Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423540 | sp|Q941R4|GONS1_ARATH | 78.107 | 338 | 69 | 1 | 3 | 340 | 1 | 333 | 0.0 | 517 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423540 | G7JBL1 | 99.415 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 0.0 | 686 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa1423540 | 0.811020 | 8.627446e-51 | -8.615850e-47 |
| Msa0004480 | Msa1423540 | 0.814755 | 1.310904e-51 | -8.615850e-47 |
| Msa0006060 | Msa1423540 | 0.806305 | 8.773524e-50 | -8.615850e-47 |
| Msa0015090 | Msa1423540 | 0.823446 | 1.379482e-53 | -8.615850e-47 |
| Msa0026630 | Msa1423540 | 0.823098 | 1.662827e-53 | -8.615850e-47 |
| Msa0043850 | Msa1423540 | 0.800583 | 1.346642e-48 | -8.615850e-47 |
| Msa0046110 | Msa1423540 | -0.805855 | 1.091370e-49 | -8.615850e-47 |
| Msa0049750 | Msa1423540 | 0.821656 | 3.595732e-53 | -8.615850e-47 |
| Msa0054920 | Msa1423540 | 0.809621 | 1.728892e-50 | -8.615850e-47 |
| Msa0071090 | Msa1423540 | 0.800530 | 1.380497e-48 | -8.615850e-47 |
| Msa0071250 | Msa1423540 | 0.801798 | 7.596290e-49 | -8.615850e-47 |
| Msa0082420 | Msa1423540 | 0.822939 | 1.810914e-53 | -8.615850e-47 |
| Msa0090510 | Msa1423540 | 0.812969 | 3.243604e-51 | -8.615850e-47 |
| Msa0094710 | Msa1423540 | 0.803788 | 2.949373e-49 | -8.615850e-47 |
| Msa0098290 | Msa1423540 | 0.849326 | 3.474193e-60 | -8.615850e-47 |
| Msa0117520 | Msa1423540 | 0.827442 | 1.560861e-54 | -8.615850e-47 |
| Msa1352660 | Msa1423540 | 0.802022 | 6.833349e-49 | -8.615850e-47 |
| Msa1355890 | Msa1423540 | 0.800150 | 1.649188e-48 | -8.615850e-47 |
| Msa1359400 | Msa1423540 | 0.811933 | 5.464010e-51 | -8.615850e-47 |
| Msa1368360 | Msa1423540 | 0.832461 | 9.330502e-56 | -8.615850e-47 |
| Msa1369920 | Msa1423540 | -0.820563 | 6.421748e-53 | -8.615850e-47 |
| Msa1382020 | Msa1423540 | 0.816898 | 4.360652e-52 | -8.615850e-47 |
| Msa1386890 | Msa1423540 | 0.809240 | 2.086270e-50 | -8.615850e-47 |
| Msa1400930 | Msa1423540 | 0.809024 | 2.321726e-50 | -8.615850e-47 |
| Msa1412130 | Msa1423540 | 0.813749 | 2.186741e-51 | -8.615850e-47 |
| Msa1421210 | Msa1423540 | 0.822209 | 2.676977e-53 | -8.615850e-47 |
| Msa1422810 | Msa1423540 | 0.805152 | 1.532332e-49 | -8.615850e-47 |
| Msa1423540 | Msa1428780 | 0.801118 | 1.047207e-48 | -8.615850e-47 |
| Msa1423540 | Msa1437330 | 0.800326 | 1.519136e-48 | -8.615850e-47 |
| Msa1423540 | Msa1438840 | 0.828199 | 1.026763e-54 | -8.615850e-47 |
| Msa1423540 | Msa1440790 | 0.822601 | 2.170733e-53 | -8.615850e-47 |
| Msa1423540 | Msa1443620 | 0.801617 | 8.273378e-49 | -8.615850e-47 |
| Msa0610180 | Msa1423540 | 0.804665 | 1.937437e-49 | -8.615850e-47 |
| Msa0628030 | Msa1423540 | 0.807220 | 5.621444e-50 | -8.615850e-47 |
| Msa0631320 | Msa1423540 | 0.810345 | 1.207416e-50 | -8.615850e-47 |
| Msa0641130 | Msa1423540 | 0.817604 | 3.024769e-52 | -8.615850e-47 |
| Msa0645530 | Msa1423540 | 0.808370 | 3.202502e-50 | -8.615850e-47 |
| Msa0654900 | Msa1423540 | 0.816786 | 4.622063e-52 | -8.615850e-47 |
| Msa0657120 | Msa1423540 | 0.811916 | 5.510291e-51 | -8.615850e-47 |
| Msa0663490 | Msa1423540 | 0.808169 | 3.534891e-50 | -8.615850e-47 |
| Msa0672550 | Msa1423540 | 0.814389 | 1.579703e-51 | -8.615850e-47 |
| Msa0685090 | Msa1423540 | 0.805802 | 1.119663e-49 | -8.615850e-47 |
| Msa0697680 | Msa1423540 | 0.814103 | 1.826942e-51 | -8.615850e-47 |
| Msa0698460 | Msa1423540 | 0.811868 | 5.643400e-51 | -8.615850e-47 |
| Msa0701100 | Msa1423540 | 0.815979 | 7.004507e-52 | -8.615850e-47 |
| Msa0702370 | Msa1423540 | 0.809832 | 1.556977e-50 | -8.615850e-47 |
| Msa0702550 | Msa1423540 | 0.800370 | 1.488064e-48 | -8.615850e-47 |
| Msa0703910 | Msa1423540 | 0.808506 | 2.995844e-50 | -8.615850e-47 |
| Msa0705990 | Msa1423540 | 0.816464 | 5.457101e-52 | -8.615850e-47 |
| Msa0709120 | Msa1423540 | 0.804426 | 2.172131e-49 | -8.615850e-47 |
| Msa0720640 | Msa1423540 | 0.805832 | 1.103408e-49 | -8.615850e-47 |
| Msa0724370 | Msa1423540 | 0.812429 | 4.259689e-51 | -8.615850e-47 |
| Msa0745250 | Msa1423540 | -0.813821 | 2.108302e-51 | -8.615850e-47 |
| Msa0763920 | Msa1423540 | 0.814406 | 1.565587e-51 | -8.615850e-47 |
| Msa0764920 | Msa1423540 | 0.820055 | 8.394776e-53 | -8.615850e-47 |
| Msa0771950 | Msa1423540 | 0.800636 | 1.313563e-48 | -8.615850e-47 |
| Msa0775560 | Msa1423540 | 0.810204 | 1.294994e-50 | -8.615850e-47 |
| Msa0795340 | Msa1423540 | 0.805333 | 1.404063e-49 | -8.615850e-47 |
| Msa0812530 | Msa1423540 | 0.806686 | 7.293692e-50 | -8.615850e-47 |
| Msa0812950 | Msa1423540 | 0.843889 | 1.061273e-58 | -8.615850e-47 |
| Msa0823440 | Msa1423540 | 0.801456 | 8.929308e-49 | -8.615850e-47 |
| Msa0826150 | Msa1423540 | 0.806520 | 7.905805e-50 | -8.615850e-47 |
| Msa0828200 | Msa1423540 | 0.814900 | 1.217187e-51 | -8.615850e-47 |
| Msa0841780 | Msa1423540 | 0.808277 | 3.352023e-50 | -8.615850e-47 |
| Msa0138020 | Msa1423540 | 0.818302 | 2.104307e-52 | -8.615850e-47 |
| Msa0138900 | Msa1423540 | 0.826375 | 2.807704e-54 | -8.615850e-47 |
| Msa0139670 | Msa1423540 | 0.803561 | 3.286817e-49 | -8.615850e-47 |
| Msa0142500 | Msa1423540 | 0.811952 | 5.412951e-51 | -8.615850e-47 |
| Msa0144530 | Msa1423540 | 0.816561 | 5.190066e-52 | -8.615850e-47 |
| Msa0152560 | Msa1423540 | 0.814715 | 1.337623e-51 | -8.615850e-47 |
| Msa0160960 | Msa1423540 | 0.831800 | 1.359070e-55 | -8.615850e-47 |
| Msa0176750 | Msa1423540 | 0.800130 | 1.664628e-48 | -8.615850e-47 |
| Msa0202410 | Msa1423540 | 0.802298 | 5.995212e-49 | -8.615850e-47 |
| Msa0224130 | Msa1423540 | 0.802792 | 4.742559e-49 | -8.615850e-47 |
| Msa0227360 | Msa1423540 | 0.826990 | 2.003215e-54 | -8.615850e-47 |
| Msa0232020 | Msa1423540 | 0.803326 | 3.677781e-49 | -8.615850e-47 |
| Msa0233370 | Msa1423540 | 0.813496 | 2.485719e-51 | -8.615850e-47 |
| Msa1229480 | Msa1423540 | 0.829962 | 3.837546e-55 | -8.615850e-47 |
| Msa1236110 | Msa1423540 | -0.842452 | 2.563801e-58 | -8.615850e-47 |
| Msa1239400 | Msa1423540 | 0.804890 | 1.738055e-49 | -8.615850e-47 |
| Msa1244160 | Msa1423540 | 0.801357 | 9.353135e-49 | -8.615850e-47 |
| Msa1259860 | Msa1423540 | 0.810291 | 1.239994e-50 | -8.615850e-47 |
| Msa1260060 | Msa1423540 | 0.813896 | 2.029327e-51 | -8.615850e-47 |
| Msa1260680 | Msa1423540 | 0.824098 | 9.702283e-54 | -8.615850e-47 |
| Msa1270660 | Msa1423540 | 0.817484 | 3.220126e-52 | -8.615850e-47 |
| Msa1272010 | Msa1423540 | 0.810012 | 1.423844e-50 | -8.615850e-47 |
| Msa1280170 | Msa1423540 | 0.803446 | 3.472793e-49 | -8.615850e-47 |
| Msa1285250 | Msa1423540 | 0.806673 | 7.336558e-50 | -8.615850e-47 |
| Msa1307160 | Msa1423540 | 0.814005 | 1.920430e-51 | -8.615850e-47 |
| Msa1307180 | Msa1423540 | 0.833830 | 4.257239e-56 | -8.615850e-47 |
| Msa1309760 | Msa1423540 | 0.885796 | 5.968328e-72 | -8.615850e-47 |
| Msa1312440 | Msa1423540 | 0.807861 | 4.110044e-50 | -8.615850e-47 |
| Msa1316360 | Msa1423540 | 0.843627 | 1.247301e-58 | -8.615850e-47 |
| Msa1335230 | Msa1423540 | 0.812292 | 4.563007e-51 | -8.615850e-47 |
| Msa0364790 | Msa1423540 | 0.831409 | 1.697275e-55 | -8.615850e-47 |
| Msa0365950 | Msa1423540 | 0.809545 | 1.794698e-50 | -8.615850e-47 |
| Msa0378010 | Msa1423540 | 0.847152 | 1.385217e-59 | -8.615850e-47 |
| Msa0382310 | Msa1423540 | 0.803010 | 4.275603e-49 | -8.615850e-47 |
| Msa0388730 | Msa1423540 | 0.826143 | 3.188375e-54 | -8.615850e-47 |
| Msa0403490 | Msa1423540 | 0.803599 | 3.228040e-49 | -8.615850e-47 |
| Msa0414140 | Msa1423540 | 0.809372 | 1.955368e-50 | -8.615850e-47 |
| Msa0427580 | Msa1423540 | 0.933871 | 9.678332e-96 | -8.615850e-47 |
| Msa0428200 | Msa1423540 | 0.826309 | 2.911362e-54 | -8.615850e-47 |
| Msa0430060 | Msa1423540 | 0.849359 | 3.401993e-60 | -8.615850e-47 |
| Msa0430150 | Msa1423540 | 0.854053 | 1.590112e-61 | -8.615850e-47 |
| Msa0481030 | Msa1423540 | 0.846446 | 2.161418e-59 | -8.615850e-47 |
| Msa0481280 | Msa1423540 | 0.814673 | 1.366456e-51 | -8.615850e-47 |
| Msa0992580 | Msa1423540 | 0.816202 | 6.243402e-52 | -8.615850e-47 |
| Msa0992600 | Msa1423540 | 0.805625 | 1.219307e-49 | -8.615850e-47 |
| Msa1008390 | Msa1423540 | 0.811768 | 5.934226e-51 | -8.615850e-47 |
| Msa1011250 | Msa1423540 | 0.807050 | 6.108106e-50 | -8.615850e-47 |
| Msa1013070 | Msa1423540 | 0.818374 | 2.026417e-52 | -8.615850e-47 |
| Msa1016960 | Msa1423540 | 0.807145 | 5.832229e-50 | -8.615850e-47 |
| Msa1023310 | Msa1423540 | 0.821810 | 3.311843e-53 | -8.615850e-47 |
| Msa1034590 | Msa1423540 | 0.819667 | 1.029649e-52 | -8.615850e-47 |
| Msa1054510 | Msa1423540 | 0.813049 | 3.115396e-51 | -8.615850e-47 |
| Msa1062040 | Msa1423540 | 0.828505 | 8.663043e-55 | -8.615850e-47 |
| Msa1071320 | Msa1423540 | 0.800100 | 1.688354e-48 | -8.615850e-47 |
| Msa1074350 | Msa1423540 | 0.806594 | 7.625451e-50 | -8.615850e-47 |
| Msa1093100 | Msa1423540 | 0.814265 | 1.682099e-51 | -8.615850e-47 |
| Msa0249310 | Msa1423540 | 0.829192 | 5.904879e-55 | -8.615850e-47 |
| Msa0262370 | Msa1423540 | 0.809910 | 1.497890e-50 | -8.615850e-47 |
| Msa0265270 | Msa1423540 | 0.808186 | 3.504980e-50 | -8.615850e-47 |
| Msa0287790 | Msa1423540 | 0.819524 | 1.110346e-52 | -8.615850e-47 |
| Msa0296050 | Msa1423540 | -0.838431 | 2.888423e-57 | -8.615850e-47 |
| Msa0302840 | Msa1423540 | 0.830283 | 3.204146e-55 | -8.615850e-47 |
| Msa0311720 | Msa1423540 | 0.802938 | 4.424205e-49 | -8.615850e-47 |
| Msa0319020 | Msa1423540 | 0.808835 | 2.548064e-50 | -8.615850e-47 |
| Msa0321690 | Msa1423540 | 0.810597 | 1.065240e-50 | -8.615850e-47 |
| Msa0333970 | Msa1423540 | -0.839116 | 1.920957e-57 | -8.615850e-47 |
| Msa0337590 | Msa1423540 | 0.801501 | 8.741197e-49 | -8.615850e-47 |
| Msa1107200 | Msa1423540 | 0.860026 | 2.751739e-63 | -8.615850e-47 |
| Msa1109810 | Msa1423540 | 0.833732 | 4.502672e-56 | -8.615850e-47 |
| Msa1111610 | Msa1423540 | 0.805935 | 1.049577e-49 | -8.615850e-47 |
| Msa1128270 | Msa1423540 | 0.831524 | 1.590088e-55 | -8.615850e-47 |
| Msa1144040 | Msa1423540 | 0.820939 | 5.261225e-53 | -8.615850e-47 |
| Msa1150780 | Msa1423540 | 0.857001 | 2.196689e-62 | -8.615850e-47 |
| Msa1166250 | Msa1423540 | 0.803977 | 2.694498e-49 | -8.615850e-47 |
| Msa1175200 | Msa1423540 | 0.808507 | 2.993635e-50 | -8.615850e-47 |
| Msa1183140 | Msa1423540 | 0.892634 | 1.324833e-74 | -8.615850e-47 |
| Msa1187590 | Msa1423540 | 0.804911 | 1.720629e-49 | -8.615850e-47 |
| Msa1208370 | Msa1423540 | 0.821575 | 3.753331e-53 | -8.615850e-47 |
| Msa1208380 | Msa1423540 | 0.802066 | 6.690908e-49 | -8.615850e-47 |
| Msa1208450 | Msa1423540 | -0.801646 | 8.163459e-49 | -8.615850e-47 |
| Msa1208990 | Msa1423540 | 0.811272 | 7.607982e-51 | -8.615850e-47 |
| Msa1212050 | Msa1423540 | 0.802422 | 5.653972e-49 | -8.615850e-47 |
| Msa1212130 | Msa1423540 | 0.800274 | 1.556669e-48 | -8.615850e-47 |
| Msa0496970 | Msa1423540 | 0.822726 | 2.030701e-53 | -8.615850e-47 |
| Msa0500400 | Msa1423540 | 0.807106 | 5.944270e-50 | -8.615850e-47 |
| Msa0500470 | Msa1423540 | 0.847019 | 1.506959e-59 | -8.615850e-47 |
| Msa0518170 | Msa1423540 | 0.929716 | 4.659885e-93 | -8.615850e-47 |
| Msa0519160 | Msa1423540 | 0.867369 | 1.440274e-65 | -8.615850e-47 |
| Msa0520270 | Msa1423540 | 0.811371 | 7.238937e-51 | -8.615850e-47 |
| Msa0534870 | Msa1423540 | 0.813170 | 2.930809e-51 | -8.615850e-47 |
| Msa0545050 | Msa1423540 | 0.815068 | 1.117032e-51 | -8.615850e-47 |
| Msa0584600 | Msa1423540 | 0.805418 | 1.347811e-49 | -8.615850e-47 |
| Msa0600590 | Msa1423540 | 0.815600 | 8.508391e-52 | -8.615850e-47 |
| Msa0844110 | Msa1423540 | 0.823287 | 1.502445e-53 | -8.615850e-47 |
| Msa0844610 | Msa1423540 | 0.804658 | 1.943710e-49 | -8.615850e-47 |
| Msa0853440 | Msa1423540 | 0.821619 | 3.667665e-53 | -8.615850e-47 |
| Msa0861570 | Msa1423540 | 0.803521 | 3.350679e-49 | -8.615850e-47 |
| Msa0871430 | Msa1423540 | 0.813633 | 2.318424e-51 | -8.615850e-47 |
| Msa0921420 | Msa1423540 | 0.828637 | 8.046545e-55 | -8.615850e-47 |
| Msa0936640 | Msa1423540 | 0.824208 | 9.144101e-54 | -8.615850e-47 |
| Msa0945130 | Msa1423540 | 0.807965 | 3.905258e-50 | -8.615850e-47 |
| Msa0954840 | Msa1423540 | 0.821318 | 4.304092e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423540 | MtrunA17_Chr3g0130221 | 99.415 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 0.0 | 686 |
| Msa1423540 | MtrunA17_Chr3g0104471 | 62.048 | 332 | 114 | 2 | 17 | 336 | 67 | 398 | 1.78e-148 | 424 |
| Msa1423540 | MtrunA17_Chr5g0393851 | 86.486 | 74 | 5 | 1 | 264 | 337 | 1 | 69 | 7.32e-35 | 122 |
| Msa1423540 | MtrunA17_Chr3g0114581 | 23.432 | 303 | 216 | 6 | 39 | 335 | 14 | 306 | 9.60e-16 | 77.0 |
| Msa1423540 | MtrunA17_Chr1g0160071 | 22.772 | 303 | 218 | 5 | 39 | 335 | 13 | 305 | 1.17e-15 | 77.0 |
| Msa1423540 | MtrunA17_Chr2g0317521 | 23.647 | 351 | 238 | 5 | 3 | 337 | 1 | 337 | 4.07e-14 | 72.4 |
| Msa1423540 | MtrunA17_Chr1g0149401 | 23.611 | 360 | 232 | 9 | 1 | 336 | 1 | 341 | 5.03e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423540 | AT2G13650.3 | 78.107 | 338 | 69 | 1 | 3 | 340 | 1 | 333 | 0.0 | 517 |
| Msa1423540 | AT2G13650.1 | 78.107 | 338 | 69 | 1 | 3 | 340 | 1 | 333 | 0.0 | 517 |
| Msa1423540 | AT2G13650.7 | 77.083 | 288 | 61 | 1 | 3 | 290 | 1 | 283 | 2.69e-153 | 432 |
| Msa1423540 | AT2G13650.2 | 77.083 | 288 | 61 | 1 | 3 | 290 | 1 | 283 | 2.69e-153 | 432 |
| Msa1423540 | AT2G13650.4 | 84.332 | 217 | 34 | 0 | 124 | 340 | 28 | 244 | 4.02e-126 | 362 |
| Msa1423540 | AT2G13650.5 | 84.332 | 217 | 34 | 0 | 124 | 340 | 28 | 244 | 4.02e-126 | 362 |
| Msa1423540 | AT2G13650.6 | 82.564 | 195 | 34 | 0 | 146 | 340 | 14 | 208 | 5.18e-111 | 322 |
| Msa1423540 | AT1G07290.1 | 53.177 | 299 | 113 | 3 | 41 | 336 | 79 | 353 | 1.02e-100 | 301 |
| Msa1423540 | AT1G21870.1 | 24.653 | 288 | 197 | 7 | 39 | 318 | 14 | 289 | 3.63e-15 | 75.9 |
| Msa1423540 | AT4G32272.1 | 25.217 | 345 | 226 | 8 | 10 | 339 | 17 | 344 | 1.11e-14 | 74.3 |
| Msa1423540 | AT1G77610.1 | 23.958 | 288 | 199 | 8 | 39 | 318 | 8 | 283 | 2.03e-14 | 73.6 |
| Msa1423540 | AT4G32272.2 | 25.070 | 359 | 236 | 9 | 2 | 339 | 13 | 359 | 1.77e-13 | 71.2 |
| Msa1423540 | AT5G19980.1 | 24.579 | 297 | 207 | 6 | 45 | 334 | 19 | 305 | 9.73e-13 | 68.6 |
Find 124 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAACAACCCTTCCATTTC+TGG | 0.079663 | tig0025562:+7450 | None:intergenic |
| TGTATCTATGTTGAGCCTTC+TGG | 0.107830 | tig0025562:-6978 | Msa1423540:CDS |
| GATCTGTGGTATTTGATTTC+CGG | 0.174220 | tig0025562:-3098 | Msa1423540:three_prime_UTR |
| GATGAACATGATGAAGAAAA+AGG | 0.229009 | tig0025562:-7505 | Msa1423540:CDS |
| GATGACCTTCAGTGGAGTTT+TGG | 0.230548 | tig0025562:-3761 | Msa1423540:CDS |
| TTGAGATCTCTCCCGGATTT+TGG | 0.239239 | tig0025562:+3150 | None:intergenic |
| CAACACTCTTTCTTTGCCTT+TGG | 0.245089 | tig0025562:-4092 | Msa1423540:CDS |
| TGGATATTTCAACTCACTAT+TGG | 0.261370 | tig0025562:+7858 | None:intergenic |
| TTTGCCATCTGCAGTCTTGT+AGG | 0.269187 | tig0025562:-3411 | Msa1423540:intron |
| CTTTAAAGTTCCTACAAGTT+TGG | 0.279646 | tig0025562:-3346 | Msa1423540:CDS |
| AATTCCTTATACTGCTCTTC+AGG | 0.279874 | tig0025562:+3126 | None:intergenic |
| CATAATCAAGCCTTATTATC+TGG | 0.283461 | tig0025562:-7421 | Msa1423540:CDS |
| ATCTGTGGTATTTGATTTCC+GGG | 0.298914 | tig0025562:-3097 | Msa1423540:three_prime_UTR |
| TTCTGAGATTACCTAGCTTT+TGG | 0.301861 | tig0025562:-3789 | Msa1423540:CDS |
| CAGATCATTTCAGCAATAAC+TGG | 0.302251 | tig0025562:-4495 | Msa1423540:CDS |
| TGAAGAAGAAGCACGAGTTT+TGG | 0.306390 | tig0025562:-7919 | Msa1423540:five_prime_UTR |
| CTGTTCGTTTGGATCTAATT+CGG | 0.307824 | tig0025562:-2938 | Msa1423540:three_prime_UTR |
| ATAAGCAAGTCCAGATAATA+AGG | 0.308574 | tig0025562:+7411 | None:intergenic |
| GTATCTATGTTGAGCCTTCT+GGG | 0.310178 | tig0025562:-6977 | Msa1423540:CDS |
| AACACTCTTTCTTTGCCTTT+GGG | 0.312536 | tig0025562:-4091 | Msa1423540:CDS |
| GTTGATTAAAGTCTGGTTTC+CGG | 0.328959 | tig0025562:-6924 | Msa1423540:CDS |
| AATGCAAATTGCAGGGCTTT+TGG | 0.330301 | tig0025562:-3194 | Msa1423540:intron |
| GGATATTTCAACTCACTATT+GGG | 0.333571 | tig0025562:+7859 | None:intergenic |
| CCGGTCAATGTTATATTTGT+TGG | 0.334498 | tig0025562:-6905 | Msa1423540:CDS |
| ATGTGGTTTCTTCATCAAAC+AGG | 0.337762 | tig0025562:-3715 | Msa1423540:CDS |
| GCAAAGCAATATACTAAATC+TGG | 0.337794 | tig0025562:-4148 | Msa1423540:CDS |
| ATTAAACTCATAATCCTTCA+TGG | 0.340340 | tig0025562:-7723 | Msa1423540:five_prime_UTR |
| AAACAGGGGCTACAACTTAC+AGG | 0.345308 | tig0025562:-3699 | Msa1423540:intron |
| AATATCCTTGATGGTGTATC+AGG | 0.361970 | tig0025562:-7320 | Msa1423540:intron |
| AGCACCACGAAGGCAGAGTC+TGG | 0.363622 | tig0025562:-5083 | Msa1423540:CDS |
| ATGAGTTTAATAAAGAGAAT+TGG | 0.369852 | tig0025562:+7735 | None:intergenic |
| CAATCCTGAAGAGCAGTATA+AGG | 0.371628 | tig0025562:-3130 | Msa1423540:exon |
| GCAGAGTTCTCCAAACTTGT+AGG | 0.380931 | tig0025562:+3336 | None:intergenic |
| TTAATCAACCTCCATGTTAG+TGG | 0.382334 | tig0025562:+6938 | None:intergenic |
| TGTTCGTTTGGATCTAATTC+GGG | 0.395941 | tig0025562:-2937 | Msa1423540:three_prime_UTR |
| CAGCCCAGACTCTGCCTTCG+TGG | 0.401927 | tig0025562:+5079 | None:intergenic |
| GTGGATGCAGAATTTCATTT+CGG | 0.402301 | tig0025562:-7008 | Msa1423540:intron |
| GCTTATTGTCTTTCCTCTTG+TGG | 0.404397 | tig0025562:-7394 | Msa1423540:CDS |
| CGAATTAGATCCAAACGAAC+AGG | 0.408996 | tig0025562:+2939 | None:intergenic |
| CTGGGCTGCTCTATTTCTAA+TGG | 0.414829 | tig0025562:-5064 | Msa1423540:intron |
| TGCTAATTACAAGCATGTTT+AGG | 0.418078 | tig0025562:-6880 | Msa1423540:intron |
| AAAGAAAGAGGTTCCAGAAA+TGG | 0.421951 | tig0025562:-7463 | Msa1423540:CDS |
| ATAAAGAGAATTGGATGAAG+AGG | 0.424946 | tig0025562:+7744 | None:intergenic |
| CATGAAAATGAAGTCTTCTT+CGG | 0.425537 | tig0025562:-7530 | Msa1423540:CDS |
| AAGATACCACTCTCAGTTGC+TGG | 0.429416 | tig0025562:-3378 | Msa1423540:CDS |
| CATGGAGGTTGATTAAAGTC+TGG | 0.433566 | tig0025562:-6931 | Msa1423540:CDS |
| TAATGCTGGAATATCCTTGA+TGG | 0.436279 | tig0025562:-7329 | Msa1423540:CDS |
| AGAGAAATATTGAAATTTGA+GGG | 0.439146 | tig0025562:+7769 | None:intergenic |
| AAGAGAAATATTGAAATTTG+AGG | 0.439743 | tig0025562:+7768 | None:intergenic |
| TTCAGGATTGAGATCTCTCC+CGG | 0.444271 | tig0025562:+3143 | None:intergenic |
| CGCTTTGAATCGCGGTGGCG+CGG | 0.452831 | tig0025562:+7571 | None:intergenic |
| CACAAATCACACCTCTCTAA+AGG | 0.456138 | tig0025562:+3001 | None:intergenic |
| ACAAATCACACCTCTCTAAA+GGG | 0.461401 | tig0025562:+3002 | None:intergenic |
| CTAATTCGGGAAGAGTTGCT+TGG | 0.470494 | tig0025562:-2924 | Msa1423540:three_prime_UTR |
| CCTCATTGAAAACAAGCATC+AGG | 0.493646 | tig0025562:+4062 | None:intergenic |
| CCAACAAATATAACATTGAC+CGG | 0.496391 | tig0025562:+6905 | None:intergenic |
| CCGTATCCATGACCCTTCGT+AGG | 0.502069 | tig0025562:+4170 | None:intergenic |
| ACACTCAACACAGGCGGAGC+TGG | 0.504574 | tig0025562:-7610 | Msa1423540:five_prime_UTR |
| TAAAGAGAATTGGATGAAGA+GGG | 0.505183 | tig0025562:+7745 | None:intergenic |
| TTAAACTCATAATCCTTCAT+GGG | 0.505292 | tig0025562:-7722 | Msa1423540:five_prime_UTR |
| TGAACCCAGAAAGAAACAAA+AGG | 0.507165 | tig0025562:+7802 | None:intergenic |
| GAACCCAGAAAGAAACAAAA+GGG | 0.507996 | tig0025562:+7803 | None:intergenic |
| GAAATACATTAATGTGGCTA+TGG | 0.516838 | tig0025562:-5169 | Msa1423540:CDS |
| CCTACGAAGGGTCATGGATA+CGG | 0.527759 | tig0025562:-4170 | Msa1423540:CDS |
| TGGTTAGTGATGACCTTCAG+TGG | 0.534587 | tig0025562:-3769 | Msa1423540:CDS |
| GCCTTGTTTGTTTATGATCG+AGG | 0.535945 | tig0025562:+7692 | None:intergenic |
| GCTGACCCTACGAAGGGTCA+TGG | 0.537855 | tig0025562:-4176 | Msa1423540:CDS |
| GTGAAGTTAGAAGTTCAACC+TGG | 0.538327 | tig0025562:-3074 | Msa1423540:three_prime_UTR |
| CGCGCCACCGCGATTCAAAG+CGG | 0.538704 | tig0025562:-7570 | Msa1423540:five_prime_UTR |
| TTGTAGGAACTTTAAAGAGA+AGG | 0.549360 | tig0025562:+3352 | None:intergenic |
| GATTGCATTGCTAGCAATGG+AGG | 0.553491 | tig0025562:-2902 | Msa1423540:three_prime_UTR |
| AACTAAAATCATTCCACAAG+AGG | 0.562641 | tig0025562:+7381 | None:intergenic |
| CGTATCCATGACCCTTCGTA+GGG | 0.564291 | tig0025562:+4171 | None:intergenic |
| TTTCGCTAGAGCCAAAATCC+GGG | 0.569283 | tig0025562:-3161 | Msa1423540:CDS |
| GTTGAAATATCCACCAAAGT+TGG | 0.570846 | tig0025562:-7848 | Msa1423540:five_prime_UTR |
| AAAGAGGTTCCAGAAATGGA+AGG | 0.572735 | tig0025562:-7459 | Msa1423540:CDS |
| TGACGACACCTCAAAATCCC+AGG | 0.575984 | tig0025562:+3056 | None:intergenic |
| ACACAGGCGGAGCTGGTGGT+CGG | 0.576955 | tig0025562:-7603 | Msa1423540:five_prime_UTR |
| AATTGCGCCGCTTTGAATCG+CGG | 0.578945 | tig0025562:+7563 | None:intergenic |
| AACTATCTCACCCTTTAGAG+AGG | 0.578986 | tig0025562:-3012 | Msa1423540:three_prime_UTR |
| GTCATCACTAACCAAAAGCT+AGG | 0.580842 | tig0025562:+3778 | None:intergenic |
| TTTCAACTGAACCACTAACA+TGG | 0.581249 | tig0025562:-6949 | Msa1423540:CDS |
| TTGGATTGCATTGCTAGCAA+TGG | 0.583211 | tig0025562:-2905 | Msa1423540:three_prime_UTR |
| CTCAACACAGGCGGAGCTGG+TGG | 0.585956 | tig0025562:-7607 | Msa1423540:five_prime_UTR |
| TGTGGTTTCTTCATCAAACA+GGG | 0.587936 | tig0025562:-3714 | Msa1423540:CDS |
| TCCTCGATCATAAACAAACA+AGG | 0.590957 | tig0025562:-7693 | Msa1423540:five_prime_UTR |
| GCACCACGAAGGCAGAGTCT+GGG | 0.591892 | tig0025562:-5082 | Msa1423540:CDS |
| GTTCATGATTACTTCTCTGA+GGG | 0.593247 | tig0025562:-2975 | Msa1423540:three_prime_UTR |
| CGTCAAAGAGATGATTGTAT+CGG | 0.595188 | tig0025562:-3038 | Msa1423540:three_prime_UTR |
| ATCATTTCAGCAATAACTGG+AGG | 0.613231 | tig0025562:-4492 | Msa1423540:CDS |
| CAGTTTGAAATACATTAATG+TGG | 0.616131 | tig0025562:-5175 | Msa1423540:CDS |
| TGCGCCGCTTTGAATCGCGG+TGG | 0.616443 | tig0025562:+7566 | None:intergenic |
| GAATTAGATCCAAACGAACA+GGG | 0.618840 | tig0025562:+2940 | None:intergenic |
| AGTTCATGATTACTTCTCTG+AGG | 0.619402 | tig0025562:-2976 | Msa1423540:three_prime_UTR |
| TCATTTCAGCAATAACTGGA+GGG | 0.623711 | tig0025562:-4491 | Msa1423540:CDS |
| AAGCTAGGTAATCTCAGAAG+TGG | 0.624340 | tig0025562:+3793 | None:intergenic |
| AGGATGCCAGCAACTGAGAG+TGG | 0.626159 | tig0025562:+3372 | None:intergenic |
| TATTGCAGCTGACCCTACGA+AGG | 0.633946 | tig0025562:-4183 | Msa1423540:intron |
| ATATGTTGCATCTTGAGACA+AGG | 0.635225 | tig0025562:-2755 | Msa1423540:three_prime_UTR |
| TATGTTGCATCTTGAGACAA+GGG | 0.637981 | tig0025562:-2754 | Msa1423540:three_prime_UTR |
| AAATTTAAATGAGTTTACGA+TGG | 0.641617 | tig0025562:-4125 | Msa1423540:CDS |
| TAGACCCAAAACTCCACTGA+AGG | 0.641650 | tig0025562:+3756 | None:intergenic |
| TTAATGCAACTGGCTATGTG+TGG | 0.643415 | tig0025562:-4452 | Msa1423540:CDS |
| AATTAGATCCAAACGAACAG+GGG | 0.648320 | tig0025562:+2941 | None:intergenic |
| AAGAGGTTCCAGAAATGGAA+GGG | 0.648638 | tig0025562:-7458 | Msa1423540:CDS |
| AATTACCTGATACACCATCA+AGG | 0.651962 | tig0025562:+7315 | None:intergenic |
| TGAAGTTAGAAGTTCAACCT+GGG | 0.655445 | tig0025562:-3073 | Msa1423540:three_prime_UTR |
| CAGTTGAAACTAAACCCAGA+AGG | 0.657499 | tig0025562:+6963 | None:intergenic |
| CAATTAGCTTCACCTCCATG+TGG | 0.658205 | tig0025562:-3732 | Msa1423540:CDS |
| ATTGCAGCTGACCCTACGAA+GGG | 0.668006 | tig0025562:-4182 | Msa1423540:intron |
| GAACAAGTACATTTCACCAA+CGG | 0.669904 | tig0025562:+5110 | None:intergenic |
| AGCATCAGGAAAATTCCCAA+AGG | 0.675180 | tig0025562:+4076 | None:intergenic |
| AACCCAGAAAGAAACAAAAG+GGG | 0.678664 | tig0025562:+7804 | None:intergenic |
| ACGAATGTCATAACTGCCGT+TGG | 0.688649 | tig0025562:-5126 | Msa1423540:CDS |
| TTGAACTTCTAACTTCACCC+CGG | 0.689216 | tig0025562:+3079 | None:intergenic |
| CATCGTACTACACTCAACAC+AGG | 0.696953 | tig0025562:-7619 | Msa1423540:five_prime_UTR |
| TGTTTGATGAAGAAACCACA+TGG | 0.697962 | tig0025562:+3717 | None:intergenic |
| GTGGTTTCTTCATCAAACAG+GGG | 0.705100 | tig0025562:-3713 | Msa1423540:CDS |
| CAACTGAACCACTAACATGG+AGG | 0.707867 | tig0025562:-6946 | Msa1423540:CDS |
| CGTACTACACTCAACACAGG+CGG | 0.711494 | tig0025562:-7616 | Msa1423540:five_prime_UTR |
| TTGTTCAGTAAGCACCACGA+AGG | 0.728813 | tig0025562:-5093 | Msa1423540:CDS |
| TCTGTGGTATTTGATTTCCG+GGG | 0.753153 | tig0025562:-3096 | Msa1423540:three_prime_UTR |
| AAATTGTCAAGTGATACATG+AGG | 0.779215 | tig0025562:+2818 | None:intergenic |
| TTGATGAAGAAACCACATGG+AGG | 0.813768 | tig0025562:+3720 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTTACTATAAATATTTTTT+AGG | - | tig0025562:6034-6053 | Msa1423540:intron | 10.0% |
| !! | AATCTAACATAAAAAAAAAA+AGG | + | tig0025562:7822-7841 | None:intergenic | 10.0% |
| !!! | TATTTTCATATGATAATGTT+TGG | - | tig0025562:3963-3982 | Msa1423540:intron | 15.0% |
| !! | CAAAAATATTTATGTTTAAG+AGG | + | tig0025562:4624-4643 | None:intergenic | 15.0% |
| !!! | AAACATAAATATTTTTGTGA+CGG | - | tig0025562:4627-4646 | Msa1423540:intron | 15.0% |
| !! | ATTATTTATGATAAGATACT+AGG | - | tig0025562:4993-5012 | Msa1423540:intron | 15.0% |
| !! | TTATTTATGATAAGATACTA+GGG | - | tig0025562:4994-5013 | Msa1423540:intron | 15.0% |
| !!! | CTTTTCTAATTATTGTTTAT+TGG | - | tig0025562:5117-5136 | Msa1423540:CDS | 15.0% |
| !!! | ATTTTATTTCTCTACTTTTT+AGG | - | tig0025562:5833-5852 | Msa1423540:intron | 15.0% |
| !!! | ATAATTTTTCTGATATAACA+CGG | + | tig0025562:7221-7240 | None:intergenic | 15.0% |
| !! | AGAGAAATATTGAAATTTGA+GGG | + | tig0025562:2916-2935 | None:intergenic | 20.0% |
| !! | AAGAGAAATATTGAAATTTG+AGG | + | tig0025562:2917-2936 | None:intergenic | 20.0% |
| !! | ATGAGTTTAATAAAGAGAAT+TGG | + | tig0025562:2950-2969 | None:intergenic | 20.0% |
| !!! | ATAGTTTAATGATGATGTAA+AGG | - | tig0025562:3640-3659 | Msa1423540:intron | 20.0% |
| !!! | TTAATTTGTTTATCCAAACA+AGG | - | tig0025562:4225-4244 | Msa1423540:intron | 20.0% |
| !! | TCTCAAACTTAATAACTAAT+AGG | + | tig0025562:4251-4270 | None:intergenic | 20.0% |
| !!! | TTAAAATGAAAGTACAATAG+AGG | - | tig0025562:4521-4540 | Msa1423540:intron | 20.0% |
| !!! | TAAAATGAAAGTACAATAGA+GGG | - | tig0025562:4522-4541 | Msa1423540:intron | 20.0% |
| !! | TAAAACCAAATCCATATTAA+TGG | + | tig0025562:4955-4974 | None:intergenic | 20.0% |
| !! | TCTAATTATTGTTTATTGGT+AGG | - | tig0025562:5121-5140 | Msa1423540:CDS | 20.0% |
| !!! | AATAATTTTCTTTTTGCTGA+TGG | - | tig0025562:5179-5198 | Msa1423540:intron | 20.0% |
| !!! | ATAATTTTCTTTTTGCTGAT+GGG | - | tig0025562:5180-5199 | Msa1423540:intron | 20.0% |
| !! | TTAAAAAAAGTAGTAGTATG+CGG | - | tig0025562:5222-5241 | Msa1423540:intron | 20.0% |
| !!! | TTTTTAGGTTACATAAATGA+TGG | - | tig0025562:5848-5867 | Msa1423540:intron | 20.0% |
| !! | ATTTAAAAACATGAGATGTT+TGG | + | tig0025562:6135-6154 | None:intergenic | 20.0% |
| !! | AAATTTAAATGAGTTTACGA+TGG | - | tig0025562:6557-6576 | Msa1423540:intron | 20.0% |
| !! | TTGCAAAACGAAAAAATATA+GGG | + | tig0025562:6829-6848 | None:intergenic | 20.0% |
| !! | TTTGCAAAACGAAAAAATAT+AGG | + | tig0025562:6830-6849 | None:intergenic | 20.0% |
| !! | ATTAATGTATTTCAATTGAC+AGG | - | tig0025562:6866-6885 | Msa1423540:intron | 20.0% |
| !! | AAATTAAATTTGTCGCATTT+AGG | + | tig0025562:7066-7085 | None:intergenic | 20.0% |
| !! | TCCAATTTAATATATTGATC+GGG | + | tig0025562:7100-7119 | None:intergenic | 20.0% |
| !! | GTCCAATTTAATATATTGAT+CGG | + | tig0025562:7101-7120 | None:intergenic | 20.0% |
| ! | ATTAAACTCATAATCCTTCA+TGG | - | tig0025562:2959-2978 | Msa1423540:three_prime_UTR | 25.0% |
| ! | TTAAACTCATAATCCTTCAT+GGG | - | tig0025562:2960-2979 | Msa1423540:three_prime_UTR | 25.0% |
| ! | ATGAACATGATGAAGAAAAA+GGG | - | tig0025562:3178-3197 | Msa1423540:CDS | 25.0% |
| !!! | TCTAGTTATGATTTTAATGC+TGG | - | tig0025562:3339-3358 | Msa1423540:CDS | 25.0% |
| ! | AGAAATAGCTTATACATAAG+TGG | + | tig0025562:3481-3500 | None:intergenic | 25.0% |
| !! | TCATATGATAATGTTTGGAT+TGG | - | tig0025562:3968-3987 | Msa1423540:intron | 25.0% |
| !! | TAGTTATTAAGTTTGAGATG+TGG | - | tig0025562:4253-4272 | Msa1423540:intron | 25.0% |
| !! | AAAATGAAAGTACAATAGAG+GGG | - | tig0025562:4523-4542 | Msa1423540:intron | 25.0% |
| ! | TCTTGCTTAAATTCTACATT+TGG | + | tig0025562:4553-4572 | None:intergenic | 25.0% |
| ! | TTTAAGCAAGATAGATGAAA+TGG | - | tig0025562:4562-4581 | Msa1423540:intron | 25.0% |
| !! | TAATTTTCTATGAGATTGAG+TGG | - | tig0025562:4667-4686 | Msa1423540:intron | 25.0% |
| !! | AAAGCATTAAAGAGAAGTTA+GGG | - | tig0025562:4781-4800 | Msa1423540:intron | 25.0% |
| ! | GTTCAATAGTTAGAGATAAA+AGG | - | tig0025562:4898-4917 | Msa1423540:intron | 25.0% |
| ! | ATTAGATTTCAAAAAACTGG+AGG | + | tig0025562:5081-5100 | None:intergenic | 25.0% |
| ! | GAGATTAGATTTCAAAAAAC+TGG | + | tig0025562:5084-5103 | None:intergenic | 25.0% |
| !!! | GAAACACTATTCCTATTTTT+GGG | - | tig0025562:5321-5340 | Msa1423540:intron | 25.0% |
| !!! | AAACACTATTCCTATTTTTG+GGG | - | tig0025562:5322-5341 | Msa1423540:intron | 25.0% |
| !! | ATTTTTCCAGTCTCAATTTA+TGG | - | tig0025562:5408-5427 | Msa1423540:intron | 25.0% |
| !! | CAGTTTGAAATACATTAATG+TGG | - | tig0025562:5507-5526 | Msa1423540:intron | 25.0% |
| !!! | TGTTTTACCTTTTTAAGTTC+TGG | - | tig0025562:5721-5740 | Msa1423540:intron | 25.0% |
| ! | AAACAAACCAGAACTTAAAA+AGG | + | tig0025562:5731-5750 | None:intergenic | 25.0% |
| ! | TACAATAAAGCAGTATATGT+TGG | + | tig0025562:5784-5803 | None:intergenic | 25.0% |
| ! | GAGAAATAAAATATTTCCCA+CGG | + | tig0025562:5825-5844 | None:intergenic | 25.0% |
| ! | CAACTATATCATACTCAATT+TGG | + | tig0025562:5936-5955 | None:intergenic | 25.0% |
| ! | TCCCGATCAATATATTAAAT+TGG | - | tig0025562:7096-7115 | Msa1423540:intron | 25.0% |
| GGATATTTCAACTCACTATT+GGG | + | tig0025562:2826-2845 | None:intergenic | 30.0% | |
| TGGATATTTCAACTCACTAT+TGG | + | tig0025562:2827-2846 | None:intergenic | 30.0% | |
| !! | TTGAAAAAAGGTACCAACTT+TGG | + | tig0025562:2850-2869 | None:intergenic | 30.0% |
| TAAAGAGAATTGGATGAAGA+GGG | + | tig0025562:2940-2959 | None:intergenic | 30.0% | |
| ATAAAGAGAATTGGATGAAG+AGG | + | tig0025562:2941-2960 | None:intergenic | 30.0% | |
| CATGAAAATGAAGTCTTCTT+CGG | - | tig0025562:3152-3171 | Msa1423540:CDS | 30.0% | |
| GATGAACATGATGAAGAAAA+AGG | - | tig0025562:3177-3196 | Msa1423540:CDS | 30.0% | |
| TTGGAAAAAAGCAAAGAAAG+AGG | - | tig0025562:3207-3226 | Msa1423540:intron | 30.0% | |
| !! | CATAATCAAGCCTTATTATC+TGG | - | tig0025562:3261-3280 | Msa1423540:intron | 30.0% |
| ATAAGCAAGTCCAGATAATA+AGG | + | tig0025562:3274-3293 | None:intergenic | 30.0% | |
| AACTAAAATCATTCCACAAG+AGG | + | tig0025562:3304-3323 | None:intergenic | 30.0% | |
| AGAAGAAAACACAGAAAAAG+GGG | + | tig0025562:3406-3425 | None:intergenic | 30.0% | |
| GAGAAGAAAACACAGAAAAA+GGG | + | tig0025562:3407-3426 | None:intergenic | 30.0% | |
| AGAGAAGAAAACACAGAAAA+AGG | + | tig0025562:3408-3427 | None:intergenic | 30.0% | |
| ! | TGTGTTTTCTTCTCTAACTT+AGG | - | tig0025562:3413-3432 | Msa1423540:intron | 30.0% |
| AATAAGCCATTTATCCAAAC+AGG | + | tig0025562:3440-3459 | None:intergenic | 30.0% | |
| AGCTTATACATAAGTGGTTA+TGG | + | tig0025562:3475-3494 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAATC+AGG | - | tig0025562:3604-3623 | Msa1423540:intron | 30.0% | |
| CATTAAACTATACAGATCCA+AGG | + | tig0025562:3631-3650 | None:intergenic | 30.0% | |
| ! | TGTAAAGGTTCATACTTTTG+TGG | - | tig0025562:3655-3674 | Msa1423540:intron | 30.0% |
| CCAACAAATATAACATTGAC+CGG | + | tig0025562:3780-3799 | None:intergenic | 30.0% | |
| TGCTAATTACAAGCATGTTT+AGG | - | tig0025562:3802-3821 | Msa1423540:intron | 30.0% | |
| ! | GTATGAAGTCTTTAACTTTG+AGG | - | tig0025562:3824-3843 | Msa1423540:intron | 30.0% |
| ATATGTCAATCATCTTCCAA+AGG | - | tig0025562:3880-3899 | Msa1423540:intron | 30.0% | |
| TATGTCAATCATCTTCCAAA+GGG | - | tig0025562:3881-3900 | Msa1423540:intron | 30.0% | |
| ! | ACTGTTTTCACAAGATATCT+TGG | + | tig0025562:4105-4124 | None:intergenic | 30.0% |
| !! | AATAACTAATAGGCCTTGTT+TGG | + | tig0025562:4241-4260 | None:intergenic | 30.0% |
| AAATTGTCAGACTTGTAATC+TGG | + | tig0025562:4359-4378 | None:intergenic | 30.0% | |
| AAATTGTCAGACTTGTAATC+TGG | + | tig0025562:4359-4378 | None:intergenic | 30.0% | |
| ! | AAATGAAAGTACAATAGAGG+GGG | - | tig0025562:4524-4543 | Msa1423540:intron | 30.0% |
| !! | GAAAGCATTAAAGAGAAGTT+AGG | - | tig0025562:4780-4799 | Msa1423540:intron | 30.0% |
| CAATAGTTAGAGATAAAAGG+AGG | - | tig0025562:4901-4920 | Msa1423540:intron | 30.0% | |
| CCAAATCCATATTAATGGTT+TGG | + | tig0025562:4950-4969 | None:intergenic | 30.0% | |
| CCAAACCATTAATATGGATT+TGG | - | tig0025562:4947-4966 | Msa1423540:intron | 30.0% | |
| TTTGATTAATTTCCCCATCA+TGG | - | tig0025562:5022-5041 | Msa1423540:intron | 30.0% | |
| ATTGTTTATTGGTAGGTACT+AGG | - | tig0025562:5128-5147 | Msa1423540:CDS | 30.0% | |
| GATTCCATTTATGAGTATTC+TGG | - | tig0025562:5257-5276 | Msa1423540:intron | 30.0% | |
| TACACCAGAATACTCATAAA+TGG | + | tig0025562:5264-5283 | None:intergenic | 30.0% | |
| AAAATAGGAATAGTGTTTCC+TGG | + | tig0025562:5320-5339 | None:intergenic | 30.0% | |
| ! | GGAAACACTATTCCTATTTT+TGG | - | tig0025562:5320-5339 | Msa1423540:intron | 30.0% |
| GTAAATCCATAAATTGAGAC+TGG | + | tig0025562:5417-5436 | None:intergenic | 30.0% | |
| GAAATACATTAATGTGGCTA+TGG | - | tig0025562:5513-5532 | Msa1423540:intron | 30.0% | |
| ACATTATTCCACATCAAAGT+GGG | + | tig0025562:5694-5713 | None:intergenic | 30.0% | |
| TACATTATTCCACATCAAAG+TGG | + | tig0025562:5695-5714 | None:intergenic | 30.0% | |
| ! | TGCTTTATTGTAGTTTCCAA+AGG | - | tig0025562:5792-5811 | Msa1423540:intron | 30.0% |
| CTAAAACACCAATTCAACTT+CGG | + | tig0025562:5874-5893 | None:intergenic | 30.0% | |
| TAACAATGAAGAGTTTCAAG+TGG | + | tig0025562:6070-6089 | None:intergenic | 30.0% | |
| GTAAAGCACATATCCAAAAT+TGG | + | tig0025562:6113-6132 | None:intergenic | 30.0% | |
| !!! | ATTTTATTTGAAGAGCATCC+AGG | + | tig0025562:6368-6387 | None:intergenic | 30.0% |
| TTTACACTTCTTAACAGATG+AGG | - | tig0025562:6387-6406 | Msa1423540:intron | 30.0% | |
| TTAACAGATGAGGTTTAGTT+TGG | - | tig0025562:6397-6416 | Msa1423540:intron | 30.0% | |
| GCAAAGCAATATACTAAATC+TGG | - | tig0025562:6534-6553 | Msa1423540:intron | 30.0% | |
| TGATTTCACAGACAAAATGT+GGG | + | tig0025562:6676-6695 | None:intergenic | 30.0% | |
| ATGATTTCACAGACAAAATG+TGG | + | tig0025562:6677-6696 | None:intergenic | 30.0% | |
| GTCTGTGAAATCATTATATG+AGG | - | tig0025562:6683-6702 | Msa1423540:intron | 30.0% | |
| ! | ACAAACAAAAAGCACATTTC+TGG | + | tig0025562:6777-6796 | None:intergenic | 30.0% |
| TTTATCTGAAGAGCCATAAT+TGG | + | tig0025562:7023-7042 | None:intergenic | 30.0% | |
| ATTTAATGATGCATACACCA+CGG | - | tig0025562:7136-7155 | Msa1423540:intron | 30.0% | |
| ! | TTGTAGGAACTTTAAAGAGA+AGG | + | tig0025562:7333-7352 | None:intergenic | 30.0% |
| !! | CTTTAAAGTTCCTACAAGTT+TGG | - | tig0025562:7336-7355 | Msa1423540:CDS | 30.0% |
| ! | AACTCTGCTAGCATTTTATT+TGG | - | tig0025562:7361-7380 | Msa1423540:CDS | 30.0% |
| ACAAGTTTGTGTTACATTCT+TGG | - | tig0025562:7447-7466 | Msa1423540:CDS | 30.0% | |
| ! | TAAGGAATTTTTCTGATCTG+TGG | - | tig0025562:7570-7589 | Msa1423540:five_prime_UTR | 30.0% |
| AAATTGTCAAGTGATACATG+AGG | + | tig0025562:7867-7886 | None:intergenic | 30.0% | |
| GTTGAAATATCCACCAAAGT+TGG | - | tig0025562:2834-2853 | Msa1423540:three_prime_UTR | 35.0% | |
| !! | AAAAAAGGTACCAACTTTGG+TGG | + | tig0025562:2847-2866 | None:intergenic | 35.0% |
| !! | GGGGTTCTGAATTTGAAAAA+AGG | + | tig0025562:2862-2881 | None:intergenic | 35.0% |
| !! | AACCCCTTTTGTTTCTTTCT+GGG | - | tig0025562:2876-2895 | Msa1423540:three_prime_UTR | 35.0% |
| AACCCAGAAAGAAACAAAAG+GGG | + | tig0025562:2881-2900 | None:intergenic | 35.0% | |
| GAACCCAGAAAGAAACAAAA+GGG | + | tig0025562:2882-2901 | None:intergenic | 35.0% | |
| TGAACCCAGAAAGAAACAAA+AGG | + | tig0025562:2883-2902 | None:intergenic | 35.0% | |
| TCCTCGATCATAAACAAACA+AGG | - | tig0025562:2989-3008 | Msa1423540:three_prime_UTR | 35.0% | |
| TGAAGAAAAAGGGAAGTTGT+TGG | - | tig0025562:3188-3207 | Msa1423540:intron | 35.0% | |
| AAAGAAAGAGGTTCCAGAAA+TGG | - | tig0025562:3219-3238 | Msa1423540:intron | 35.0% | |
| TAATGCTGGAATATCCTTGA+TGG | - | tig0025562:3353-3372 | Msa1423540:CDS | 35.0% | |
| !! | AATATCCTTGATGGTGTATC+AGG | - | tig0025562:3362-3381 | Msa1423540:CDS | 35.0% |
| AATTACCTGATACACCATCA+AGG | + | tig0025562:3370-3389 | None:intergenic | 35.0% | |
| TTAGGTCCTGTTTGGATAAA+TGG | - | tig0025562:3431-3450 | Msa1423540:intron | 35.0% | |
| GTGGATGCAGAATTTCATTT+CGG | - | tig0025562:3674-3693 | Msa1423540:intron | 35.0% | |
| TTTCAACTGAACCACTAACA+TGG | - | tig0025562:3733-3752 | Msa1423540:CDS | 35.0% | |
| TTAATCAACCTCCATGTTAG+TGG | + | tig0025562:3747-3766 | None:intergenic | 35.0% | |
| ! | GTTGATTAAAGTCTGGTTTC+CGG | - | tig0025562:3758-3777 | Msa1423540:CDS | 35.0% |
| CCGGTCAATGTTATATTTGT+TGG | - | tig0025562:3777-3796 | Msa1423540:CDS | 35.0% | |
| ATGTCAATCATCTTCCAAAG+GGG | - | tig0025562:3882-3901 | Msa1423540:intron | 35.0% | |
| ACATGTTCATAAGCTGTGTT+TGG | - | tig0025562:4061-4080 | Msa1423540:CDS | 35.0% | |
| GTGGAGATAACACACAATTT+CGG | - | tig0025562:4272-4291 | Msa1423540:intron | 35.0% | |
| ATAACACACAATTTCGGAAG+TGG | - | tig0025562:4278-4297 | Msa1423540:intron | 35.0% | |
| ! | TGATGTATTTTGTGACAGAG+AGG | - | tig0025562:4596-4615 | Msa1423540:intron | 35.0% |
| ! | AGAGTATTACAGTAGAAGAG+TGG | - | tig0025562:4729-4748 | Msa1423540:intron | 35.0% |
| GAGTATTACAGTAGAAGAGT+GGG | - | tig0025562:4730-4749 | Msa1423540:intron | 35.0% | |
| AATGATAAGAGTCTCAGCTT+CGG | - | tig0025562:4809-4828 | Msa1423540:intron | 35.0% | |
| AATTTCCCCATCATGGAAAA+TGG | - | tig0025562:5029-5048 | Msa1423540:intron | 35.0% | |
| GAACAAGTACATTTCACCAA+CGG | + | tig0025562:5575-5594 | None:intergenic | 35.0% | |
| ATTATTCCACATCAAAGTGG+GGG | + | tig0025562:5692-5711 | None:intergenic | 35.0% | |
| CATTATTCCACATCAAAGTG+GGG | + | tig0025562:5693-5712 | None:intergenic | 35.0% | |
| !! | CGAAGTTGAATTGGTGTTTT+AGG | - | tig0025562:5872-5891 | Msa1423540:intron | 35.0% |
| ATATAGTTGCGAGACAGTTA+CGG | - | tig0025562:5947-5966 | Msa1423540:intron | 35.0% | |
| TTGATGTTTGGGAATACTCA+GGG | - | tig0025562:5970-5989 | Msa1423540:intron | 35.0% | |
| ! | ACATATCCAAAATTGGTGCT+TGG | + | tig0025562:6106-6125 | None:intergenic | 35.0% |
| GAAATGATCTGCAAGTGAAA+GGG | + | tig0025562:6178-6197 | None:intergenic | 35.0% | |
| TGAAATGATCTGCAAGTGAA+AGG | + | tig0025562:6179-6198 | None:intergenic | 35.0% | |
| CAGATCATTTCAGCAATAAC+TGG | - | tig0025562:6187-6206 | Msa1423540:intron | 35.0% | |
| ATCATTTCAGCAATAACTGG+AGG | - | tig0025562:6190-6209 | Msa1423540:intron | 35.0% | |
| TCATTTCAGCAATAACTGGA+GGG | - | tig0025562:6191-6210 | Msa1423540:intron | 35.0% | |
| ! | GATCTCTCTTTTAATGCAAC+TGG | - | tig0025562:6220-6239 | Msa1423540:intron | 35.0% |
| AACACTCTTTCTTTGCCTTT+GGG | - | tig0025562:6591-6610 | Msa1423540:intron | 35.0% | |
| !!! | TTCTGAGATTACCTAGCTTT+TGG | - | tig0025562:6893-6912 | Msa1423540:CDS | 35.0% |
| TGTTTGATGAAGAAACCACA+TGG | + | tig0025562:6968-6987 | None:intergenic | 35.0% | |
| ATGTGGTTTCTTCATCAAAC+AGG | - | tig0025562:6967-6986 | Msa1423540:CDS | 35.0% | |
| TGTGGTTTCTTCATCAAACA+GGG | - | tig0025562:6968-6987 | Msa1423540:CDS | 35.0% | |
| GTGGTCAGAAATTCCAATTA+TGG | - | tig0025562:7007-7026 | Msa1423540:intron | 35.0% | |
| AATTGGACTTCGTGACTAAT+AGG | - | tig0025562:7113-7132 | Msa1423540:intron | 35.0% | |
| AAGGTAGAAATGCAAATTGC+AGG | - | tig0025562:7480-7499 | Msa1423540:CDS | 35.0% | |
| AGGTAGAAATGCAAATTGCA+GGG | - | tig0025562:7481-7500 | Msa1423540:CDS | 35.0% | |
| AATTCCTTATACTGCTCTTC+AGG | + | tig0025562:7559-7578 | None:intergenic | 35.0% | |
| ! | GATCTGTGGTATTTGATTTC+CGG | - | tig0025562:7584-7603 | Msa1423540:five_prime_UTR | 35.0% |
| ! | ATCTGTGGTATTTGATTTCC+GGG | - | tig0025562:7585-7604 | Msa1423540:five_prime_UTR | 35.0% |
| TGAAGTTAGAAGTTCAACCT+GGG | - | tig0025562:7609-7628 | Msa1423540:five_prime_UTR | 35.0% | |
| CGTCAAAGAGATGATTGTAT+CGG | - | tig0025562:7644-7663 | Msa1423540:five_prime_UTR | 35.0% | |
| ACAAATCACACCTCTCTAAA+GGG | + | tig0025562:7683-7702 | None:intergenic | 35.0% | |
| AGTTCATGATTACTTCTCTG+AGG | - | tig0025562:7706-7725 | Msa1423540:five_prime_UTR | 35.0% | |
| GTTCATGATTACTTCTCTGA+GGG | - | tig0025562:7707-7726 | Msa1423540:five_prime_UTR | 35.0% | |
| AATTAGATCCAAACGAACAG+GGG | + | tig0025562:7744-7763 | None:intergenic | 35.0% | |
| GAATTAGATCCAAACGAACA+GGG | + | tig0025562:7745-7764 | None:intergenic | 35.0% | |
| CTGTTCGTTTGGATCTAATT+CGG | - | tig0025562:7744-7763 | Msa1423540:five_prime_UTR | 35.0% | |
| TGTTCGTTTGGATCTAATTC+GGG | - | tig0025562:7745-7764 | Msa1423540:five_prime_UTR | 35.0% | |
| ATATGTTGCATCTTGAGACA+AGG | - | tig0025562:7927-7946 | Msa1423540:five_prime_UTR | 35.0% | |
| TATGTTGCATCTTGAGACAA+GGG | - | tig0025562:7928-7947 | Msa1423540:five_prime_UTR | 35.0% | |
| !! | TGAAGAAGAAGCACGAGTTT+TGG | - | tig0025562:2763-2782 | Msa1423540:three_prime_UTR | 40.0% |
| !! | GAACCCCTTTTGTTTCTTTC+TGG | - | tig0025562:2875-2894 | Msa1423540:three_prime_UTR | 40.0% |
| !! | GCCTTGTTTGTTTATGATCG+AGG | + | tig0025562:2993-3012 | None:intergenic | 40.0% |
| AAAGAGGTTCCAGAAATGGA+AGG | - | tig0025562:3223-3242 | Msa1423540:intron | 40.0% | |
| AAGAGGTTCCAGAAATGGAA+GGG | - | tig0025562:3224-3243 | Msa1423540:intron | 40.0% | |
| AACAACAACCCTTCCATTTC+TGG | + | tig0025562:3235-3254 | None:intergenic | 40.0% | |
| GCTTATTGTCTTTCCTCTTG+TGG | - | tig0025562:3288-3307 | Msa1423540:intron | 40.0% | |
| TCTCTAACTTAGGTCCTGTT+TGG | - | tig0025562:3423-3442 | Msa1423540:intron | 40.0% | |
| ! | AGCTGCTTTCGTAAGTTATC+TGG | - | tig0025562:3547-3566 | Msa1423540:intron | 40.0% |
| ! | GCTGCTTTCGTAAGTTATCT+GGG | - | tig0025562:3548-3567 | Msa1423540:intron | 40.0% |
| TGTATCTATGTTGAGCCTTC+TGG | - | tig0025562:3704-3723 | Msa1423540:CDS | 40.0% | |
| GTATCTATGTTGAGCCTTCT+GGG | - | tig0025562:3705-3724 | Msa1423540:CDS | 40.0% | |
| CAGTTGAAACTAAACCCAGA+AGG | + | tig0025562:3722-3741 | None:intergenic | 40.0% | |
| ! | CATGGAGGTTGATTAAAGTC+TGG | - | tig0025562:3751-3770 | Msa1423540:CDS | 40.0% |
| ! | AAAGTGAAGCACCTGTAAGA+TGG | - | tig0025562:4857-4876 | Msa1423540:intron | 40.0% |
| ! | AAGTGAAGCACCTGTAAGAT+GGG | - | tig0025562:4858-4877 | Msa1423540:intron | 40.0% |
| CTATTGAACATGCTCCAACT+AGG | + | tig0025562:4887-4906 | None:intergenic | 40.0% | |
| TTAGAGATAAAAGGAGGCCA+AGG | - | tig0025562:4907-4926 | Msa1423540:intron | 40.0% | |
| ! | CCATATTAATGGTTTGGCCA+TGG | + | tig0025562:4944-4963 | None:intergenic | 40.0% |
| CCATGGCCAAACCATTAATA+TGG | - | tig0025562:4941-4960 | Msa1423540:intron | 40.0% | |
| !! | CAAAGCCATTTTCCATGATG+GGG | + | tig0025562:5037-5056 | None:intergenic | 40.0% |
| !! | CCAAAGCCATTTTCCATGAT+GGG | + | tig0025562:5038-5057 | None:intergenic | 40.0% |
| !! | ACCAAAGCCATTTTCCATGA+TGG | + | tig0025562:5039-5058 | None:intergenic | 40.0% |
| CTTTATGCTGATATTCGTCC+AGG | - | tig0025562:5299-5318 | Msa1423540:intron | 40.0% | |
| TTGCTTACATCTCCTACAAC+CGG | - | tig0025562:5750-5769 | Msa1423540:intron | 40.0% | |
| AATGATGGCCGAAGTTGAAT+TGG | - | tig0025562:5863-5882 | Msa1423540:intron | 40.0% | |
| ! | AGACAGTTACGGTTGATGTT+TGG | - | tig0025562:5958-5977 | Msa1423540:intron | 40.0% |
| ! | GACAGTTACGGTTGATGTTT+GGG | - | tig0025562:5959-5978 | Msa1423540:intron | 40.0% |
| GTTGATGTTTGGGAATACTC+AGG | - | tig0025562:5969-5988 | Msa1423540:intron | 40.0% | |
| ! | CTTGAACCAAGCACCAATTT+TGG | - | tig0025562:6097-6116 | Msa1423540:intron | 40.0% |
| TTAATGCAACTGGCTATGTG+TGG | - | tig0025562:6230-6249 | Msa1423540:intron | 40.0% | |
| !! | AGTTGAGTGTGCTGATTAGT+TGG | - | tig0025562:6462-6481 | Msa1423540:intron | 40.0% |
| CAACACTCTTTCTTTGCCTT+TGG | - | tig0025562:6590-6609 | Msa1423540:intron | 40.0% | |
| AGCATCAGGAAAATTCCCAA+AGG | + | tig0025562:6609-6628 | None:intergenic | 40.0% | |
| CCTCATTGAAAACAAGCATC+AGG | + | tig0025562:6623-6642 | None:intergenic | 40.0% | |
| !! | CCTGATGCTTGTTTTCAATG+AGG | - | tig0025562:6620-6639 | Msa1423540:intron | 40.0% |
| AAGCTAGGTAATCTCAGAAG+TGG | + | tig0025562:6892-6911 | None:intergenic | 40.0% | |
| GTCATCACTAACCAAAAGCT+AGG | + | tig0025562:6907-6926 | None:intergenic | 40.0% | |
| ! | ATGACCTTCAGTGGAGTTTT+GGG | - | tig0025562:6922-6941 | Msa1423540:CDS | 40.0% |
| TTGATGAAGAAACCACATGG+AGG | + | tig0025562:6965-6984 | None:intergenic | 40.0% | |
| GTGGTTTCTTCATCAAACAG+GGG | - | tig0025562:6969-6988 | Msa1423540:CDS | 40.0% | |
| !! | TTTGACTTGAGTTAGAACCG+TGG | + | tig0025562:7156-7175 | None:intergenic | 40.0% |
| GCAGATGGCAAACTAGTTAT+TGG | + | tig0025562:7263-7282 | None:intergenic | 40.0% | |
| ! | AATGCAAATTGCAGGGCTTT+TGG | - | tig0025562:7488-7507 | Msa1423540:CDS | 40.0% |
| ! | TTTTCGCTAGAGCCAAAATC+CGG | - | tig0025562:7520-7539 | Msa1423540:CDS | 40.0% |
| CAATCCTGAAGAGCAGTATA+AGG | - | tig0025562:7552-7571 | Msa1423540:five_prime_UTR | 40.0% | |
| ! | TCTGTGGTATTTGATTTCCG+GGG | - | tig0025562:7586-7605 | Msa1423540:five_prime_UTR | 40.0% |
| TTGAACTTCTAACTTCACCC+CGG | + | tig0025562:7606-7625 | None:intergenic | 40.0% | |
| GTGAAGTTAGAAGTTCAACC+TGG | - | tig0025562:7608-7627 | Msa1423540:five_prime_UTR | 40.0% | |
| ! | AAGTTCAACCTGGGATTTTG+AGG | - | tig0025562:7618-7637 | Msa1423540:five_prime_UTR | 40.0% |
| ! | AACTATCTCACCCTTTAGAG+AGG | - | tig0025562:7670-7689 | Msa1423540:five_prime_UTR | 40.0% |
| CACAAATCACACCTCTCTAA+AGG | + | tig0025562:7684-7703 | None:intergenic | 40.0% | |
| !! | CTTCTCTGAGGGATAGTTTT+TGG | - | tig0025562:7718-7737 | Msa1423540:five_prime_UTR | 40.0% |
| CGAATTAGATCCAAACGAAC+AGG | + | tig0025562:7746-7765 | None:intergenic | 40.0% | |
| TTGGATTGCATTGCTAGCAA+TGG | - | tig0025562:7777-7796 | Msa1423540:five_prime_UTR | 40.0% | |
| ! | AGGGTCACATTTTCATGTGA+AGG | - | tig0025562:7947-7966 | Msa1423540:five_prime_UTR | 40.0% |
| TCGAGGAGAAAAACCCATGA+AGG | + | tig0025562:2976-2995 | None:intergenic | 45.0% | |
| CATCGTACTACACTCAACAC+AGG | - | tig0025562:3063-3082 | Msa1423540:three_prime_UTR | 45.0% | |
| AGTCAATCCAATCAGGTCCT+TGG | - | tig0025562:3611-3630 | Msa1423540:intron | 45.0% | |
| TACAGATCCAAGGACCTGAT+TGG | + | tig0025562:3621-3640 | None:intergenic | 45.0% | |
| CAACTGAACCACTAACATGG+AGG | - | tig0025562:3736-3755 | Msa1423540:CDS | 45.0% | |
| TCATCTTCCAAAGGGGATGA+TGG | - | tig0025562:3889-3908 | Msa1423540:intron | 45.0% | |
| ! | GGAGGCAGATAATTTGTGAC+TGG | - | tig0025562:3910-3929 | Msa1423540:intron | 45.0% |
| AACTAGGCTACCCATCTTAC+AGG | + | tig0025562:4871-4890 | None:intergenic | 45.0% | |
| TGTAAGATGGGTAGCCTAGT+TGG | - | tig0025562:4870-4889 | Msa1423540:intron | 45.0% | |
| CCCATCATGGAAAATGGCTT+TGG | - | tig0025562:5035-5054 | Msa1423540:intron | 45.0% | |
| CTTGTGTGCTCCCCAAAAAT+AGG | + | tig0025562:5335-5354 | None:intergenic | 45.0% | |
| !! | ACACAAGCTCTGAACTCTTG+AGG | - | tig0025562:5348-5367 | Msa1423540:intron | 45.0% |
| ACGAATGTCATAACTGCCGT+TGG | - | tig0025562:5556-5575 | Msa1423540:intron | 45.0% | |
| TTGTTCAGTAAGCACCACGA+AGG | - | tig0025562:5589-5608 | Msa1423540:intron | 45.0% | |
| !! | CTGGGCTGCTCTATTTCTAA+TGG | - | tig0025562:5618-5637 | Msa1423540:intron | 45.0% |
| !! | CAAAGTGGGGGTATCAAACA+CGG | + | tig0025562:5680-5699 | None:intergenic | 45.0% |
| TTGATACCCCCACTTTGATG+TGG | - | tig0025562:5683-5702 | Msa1423540:intron | 45.0% | |
| GTATATGTTGGCAACAGCAC+CGG | + | tig0025562:5772-5791 | None:intergenic | 45.0% | |
| TTTCCAAAGGTCGAATACCG+TGG | - | tig0025562:5805-5824 | Msa1423540:intron | 45.0% | |
| TTCCAAAGGTCGAATACCGT+GGG | - | tig0025562:5806-5825 | Msa1423540:intron | 45.0% | |
| CTTACCATTCTGTTACTGCC+TGG | - | tig0025562:6347-6366 | Msa1423540:intron | 45.0% | |
| TGGTTAGTGATGACCTTCAG+TGG | - | tig0025562:6913-6932 | Msa1423540:CDS | 45.0% | |
| ! | GATGACCTTCAGTGGAGTTT+TGG | - | tig0025562:6921-6940 | Msa1423540:CDS | 45.0% |
| TAGACCCAAAACTCCACTGA+AGG | + | tig0025562:6929-6948 | None:intergenic | 45.0% | |
| ! | CAATTAGCTTCACCTCCATG+TGG | - | tig0025562:6950-6969 | Msa1423540:CDS | 45.0% |
| AAACAGGGGCTACAACTTAC+AGG | - | tig0025562:6983-7002 | Msa1423540:CDS | 45.0% | |
| ! | TTTGCCATCTGCAGTCTTGT+AGG | - | tig0025562:7271-7290 | Msa1423540:intron | 45.0% |
| AAGATACCACTCTCAGTTGC+TGG | - | tig0025562:7304-7323 | Msa1423540:intron | 45.0% | |
| GCAGAGTTCTCCAAACTTGT+AGG | + | tig0025562:7349-7368 | None:intergenic | 45.0% | |
| CATTCTTGGTTCAACGCTGA+AGG | - | tig0025562:7461-7480 | Msa1423540:CDS | 45.0% | |
| TTTCGCTAGAGCCAAAATCC+GGG | - | tig0025562:7521-7540 | Msa1423540:CDS | 45.0% | |
| ! | TTGAGATCTCTCCCGGATTT+TGG | + | tig0025562:7535-7554 | None:intergenic | 45.0% |
| TTCAGGATTGAGATCTCTCC+CGG | + | tig0025562:7542-7561 | None:intergenic | 45.0% | |
| CTAATTCGGGAAGAGTTGCT+TGG | - | tig0025562:7758-7777 | Msa1423540:five_prime_UTR | 45.0% | |
| GATTGCATTGCTAGCAATGG+AGG | - | tig0025562:7780-7799 | Msa1423540:five_prime_UTR | 45.0% | |
| CGTACTACACTCAACACAGG+CGG | - | tig0025562:3066-3085 | Msa1423540:three_prime_UTR | 50.0% | |
| ! | AATTGCGCCGCTTTGAATCG+CGG | + | tig0025562:3122-3141 | None:intergenic | 50.0% |
| ! | TCTTCCAAAGGGGATGATGG+AGG | - | tig0025562:3892-3911 | Msa1423540:intron | 50.0% |
| AGGAGGCCAAGGAAAACTAG+AGG | - | tig0025562:4918-4937 | Msa1423540:intron | 50.0% | |
| !!! | CCATGGCCTCTAGTTTTCCT+TGG | + | tig0025562:4927-4946 | None:intergenic | 50.0% |
| CCAAGGAAAACTAGAGGCCA+TGG | - | tig0025562:4924-4943 | Msa1423540:intron | 50.0% | |
| TTCCCACGGTATTCGACCTT+TGG | + | tig0025562:5811-5830 | None:intergenic | 50.0% | |
| GCATCCAGGCAGTAACAGAA+TGG | + | tig0025562:6354-6373 | None:intergenic | 50.0% | |
| TATTGCAGCTGACCCTACGA+AGG | - | tig0025562:6499-6518 | Msa1423540:intron | 50.0% | |
| ATTGCAGCTGACCCTACGAA+GGG | - | tig0025562:6500-6519 | Msa1423540:intron | 50.0% | |
| CGTATCCATGACCCTTCGTA+GGG | + | tig0025562:6514-6533 | None:intergenic | 50.0% | |
| CCTACGAAGGGTCATGGATA+CGG | - | tig0025562:6512-6531 | Msa1423540:intron | 50.0% | |
| CGAACCTACAAGACTGCAGA+TGG | + | tig0025562:7278-7297 | None:intergenic | 50.0% | |
| ! | CAAATTGCAGGGCTTTTGGC+AGG | - | tig0025562:7492-7511 | Msa1423540:CDS | 50.0% |
| TGACGACACCTCAAAATCCC+AGG | + | tig0025562:7629-7648 | None:intergenic | 50.0% | |
| !!! | GTTTTTGGCCCCTGTTCGTT+TGG | - | tig0025562:7733-7752 | Msa1423540:five_prime_UTR | 50.0% |
| TCTGCCTCCATCATCCCCTT+TGG | + | tig0025562:3899-3918 | None:intergenic | 55.0% | |
| !! | TTGGCAACAGCACCGGTTGT+AGG | + | tig0025562:5765-5784 | None:intergenic | 55.0% |
| CCGTATCCATGACCCTTCGT+AGG | + | tig0025562:6515-6534 | None:intergenic | 55.0% | |
| GGGGCTACAACTTACAGGTG+TGG | - | tig0025562:6988-7007 | Msa1423540:CDS | 55.0% | |
| AGGATGCCAGCAACTGAGAG+TGG | + | tig0025562:7313-7332 | None:intergenic | 55.0% | |
| ACACTCAACACAGGCGGAGC+TGG | - | tig0025562:3072-3091 | Msa1423540:three_prime_UTR | 60.0% | |
| AGCACCACGAAGGCAGAGTC+TGG | - | tig0025562:5599-5618 | Msa1423540:intron | 60.0% | |
| GCACCACGAAGGCAGAGTCT+GGG | - | tig0025562:5600-5619 | Msa1423540:intron | 60.0% | |
| GCTGACCCTACGAAGGGTCA+TGG | - | tig0025562:6506-6525 | Msa1423540:intron | 60.0% | |
| CTCAACACAGGCGGAGCTGG+TGG | - | tig0025562:3075-3094 | Msa1423540:three_prime_UTR | 65.0% | |
| ACACAGGCGGAGCTGGTGGT+CGG | - | tig0025562:3079-3098 | Msa1423540:three_prime_UTR | 65.0% | |
| ! | CGCTTTGAATCGCGGTGGCG+CGG | + | tig0025562:3114-3133 | None:intergenic | 65.0% |
| CGCGCCACCGCGATTCAAAG+CGG | - | tig0025562:3112-3131 | Msa1423540:three_prime_UTR | 65.0% | |
| ! | TGCGCCGCTTTGAATCGCGG+TGG | + | tig0025562:3119-3138 | None:intergenic | 65.0% |
| CAGCCCAGACTCTGCCTTCG+TGG | + | tig0025562:5606-5625 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025562 | gene | 2654 | 8050 | 2654 | ID=Msa1423540;Name=Msa1423540 |
| tig0025562 | mRNA | 2654 | 8050 | 2654 | ID=Msa1423540-mRNA-1;Parent=Msa1423540;Name=Msa1423540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=499|1|1|1|1|1|8|490|342 |
| tig0025562 | exon | 2654 | 3202 | 2654 | ID=Msa1423540-mRNA-1:exon:3324;Parent=Msa1423540-mRNA-1 |
| tig0025562 | exon | 3322 | 3419 | 3322 | ID=Msa1423540-mRNA-1:exon:3323;Parent=Msa1423540-mRNA-1 |
| tig0025562 | exon | 3700 | 3816 | 3700 | ID=Msa1423540-mRNA-1:exon:3322;Parent=Msa1423540-mRNA-1 |
| tig0025562 | exon | 4043 | 4197 | 4043 | ID=Msa1423540-mRNA-1:exon:3321;Parent=Msa1423540-mRNA-1 |
| tig0025562 | exon | 4416 | 4514 | 4416 | ID=Msa1423540-mRNA-1:exon:3320;Parent=Msa1423540-mRNA-1 |
| tig0025562 | exon | 5065 | 5194 | 5065 | ID=Msa1423540-mRNA-1:exon:3319;Parent=Msa1423540-mRNA-1 |
| tig0025562 | exon | 6881 | 7020 | 6881 | ID=Msa1423540-mRNA-1:exon:3318;Parent=Msa1423540-mRNA-1 |
| tig0025562 | exon | 7321 | 8050 | 7321 | ID=Msa1423540-mRNA-1:exon:3317;Parent=Msa1423540-mRNA-1 |
| tig0025562 | five_prime_UTR | 7552 | 8050 | 7552 | ID=Msa1423540-mRNA-1:five_prime_utr;Parent=Msa1423540-mRNA-1 |
| tig0025562 | CDS | 7321 | 7551 | 7321 | ID=Msa1423540-mRNA-1:cds;Parent=Msa1423540-mRNA-1 |
| tig0025562 | CDS | 6881 | 7020 | 6881 | ID=Msa1423540-mRNA-1:cds;Parent=Msa1423540-mRNA-1 |
| tig0025562 | CDS | 5065 | 5194 | 5065 | ID=Msa1423540-mRNA-1:cds;Parent=Msa1423540-mRNA-1 |
| tig0025562 | CDS | 4416 | 4514 | 4416 | ID=Msa1423540-mRNA-1:cds;Parent=Msa1423540-mRNA-1 |
| tig0025562 | CDS | 4043 | 4197 | 4043 | ID=Msa1423540-mRNA-1:cds;Parent=Msa1423540-mRNA-1 |
| tig0025562 | CDS | 3700 | 3816 | 3700 | ID=Msa1423540-mRNA-1:cds;Parent=Msa1423540-mRNA-1 |
| tig0025562 | CDS | 3322 | 3419 | 3322 | ID=Msa1423540-mRNA-1:cds;Parent=Msa1423540-mRNA-1 |
| tig0025562 | CDS | 3144 | 3202 | 3144 | ID=Msa1423540-mRNA-1:cds;Parent=Msa1423540-mRNA-1 |
| tig0025562 | three_prime_UTR | 2654 | 3143 | 2654 | ID=Msa1423540-mRNA-1:three_prime_utr;Parent=Msa1423540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
