Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221830 | XP_003597211.2 | 92.279 | 272 | 16 | 2 | 1 | 268 | 14 | 284 | 8.66e-156 | 445 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221830 | sp|Q8LEJ6|FLA11_ARATH | 49.704 | 169 | 83 | 2 | 43 | 209 | 27 | 195 | 3.13e-46 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221830 | G7IRP6 | 92.279 | 272 | 16 | 2 | 1 | 268 | 14 | 284 | 4.14e-156 | 445 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018060 | Msa0221830 | 0.801346 | 9.401366e-49 | -8.615850e-47 |
| Msa0052380 | Msa0221830 | 0.822000 | 2.993382e-53 | -8.615850e-47 |
| Msa0097390 | Msa0221830 | 0.826387 | 2.789688e-54 | -8.615850e-47 |
| Msa0221830 | Msa0250450 | 0.808396 | 3.161519e-50 | -8.615850e-47 |
| Msa0221830 | Msa0301030 | 0.834053 | 3.743943e-56 | -8.615850e-47 |
| Msa0221830 | Msa0485970 | 0.881151 | 3.045489e-70 | -8.615850e-47 |
| Msa0221830 | Msa0547390 | 0.819882 | 9.196577e-53 | -8.615850e-47 |
| Msa0221830 | Msa0564950 | 0.847982 | 8.190845e-60 | -8.615850e-47 |
| Msa0221830 | Msa0580580 | 0.876151 | 1.753867e-68 | -8.615850e-47 |
| Msa0221830 | Msa0618050 | 0.878063 | 3.801498e-69 | -8.615850e-47 |
| Msa0221830 | Msa0618600 | 0.823466 | 1.364503e-53 | -8.615850e-47 |
| Msa0221830 | Msa0657380 | 0.803705 | 3.068782e-49 | -8.615850e-47 |
| Msa0221830 | Msa0708510 | 0.819559 | 1.089930e-52 | -8.615850e-47 |
| Msa0221830 | Msa1162860 | 0.810514 | 1.109928e-50 | -8.615850e-47 |
| Msa0221830 | Msa1199260 | 0.818782 | 1.637375e-52 | -8.615850e-47 |
| Msa0221830 | Msa1252480 | 0.818777 | 1.641924e-52 | -8.615850e-47 |
| Msa0221830 | Msa1290460 | 0.824576 | 7.487934e-54 | -8.615850e-47 |
| Msa0221830 | Msa1418990 | 0.815112 | 1.092219e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221830 | MtrunA17_Chr2g0326421 | 92.279 | 272 | 16 | 2 | 1 | 268 | 14 | 284 | 7.97e-160 | 445 |
| Msa0221830 | MtrunA17_Chr4g0029431 | 63.985 | 261 | 81 | 5 | 16 | 268 | 25 | 280 | 3.93e-90 | 268 |
| Msa0221830 | MtrunA17_Chr2g0284411 | 57.692 | 208 | 84 | 2 | 51 | 258 | 67 | 270 | 2.24e-75 | 231 |
| Msa0221830 | MtrunA17_Chr2g0284431 | 56.338 | 213 | 89 | 2 | 51 | 263 | 88 | 296 | 2.29e-74 | 229 |
| Msa0221830 | MtrunA17_Chr4g0026611 | 52.083 | 240 | 103 | 4 | 16 | 243 | 34 | 273 | 2.25e-73 | 226 |
| Msa0221830 | MtrunA17_Chr4g0029501 | 55.300 | 217 | 82 | 5 | 38 | 240 | 53 | 268 | 1.22e-72 | 224 |
| Msa0221830 | MtrunA17_Chr8g0379611 | 48.718 | 273 | 113 | 5 | 14 | 265 | 22 | 288 | 2.61e-71 | 221 |
| Msa0221830 | MtrunA17_Chr4g0029441 | 56.219 | 201 | 74 | 4 | 38 | 224 | 53 | 253 | 1.26e-70 | 219 |
| Msa0221830 | MtrunA17_Chr2g0326411 | 49.187 | 246 | 117 | 3 | 4 | 243 | 17 | 260 | 4.52e-65 | 205 |
| Msa0221830 | MtrunA17_Chr8g0379621 | 51.667 | 240 | 96 | 7 | 7 | 236 | 52 | 281 | 1.05e-63 | 202 |
| Msa0221830 | MtrunA17_Chr8g0379631 | 51.883 | 239 | 95 | 7 | 8 | 236 | 53 | 281 | 3.09e-63 | 201 |
| Msa0221830 | MtrunA17_Chr2g0284451 | 51.883 | 239 | 93 | 8 | 12 | 231 | 23 | 258 | 2.34e-61 | 195 |
| Msa0221830 | MtrunA17_Chr4g0029331 | 55.975 | 159 | 69 | 1 | 45 | 203 | 55 | 212 | 6.43e-57 | 183 |
| Msa0221830 | MtrunA17_Chr2g0326431 | 60.403 | 149 | 58 | 1 | 52 | 200 | 41 | 188 | 3.94e-54 | 175 |
| Msa0221830 | MtrunA17_Chr7g0263981 | 47.403 | 154 | 79 | 2 | 48 | 200 | 36 | 188 | 1.19e-41 | 143 |
| Msa0221830 | MtrunA17_Chr2g0325021 | 34.091 | 220 | 135 | 2 | 43 | 262 | 29 | 238 | 8.71e-25 | 99.4 |
| Msa0221830 | MtrunA17_Chr5g0448001 | 33.526 | 173 | 105 | 5 | 52 | 219 | 48 | 215 | 2.67e-16 | 76.6 |
| Msa0221830 | MtrunA17_Chr2g0296571 | 29.412 | 153 | 101 | 3 | 52 | 200 | 195 | 344 | 4.31e-13 | 68.6 |
| Msa0221830 | MtrunA17_Chr7g0246041 | 30.675 | 163 | 97 | 4 | 52 | 209 | 184 | 335 | 4.89e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0221830 | AT5G03170.1 | 49.704 | 169 | 83 | 2 | 43 | 209 | 27 | 195 | 3.19e-47 | 158 |
| Msa0221830 | AT5G60490.1 | 47.333 | 150 | 77 | 2 | 52 | 200 | 39 | 187 | 9.33e-43 | 146 |
| Msa0221830 | AT5G44130.1 | 38.298 | 188 | 104 | 4 | 52 | 237 | 36 | 213 | 6.70e-29 | 110 |
| Msa0221830 | AT2G20520.1 | 35.437 | 206 | 127 | 5 | 40 | 240 | 25 | 229 | 3.05e-27 | 106 |
| Msa0221830 | AT1G03870.1 | 32.461 | 191 | 125 | 3 | 52 | 241 | 39 | 226 | 4.59e-24 | 97.8 |
| Msa0221830 | AT3G46550.1 | 28.571 | 182 | 119 | 5 | 27 | 200 | 179 | 357 | 4.84e-13 | 68.9 |
| Msa0221830 | AT3G60900.1 | 28.409 | 176 | 116 | 4 | 37 | 209 | 175 | 343 | 6.72e-11 | 62.4 |
Find 48 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTCAATGGAAGCTTTAA+AGG | 0.264173 | 2_1:+70631491 | None:intergenic |
| GACTTTGTCTTATCAGCTTT+TGG | 0.266108 | 2_1:+70631293 | None:intergenic |
| TGCTTCCTCTTGATTTCTTT+AGG | 0.267827 | 2_1:-70631358 | Msa0221830:CDS |
| GTGGTTAATGCTACTGTTAC+TGG | 0.308670 | 2_1:-70631431 | Msa0221830:CDS |
| GTTGCTGTTGCTGCCGCGTT+GGG | 0.332898 | 2_1:+70631917 | None:intergenic |
| GGTGCTATTGCTTCCGCAAC+AGG | 0.352341 | 2_1:+70631314 | None:intergenic |
| TCTGGTAATGTTGGGACTAA+TGG | 0.353632 | 2_1:+70631830 | None:intergenic |
| TTACCAGCCACTGTCTCAAC+AGG | 0.354909 | 2_1:+70631518 | None:intergenic |
| GTGAAATGAGTTGTGAGTTT+AGG | 0.360618 | 2_1:+70631705 | None:intergenic |
| CAAGCTTGCTATATATCGTT+TGG | 0.363154 | 2_1:-70631390 | Msa0221830:CDS |
| TCCGCAACAGGAGCAGCAGC+AGG | 0.370904 | 2_1:+70631326 | None:intergenic |
| GGAACAACATTGAAGTCTAT+TGG | 0.380617 | 2_1:-70631191 | Msa0221830:CDS |
| TTTGGTGCCGGGACATGTTT+CGG | 0.398151 | 2_1:+70631878 | None:intergenic |
| GATGTTGGTGATGCTGCTTT+TGG | 0.401270 | 2_1:+70631860 | None:intergenic |
| TGCTATATATCGTTTGGATA+AGG | 0.401381 | 2_1:-70631384 | Msa0221830:CDS |
| TCTGGAGCAGTGAGTTTACT+TGG | 0.406395 | 2_1:-70631221 | Msa0221830:CDS |
| TCTTGATTTCTTTAGGACTA+AGG | 0.409268 | 2_1:-70631351 | Msa0221830:CDS |
| TGTTGCTGTTGCTGCCGCGT+TGG | 0.413271 | 2_1:+70631916 | None:intergenic |
| ATCAGTGTTAGTCTTTCAAC+TGG | 0.416356 | 2_1:-70631455 | Msa0221830:CDS |
| GCTTTCTCACATCTCAAAGC+AGG | 0.456572 | 2_1:-70631641 | Msa0221830:CDS |
| TGTTCAATGGAAGCTTTAAA+GGG | 0.463949 | 2_1:+70631492 | None:intergenic |
| CCATTGAACATCGAATCGTT+TGG | 0.464845 | 2_1:-70631479 | Msa0221830:CDS |
| TTGTTGCAGTGGCCTTGGTA+TGG | 0.476263 | 2_1:-70631160 | Msa0221830:CDS |
| ACCTGCTGCTGCTCCTGTTG+CGG | 0.486624 | 2_1:-70631327 | Msa0221830:CDS |
| CCAAACGATTCGATGTTCAA+TGG | 0.503629 | 2_1:+70631479 | None:intergenic |
| TGTTAGTCTTTCAACTGGTG+TGG | 0.506614 | 2_1:-70631450 | Msa0221830:CDS |
| TCTGAGGTGTCTGGTAATGT+TGG | 0.510374 | 2_1:+70631821 | None:intergenic |
| ACATGTTTCGGTGACGCTGC+TGG | 0.514319 | 2_1:+70631890 | None:intergenic |
| TGTGAGAAAGCTGAGTCATC+CGG | 0.520744 | 2_1:+70631653 | None:intergenic |
| CTGAGGTGTCTGGTAATGTT+GGG | 0.532113 | 2_1:+70631822 | None:intergenic |
| AGCGTCACCGAAACATGTCC+CGG | 0.558952 | 2_1:-70631885 | Msa0221830:CDS |
| CAACAAACTGTGGAAGAATG+TGG | 0.559737 | 2_1:+70631570 | None:intergenic |
| GTCGTCCGGGGTGGAATCTG+AGG | 0.559966 | 2_1:+70631805 | None:intergenic |
| AACCCTGTTGAGACAGTGGC+TGG | 0.569511 | 2_1:-70631521 | Msa0221830:CDS |
| GGGGTGGAATCTGAGGTGTC+TGG | 0.574659 | 2_1:+70631812 | None:intergenic |
| CTTTCTCACATCTCAAAGCA+GGG | 0.577178 | 2_1:-70631640 | Msa0221830:CDS |
| CGAGGATGATACAACAACTC+AGG | 0.581254 | 2_1:-70631255 | Msa0221830:CDS |
| TTAGTCCTAAAGAAATCAAG+AGG | 0.587337 | 2_1:+70631353 | None:intergenic |
| GTGAGTTTACTTGGAATGCA+AGG | 0.589105 | 2_1:-70631212 | Msa0221830:CDS |
| CGGATTAACAATCTTAGCAC+CGG | 0.603845 | 2_1:-70631672 | Msa0221830:CDS |
| TAGTAACCCTGTTGAGACAG+TGG | 0.611903 | 2_1:-70631525 | Msa0221830:CDS |
| GTCTTCTTCTGAAGAAGACG+AGG | 0.632494 | 2_1:-70631273 | Msa0221830:CDS |
| TACCAGCCACTGTCTCAACA+GGG | 0.663127 | 2_1:+70631519 | None:intergenic |
| CTCATTGTATTCTCCCAACG+CGG | 0.668766 | 2_1:-70631930 | Msa0221830:CDS |
| TTATTGCTATCAACAAACTG+TGG | 0.684733 | 2_1:+70631560 | None:intergenic |
| CGCGTTGGGAGAATACAATG+AGG | 0.706376 | 2_1:+70631931 | None:intergenic |
| TGTTCTTCAACTCCATACCA+AGG | 0.715577 | 2_1:+70631148 | None:intergenic |
| AGACACCTCAGATTCCACCC+CGG | 0.745070 | 2_1:-70631810 | Msa0221830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CATAACAAAAATCCTCAAAA+AGG | - | chr2_1:70631309-70631328 | Msa0221830:CDS | 25.0% |
| ! | CATAACAAAAATCCTCAAAA+AGG | - | chr2_1:70631309-70631328 | Msa0221830:CDS | 25.0% |
| !!! | TTTGTGTTGTTTTTAGGAGA+CGG | + | chr2_1:70631357-70631376 | None:intergenic | 30.0% |
| TTATTGCTATCAACAAACTG+TGG | + | chr2_1:70631535-70631554 | None:intergenic | 30.0% | |
| !! | TGTTCAATGGAAGCTTTAAA+GGG | + | chr2_1:70631603-70631622 | None:intergenic | 30.0% |
| ! | ATGTTCAATGGAAGCTTTAA+AGG | + | chr2_1:70631604-70631623 | None:intergenic | 30.0% |
| TGCTATATATCGTTTGGATA+AGG | - | chr2_1:70631708-70631727 | Msa0221830:CDS | 30.0% | |
| TTAGTCCTAAAGAAATCAAG+AGG | + | chr2_1:70631742-70631761 | None:intergenic | 30.0% | |
| !! | TCTTGATTTCTTTAGGACTA+AGG | - | chr2_1:70631741-70631760 | Msa0221830:CDS | 30.0% |
| ACTCAGGATAAAAAAAGTTC+TGG | - | chr2_1:70631853-70631872 | Msa0221830:CDS | 30.0% | |
| !!! | TTTGTGTTGTTTTTAGGAGA+CGG | + | chr2_1:70631357-70631376 | None:intergenic | 30.0% |
| TTATTGCTATCAACAAACTG+TGG | + | chr2_1:70631535-70631554 | None:intergenic | 30.0% | |
| !! | TGTTCAATGGAAGCTTTAAA+GGG | + | chr2_1:70631603-70631622 | None:intergenic | 30.0% |
| ! | ATGTTCAATGGAAGCTTTAA+AGG | + | chr2_1:70631604-70631623 | None:intergenic | 30.0% |
| TGCTATATATCGTTTGGATA+AGG | - | chr2_1:70631708-70631727 | Msa0221830:CDS | 30.0% | |
| TTAGTCCTAAAGAAATCAAG+AGG | + | chr2_1:70631742-70631761 | None:intergenic | 30.0% | |
| !! | TCTTGATTTCTTTAGGACTA+AGG | - | chr2_1:70631741-70631760 | Msa0221830:CDS | 30.0% |
| ACTCAGGATAAAAAAAGTTC+TGG | - | chr2_1:70631853-70631872 | Msa0221830:CDS | 30.0% | |
| !!! | ACTAATGGTTTTGTCGATGT+TGG | + | chr2_1:70631250-70631269 | None:intergenic | 35.0% |
| !! | AGGATTTTTGTTATGTCGTC+CGG | + | chr2_1:70631304-70631323 | None:intergenic | 35.0% |
| ! | TGAATGTTTTCGCCTTTTTG+AGG | + | chr2_1:70631324-70631343 | None:intergenic | 35.0% |
| !!! | TTGTGTTGTTTTTAGGAGAC+GGG | + | chr2_1:70631356-70631375 | None:intergenic | 35.0% |
| !!! | CCACGATTTGTGTTGTTTTT+AGG | + | chr2_1:70631363-70631382 | None:intergenic | 35.0% |
| CCTAAAAACAACACAAATCG+TGG | - | chr2_1:70631360-70631379 | Msa0221830:CDS | 35.0% | |
| GTGAAATGAGTTGTGAGTTT+AGG | + | chr2_1:70631390-70631409 | None:intergenic | 35.0% | |
| CAACTCATTTCACCAAAAAG+CGG | - | chr2_1:70631397-70631416 | Msa0221830:CDS | 35.0% | |
| !! | ATCAGTGTTAGTCTTTCAAC+TGG | - | chr2_1:70631637-70631656 | Msa0221830:CDS | 35.0% |
| !! | CAAGCTTGCTATATATCGTT+TGG | - | chr2_1:70631702-70631721 | Msa0221830:CDS | 35.0% |
| TGCTTCCTCTTGATTTCTTT+AGG | - | chr2_1:70631734-70631753 | Msa0221830:CDS | 35.0% | |
| ! | GACTTTGTCTTATCAGCTTT+TGG | + | chr2_1:70631802-70631821 | None:intergenic | 35.0% |
| GGAACAACATTGAAGTCTAT+TGG | - | chr2_1:70631901-70631920 | Msa0221830:CDS | 35.0% | |
| !!! | ACTAATGGTTTTGTCGATGT+TGG | + | chr2_1:70631250-70631269 | None:intergenic | 35.0% |
| !! | AGGATTTTTGTTATGTCGTC+CGG | + | chr2_1:70631304-70631323 | None:intergenic | 35.0% |
| ! | TGAATGTTTTCGCCTTTTTG+AGG | + | chr2_1:70631324-70631343 | None:intergenic | 35.0% |
| !!! | TTGTGTTGTTTTTAGGAGAC+GGG | + | chr2_1:70631356-70631375 | None:intergenic | 35.0% |
| !!! | CCACGATTTGTGTTGTTTTT+AGG | + | chr2_1:70631363-70631382 | None:intergenic | 35.0% |
| CCTAAAAACAACACAAATCG+TGG | - | chr2_1:70631360-70631379 | Msa0221830:CDS | 35.0% | |
| GTGAAATGAGTTGTGAGTTT+AGG | + | chr2_1:70631390-70631409 | None:intergenic | 35.0% | |
| CAACTCATTTCACCAAAAAG+CGG | - | chr2_1:70631397-70631416 | Msa0221830:CDS | 35.0% | |
| !! | ATCAGTGTTAGTCTTTCAAC+TGG | - | chr2_1:70631637-70631656 | Msa0221830:CDS | 35.0% |
| !! | CAAGCTTGCTATATATCGTT+TGG | - | chr2_1:70631702-70631721 | Msa0221830:CDS | 35.0% |
| TGCTTCCTCTTGATTTCTTT+AGG | - | chr2_1:70631734-70631753 | Msa0221830:CDS | 35.0% | |
| ! | GACTTTGTCTTATCAGCTTT+TGG | + | chr2_1:70631802-70631821 | None:intergenic | 35.0% |
| GGAACAACATTGAAGTCTAT+TGG | - | chr2_1:70631901-70631920 | Msa0221830:CDS | 35.0% | |
| ! | TCTGGTAATGTTGGGACTAA+TGG | + | chr2_1:70631265-70631284 | None:intergenic | 40.0% |
| !! | GATTTTTGTTATGTCGTCCG+GGG | + | chr2_1:70631302-70631321 | None:intergenic | 40.0% |
| !! | GGATTTTTGTTATGTCGTCC+GGG | + | chr2_1:70631303-70631322 | None:intergenic | 40.0% |
| !!! | TTGTTTTTAGGAGACGGGTT+AGG | + | chr2_1:70631351-70631370 | None:intergenic | 40.0% |
| !!! | ATTGTTAATCCGCCGCTTTT+TGG | + | chr2_1:70631412-70631431 | None:intergenic | 40.0% |
| CGGATTAACAATCTTAGCAC+CGG | - | chr2_1:70631420-70631439 | Msa0221830:CDS | 40.0% | |
| CTTTCTCACATCTCAAAGCA+GGG | - | chr2_1:70631452-70631471 | Msa0221830:CDS | 40.0% | |
| CAACAAACTGTGGAAGAATG+TGG | + | chr2_1:70631525-70631544 | None:intergenic | 40.0% | |
| CCAAACGATTCGATGTTCAA+TGG | + | chr2_1:70631616-70631635 | None:intergenic | 40.0% | |
| CCATTGAACATCGAATCGTT+TGG | - | chr2_1:70631613-70631632 | Msa0221830:CDS | 40.0% | |
| !! | TGTTAGTCTTTCAACTGGTG+TGG | - | chr2_1:70631642-70631661 | Msa0221830:CDS | 40.0% |
| GTGGTTAATGCTACTGTTAC+TGG | - | chr2_1:70631661-70631680 | Msa0221830:CDS | 40.0% | |
| GTGAGTTTACTTGGAATGCA+AGG | - | chr2_1:70631880-70631899 | Msa0221830:CDS | 40.0% | |
| ! | TCTGGTAATGTTGGGACTAA+TGG | + | chr2_1:70631265-70631284 | None:intergenic | 40.0% |
| !! | GATTTTTGTTATGTCGTCCG+GGG | + | chr2_1:70631302-70631321 | None:intergenic | 40.0% |
| !! | GGATTTTTGTTATGTCGTCC+GGG | + | chr2_1:70631303-70631322 | None:intergenic | 40.0% |
| !!! | TTGTTTTTAGGAGACGGGTT+AGG | + | chr2_1:70631351-70631370 | None:intergenic | 40.0% |
| !!! | ATTGTTAATCCGCCGCTTTT+TGG | + | chr2_1:70631412-70631431 | None:intergenic | 40.0% |
| CGGATTAACAATCTTAGCAC+CGG | - | chr2_1:70631420-70631439 | Msa0221830:CDS | 40.0% | |
| CTTTCTCACATCTCAAAGCA+GGG | - | chr2_1:70631452-70631471 | Msa0221830:CDS | 40.0% | |
| CAACAAACTGTGGAAGAATG+TGG | + | chr2_1:70631525-70631544 | None:intergenic | 40.0% | |
| CCAAACGATTCGATGTTCAA+TGG | + | chr2_1:70631616-70631635 | None:intergenic | 40.0% | |
| CCATTGAACATCGAATCGTT+TGG | - | chr2_1:70631613-70631632 | Msa0221830:CDS | 40.0% | |
| !! | TGTTAGTCTTTCAACTGGTG+TGG | - | chr2_1:70631642-70631661 | Msa0221830:CDS | 40.0% |
| GTGGTTAATGCTACTGTTAC+TGG | - | chr2_1:70631661-70631680 | Msa0221830:CDS | 40.0% | |
| GTGAGTTTACTTGGAATGCA+AGG | - | chr2_1:70631880-70631899 | Msa0221830:CDS | 40.0% | |
| CTCATTGTATTCTCCCAACG+CGG | - | chr2_1:70631162-70631181 | Msa0221830:CDS | 45.0% | |
| !!! | GATGTTGGTGATGCTGCTTT+TGG | + | chr2_1:70631235-70631254 | None:intergenic | 45.0% |
| ! | CTGAGGTGTCTGGTAATGTT+GGG | + | chr2_1:70631273-70631292 | None:intergenic | 45.0% |
| ! | TCTGAGGTGTCTGGTAATGT+TGG | + | chr2_1:70631274-70631293 | None:intergenic | 45.0% |
| CTCATTTCACCAAAAAGCGG+CGG | - | chr2_1:70631400-70631419 | Msa0221830:CDS | 45.0% | |
| TGTGAGAAAGCTGAGTCATC+CGG | + | chr2_1:70631442-70631461 | None:intergenic | 45.0% | |
| GCTTTCTCACATCTCAAAGC+AGG | - | chr2_1:70631451-70631470 | Msa0221830:CDS | 45.0% | |
| TAGTAACCCTGTTGAGACAG+TGG | - | chr2_1:70631567-70631586 | Msa0221830:CDS | 45.0% | |
| ! | GTCTTCTTCTGAAGAAGACG+AGG | - | chr2_1:70631819-70631838 | Msa0221830:CDS | 45.0% |
| CGAGGATGATACAACAACTC+AGG | - | chr2_1:70631837-70631856 | Msa0221830:CDS | 45.0% | |
| ! | TCTGGAGCAGTGAGTTTACT+TGG | - | chr2_1:70631871-70631890 | Msa0221830:CDS | 45.0% |
| ! | TGGAGTAGCTTTTGTTGCAG+TGG | - | chr2_1:70631921-70631940 | Msa0221830:CDS | 45.0% |
| CTCATTGTATTCTCCCAACG+CGG | - | chr2_1:70631162-70631181 | Msa0221830:CDS | 45.0% | |
| !!! | GATGTTGGTGATGCTGCTTT+TGG | + | chr2_1:70631235-70631254 | None:intergenic | 45.0% |
| ! | CTGAGGTGTCTGGTAATGTT+GGG | + | chr2_1:70631273-70631292 | None:intergenic | 45.0% |
| ! | TCTGAGGTGTCTGGTAATGT+TGG | + | chr2_1:70631274-70631293 | None:intergenic | 45.0% |
| CTCATTTCACCAAAAAGCGG+CGG | - | chr2_1:70631400-70631419 | Msa0221830:CDS | 45.0% | |
| TGTGAGAAAGCTGAGTCATC+CGG | + | chr2_1:70631442-70631461 | None:intergenic | 45.0% | |
| GCTTTCTCACATCTCAAAGC+AGG | - | chr2_1:70631451-70631470 | Msa0221830:CDS | 45.0% | |
| TAGTAACCCTGTTGAGACAG+TGG | - | chr2_1:70631567-70631586 | Msa0221830:CDS | 45.0% | |
| ! | GTCTTCTTCTGAAGAAGACG+AGG | - | chr2_1:70631819-70631838 | Msa0221830:CDS | 45.0% |
| CGAGGATGATACAACAACTC+AGG | - | chr2_1:70631837-70631856 | Msa0221830:CDS | 45.0% | |
| ! | TCTGGAGCAGTGAGTTTACT+TGG | - | chr2_1:70631871-70631890 | Msa0221830:CDS | 45.0% |
| ! | TGGAGTAGCTTTTGTTGCAG+TGG | - | chr2_1:70631921-70631940 | Msa0221830:CDS | 45.0% |
| CGCGTTGGGAGAATACAATG+AGG | + | chr2_1:70631164-70631183 | None:intergenic | 50.0% | |
| !! | TTTGGTGCCGGGACATGTTT+CGG | + | chr2_1:70631217-70631236 | None:intergenic | 50.0% |
| !! | TTTTGTTATGTCGTCCGGGG+TGG | + | chr2_1:70631299-70631318 | None:intergenic | 50.0% |
| TACCAGCCACTGTCTCAACA+GGG | + | chr2_1:70631576-70631595 | None:intergenic | 50.0% | |
| TTACCAGCCACTGTCTCAAC+AGG | + | chr2_1:70631577-70631596 | None:intergenic | 50.0% | |
| ! | AGCTTTTGTTGCAGTGGCCT+TGG | - | chr2_1:70631927-70631946 | Msa0221830:CDS | 50.0% |
| ! | TTGTTGCAGTGGCCTTGGTA+TGG | - | chr2_1:70631932-70631951 | Msa0221830:CDS | 50.0% |
| CGCGTTGGGAGAATACAATG+AGG | + | chr2_1:70631164-70631183 | None:intergenic | 50.0% | |
| !! | TTTGGTGCCGGGACATGTTT+CGG | + | chr2_1:70631217-70631236 | None:intergenic | 50.0% |
| !! | TTTTGTTATGTCGTCCGGGG+TGG | + | chr2_1:70631299-70631318 | None:intergenic | 50.0% |
| TACCAGCCACTGTCTCAACA+GGG | + | chr2_1:70631576-70631595 | None:intergenic | 50.0% | |
| TTACCAGCCACTGTCTCAAC+AGG | + | chr2_1:70631577-70631596 | None:intergenic | 50.0% | |
| ! | AGCTTTTGTTGCAGTGGCCT+TGG | - | chr2_1:70631927-70631946 | Msa0221830:CDS | 50.0% |
| ! | TTGTTGCAGTGGCCTTGGTA+TGG | - | chr2_1:70631932-70631951 | Msa0221830:CDS | 50.0% |
| ACATGTTTCGGTGACGCTGC+TGG | + | chr2_1:70631205-70631224 | None:intergenic | 55.0% | |
| AGCGTCACCGAAACATGTCC+CGG | - | chr2_1:70631207-70631226 | Msa0221830:CDS | 55.0% | |
| !!! | GTGATGCTGCTTTTGGTGCC+GGG | + | chr2_1:70631228-70631247 | None:intergenic | 55.0% |
| !!! | GGTGATGCTGCTTTTGGTGC+CGG | + | chr2_1:70631229-70631248 | None:intergenic | 55.0% |
| AGACACCTCAGATTCCACCC+CGG | - | chr2_1:70631282-70631301 | Msa0221830:CDS | 55.0% | |
| AACCCTGTTGAGACAGTGGC+TGG | - | chr2_1:70631571-70631590 | Msa0221830:CDS | 55.0% | |
| !! | GGTGCTATTGCTTCCGCAAC+AGG | + | chr2_1:70631781-70631800 | None:intergenic | 55.0% |
| ACATGTTTCGGTGACGCTGC+TGG | + | chr2_1:70631205-70631224 | None:intergenic | 55.0% | |
| AGCGTCACCGAAACATGTCC+CGG | - | chr2_1:70631207-70631226 | Msa0221830:CDS | 55.0% | |
| !!! | GTGATGCTGCTTTTGGTGCC+GGG | + | chr2_1:70631228-70631247 | None:intergenic | 55.0% |
| !!! | GGTGATGCTGCTTTTGGTGC+CGG | + | chr2_1:70631229-70631248 | None:intergenic | 55.0% |
| AGACACCTCAGATTCCACCC+CGG | - | chr2_1:70631282-70631301 | Msa0221830:CDS | 55.0% | |
| AACCCTGTTGAGACAGTGGC+TGG | - | chr2_1:70631571-70631590 | Msa0221830:CDS | 55.0% | |
| !! | GGTGCTATTGCTTCCGCAAC+AGG | + | chr2_1:70631781-70631800 | None:intergenic | 55.0% |
| ! | GTTGCTGTTGCTGCCGCGTT+GGG | + | chr2_1:70631178-70631197 | None:intergenic | 60.0% |
| ! | TGTTGCTGTTGCTGCCGCGT+TGG | + | chr2_1:70631179-70631198 | None:intergenic | 60.0% |
| ! | GGGGTGGAATCTGAGGTGTC+TGG | + | chr2_1:70631283-70631302 | None:intergenic | 60.0% |
| ACCTGCTGCTGCTCCTGTTG+CGG | - | chr2_1:70631765-70631784 | Msa0221830:CDS | 60.0% | |
| ! | GTTGCTGTTGCTGCCGCGTT+GGG | + | chr2_1:70631178-70631197 | None:intergenic | 60.0% |
| ! | TGTTGCTGTTGCTGCCGCGT+TGG | + | chr2_1:70631179-70631198 | None:intergenic | 60.0% |
| ! | GGGGTGGAATCTGAGGTGTC+TGG | + | chr2_1:70631283-70631302 | None:intergenic | 60.0% |
| ACCTGCTGCTGCTCCTGTTG+CGG | - | chr2_1:70631765-70631784 | Msa0221830:CDS | 60.0% | |
| GTCGTCCGGGGTGGAATCTG+AGG | + | chr2_1:70631290-70631309 | None:intergenic | 65.0% | |
| TCCGCAACAGGAGCAGCAGC+AGG | + | chr2_1:70631769-70631788 | None:intergenic | 65.0% | |
| GTCGTCCGGGGTGGAATCTG+AGG | + | chr2_1:70631290-70631309 | None:intergenic | 65.0% | |
| TCCGCAACAGGAGCAGCAGC+AGG | + | chr2_1:70631769-70631788 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 70631154 | 70631960 | 70631154 | ID=Msa0221830;Name=Msa0221830 |
| chr2_1 | mRNA | 70631154 | 70631960 | 70631154 | ID=Msa0221830-mRNA-1;Parent=Msa0221830;Name=Msa0221830-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|268 |
| chr2_1 | exon | 70631154 | 70631960 | 70631154 | ID=Msa0221830-mRNA-1:exon:20265;Parent=Msa0221830-mRNA-1 |
| chr2_1 | CDS | 70631154 | 70631960 | 70631154 | ID=Msa0221830-mRNA-1:cds;Parent=Msa0221830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
