGTCGTTTGGCTGATTCAATCAGAGAGATTTCTGGGTTGCCGGAATGTCAAAACGTTTGTAAGAAGATGTATGGGAATTTGATTCGTAGGGTGAAGCTTTTGAGTCCTTTGTTTGAGGAATTGAAGGATTGTGATGAGTCTCTTGGTGATCAAGAGATTGAAGCTTTTGAATCTTTGAGGGCTGCTTTGGATTTGACTATGATTCTTCTCAAGTCCGTGAATCATGGGAGTAAGCTTTATCAGGCTTTGCGGAGGAATGATACCGCAGATAAGTTCCAACAAATAACCGAAAAAATTGAAGCTGCATTGAGTGATATTTCATACAACAAACTTGAGATATCAGAGGAAGTTCAAGAACAGATTGAACTAGTGCACGCTCAGTTCAAAAGAGCCAAAGCTCAAACAGAATTTGCTGATTTACAACTAGACTTGGATATAGCAGTAGCACAGAAAGATAAAGACCCTGATCCTGCTATACTCAAAAGACTCTCAGAGAAGTTGCACCTGAGGACTATGAATGATCTAAAGAAAGAGTCCACTGAATTACACGAATTGGTCATAACAAGCAACGGAGAACTAGGAGACAGTTTTGAAACCGTCTCATCCCTTCTTAGAAAACTGAAAGACTGCGTGCTCGCAGAAAATCCTGAGGTTGATACCTATGAGAACGAGAATGTTTCAATTAAGCACCGGTCTCCTGTAATCCCAGATGATTTTCGGTGTCCTATATCTCTCGAACTGATGAAAGATCCTGTAATCGTCTCAACCGGTCAGACATATGAAAGATCCTGCATTCAAAAATGGCTTGATGCTGGTCACAGAACCTGCCCTAAAACACAGCAGACACTTTTGCATACAGCCCTTACTCCTAACTACGTTTTGAAGAGTCTGATTGGTTTATGGTGTGATAGCAATGGTGTTGAACTACCAAAGAAGCAAGGGAGTTGCAGAACAAAGAAATCTGGAACCAGTCTTTCAGATTGTGACAGAACTGCTATCAAAGCTTTATTGGATAAGCTAACAAGTAATGATATTGAACAGCAAAGGGCGGCTGCTGGTGAGCTCCGGTTGCTGGCCAAGAGAAATGCAGATAACCGAGTATGTATTGCCGAAGCAGGAGCAATACCGCTTCTCGTAGACTTGTTGTCTTCCACAGATCCTCGAACTCAGGAGCATGCGGTTACAGCACTTCTGAATCTTTCCATCAACGAGAGTAACAAAGGAACTATAGTAAACGCAGGAGCTATACCAGATATTGTAGATGTTTTGAAAAACGGAAGCATGGAGGCAAGAGAAAACGCGGCTGCGACTCTCTTTAGTTTATCAGTTCTTGACGAGAACAAAGTTGCAATAGGTGCAGCAGGAGCCATCCCGGCTCTTATAAAGTTACTTTGTGAAGGTACTCCAAGAGGCAAAAAAGATGCAGCTACTGCTATATTTAATCTATGTATTTATCAAGGAAACAAAGCTAGAGCTGTTAAAGCCGGGATAGTTGCTCCTTTGATACGATTTATGAAGGATGCGGGCGGTGGGATGGTTGACGAAGCACTAGCTATAATGACAATCCTTGCAGGCCATCATGAAGGAAGGACAGCAATTGGTCAGGCCGAGCCAATCCCTATTTTAGTTGAGGTTATACGAACCGGATCACCACGCAACCGTGAGAATGCTGCTGCTGTTTTGTGGTTGGTATGCACGGGAGATCTACTGCAATTGAAACTAGCAAAGGAACATGGAGCAGAAGAAGCACTTCAGGGATTATCAGAAAATGGAACTGATAGAGCTAAGAGAAAAGCTGGAAGTATATTAGAACTGTTGCAGCGAATCGAAGGGGAGGATAGTTTGCAAAATACCTAG
Protein sequence

>Msa0176750

MKMGGSENPKAMVVGRLADSIREISGLPECQNVCKKMYGNLIRRVKLLSPLFEELKDCDESLGDQEIEAFESLRAALDLTMILLKSVNHGSKLYQALRRNDTADKFQQITEKIEAALSDISYNKLEISEEVQEQIELVHAQFKRAKAQTEFADLQLDLDIAVAQKDKDPDPAILKRLSEKLHLRTMNDLKKESTELHELVITSNGELGDSFETVSSLLRKLKDCVLAENPEVDTYENENVSIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHRTCPKTQQTLLHTALTPNYVLKSLIGLWCDSNGVELPKKQGSCRTKKSGTSLSDCDRTAIKALLDKLTSNDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVDLLSSTDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVLDENKVAIGAAGAIPALIKLLCEGTPRGKKDAATAIFNLCIYQGNKARAVKAGIVAPLIRFMKDAGGGMVDEALAIMTILAGHHEGRTAIGQAEPIPILVEVIRTGSPRNRENAAAVLWLVCTGDLLQLKLAKEHGAEEALQGLSENGTDRAKRKAGSILELLQRIEGEDSLQNT*