AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1199260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1199260 MtrunA17_Chr8g0364641 99.185 981 8 0 1 981 1 981 0.0 2028
Msa1199260 MtrunA17_Chr4g0073711 63.506 1044 312 11 1 981 1 1038 0.0 1357
Msa1199260 MtrunA17_Chr3g0088821 54.766 1070 367 11 27 981 11 1078 0.0 1218
Msa1199260 MtrunA17_Chr2g0296991 54.928 1045 396 14 5 981 7 1044 0.0 1198
Msa1199260 MtrunA17_Chr8g0383701 50.091 1104 419 20 1 981 1 1095 0.0 1117
Msa1199260 MtrunA17_Chr2g0284211 54.443 979 400 14 37 980 9 976 0.0 1117
Msa1199260 MtrunA17_Chr8g0352231 59.188 887 301 7 152 981 196 1078 0.0 1116
Msa1199260 MtrunA17_Chr8g0352231 54.945 91 40 1 27 116 11 101 5.10e-25 112
Msa1199260 MtrunA17_Chr3g0078671 52.236 1051 430 13 1 981 1 1049 0.0 1114
Msa1199260 MtrunA17_Chr8g0379241 52.965 995 402 12 37 980 9 988 0.0 1098
Msa1199260 MtrunA17_Chr3g0137951 55.947 908 331 9 110 981 213 1087 0.0 1073
Msa1199260 MtrunA17_Chr3g0137951 42.922 219 102 5 1 206 1 209 5.62e-35 144
Msa1199260 MtrunA17_Chr1g0183381 55.928 894 360 11 98 981 35 904 0.0 1068
Msa1199260 MtrunA17_Chr1g0201731 57.913 872 312 10 157 981 233 1096 0.0 1050
Msa1199260 MtrunA17_Chr1g0201731 58.261 115 46 1 1 113 5 119 3.05e-36 148
Msa1199260 MtrunA17_Chr7g0267731 52.143 980 379 10 79 981 20 986 0.0 1043
Msa1199260 MtrunA17_Chr5g0410641 42.358 1060 495 24 3 964 66 1107 0.0 813
Msa1199260 MtrunA17_Chr4g0039801 42.347 1065 483 30 5 964 90 1128 0.0 790
Msa1199260 MtrunA17_Chr1g0165411 40.979 1042 494 24 7 964 85 1089 0.0 765
Msa1199260 MtrunA17_Chr1g0165421 39.621 1055 511 23 7 964 92 1117 0.0 757
Msa1199260 MtrunA17_Chr7g0269741 40.713 1066 490 27 7 964 125 1156 0.0 746
Msa1199260 MtrunA17_Chr2g0297351 44.534 869 382 20 184 964 154 1010 0.0 740
Msa1199260 MtrunA17_Chr7g0274751 39.720 856 336 25 163 964 69 798 0.0 562
Msa1199260 MtrunA17_Chr3g0102531 35.417 672 369 14 199 865 17 628 9.10e-131 412
Msa1199260 MtrunA17_Chr3g0102541 34.663 652 359 14 221 865 38 629 1.04e-125 399
Msa1199260 MtrunA17_Chr2g0322371 33.784 740 416 18 234 955 47 730 1.93e-122 390
Msa1199260 MtrunA17_Chr2g0322351 34.094 745 427 17 221 955 37 727 7.18e-122 389
Msa1199260 MtrunA17_Chr4g0046401 33.512 746 421 17 220 955 50 730 1.20e-121 388
Msa1199260 MtrunA17_Chr4g0025201 34.270 712 408 14 234 934 49 711 1.26e-121 388
Msa1199260 MtrunA17_Chr2g0322361 33.559 739 424 18 234 955 52 740 4.88e-121 387
Msa1199260 MtrunA17_Chr3g0102551 31.882 781 435 20 199 952 19 729 6.31e-121 386
Msa1199260 MtrunA17_Chr1g0186381 32.685 771 435 18 205 956 25 730 5.74e-118 378
Msa1199260 MtrunA17_Chr3g0095791 31.308 757 420 19 201 939 15 689 1.35e-112 362
Msa1199260 MtrunA17_Chr3g0077511 30.697 746 436 15 205 940 19 693 5.85e-108 350
Msa1199260 MtrunA17_Chr2g0298581 30.585 752 425 16 205 939 19 690 2.81e-107 348
Msa1199260 MtrunA17_Chr2g0307191 30.924 747 431 17 205 940 19 691 8.17e-104 339
Msa1199260 MtrunA17_Chr2g0322341 43.750 304 159 5 235 538 52 343 6.26e-80 264
Msa1199260 MtrunA17_Chr2g0322331 31.143 350 228 7 614 955 27 371 2.81e-45 167
Msa1199260 MtrunA17_Chr3g0126641 37.864 206 98 5 514 690 6 210 1.06e-36 137
Msa1199260 MtrunA17_Chr0c03g0490021 49.593 123 61 1 810 932 1 122 1.78e-34 128
Msa1199260 MtrunA17_Chr7g0252781 63.415 82 29 1 901 981 8 89 1.59e-28 109
Msa1199260 MtrunA17_Chr2g0307241 38.125 160 90 3 205 364 19 169 8.75e-28 112
Msa1199260 MtrunA17_Chr3g0094861 53.636 110 48 1 6 112 3 112 7.03e-27 112
Msa1199260 MtrunA17_Chr7g0267741 61.818 55 21 0 37 91 9 63 9.42e-21 87.0
Msa1199260 MtrunA17_Chr8g0355061 58.621 58 23 1 810 867 1 57 1.42e-20 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1199260 AT5G17420.1 64.175 1030 316 11 1 981 1 1026 0.0 1358
Msa1199260 AT5G05170.1 55.671 1058 364 11 27 981 10 1065 0.0 1245
Msa1199260 AT4G32410.1 55.150 1068 374 15 1 966 1 1065 0.0 1197
Msa1199260 AT2G25540.1 53.810 1050 396 13 7 969 1 1048 0.0 1170
Msa1199260 AT5G09870.1 52.093 1075 414 15 1 981 1 1068 0.0 1162
Msa1199260 AT4G18780.1 53.784 991 393 10 37 981 9 980 0.0 1111
Msa1199260 AT5G64740.1 49.034 1087 444 17 1 981 1 1083 0.0 1086
Msa1199260 AT2G21770.1 57.360 856 327 9 158 981 237 1086 0.0 1061
Msa1199260 AT2G21770.1 55.670 97 41 1 1 95 1 97 4.42e-27 119
Msa1199260 AT4G39350.1 58.563 835 305 8 182 981 254 1082 0.0 1050
Msa1199260 AT4G39350.1 60.825 97 36 1 1 95 1 97 2.97e-30 129
Msa1199260 AT3G03050.1 41.347 1069 488 28 5 964 93 1131 0.0 792
Msa1199260 AT5G16910.1 41.304 1058 506 25 5 964 91 1131 0.0 788
Msa1199260 AT4G38190.1 40.528 1061 484 25 5 964 78 1092 0.0 768
Msa1199260 AT1G02730.1 42.277 1010 462 20 58 964 177 1168 0.0 767
Msa1199260 AT2G33100.2 45.224 869 382 16 184 964 162 1024 0.0 753
Msa1199260 AT2G33100.1 45.224 869 382 16 184 964 162 1024 0.0 753
Msa1199260 AT1G32180.1 43.166 878 376 16 190 962 107 966 0.0 712
Msa1199260 AT1G32180.2 43.166 878 376 16 190 962 107 966 0.0 712
Msa1199260 AT5G44030.1 55.294 595 232 8 25 585 2 596 0.0 692
Msa1199260 AT5G44030.1 59.847 391 151 5 593 981 663 1049 7.40e-163 506
Msa1199260 AT5G44030.2 53.526 624 227 9 25 585 2 625 0.0 685
Msa1199260 AT5G44030.2 59.847 391 151 5 593 981 692 1078 1.37e-162 506
Msa1199260 AT5G44030.3 58.128 406 162 5 578 981 371 770 5.89e-166 505
Msa1199260 AT5G44030.3 68.038 316 100 1 270 584 1 316 2.46e-158 486
Msa1199260 AT4G23990.1 32.493 754 425 17 197 936 38 721 7.21e-121 387
Msa1199260 AT4G24000.1 30.932 805 455 23 182 968 1 722 1.48e-118 380
Msa1199260 AT4G24010.1 31.258 755 437 15 197 938 19 704 6.69e-118 379
Msa1199260 AT4G15320.5 33.033 778 432 24 189 934 10 730 1.74e-117 378
Msa1199260 AT4G15320.3 33.033 778 432 24 189 934 10 730 1.85e-117 378
Msa1199260 AT2G32530.1 34.901 659 371 14 189 839 10 618 9.36e-117 376
Msa1199260 AT1G55850.1 30.689 769 444 16 198 952 26 719 2.61e-116 374
Msa1199260 AT2G32620.1 32.392 744 423 18 221 936 39 730 4.81e-116 374
Msa1199260 AT2G32610.1 31.407 796 464 23 189 955 10 752 8.20e-115 371
Msa1199260 AT4G15320.4 33.038 790 431 26 189 934 10 745 2.21e-114 370
Msa1199260 AT4G15290.1 34.439 633 366 14 233 861 50 637 3.63e-113 366
Msa1199260 AT2G32540.1 30.993 755 443 17 233 960 50 753 5.16e-112 363
Msa1199260 AT2G32620.3 34.797 592 339 13 233 820 50 598 1.13e-110 355
Msa1199260 AT2G32620.4 32.842 679 383 16 286 936 1 634 2.28e-107 348
Msa1199260 AT4G15320.2 32.511 689 354 20 189 821 10 643 6.12e-103 340
Msa1199260 AT2G32620.2 36.634 505 277 10 233 733 50 515 1.67e-100 326
Msa1199260 AT4G15320.1 31.550 729 351 23 189 821 10 686 2.56e-95 320
Msa1199260 AT4G23990.2 32.177 519 289 10 426 936 44 507 2.50e-81 274
Msa1199260 AT4G24000.2 30.017 593 337 17 389 968 3 530 1.31e-80 272

Find 220 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTTCCCATTAGTCCTTTA+AGG 0.067110 8_1:+51226114 None:intergenic
CATCTTTATCCTTTCCTTAA+AGG 0.095284 8_1:-51226128 Msa1199260:CDS
GGTGGAGAAATCAACAATTT+TGG 0.111660 8_1:-51226442 Msa1199260:CDS
GAGAGAATATGAAGAGTTTA+AGG 0.157312 8_1:-51228805 Msa1199260:CDS
AGAAGCCATGTGTTTCTTTA+TGG 0.173329 8_1:-51228370 Msa1199260:CDS
AAATACGGTTCTTTCAATTT+TGG 0.190543 8_1:-51229261 Msa1199260:CDS
GTGACTATATTCAACATTAT+TGG 0.220024 8_1:-51226245 Msa1199260:CDS
TCCAATACTGTGAGAATATA+GGG 0.227543 8_1:+51230733 None:intergenic
AAGGATACTGAAAATAAATT+TGG 0.243965 8_1:-51227732 Msa1199260:CDS
TGTCATTTGGTCTGTGCTTT+TGG 0.246086 8_1:-51226069 Msa1199260:CDS
TTTGGCTCACATCATTCATT+TGG 0.251061 8_1:+51225940 None:intergenic
TCCTTTCCTTAAAGGACTAA+TGG 0.262867 8_1:-51226120 Msa1199260:CDS
TTCAGAAGGAAAGCTTTAAA+TGG 0.264003 8_1:-51227966 Msa1199260:CDS
GAAGAGGATGGGAGCATTAT+AGG 0.265683 8_1:-51227876 Msa1199260:intron
ATGAGAGGCAATGCACTAAA+AGG 0.265917 8_1:+51227109 None:intergenic
ATTGGGGCTGTTCCCCTAAA+AGG 0.269790 8_1:+51227283 None:intergenic
TCTATTGGAGAAAGCATATT+AGG 0.270639 8_1:+51229335 None:intergenic
AACATTATTGGTATTGTTGC+TGG 0.294324 8_1:-51226233 Msa1199260:CDS
TATTGAACAAGAATTTAAAA+TGG 0.304815 8_1:-51230834 Msa1199260:CDS
TGCAATTGTACAAGGCCTAA+TGG 0.307482 8_1:-51226390 Msa1199260:CDS
TCTTCATCTCCCTCCACTCT+TGG 0.309213 8_1:+51230875 None:intergenic
CACCAACTCTTGTTGTCATT+TGG 0.316180 8_1:-51226082 Msa1199260:CDS
GACTTAACCAAGTTCTTAGA+TGG 0.320378 8_1:-51227246 Msa1199260:CDS
CTCCAATACTGTGAGAATAT+AGG 0.322173 8_1:+51230732 None:intergenic
AGTCTTTCTGTAAGATTGAT+TGG 0.326570 8_1:+51227265 None:intergenic
ACGAACTGTACACCATTAGA+TGG 0.334995 8_1:-51226295 Msa1199260:CDS
TCTTTAAAACCATACCATAT+TGG 0.338395 8_1:+51227184 None:intergenic
ACAAGAGGTGGTTCCTTGAT+TGG 0.346756 8_1:+51229290 None:intergenic
GTCTTTCTGTAAGATTGATT+GGG 0.353577 8_1:+51227266 None:intergenic
TTGGACAGTGGCGGCTGAAT+AGG 0.364398 8_1:+51227203 None:intergenic
CGATCGATGGGAAACCATTT+GGG 0.368399 8_1:+51229756 None:intergenic
GCGATCGATGGGAAACCATT+TGG 0.369089 8_1:+51229755 None:intergenic
GCCACAACCATCATTCTATA+AGG 0.374205 8_1:+51229909 None:intergenic
CCTTTCCTTAAAGGACTAAT+GGG 0.379340 8_1:-51226119 Msa1199260:CDS
ATGATGATGATACAAAATAT+AGG 0.387941 8_1:-51230763 Msa1199260:CDS
TCAGCCGCCACTGTCCAATA+TGG 0.389539 8_1:-51227198 Msa1199260:CDS
TTGGCTCACATCATTCATTT+GGG 0.393045 8_1:+51225941 None:intergenic
GGGCCTGTTTATGTTGGATC+AGG 0.396892 8_1:-51227996 Msa1199260:CDS
TATCAGTATCATGTGAAATC+TGG 0.398754 8_1:-51229809 Msa1199260:CDS
GCAATTGTACAAGGCCTAAT+GGG 0.399734 8_1:-51226389 Msa1199260:CDS
GTTGTTATAAAGATATCTAT+TGG 0.402178 8_1:+51229320 None:intergenic
CATGAATGGGGAGCATTGAT+TGG 0.408338 8_1:-51226182 Msa1199260:CDS
TTCTTTATGGACATTCAACT+TGG 0.409379 8_1:-51228357 Msa1199260:CDS
CAACCTGATCCAACATAAAC+AGG 0.410475 8_1:+51227993 None:intergenic
AAATAGCGGTGAACATGAAT+GGG 0.412338 8_1:-51226195 Msa1199260:CDS
GTCTGTGGTTCTCCCTTGGC+TGG 0.418366 8_1:+51225620 None:intergenic
CATAATATATTGTATCGTTC+CGG 0.424683 8_1:-51227089 Msa1199260:CDS
CAGTCCAAGTTGAGCACAAA+AGG 0.427635 8_1:+51228426 None:intergenic
GTAGACAGTGCTGTTAATAT+AGG 0.428519 8_1:+51227132 None:intergenic
AGTATGATACAAATACTTCT+TGG 0.430810 8_1:-51228678 Msa1199260:CDS
TGAGAAGATAGACTTTCTTA+AGG 0.431779 8_1:-51229075 Msa1199260:CDS
TGATACGCTTGTATCTTGTA+TGG 0.434624 8_1:+51231203 None:intergenic
ATTGCTACTTTCCTTGATAG+TGG 0.435778 8_1:+51229951 None:intergenic
ACCTCTTGTTACAGCAAATA+CGG 0.435859 8_1:-51229276 Msa1199260:CDS
CTTCTATTCTTGAATTGAGA+TGG 0.438164 8_1:-51226487 Msa1199260:CDS
GACTGTCTTTGTGTCTGTGT+TGG 0.441991 8_1:-51225796 Msa1199260:three_prime_UTR
CATCCAGTACCTGATGCAAT+TGG 0.442733 8_1:-51229843 Msa1199260:CDS
TGATGATGATACAAAATATA+GGG 0.444845 8_1:-51230762 Msa1199260:CDS
CCCCTATATTCTCACAGTAT+TGG 0.447371 8_1:-51230734 Msa1199260:CDS
TGTACAAGTTCACTCAAAAC+AGG 0.447611 8_1:-51227907 Msa1199260:CDS
TAAATAGCGGTGAACATGAA+TGG 0.448788 8_1:-51226196 Msa1199260:CDS
GCAGATCAACTTGAGGTGTC+TGG 0.451877 8_1:-51228030 Msa1199260:intron
TTTGTGTTGTTTCCTGGCCA+TGG 0.452165 8_1:+51228711 None:intergenic
AGAAGTATTTGTATCATACT+TGG 0.453336 8_1:+51228681 None:intergenic
AGTCCAATTGCATCAGGTAC+TGG 0.453883 8_1:+51229840 None:intergenic
TAGTAATACTGTCCATCTAA+TGG 0.456212 8_1:+51226283 None:intergenic
GTTCTCCCTTGGCTGGTGCT+AGG 0.457232 8_1:+51225627 None:intergenic
AGGTGTCTGGATGGAATTCA+AGG 0.457810 8_1:-51228017 Msa1199260:CDS
CCTCGTATCCCCACAGTGTC+CGG 0.460971 8_1:+51227592 None:intergenic
GTCTATTCAGCTTCGTGTAT+CGG 0.462638 8_1:-51228466 Msa1199260:intron
AAGGTATGTCTCGCGATCGA+TGG 0.462733 8_1:+51229743 None:intergenic
GGCCTAATGGGAAGATTCCT+TGG 0.464882 8_1:-51226377 Msa1199260:CDS
TTGTATCTTGTATGGCATTG+AGG 0.464908 8_1:+51231211 None:intergenic
AAAAGAACGCCGTGCTATGA+AGG 0.465391 8_1:-51229030 Msa1199260:intron
TCATAGCATGGCCTGCAGAC+AGG 0.469133 8_1:+51231265 None:intergenic
TTCCTTTCATACTCATAGCA+TGG 0.470125 8_1:+51231253 None:intergenic
ATGTTGAGTGTGCGAGGGTA+GGG 0.470633 8_1:+51231688 None:intergenic
AGTGTGGCTTCCCTGTCTGC+AGG 0.470647 8_1:-51231276 Msa1199260:CDS
TACCTGATGCAATTGGACTT+TGG 0.472918 8_1:-51229836 Msa1199260:CDS
TGTATCTTGTATGGCATTGA+GGG 0.473793 8_1:+51231212 None:intergenic
CCCATTAGTCCTTTAAGGAA+AGG 0.477537 8_1:+51226119 None:intergenic
CATCTCTTTGCAATTGTACA+AGG 0.478702 8_1:-51226398 Msa1199260:CDS
AGGAAAGTAGCAATACCTTC+AGG 0.479655 8_1:-51229942 Msa1199260:CDS
CTACTGCCCATCTAAGAACT+TGG 0.479808 8_1:+51227239 None:intergenic
TTAAACTCGCCATCATCGTC+TGG 0.482309 8_1:+51226317 None:intergenic
AACCAAAGTCCAATTGCATC+AGG 0.483430 8_1:+51229834 None:intergenic
CATAGCATGGCCTGCAGACA+GGG 0.484200 8_1:+51231266 None:intergenic
TTTGTGTGATGTTGAAATGC+AGG 0.486310 8_1:+51228588 None:intergenic
ACCTTGACCGCCTTTCAGTC+AGG 0.487974 8_1:-51229725 Msa1199260:intron
CAGGATGAAAATGAAGAGGA+TGG 0.490027 8_1:-51227888 Msa1199260:CDS
AGGTATGTCTCGCGATCGAT+GGG 0.490485 8_1:+51229744 None:intergenic
AAATGGCTTTGATCCTCCTA+AGG 0.493222 8_1:-51227949 Msa1199260:CDS
TGTTTCTTGAAGTGCTTCAA+AGG 0.493651 8_1:+51229175 None:intergenic
TTCATACTCCAACCTTCTGA+TGG 0.494377 8_1:+51228744 None:intergenic
TACCAAGGAATCTTCCCATT+AGG 0.495635 8_1:+51226375 None:intergenic
TCTGTAGGGCGTACAGTAGA+AGG 0.497594 8_1:-51231322 Msa1199260:CDS
ATTGTAATGCAGGTTTGAGC+CGG 0.497856 8_1:-51229366 Msa1199260:intron
GTGTGTCTGTGGTTCTCCCT+TGG 0.498140 8_1:+51225616 None:intergenic
ACTCAAAGAAGAGTAATAGA+AGG 0.500130 8_1:+51229877 None:intergenic
TTCTCAGAGAAATACTTCTC+AGG 0.500963 8_1:+51229092 None:intergenic
TATGAGTATGAAAGGAAAGA+AGG 0.503548 8_1:-51231247 Msa1199260:CDS
TGTTAATATAGGCAATCCTT+TGG 0.504205 8_1:+51227143 None:intergenic
CTAGAAATGTAGACGAGAGA+TGG 0.505503 8_1:+51228621 None:intergenic
ATTCCACATTGCTTAACATC+AGG 0.508229 8_1:+51225987 None:intergenic
ATTCAAGGGCCTGTTTATGT+TGG 0.508747 8_1:-51228002 Msa1199260:CDS
ACAAGAATTTAAAATGGAAG+AGG 0.511842 8_1:-51230828 Msa1199260:CDS
TAAGTCATCACAACCTCACT+TGG 0.512655 8_1:+51225677 None:intergenic
ATGAATGGGGAGCATTGATT+GGG 0.513295 8_1:-51226181 Msa1199260:CDS
CTTCTCAGGTGCACGCGGCT+CGG 0.514931 8_1:+51229106 None:intergenic
TCAAGAAGTCCTGCTTAAAG+AGG 0.515226 8_1:-51227646 Msa1199260:CDS
CGCCACTGTCCAATATGGTA+TGG 0.517251 8_1:-51227193 Msa1199260:CDS
ATGGAGTGGAGTTAGTCTTG+AGG 0.520262 8_1:-51226468 Msa1199260:CDS
CAACAGGTTGGTATGAGCTA+TGG 0.520432 8_1:-51227388 Msa1199260:intron
AGGACTTCTTGAGTTGAAGA+AGG 0.520603 8_1:+51227657 None:intergenic
AATTCTTCACTGACAGAAGA+TGG 0.520844 8_1:-51227690 Msa1199260:CDS
CATGTTGAGTGTGCGAGGGT+AGG 0.523811 8_1:+51231687 None:intergenic
CATGAATGGCCTCTTTAAGC+AGG 0.528536 8_1:+51227637 None:intergenic
TGAGAGGCAATGCACTAAAA+GGG 0.528680 8_1:+51227110 None:intergenic
GAGTTAGTCTTGAGGAATGG+TGG 0.529431 8_1:-51226460 Msa1199260:CDS
TCATGTTACGTTTCTGATGA+CGG 0.530499 8_1:-51229212 Msa1199260:CDS
ACCTGACTGAAAGGCGGTCA+AGG 0.530876 8_1:+51229724 None:intergenic
TACTTGATCAGATTCCCAAA+TGG 0.531951 8_1:-51229770 Msa1199260:CDS
TACCAAGGCGTTCATTGCAC+CGG 0.533585 8_1:+51228563 None:intergenic
ATTCTTGAATTGAGATGGAG+TGG 0.534682 8_1:-51226482 Msa1199260:CDS
AGATGAAGATGAAGAAGATG+TGG 0.535004 8_1:-51230861 Msa1199260:CDS
AAAGATGAGACACCATGGCC+AGG 0.535047 8_1:-51228723 Msa1199260:CDS
TGAGATTTGATAGTCTTGAC+AGG 0.536074 8_1:-51228305 Msa1199260:CDS
AAACTAGACAGCCACTATCA+AGG 0.537495 8_1:-51229962 Msa1199260:CDS
GCTTCCATGTTGAGTGTGCG+AGG 0.538251 8_1:+51231682 None:intergenic
GCAGCCATTGCAATTAGATA+AGG 0.538570 8_1:-51227751 Msa1199260:CDS
GGCCATGCTATGAGTATGAA+AGG 0.544294 8_1:-51231255 Msa1199260:CDS
TAAAGATGCATACTCGTGGT+TGG 0.547631 8_1:-51227336 Msa1199260:CDS
ACAAGATACAAGCGTATCAA+AGG 0.549629 8_1:-51231199 Msa1199260:intron
ACTCAGTCCTTATAGAATGA+TGG 0.551671 8_1:-51229916 Msa1199260:CDS
TCTTTCTGTAAGATTGATTG+GGG 0.551988 8_1:+51227267 None:intergenic
TCAGTGAGCAAGCAGACAGC+CGG 0.552176 8_1:+51227070 None:intergenic
GTAGAGAATTGTTTACAGAA+AGG 0.552263 8_1:+51229128 None:intergenic
TGAGAGTTCCATCAGAAGGT+TGG 0.553628 8_1:-51228752 Msa1199260:CDS
GTTTGTTGTTTGACACGTGT+TGG 0.553632 8_1:-51225857 Msa1199260:three_prime_UTR
TTTGTAGCTTGTGAAGAGTG+TGG 0.555087 8_1:-51231292 Msa1199260:CDS
AGCCGGTGCAATGAACGCCT+TGG 0.555691 8_1:-51228565 Msa1199260:intron
AATATAGTCACTGTGGTTGG+AGG 0.557077 8_1:+51226257 None:intergenic
AAGTGCTTCAAAGGTGAGCA+TGG 0.557216 8_1:+51229184 None:intergenic
GATCAGGTTGTATATTCAGA+AGG 0.562306 8_1:-51227980 Msa1199260:CDS
ACTTAACCAAGTTCTTAGAT+GGG 0.564691 8_1:-51227245 Msa1199260:CDS
TGTATATCTGTGTGTGTCTG+TGG 0.564985 8_1:+51225605 None:intergenic
GAGATATGTGGTGATTCTGT+AGG 0.565126 8_1:-51231337 Msa1199260:CDS
TCCTTATAGAATGATGGTTG+TGG 0.565499 8_1:-51229910 Msa1199260:CDS
CTACCCTCGCACACTCAACA+TGG 0.565948 8_1:-51231686 Msa1199260:exon
TCTCAATTCAAGAATAGAAG+AGG 0.566349 8_1:+51226490 None:intergenic
AGCTTCAGGACCTGACTGAA+AGG 0.568052 8_1:+51229715 None:intergenic
TGACGCGGTTGATCCAGAAA+AGG 0.568923 8_1:-51230509 Msa1199260:CDS
AACAACCGCAGATCCAATCA+AGG 0.570577 8_1:-51229303 Msa1199260:CDS
ATGAGTATGAAAGGAAAGAA+GGG 0.570844 8_1:-51231246 Msa1199260:CDS
CAAGTTCTTAGATGGGCAGT+AGG 0.571891 8_1:-51227238 Msa1199260:CDS
ATCAACTTGAGGTGTCTGGA+TGG 0.574542 8_1:-51228026 Msa1199260:CDS
TGAGTTGTAGCTACGAAGAC+CGG 0.574954 8_1:-51227611 Msa1199260:CDS
GTATCCTTATCTAATTGCAA+TGG 0.575951 8_1:+51227747 None:intergenic
CACAATGGAGGAGACAATGA+AGG 0.576558 8_1:-51228654 Msa1199260:CDS
TTTCAACATCACACAAAAGC+CGG 0.578563 8_1:-51228582 Msa1199260:CDS
ACTGAACCTAGCACCAGCCA+AGG 0.579388 8_1:-51225633 Msa1199260:three_prime_UTR
GCTACAACTCATGACATGAA+TGG 0.580836 8_1:+51227623 None:intergenic
GCATACTCGTGGTTGGAGAT+CGG 0.580977 8_1:-51227329 Msa1199260:CDS
AAAGGAAGTCCAAGAGTGGA+GGG 0.583683 8_1:-51230884 Msa1199260:intron
CAAATACTTCTTGGTCACAA+TGG 0.585710 8_1:-51228669 Msa1199260:CDS
TCTTTATGGACATTCAACTT+GGG 0.586661 8_1:-51228356 Msa1199260:CDS
AAATCTGGCTTGCATTGTCA+TGG 0.586979 8_1:-51229794 Msa1199260:CDS
CTACGAAGACCGGACACTGT+GGG 0.588537 8_1:-51227601 Msa1199260:CDS
ACATTTCAACATTGTATCGA+AGG 0.591248 8_1:-51226342 Msa1199260:CDS
TTGAATATAGTCACTGTGGT+TGG 0.591335 8_1:+51226254 None:intergenic
AGATATGTGGTGATTCTGTA+GGG 0.598951 8_1:-51231336 Msa1199260:CDS
TCTTAACAGCAATGAACTTG+TGG 0.601654 8_1:-51231635 Msa1199260:CDS
CTTCCATGTTGAGTGTGCGA+GGG 0.602672 8_1:+51231683 None:intergenic
AGGATGAAAATGAAGAGGAT+GGG 0.604235 8_1:-51227887 Msa1199260:CDS
TGGTGCAAAATTAGATAACA+AGG 0.605199 8_1:-51230578 Msa1199260:CDS
TGGTTCCTTGATTGGATCTG+CGG 0.606117 8_1:+51229298 None:intergenic
AAAACAGGATGAAAATGAAG+AGG 0.608147 8_1:-51227892 Msa1199260:CDS
GACCAAATGACAACAAGAGT+TGG 0.608552 8_1:+51226080 None:intergenic
ACAAGGAGAAAACAGATGAG+TGG 0.612725 8_1:-51230561 Msa1199260:CDS
AAAAGGAAGTCCAAGAGTGG+AGG 0.616197 8_1:-51230885 Msa1199260:intron
TTGGTGCTTCATAGCATGCA+AGG 0.619337 8_1:-51225777 Msa1199260:three_prime_UTR
GGTGAGAATAAATGCGCTTG+TGG 0.620185 8_1:-51228784 Msa1199260:CDS
ACCGTATTTGCTGTAACAAG+AGG 0.620555 8_1:+51229275 None:intergenic
GTATTTGCTGTAACAAGAGG+TGG 0.623765 8_1:+51229278 None:intergenic
TCTATGAGAGTTCCATCAGA+AGG 0.624008 8_1:-51228756 Msa1199260:CDS
GAAGACTCAAGCTTCTCCAA+AGG 0.624275 8_1:-51227159 Msa1199260:CDS
ATAGAATGATGGTTGTGGCA+AGG 0.625809 8_1:-51229905 Msa1199260:CDS
GGTCAAAATTGTGAGATATG+TGG 0.625986 8_1:-51231349 Msa1199260:CDS
AAATACTTCTCAGGTGCACG+CGG 0.630778 8_1:+51229101 None:intergenic
TGCAAAAGGAAGTCCAAGAG+TGG 0.631002 8_1:-51230888 Msa1199260:intron
ACGATACAATATATTATGAG+AGG 0.631677 8_1:+51227094 None:intergenic
TGATAAATTCATCACACCAT+CGG 0.631900 8_1:-51227050 Msa1199260:intron
TGATACTAACCTTCATAGCA+CGG 0.635282 8_1:+51229021 None:intergenic
CCAATACTGTGAGAATATAG+GGG 0.640932 8_1:+51230734 None:intergenic
GTGGAGTTAGTCTTGAGGAA+TGG 0.641187 8_1:-51226463 Msa1199260:CDS
ATACTTCTTGGTCACAATGG+AGG 0.641421 8_1:-51228666 Msa1199260:CDS
TTCACAGATGCTATAAATAG+CGG 0.641791 8_1:-51226209 Msa1199260:CDS
ACAGATGAGTGGAAGCAGCA+AGG 0.643251 8_1:-51230550 Msa1199260:CDS
GAGTGTGCGAGGGTAGGGAA+TGG 0.643784 8_1:+51231693 None:intergenic
GGGCCTGATGTTAAGCAATG+TGG 0.646332 8_1:-51225990 Msa1199260:CDS
GGTGTCTGGATGGAATTCAA+GGG 0.646774 8_1:-51228016 Msa1199260:CDS
GTCAATTCTTACCCAAACCA+AGG 0.652742 8_1:+51226034 None:intergenic
CTCAACATGGAAGCTAAGAG+TGG 0.655022 8_1:-51231673 Msa1199260:exon
TTCAGGACCTGACTGAAAGG+CGG 0.662584 8_1:+51229718 None:intergenic
TAAGGACTGAGTCTTCCTGA+AGG 0.664582 8_1:+51229927 None:intergenic
AATGTGCATTAAATCTACCA+AGG 0.668204 8_1:+51226360 None:intergenic
TGGTGCTTCATAGCATGCAA+GGG 0.671390 8_1:-51225776 Msa1199260:three_prime_UTR
TACGAAGACCGGACACTGTG+GGG 0.671944 8_1:-51227600 Msa1199260:CDS
TCAAGACTATCAAATCTCAG+TGG 0.677780 8_1:+51228309 None:intergenic
AGTTTAAAGATGCATACTCG+TGG 0.684752 8_1:-51227340 Msa1199260:CDS
CTGAACCTAGCACCAGCCAA+GGG 0.688851 8_1:-51225632 Msa1199260:three_prime_UTR
GCTACGAAGACCGGACACTG+TGG 0.695611 8_1:-51227602 Msa1199260:CDS
AACCATACCATATTGGACAG+TGG 0.697144 8_1:+51227191 None:intergenic
AATGTCCATAAAGAAACACA+TGG 0.711721 8_1:+51228365 None:intergenic
CATACCATATTGGACAGTGG+CGG 0.714328 8_1:+51227194 None:intergenic
TCTTCACTGACAGAAGATGG+TGG 0.726467 8_1:-51227687 Msa1199260:CDS
AATAGCGGTGAACATGAATG+GGG 0.729849 8_1:-51226194 Msa1199260:CDS
GTATGAAAGATGAGACACCA+TGG 0.730748 8_1:-51228728 Msa1199260:CDS
AATGTTGAATATAGTCACTG+TGG 0.751089 8_1:+51226250 None:intergenic
TCTGTTGATTGAAACTGACG+CGG 0.807141 8_1:-51230524 Msa1199260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATATTTTATTTATTTTT+TGG - chr8_1:51225885-51225904 Msa1199260:three_prime_UTR 0.0%
!!! TTCTTTAAGTTATAATATAA+AGG + chr8_1:51227187-51227206 None:intergenic 10.0%
!! CTACATATAAAAATAACAAA+GGG + chr8_1:51225794-51225813 None:intergenic 15.0%
!! GAAATAACAATAAAAAAGAA+AGG + chr8_1:51226406-51226425 None:intergenic 15.0%
!! TATTGAACAAGAATTTAAAA+TGG - chr8_1:51226486-51226505 Msa1199260:CDS 15.0%
!! TTCAGCTTAATTAAATTTAT+AGG + chr8_1:51226634-51226653 None:intergenic 15.0%
!!! AAATAAAATAGTGTTTTTGT+TGG + chr8_1:51229054-51229073 None:intergenic 15.0%
!! AATTGTTATATACATGAAAA+GGG + chr8_1:51229514-51229533 None:intergenic 15.0%
!! TAATTGTTATATACATGAAA+AGG + chr8_1:51229515-51229534 None:intergenic 15.0%
!! TGTATTCATAACAATTTATA+TGG + chr8_1:51229902-51229921 None:intergenic 15.0%
!! GGATAAAATATAATCAAATT+GGG + chr8_1:51230610-51230629 None:intergenic 15.0%
!! GCTACATATAAAAATAACAA+AGG + chr8_1:51225795-51225814 None:intergenic 20.0%
!!! ATTTTTATATGTAGCATGTT+AGG - chr8_1:51225800-51225819 Msa1199260:three_prime_UTR 20.0%
!! AATATAAATACCATCTATGT+AGG - chr8_1:51226205-51226224 Msa1199260:CDS 20.0%
!!! ATGATGATGATACAAAATAT+AGG - chr8_1:51226557-51226576 Msa1199260:intron 20.0%
!!! TGATGATGATACAAAATATA+GGG - chr8_1:51226558-51226577 Msa1199260:intron 20.0%
!! ATTATTAATATAAGCTCTTC+AGG - chr8_1:51227118-51227137 Msa1199260:CDS 20.0%
!! TTATTAATATAAGCTCTTCA+GGG - chr8_1:51227119-51227138 Msa1199260:CDS 20.0%
!! TGAAATTATGAATTACATCA+AGG - chr8_1:51227784-51227803 Msa1199260:intron 20.0%
!! GTTGTTATAAAGATATCTAT+TGG + chr8_1:51228003-51228022 None:intergenic 20.0%
!!! ATGTTATTTGAACATCAATT+TGG - chr8_1:51228344-51228363 Msa1199260:CDS 20.0%
!!! TGTTATTTGAACATCAATTT+GGG - chr8_1:51228345-51228364 Msa1199260:CDS 20.0%
!!! GAATTTGACAACTTTTTAAA+TGG + chr8_1:51228393-51228412 None:intergenic 20.0%
!!! ACAGTTATTTGAAATCAATT+TGG + chr8_1:51228423-51228442 None:intergenic 20.0%
!! AATTGAAATGTAAATTACCA+AGG + chr8_1:51228775-51228794 None:intergenic 20.0%
!! AAGGATACTGAAAATAAATT+TGG - chr8_1:51229588-51229607 Msa1199260:intron 20.0%
!! AGTTTAAATATACACCTAAA+AGG + chr8_1:51229873-51229892 None:intergenic 20.0%
!! TAAAAATTATACATGCATGA+TGG - chr8_1:51230336-51230355 Msa1199260:intron 20.0%
!! TGAAAGTTAATATAACAAAG+TGG - chr8_1:51230397-51230416 Msa1199260:intron 20.0%
!! GGGATAAAATATAATCAAAT+TGG + chr8_1:51230611-51230630 None:intergenic 20.0%
!!! ATAAGCTATTTCTATAACAA+GGG + chr8_1:51230631-51230650 None:intergenic 20.0%
!! AGTTAACAATAAGAGATTAA+GGG + chr8_1:51230715-51230734 None:intergenic 20.0%
!! TAGTTAACAATAAGAGATTA+AGG + chr8_1:51230716-51230735 None:intergenic 20.0%
!! TTTGTAAACACAATGAATAA+TGG + chr8_1:51230745-51230764 None:intergenic 20.0%
!! GTTTACAAATAATATTGTTC+AGG - chr8_1:51230756-51230775 Msa1199260:CDS 20.0%
!!! ATTTCACAAAACTTTTCTTT+TGG + chr8_1:51231401-51231420 None:intergenic 20.0%
!!! ACTTGTGATTTTTCATTTTT+TGG - chr8_1:51231618-51231637 Msa1199260:CDS 20.0%
! GGTCTAAATTAATTTCTGTA+TGG + chr8_1:51225736-51225755 None:intergenic 25.0%
! TAACAAAGGGCTTATAAAAA+CGG + chr8_1:51225781-51225800 None:intergenic 25.0%
!! ACAAGAATTTAAAATGGAAG+AGG - chr8_1:51226492-51226511 Msa1199260:CDS 25.0%
! TCAATTAACTCAATGAAAAC+AGG - chr8_1:51226670-51226689 Msa1199260:intron 25.0%
! ATGTCATACATCATGAAATT+AGG - chr8_1:51226844-51226863 Msa1199260:intron 25.0%
! AACTTTCACAACTATTGTTT+CGG - chr8_1:51227859-51227878 Msa1199260:intron 25.0%
!! AAATACGGTTCTTTCAATTT+TGG - chr8_1:51228059-51228078 Msa1199260:intron 25.0%
!!! TAACATGAAATTTTGTTTGC+AGG + chr8_1:51228096-51228115 None:intergenic 25.0%
!!! AGAAGTATTTGTATCATACT+TGG + chr8_1:51228642-51228661 None:intergenic 25.0%
! AGTATGATACAAATACTTCT+TGG - chr8_1:51228642-51228661 Msa1199260:CDS 25.0%
! CATTCACACAAATACAATTA+AGG + chr8_1:51229228-51229247 None:intergenic 25.0%
! CTTAATTGTATTTGTGTGAA+TGG - chr8_1:51229226-51229245 Msa1199260:CDS 25.0%
! AATTTCAACAACACTTTGAA+TGG - chr8_1:51229798-51229817 Msa1199260:CDS 25.0%
!!! TCTTTAAAACCATACCATAT+TGG + chr8_1:51230139-51230158 None:intergenic 25.0%
!!! ATATGGTATGGTTTTAAAGA+AGG - chr8_1:51230139-51230158 Msa1199260:intron 25.0%
! ACGATACAATATATTATGAG+AGG + chr8_1:51230229-51230248 None:intergenic 25.0%
! CATAATATATTGTATCGTTC+CGG - chr8_1:51230231-51230250 Msa1199260:intron 25.0%
! GTGACAATGTATAAAATAGA+AGG + chr8_1:51230306-51230325 None:intergenic 25.0%
! AATATAACAAAGTGGTATCA+TGG - chr8_1:51230405-51230424 Msa1199260:intron 25.0%
!!! CATAAGCTATTTCTATAACA+AGG + chr8_1:51230632-51230651 None:intergenic 25.0%
! ACAAATAATATTGTTCAGGT+AGG - chr8_1:51230760-51230779 Msa1199260:CDS 25.0%
! GTGACTATATTCAACATTAT+TGG - chr8_1:51231075-51231094 Msa1199260:intron 25.0%
!! GAAATTGTTCTTTTCTTCAT+GGG - chr8_1:51231161-51231180 Msa1199260:intron 25.0%
!!! GGTTTACCTCATTTTGTTTT+TGG + chr8_1:51225715-51225734 None:intergenic 30.0%
! TGCAGGTAATAATTAACTTG+TGG + chr8_1:51225757-51225776 None:intergenic 30.0%
!! ATTTTTGTTTATGCAGCCTA+AGG - chr8_1:51225931-51225950 Msa1199260:three_prime_UTR 30.0%
TATGAGTATGAAAGGAAAGA+AGG - chr8_1:51226073-51226092 Msa1199260:CDS 30.0%
ATGAGTATGAAAGGAAAGAA+GGG - chr8_1:51226074-51226093 Msa1199260:CDS 30.0%
ATTACTGTATGTATCAGTGT+TGG + chr8_1:51226243-51226262 None:intergenic 30.0%
ACATACAGTAATAACACATG+TGG - chr8_1:51226251-51226270 Msa1199260:CDS 30.0%
!! GTTATTTCTTGTCATGCAAA+AGG - chr8_1:51226418-51226437 Msa1199260:CDS 30.0%
TCCAATACTGTGAGAATATA+GGG + chr8_1:51226590-51226609 None:intergenic 30.0%
TGGTGCAAAATTAGATAACA+AGG - chr8_1:51226742-51226761 Msa1199260:intron 30.0%
TGATGTATGACATACATACA+TGG + chr8_1:51226837-51226856 None:intergenic 30.0%
!!! TTTTCTAGAGTAAAAGACAC+AGG + chr8_1:51226906-51226925 None:intergenic 30.0%
ACTCAAAGAAGAGTAATAGA+AGG + chr8_1:51227446-51227465 None:intergenic 30.0%
TATCAGTATCATGTGAAATC+TGG - chr8_1:51227511-51227530 Msa1199260:intron 30.0%
ATGAGAGTAAAATAAGCTTC+AGG + chr8_1:51227622-51227641 None:intergenic 30.0%
TCTATCACACATAGTAATAG+AGG + chr8_1:51227722-51227741 None:intergenic 30.0%
!! ATTTACTTTTCACTTATCCG+TGG + chr8_1:51227747-51227766 None:intergenic 30.0%
! ATTACATCAAGGAGTACATA+AGG - chr8_1:51227795-51227814 Msa1199260:intron 30.0%
ATAAGGCTTGTATAGTCAAT+TGG - chr8_1:51227812-51227831 Msa1199260:intron 30.0%
! TCTATTGGAGAAAGCATATT+AGG + chr8_1:51227988-51228007 None:intergenic 30.0%
GTAGAGAATTGTTTACAGAA+AGG + chr8_1:51228195-51228214 None:intergenic 30.0%
TGAGAAGATAGACTTTCTTA+AGG - chr8_1:51228245-51228264 Msa1199260:intron 30.0%
TCTCTCTGTTAGAAAAGTAA+GGG + chr8_1:51228501-51228520 None:intergenic 30.0%
TTCTCTCTGTTAGAAAAGTA+AGG + chr8_1:51228502-51228521 None:intergenic 30.0%
GAGAGAATATGAAGAGTTTA+AGG - chr8_1:51228515-51228534 Msa1199260:intron 30.0%
AATGTCCATAAAGAAACACA+TGG + chr8_1:51228958-51228977 None:intergenic 30.0%
TTCTTTATGGACATTCAACT+TGG - chr8_1:51228963-51228982 Msa1199260:intron 30.0%
TCTTTATGGACATTCAACTT+GGG - chr8_1:51228964-51228983 Msa1199260:intron 30.0%
TGACACTGAAATCTAAAAAC+TGG + chr8_1:51229160-51229179 None:intergenic 30.0%
! TTCAGTGTCATTATTGTGTA+TGG - chr8_1:51229170-51229189 Msa1199260:CDS 30.0%
GCGGAAAAACAAAATAGAAA+GGG + chr8_1:51229272-51229291 None:intergenic 30.0%
TGCGGAAAAACAAAATAGAA+AGG + chr8_1:51229273-51229292 None:intergenic 30.0%
!! TTCAGAAGGAAAGCTTTAAA+TGG - chr8_1:51229354-51229373 Msa1199260:CDS 30.0%
AAAACAGGATGAAAATGAAG+AGG - chr8_1:51229428-51229447 Msa1199260:intron 30.0%
GTATCCTTATCTAATTGCAA+TGG + chr8_1:51229576-51229595 None:intergenic 30.0%
!!! AATACACTTTTTCCATCAAC+AGG - chr8_1:51229916-51229935 Msa1199260:CDS 30.0%
TCTTTCTGTAAGATTGATTG+GGG + chr8_1:51230056-51230075 None:intergenic 30.0%
GTCTTTCTGTAAGATTGATT+GGG + chr8_1:51230057-51230076 None:intergenic 30.0%
AGTCTTTCTGTAAGATTGAT+TGG + chr8_1:51230058-51230077 None:intergenic 30.0%
ACTTAACCAAGTTCTTAGAT+GGG - chr8_1:51230075-51230094 Msa1199260:intron 30.0%
TGTTAATATAGGCAATCCTT+TGG + chr8_1:51230180-51230199 None:intergenic 30.0%
TGATAAATTCATCACACCAT+CGG - chr8_1:51230270-51230289 Msa1199260:intron 30.0%
TAAGAGATTAAGGGACTATT+TGG + chr8_1:51230706-51230725 None:intergenic 30.0%
TCTCAATTCAAGAATAGAAG+AGG + chr8_1:51230833-51230852 None:intergenic 30.0%
CTTCTATTCTTGAATTGAGA+TGG - chr8_1:51230833-51230852 Msa1199260:CDS 30.0%
! GTGGAGAAATCAACAATTTT+GGG - chr8_1:51230879-51230898 Msa1199260:CDS 30.0%
!! AATCAACAATTTTGGGTCAT+TGG - chr8_1:51230886-51230905 Msa1199260:intron 30.0%
AATGTGCATTAAATCTACCA+AGG + chr8_1:51230963-51230982 None:intergenic 30.0%
ACATTTCAACATTGTATCGA+AGG - chr8_1:51230978-51230997 Msa1199260:intron 30.0%
TAGTAATACTGTCCATCTAA+TGG + chr8_1:51231040-51231059 None:intergenic 30.0%
AATGTTGAATATAGTCACTG+TGG + chr8_1:51231073-51231092 None:intergenic 30.0%
AACATTATTGGTATTGTTGC+TGG - chr8_1:51231087-51231106 Msa1199260:intron 30.0%
TTCACAGATGCTATAAATAG+CGG - chr8_1:51231111-51231130 Msa1199260:intron 30.0%
! GGAAATTGTTCTTTTCTTCA+TGG - chr8_1:51231160-51231179 Msa1199260:intron 30.0%
CATCTTTATCCTTTCCTTAA+AGG - chr8_1:51231192-51231211 Msa1199260:intron 30.0%
! TTCTATCTTTTCCTTGGTTT+GGG - chr8_1:51231275-51231294 Msa1199260:CDS 30.0%
!! CCTTAGTTTTCAACACAAAA+GGG + chr8_1:51231311-51231330 None:intergenic 30.0%
! CCTTTTGTGTTGAAAACTAA+GGG - chr8_1:51231309-51231328 Msa1199260:CDS 30.0%
! CTTTTGTGTTGAAAACTAAG+GGG - chr8_1:51231310-51231329 Msa1199260:CDS 30.0%
TCTTAACAGCAATGAACTTG+TGG - chr8_1:51225685-51225704 Msa1199260:three_prime_UTR 35.0%
GGTCATCCAAAAACAAAATG+AGG - chr8_1:51225706-51225725 Msa1199260:three_prime_UTR 35.0%
GGTCAAAATTGTGAGATATG+TGG - chr8_1:51225971-51225990 Msa1199260:exon 35.0%
AGATATGTGGTGATTCTGTA+GGG - chr8_1:51225984-51226003 Msa1199260:CDS 35.0%
TTCCTTTCATACTCATAGCA+TGG + chr8_1:51226070-51226089 None:intergenic 35.0%
! TGTATCTTGTATGGCATTGA+GGG + chr8_1:51226111-51226130 None:intergenic 35.0%
TTGTATCTTGTATGGCATTG+AGG + chr8_1:51226112-51226131 None:intergenic 35.0%
TGATACGCTTGTATCTTGTA+TGG + chr8_1:51226120-51226139 None:intergenic 35.0%
ACAAGATACAAGCGTATCAA+AGG - chr8_1:51226121-51226140 Msa1199260:CDS 35.0%
AGATGAAGATGAAGAAGATG+TGG - chr8_1:51226459-51226478 Msa1199260:CDS 35.0%
CCAATACTGTGAGAATATAG+GGG + chr8_1:51226589-51226608 None:intergenic 35.0%
CTCCAATACTGTGAGAATAT+AGG + chr8_1:51226591-51226610 None:intergenic 35.0%
TAAGCACTTGTGAGACTATT+TGG - chr8_1:51227048-51227067 Msa1199260:intron 35.0%
GAGGTTATAAAAGCAGCTTA+TGG - chr8_1:51227073-51227092 Msa1199260:CDS 35.0%
!! ATTGCTACTTTCCTTGATAG+TGG + chr8_1:51227372-51227391 None:intergenic 35.0%
ACTCAGTCCTTATAGAATGA+TGG - chr8_1:51227404-51227423 Msa1199260:intron 35.0%
TCCTTATAGAATGATGGTTG+TGG - chr8_1:51227410-51227429 Msa1199260:intron 35.0%
TACTTGATCAGATTCCCAAA+TGG - chr8_1:51227550-51227569 Msa1199260:intron 35.0%
!! AATTGGCTCGTATAACTAAC+TGG - chr8_1:51227829-51227848 Msa1199260:intron 35.0%
TTTCACAACTATTGTTTCGG+AGG - chr8_1:51227862-51227881 Msa1199260:intron 35.0%
TTCACAACTATTGTTTCGGA+GGG - chr8_1:51227863-51227882 Msa1199260:intron 35.0%
AAGTTTGACATCGTAACCTT+AGG + chr8_1:51227904-51227923 None:intergenic 35.0%
!! AGCATATTAGGCTTGTTTTC+CGG + chr8_1:51227976-51227995 None:intergenic 35.0%
ACCTCTTGTTACAGCAAATA+CGG - chr8_1:51228044-51228063 Msa1199260:intron 35.0%
TCATGTTACGTTTCTGATGA+CGG - chr8_1:51228108-51228127 Msa1199260:intron 35.0%
! TGTTTCTTGAAGTGCTTCAA+AGG + chr8_1:51228148-51228167 None:intergenic 35.0%
AGCTGAATTTGCGCAAAAAT+GGG - chr8_1:51228167-51228186 Msa1199260:intron 35.0%
TTCTCAGAGAAATACTTCTC+AGG + chr8_1:51228231-51228250 None:intergenic 35.0%
TGATACTAACCTTCATAGCA+CGG + chr8_1:51228302-51228321 None:intergenic 35.0%
CTCTCTGTTAGAAAAGTAAG+GGG + chr8_1:51228500-51228519 None:intergenic 35.0%
!!! TGATCTTTTGTGTTGTTTCC+TGG + chr8_1:51228618-51228637 None:intergenic 35.0%
CAAATACTTCTTGGTCACAA+TGG - chr8_1:51228651-51228670 Msa1199260:CDS 35.0%
TTTGTGTGATGTTGAAATGC+AGG + chr8_1:51228735-51228754 None:intergenic 35.0%
TTTCAACATCACACAAAAGC+CGG - chr8_1:51228738-51228757 Msa1199260:CDS 35.0%
AGAAGCCATGTGTTTCTTTA+TGG - chr8_1:51228950-51228969 Msa1199260:intron 35.0%
TCAAGACTATCAAATCTCAG+TGG + chr8_1:51229014-51229033 None:intergenic 35.0%
! TGAGATTTGATAGTCTTGAC+AGG - chr8_1:51229015-51229034 Msa1199260:intron 35.0%
GTGGCAAATGATTTAAACTG+TGG + chr8_1:51229087-51229106 None:intergenic 35.0%
! GATCAGGTTGTATATTCAGA+AGG - chr8_1:51229340-51229359 Msa1199260:CDS 35.0%
TGTACAAGTTCACTCAAAAC+AGG - chr8_1:51229413-51229432 Msa1199260:intron 35.0%
AGGATGAAAATGAAGAGGAT+GGG - chr8_1:51229433-51229452 Msa1199260:intron 35.0%
AATTCTTCACTGACAGAAGA+TGG - chr8_1:51229630-51229649 Msa1199260:intron 35.0%
! TACGTGTCTTAAGACCTTTT+AGG - chr8_1:51229856-51229875 Msa1199260:CDS 35.0%
AGTTTAAAGATGCATACTCG+TGG - chr8_1:51229980-51229999 Msa1199260:intron 35.0%
GACTTAACCAAGTTCTTAGA+TGG - chr8_1:51230074-51230093 Msa1199260:intron 35.0%
! GTAGACAGTGCTGTTAATAT+AGG + chr8_1:51230191-51230210 None:intergenic 35.0%
AGAAGGAAATTGATTACCGA+TGG + chr8_1:51230289-51230308 None:intergenic 35.0%
!! CATGCATGATGGATTCAATA+AGG - chr8_1:51230347-51230366 Msa1199260:intron 35.0%
ATTCTTGAATTGAGATGGAG+TGG - chr8_1:51230838-51230857 Msa1199260:CDS 35.0%
! GGTGGAGAAATCAACAATTT+TGG - chr8_1:51230878-51230897 Msa1199260:CDS 35.0%
CATCTCTTTGCAATTGTACA+AGG - chr8_1:51230922-51230941 Msa1199260:intron 35.0%
TTGAATATAGTCACTGTGGT+TGG + chr8_1:51231069-51231088 None:intergenic 35.0%
TAAATAGCGGTGAACATGAA+TGG - chr8_1:51231124-51231143 Msa1199260:intron 35.0%
AAATAGCGGTGAACATGAAT+GGG - chr8_1:51231125-51231144 Msa1199260:intron 35.0%
TCCTTTCCTTAAAGGACTAA+TGG - chr8_1:51231200-51231219 Msa1199260:CDS 35.0%
CCTTTCCTTAAAGGACTAAT+GGG - chr8_1:51231201-51231220 Msa1199260:CDS 35.0%
!! TTTGGCTTCTATCTTTTCCT+TGG - chr8_1:51231269-51231288 Msa1199260:CDS 35.0%
! CTTCTATCTTTTCCTTGGTT+TGG - chr8_1:51231274-51231293 Msa1199260:CDS 35.0%
! CCCTTTTGTGTTGAAAACTA+AGG - chr8_1:51231308-51231327 Msa1199260:CDS 35.0%
!! CCCTTAGTTTTCAACACAAA+AGG + chr8_1:51231312-51231331 None:intergenic 35.0%
ATTCCACATTGCTTAACATC+AGG + chr8_1:51231336-51231355 None:intergenic 35.0%
TTGGCTCACATCATTCATTT+GGG + chr8_1:51231382-51231401 None:intergenic 35.0%
! TTTGGCTCACATCATTCATT+TGG + chr8_1:51231383-51231402 None:intergenic 35.0%
! CTAAGAGTGGTCTTTTTGCA+GGG - chr8_1:51225660-51225679 Msa1199260:three_prime_UTR 40.0%
! TCCAAGTTTTTCACTGCCTT+AGG + chr8_1:51225950-51225969 None:intergenic 40.0%
AAGGCAGTGAAAAACTTGGA+TGG - chr8_1:51225950-51225969 Msa1199260:three_prime_UTR 40.0%
GAGATATGTGGTGATTCTGT+AGG - chr8_1:51225983-51226002 Msa1199260:CDS 40.0%
! TTTGTAGCTTGTGAAGAGTG+TGG - chr8_1:51226028-51226047 Msa1199260:CDS 40.0%
ACCATCTATGTAGGATCGAT+AGG - chr8_1:51226214-51226233 Msa1199260:CDS 40.0%
ACCTATCGATCCTACATAGA+TGG + chr8_1:51226218-51226237 None:intergenic 40.0%
CCCCTATATTCTCACAGTAT+TGG - chr8_1:51226586-51226605 Msa1199260:intron 40.0%
GTTGATCTTCATGAAGCAGA+TGG - chr8_1:51226722-51226741 Msa1199260:intron 40.0%
ACAAGGAGAAAACAGATGAG+TGG - chr8_1:51226759-51226778 Msa1199260:intron 40.0%
! TCTGTTGATTGAAACTGACG+CGG - chr8_1:51226796-51226815 Msa1199260:intron 40.0%
! CATACATACATGGCCTTTTC+TGG + chr8_1:51226827-51226846 None:intergenic 40.0%
CTTGTGAGACTATTTGGTAG+AGG - chr8_1:51227054-51227073 Msa1199260:CDS 40.0%
CTGTGTAACATGATGAATGC+AGG - chr8_1:51227328-51227347 Msa1199260:CDS 40.0%
AAACTAGACAGCCACTATCA+AGG - chr8_1:51227358-51227377 Msa1199260:CDS 40.0%
AGGAAAGTAGCAATACCTTC+AGG - chr8_1:51227378-51227397 Msa1199260:CDS 40.0%
GCCACAACCATCATTCTATA+AGG + chr8_1:51227414-51227433 None:intergenic 40.0%
ATAGAATGATGGTTGTGGCA+AGG - chr8_1:51227415-51227434 Msa1199260:intron 40.0%
TACCTGATGCAATTGGACTT+TGG - chr8_1:51227484-51227503 Msa1199260:intron 40.0%
AACCAAAGTCCAATTGCATC+AGG + chr8_1:51227489-51227508 None:intergenic 40.0%
! AAATCTGGCTTGCATTGTCA+TGG - chr8_1:51227526-51227545 Msa1199260:intron 40.0%
ACTATGTGTGATAGAAGCCA+CGG - chr8_1:51227727-51227746 Msa1199260:CDS 40.0%
TCACAACTATTGTTTCGGAG+GGG - chr8_1:51227864-51227883 Msa1199260:intron 40.0%
GCATTACAATTAAGTCCAGC+TGG + chr8_1:51227944-51227963 None:intergenic 40.0%
GCTGGACTTAATTGTAATGC+AGG - chr8_1:51227944-51227963 Msa1199260:CDS 40.0%
ATTGTAATGCAGGTTTGAGC+CGG - chr8_1:51227954-51227973 Msa1199260:CDS 40.0%
!! GTATTTGCTGTAACAAGAGG+TGG + chr8_1:51228045-51228064 None:intergenic 40.0%
!! ACCGTATTTGCTGTAACAAG+AGG + chr8_1:51228048-51228067 None:intergenic 40.0%
CAGCTGAATTTGCGCAAAAA+TGG - chr8_1:51228166-51228185 Msa1199260:intron 40.0%
TCTATGAGAGTTCCATCAGA+AGG - chr8_1:51228564-51228583 Msa1199260:intron 40.0%
TTCATACTCCAACCTTCTGA+TGG + chr8_1:51228579-51228598 None:intergenic 40.0%
GTATGAAAGATGAGACACCA+TGG - chr8_1:51228592-51228611 Msa1199260:CDS 40.0%
ATACTTCTTGGTCACAATGG+AGG - chr8_1:51228654-51228673 Msa1199260:CDS 40.0%
CTAGAAATGTAGACGAGAGA+TGG + chr8_1:51228702-51228721 None:intergenic 40.0%
GTCTATTCAGCTTCGTGTAT+CGG - chr8_1:51228854-51228873 Msa1199260:intron 40.0%
ATGTAACCACATAACACGTC+AGG + chr8_1:51229109-51229128 None:intergenic 40.0%
CTGGCAACAGTTTAAGCAAA+TGG + chr8_1:51229141-51229160 None:intergenic 40.0%
! TTTTTCCGCAGATCAACTTG+AGG - chr8_1:51229283-51229302 Msa1199260:CDS 40.0%
ATTCAAGGGCCTGTTTATGT+TGG - chr8_1:51229318-51229337 Msa1199260:CDS 40.0%
CAACCTGATCCAACATAAAC+AGG + chr8_1:51229330-51229349 None:intergenic 40.0%
!! AAATGGCTTTGATCCTCCTA+AGG - chr8_1:51229371-51229390 Msa1199260:intron 40.0%
CAGGATGAAAATGAAGAGGA+TGG - chr8_1:51229432-51229451 Msa1199260:intron 40.0%
GCAGCCATTGCAATTAGATA+AGG - chr8_1:51229569-51229588 Msa1199260:intron 40.0%
!! AGGACTTCTTGAGTTGAAGA+AGG + chr8_1:51229666-51229685 None:intergenic 40.0%
TCAAGAAGTCCTGCTTAAAG+AGG - chr8_1:51229674-51229693 Msa1199260:intron 40.0%
GCTACAACTCATGACATGAA+TGG + chr8_1:51229700-51229719 None:intergenic 40.0%
!!! CACTTTTTCCATCAACAGGT+TGG - chr8_1:51229920-51229939 Msa1199260:CDS 40.0%
TAAAGATGCATACTCGTGGT+TGG - chr8_1:51229984-51230003 Msa1199260:intron 40.0%
AACCATACCATATTGGACAG+TGG + chr8_1:51230132-51230151 None:intergenic 40.0%
TGAGAGGCAATGCACTAAAA+GGG + chr8_1:51230213-51230232 None:intergenic 40.0%
ATGAGAGGCAATGCACTAAA+AGG + chr8_1:51230214-51230233 None:intergenic 40.0%
ACTACTCATAAGTACTTGCG+AGG - chr8_1:51230471-51230490 Msa1199260:intron 40.0%
TAAGTACTTGCGAGGTTGTT+TGG - chr8_1:51230479-51230498 Msa1199260:intron 40.0%
TGCAATTGTACAAGGCCTAA+TGG - chr8_1:51230930-51230949 Msa1199260:intron 40.0%
GCAATTGTACAAGGCCTAAT+GGG - chr8_1:51230931-51230950 Msa1199260:intron 40.0%
TACCAAGGAATCTTCCCATT+AGG + chr8_1:51230948-51230967 None:intergenic 40.0%
ACGAACTGTACACCATTAGA+TGG - chr8_1:51231025-51231044 Msa1199260:intron 40.0%
AATATAGTCACTGTGGTTGG+AGG + chr8_1:51231066-51231085 None:intergenic 40.0%
AATAGCGGTGAACATGAATG+GGG - chr8_1:51231126-51231145 Msa1199260:intron 40.0%
!! ATGAATGGGGAGCATTGATT+GGG - chr8_1:51231139-51231158 Msa1199260:intron 40.0%
! CCCATTAGTCCTTTAAGGAA+AGG + chr8_1:51231204-51231223 None:intergenic 40.0%
GTCTTCCCATTAGTCCTTTA+AGG + chr8_1:51231209-51231228 None:intergenic 40.0%
! CACCAACTCTTGTTGTCATT+TGG - chr8_1:51231238-51231257 Msa1199260:CDS 40.0%
GACCAAATGACAACAAGAGT+TGG + chr8_1:51231243-51231262 None:intergenic 40.0%
!! TGTCATTTGGTCTGTGCTTT+TGG - chr8_1:51231251-51231270 Msa1199260:CDS 40.0%
GTCAATTCTTACCCAAACCA+AGG + chr8_1:51231289-51231308 None:intergenic 40.0%
!! GTTTGTTGTTTGACACGTGT+TGG - chr8_1:51231463-51231482 Msa1199260:intron 40.0%
!!! TCATTTTTTGGCTCCAAGTG+AGG - chr8_1:51231630-51231649 Msa1199260:CDS 40.0%
TAAGTCATCACAACCTCACT+TGG + chr8_1:51231646-51231665 None:intergenic 40.0%
TGTATATCTGTGTGTGTCTG+TGG + chr8_1:51231718-51231737 None:intergenic 40.0%
CTCAACATGGAAGCTAAGAG+TGG - chr8_1:51225647-51225666 Msa1199260:three_prime_UTR 45.0%
! GCTAAGAGTGGTCTTTTTGC+AGG - chr8_1:51225659-51225678 Msa1199260:three_prime_UTR 45.0%
GGGCTTATAAAAACGGATGC+AGG + chr8_1:51225774-51225793 None:intergenic 45.0%
GCCTAAGGCAGTGAAAAACT+TGG - chr8_1:51225946-51225965 Msa1199260:three_prime_UTR 45.0%
GGCCATGCTATGAGTATGAA+AGG - chr8_1:51226065-51226084 Msa1199260:CDS 45.0%
TGCAAAAGGAAGTCCAAGAG+TGG - chr8_1:51226432-51226451 Msa1199260:CDS 45.0%
AAAAGGAAGTCCAAGAGTGG+AGG - chr8_1:51226435-51226454 Msa1199260:CDS 45.0%
AAAGGAAGTCCAAGAGTGGA+GGG - chr8_1:51226436-51226455 Msa1199260:CDS 45.0%
TAAGGACTGAGTCTTCCTGA+AGG + chr8_1:51227396-51227415 None:intergenic 45.0%
CATCCAGTACCTGATGCAAT+TGG - chr8_1:51227477-51227496 Msa1199260:intron 45.0%
AGTCCAATTGCATCAGGTAC+TGG + chr8_1:51227483-51227502 None:intergenic 45.0%
CGATCGATGGGAAACCATTT+GGG + chr8_1:51227567-51227586 None:intergenic 45.0%
GGATTTGAACTCGACTCCTA+AGG - chr8_1:51227885-51227904 Msa1199260:CDS 45.0%
! AGCATTGAACTGATACCAGC+TGG - chr8_1:51227926-51227945 Msa1199260:CDS 45.0%
AACAACCGCAGATCCAATCA+AGG - chr8_1:51228017-51228036 Msa1199260:CDS 45.0%
TGGTTCCTTGATTGGATCTG+CGG + chr8_1:51228025-51228044 None:intergenic 45.0%
ACAAGAGGTGGTTCCTTGAT+TGG + chr8_1:51228033-51228052 None:intergenic 45.0%
AAGTGCTTCAAAGGTGAGCA+TGG + chr8_1:51228139-51228158 None:intergenic 45.0%
AAATACTTCTCAGGTGCACG+CGG + chr8_1:51228222-51228241 None:intergenic 45.0%
! CGGCGTTCTTTTACGTATGT+CGG + chr8_1:51228282-51228301 None:intergenic 45.0%
AAAAGAACGCCGTGCTATGA+AGG - chr8_1:51228290-51228309 Msa1199260:CDS 45.0%
GGTGAGAATAAATGCGCTTG+TGG - chr8_1:51228536-51228555 Msa1199260:intron 45.0%
TGAGAGTTCCATCAGAAGGT+TGG - chr8_1:51228568-51228587 Msa1199260:CDS 45.0%
!! TTTGTGTTGTTTCCTGGCCA+TGG + chr8_1:51228612-51228631 None:intergenic 45.0%
CACAATGGAGGAGACAATGA+AGG - chr8_1:51228666-51228685 Msa1199260:CDS 45.0%
! TGCTCCTTTTGTGCTCAACT+TGG - chr8_1:51228890-51228909 Msa1199260:intron 45.0%
! CAGTCCAAGTTGAGCACAAA+AGG + chr8_1:51228897-51228916 None:intergenic 45.0%
TAACCACATAACACGTCAGG+TGG + chr8_1:51229106-51229125 None:intergenic 45.0%
TGTTTGTGTCCGTGCTTCAT+AGG - chr8_1:51229199-51229218 Msa1199260:CDS 45.0%
!! AGACACCTCAAGTTGATCTG+CGG + chr8_1:51229291-51229310 None:intergenic 45.0%
! ATCAACTTGAGGTGTCTGGA+TGG - chr8_1:51229294-51229313 Msa1199260:CDS 45.0%
AGGTGTCTGGATGGAATTCA+AGG - chr8_1:51229303-51229322 Msa1199260:CDS 45.0%
GGTGTCTGGATGGAATTCAA+GGG - chr8_1:51229304-51229323 Msa1199260:CDS 45.0%
!! GAAGAGGATGGGAGCATTAT+AGG - chr8_1:51229444-51229463 Msa1199260:intron 45.0%
TCTTCACTGACAGAAGATGG+TGG - chr8_1:51229633-51229652 Msa1199260:intron 45.0%
CATGAATGGCCTCTTTAAGC+AGG + chr8_1:51229686-51229705 None:intergenic 45.0%
TGAGTTGTAGCTACGAAGAC+CGG - chr8_1:51229709-51229728 Msa1199260:intron 45.0%
AGCTCATACCAACCTGTTGA+TGG + chr8_1:51229931-51229950 None:intergenic 45.0%
!! CAACAGGTTGGTATGAGCTA+TGG - chr8_1:51229932-51229951 Msa1199260:CDS 45.0%
! TGCCGAAAAGAGCTCCTTTT+AGG - chr8_1:51230023-51230042 Msa1199260:intron 45.0%
! GCCGAAAAGAGCTCCTTTTA+GGG - chr8_1:51230024-51230043 Msa1199260:intron 45.0%
! CCCCTAAAAGGAGCTCTTTT+CGG + chr8_1:51230028-51230047 None:intergenic 45.0%
! CCGAAAAGAGCTCCTTTTAG+GGG - chr8_1:51230025-51230044 Msa1199260:intron 45.0%
CTACTGCCCATCTAAGAACT+TGG + chr8_1:51230084-51230103 None:intergenic 45.0%
CAAGTTCTTAGATGGGCAGT+AGG - chr8_1:51230082-51230101 Msa1199260:intron 45.0%
CATACCATATTGGACAGTGG+CGG + chr8_1:51230129-51230148 None:intergenic 45.0%
GAAGACTCAAGCTTCTCCAA+AGG - chr8_1:51230161-51230180 Msa1199260:intron 45.0%
TGGTATCATGGCATGATGCA+TGG - chr8_1:51230417-51230436 Msa1199260:intron 45.0%
! GGTAGGAACTTTTGCAAGTC+TGG - chr8_1:51230777-51230796 Msa1199260:CDS 45.0%
!! ATGGAGTGGAGTTAGTCTTG+AGG - chr8_1:51230852-51230871 Msa1199260:CDS 45.0%
!! GTGGAGTTAGTCTTGAGGAA+TGG - chr8_1:51230857-51230876 Msa1199260:CDS 45.0%
!! GAGTTAGTCTTGAGGAATGG+TGG - chr8_1:51230860-51230879 Msa1199260:CDS 45.0%
TTAAACTCGCCATCATCGTC+TGG + chr8_1:51231006-51231025 None:intergenic 45.0%
!! CATGAATGGGGAGCATTGAT+TGG - chr8_1:51231138-51231157 Msa1199260:intron 45.0%
GACTGTCTTTGTGTCTGTGT+TGG - chr8_1:51231524-51231543 Msa1199260:intron 45.0%
! TTGGTGCTTCATAGCATGCA+AGG - chr8_1:51231543-51231562 Msa1199260:intron 45.0%
TGGTGCTTCATAGCATGCAA+GGG - chr8_1:51231544-51231563 Msa1199260:intron 45.0%
!!! ATTATTTTTTATATAGTTTT+TGG + chr8_1:51226166-51226185 None:intergenic 5.0%
ATGTTGAGTGTGCGAGGGTA+GGG + chr8_1:51225635-51225654 None:intergenic 50.0%
CTTCCATGTTGAGTGTGCGA+GGG + chr8_1:51225640-51225659 None:intergenic 50.0%
TCTGTAGGGCGTACAGTAGA+AGG - chr8_1:51225998-51226017 Msa1199260:CDS 50.0%
TCTTCATCTCCCTCCACTCT+TGG + chr8_1:51226448-51226467 None:intergenic 50.0%
ACAGATGAGTGGAAGCAGCA+AGG - chr8_1:51226770-51226789 Msa1199260:intron 50.0%
TGACGCGGTTGATCCAGAAA+AGG - chr8_1:51226811-51226830 Msa1199260:intron 50.0%
GCAGCTTATGGCACGTCTAT+AGG - chr8_1:51227085-51227104 Msa1199260:CDS 50.0%
GCGATCGATGGGAAACCATT+TGG + chr8_1:51227568-51227587 None:intergenic 50.0%
AGGTATGTCTCGCGATCGAT+GGG + chr8_1:51227579-51227598 None:intergenic 50.0%
AAGGTATGTCTCGCGATCGA+TGG + chr8_1:51227580-51227599 None:intergenic 50.0%
TTCAGGACCTGACTGAAAGG+CGG + chr8_1:51227605-51227624 None:intergenic 50.0%
AGCTTCAGGACCTGACTGAA+AGG + chr8_1:51227608-51227627 None:intergenic 50.0%
AAAGATGAGACACCATGGCC+AGG - chr8_1:51228597-51228616 Msa1199260:CDS 50.0%
! TACCAAGGCGTTCATTGCAC+CGG + chr8_1:51228760-51228779 None:intergenic 50.0%
TTGCCACCTGACGTGTTATG+TGG - chr8_1:51229100-51229119 Msa1199260:CDS 50.0%
TTGTGTCCGTGCTTCATAGG+CGG - chr8_1:51229202-51229221 Msa1199260:CDS 50.0%
TTAAGGCCGCCTATGAAGCA+CGG + chr8_1:51229211-51229230 None:intergenic 50.0%
! GCAGATCAACTTGAGGTGTC+TGG - chr8_1:51229290-51229309 Msa1199260:CDS 50.0%
GGGCCTGTTTATGTTGGATC+AGG - chr8_1:51229324-51229343 Msa1199260:CDS 50.0%
GCATACTCGTGGTTGGAGAT+CGG - chr8_1:51229991-51230010 Msa1199260:intron 50.0%
ATTGGGGCTGTTCCCCTAAA+AGG + chr8_1:51230040-51230059 None:intergenic 50.0%
CGCCACTGTCCAATATGGTA+TGG - chr8_1:51230127-51230146 Msa1199260:intron 50.0%
GGCCTAATGGGAAGATTCCT+TGG - chr8_1:51230943-51230962 Msa1199260:intron 50.0%
GGGCCTGATGTTAAGCAATG+TGG - chr8_1:51231330-51231349 Msa1199260:CDS 50.0%
CATGTTGAGTGTGCGAGGGT+AGG + chr8_1:51225636-51225655 None:intergenic 55.0%
CTACCCTCGCACACTCAACA+TGG - chr8_1:51225634-51225653 Msa1199260:three_prime_UTR 55.0%
GCTTCCATGTTGAGTGTGCG+AGG + chr8_1:51225641-51225660 None:intergenic 55.0%
CATAGCATGGCCTGCAGACA+GGG + chr8_1:51226057-51226076 None:intergenic 55.0%
TCATAGCATGGCCTGCAGAC+AGG + chr8_1:51226058-51226077 None:intergenic 55.0%
ACCTTGACCGCCTTTCAGTC+AGG - chr8_1:51227595-51227614 Msa1199260:CDS 55.0%
ACCTGACTGAAAGGCGGTCA+AGG + chr8_1:51227599-51227618 None:intergenic 55.0%
!! GAGCGTTTTGACGCCTTAGG+AGG + chr8_1:51229387-51229406 None:intergenic 55.0%
!!! CGAGAGCGTTTTGACGCCTT+AGG + chr8_1:51229390-51229409 None:intergenic 55.0%
CTACGAAGACCGGACACTGT+GGG - chr8_1:51229719-51229738 Msa1199260:intron 55.0%
TACGAAGACCGGACACTGTG+GGG - chr8_1:51229720-51229739 Msa1199260:intron 55.0%
TTGGACAGTGGCGGCTGAAT+AGG + chr8_1:51230120-51230139 None:intergenic 55.0%
TCAGCCGCCACTGTCCAATA+TGG - chr8_1:51230122-51230141 Msa1199260:intron 55.0%
TCAGTGAGCAAGCAGACAGC+CGG + chr8_1:51230253-51230272 None:intergenic 55.0%
!! TCGAAGGCACCAGACGATGA+TGG - chr8_1:51230994-51231013 Msa1199260:intron 55.0%
ACTGAACCTAGCACCAGCCA+AGG - chr8_1:51231687-51231706 Msa1199260:exon 55.0%
CTGAACCTAGCACCAGCCAA+GGG - chr8_1:51231688-51231707 Msa1199260:exon 55.0%
GTGTGTCTGTGGTTCTCCCT+TGG + chr8_1:51231707-51231726 None:intergenic 55.0%
GAGTGTGCGAGGGTAGGGAA+TGG + chr8_1:51225630-51225649 None:intergenic 60.0%
AGTGTGGCTTCCCTGTCTGC+AGG - chr8_1:51226044-51226063 Msa1199260:CDS 60.0%
AGCCGGTGCAATGAACGCCT+TGG - chr8_1:51228755-51228774 Msa1199260:CDS 60.0%
GCTACGAAGACCGGACACTG+TGG - chr8_1:51229718-51229737 Msa1199260:intron 60.0%
CCTCGTATCCCCACAGTGTC+CGG + chr8_1:51229731-51229750 None:intergenic 60.0%
GTTCTCCCTTGGCTGGTGCT+AGG + chr8_1:51231696-51231715 None:intergenic 60.0%
GTCTGTGGTTCTCCCTTGGC+TGG + chr8_1:51231703-51231722 None:intergenic 60.0%
GCGTCGTGTCGTGTCGTGTC+TGG - chr8_1:51226305-51226324 Msa1199260:CDS 65.0%
CTTCTCAGGTGCACGCGGCT+CGG + chr8_1:51228217-51228236 None:intergenic 65.0%
CCGGACACTGTGGGGATACG+AGG - chr8_1:51229728-51229747 Msa1199260:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 51225594 51231748 51225594 ID=Msa1199260;Name=Msa1199260
chr8_1 mRNA 51225594 51231748 51225594 ID=Msa1199260-mRNA-1;Parent=Msa1199260;Name=Msa1199260-mRNA-1;_AED=0.05;_eAED=0.05;_QI=59|1|1|1|1|1|12|383|981
chr8_1 exon 51225594 51226564 51225594 ID=Msa1199260-mRNA-1:exon:16212;Parent=Msa1199260-mRNA-1
chr8_1 exon 51227051 51227404 51227051 ID=Msa1199260-mRNA-1:exon:16211;Parent=Msa1199260-mRNA-1
chr8_1 exon 51227593 51227792 51227593 ID=Msa1199260-mRNA-1:exon:16210;Parent=Msa1199260-mRNA-1
chr8_1 exon 51227877 51228048 51227877 ID=Msa1199260-mRNA-1:exon:16209;Parent=Msa1199260-mRNA-1
chr8_1 exon 51228266 51228478 51228266 ID=Msa1199260-mRNA-1:exon:16208;Parent=Msa1199260-mRNA-1
chr8_1 exon 51228566 51228826 51228566 ID=Msa1199260-mRNA-1:exon:16207;Parent=Msa1199260-mRNA-1
chr8_1 exon 51229031 51229376 51229031 ID=Msa1199260-mRNA-1:exon:16206;Parent=Msa1199260-mRNA-1
chr8_1 exon 51229726 51229992 51229726 ID=Msa1199260-mRNA-1:exon:16205;Parent=Msa1199260-mRNA-1
chr8_1 exon 51230505 51230601 51230505 ID=Msa1199260-mRNA-1:exon:16204;Parent=Msa1199260-mRNA-1
chr8_1 exon 51230726 51230902 51230726 ID=Msa1199260-mRNA-1:exon:16203;Parent=Msa1199260-mRNA-1
chr8_1 exon 51231200 51231395 51231200 ID=Msa1199260-mRNA-1:exon:16202;Parent=Msa1199260-mRNA-1
chr8_1 exon 51231615 51231748 51231615 ID=Msa1199260-mRNA-1:exon:16201;Parent=Msa1199260-mRNA-1
chr8_1 five_prime_UTR 51231690 51231748 51231690 ID=Msa1199260-mRNA-1:five_prime_utr;Parent=Msa1199260-mRNA-1
chr8_1 CDS 51231615 51231689 51231615 ID=Msa1199260-mRNA-1:cds;Parent=Msa1199260-mRNA-1
chr8_1 CDS 51231200 51231395 51231200 ID=Msa1199260-mRNA-1:cds;Parent=Msa1199260-mRNA-1
chr8_1 CDS 51230726 51230902 51230726 ID=Msa1199260-mRNA-1:cds;Parent=Msa1199260-mRNA-1
chr8_1 CDS 51230505 51230601 51230505 ID=Msa1199260-mRNA-1:cds;Parent=Msa1199260-mRNA-1
chr8_1 CDS 51229726 51229992 51229726 ID=Msa1199260-mRNA-1:cds;Parent=Msa1199260-mRNA-1
chr8_1 CDS 51229031 51229376 51229031 ID=Msa1199260-mRNA-1:cds;Parent=Msa1199260-mRNA-1
chr8_1 CDS 51228566 51228826 51228566 ID=Msa1199260-mRNA-1:cds;Parent=Msa1199260-mRNA-1
chr8_1 CDS 51228266 51228478 51228266 ID=Msa1199260-mRNA-1:cds;Parent=Msa1199260-mRNA-1
chr8_1 CDS 51227877 51228048 51227877 ID=Msa1199260-mRNA-1:cds;Parent=Msa1199260-mRNA-1
chr8_1 CDS 51227593 51227792 51227593 ID=Msa1199260-mRNA-1:cds;Parent=Msa1199260-mRNA-1
chr8_1 CDS 51227051 51227404 51227051 ID=Msa1199260-mRNA-1:cds;Parent=Msa1199260-mRNA-1
chr8_1 CDS 51225977 51226564 51225977 ID=Msa1199260-mRNA-1:cds;Parent=Msa1199260-mRNA-1
chr8_1 three_prime_UTR 51225594 51225976 51225594 ID=Msa1199260-mRNA-1:three_prime_utr;Parent=Msa1199260-mRNA-1
Gene Sequence

>Msa1199260

ATGGAAGCTAAGAGTGGTCTTTTTGCAGGGTCTCTTAACAGCAATGAACTTGTGGTCATCCAAAAACAAAATGAGCCTAAGGCAGTGAAAAACTTGGATGGTCAAAATTGTGAGATATGTGGTGATTCTGTAGGGCGTACAGTAGAAGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGCTTCCCTGTCTGCAGGCCATGCTATGAGTATGAAAGGAAAGAAGGGTCTCAAAATTGCCCTCAATGCCATACAAGATACAAGCGTATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAAGATGAAGAAGATGTGGATGATATTGAACAAGAATTTAAAATGGAAGAGGAAAAGTACAAGCTTATGCATGAAGATAATATGAATAGCATTGATGATGATGATACAAAATATAGGGAGCAACCCCTATATTCTCACAGTATTGGAGAAAATTATGGTGCAAAATTAGATAACAAGGAGAAAACAGATGAGTGGAAGCAGCAAGGAAATCTGTTGATTGAAACTGACGCGGTTGATCCAGAAAAGGCCATGAAAGATGAAACTAGACAGCCACTATCAAGGAAAGTAGCAATACCTTCAGGAAGACTCAGTCCTTATAGAATGATGGTTGTGGCAAGGCTCATCCTTCTATTACTCTTCTTTGAGTACAGAATCTCTCATCCAGTACCTGATGCAATTGGACTTTGGTTCATATCAGTATCATGTGAAATCTGGCTTGCATTGTCATGGATACTTGATCAGATTCCCAAATGGTTTCCCATCGATCGCGAGACATACCTTGACCGCCTTTCAGTCAGGTTTGAGCCGGAAAACAAGCCTAATATGCTTTCTCCAATAGATATCTTTATAACAACCGCAGATCCAATCAAGGAACCACCTCTTGTTACAGCAAATACGGTTCTTTCAATTTTGGCACTAGATTATCCTGCAAACAAAATTTCATGTTACGTTTCTGATGACGGCGCTTCCATGCTCACCTTTGAAGCACTTCAAGAAACAGCTGAATTTGCGCAAAAATGGGTACCTTTCTGTAAACAATTCTCTACCGAGCCGCGTGCACCTGAGAAGTATTTCTCTGAGAAGATAGACTTTCTTAAGGATAAGCTTCAACCGACATACGTAAAAGAACGCCGTGCTATGAAGAGAGAATATGAAGAGTTTAAGGTGAGAATAAATGCGCTTGTGGCTAAATCTATGAGAGTTCCATCAGAAGGTTGGAGTATGAAAGATGAGACACCATGGCCAGGAAACAACACAAAAGATCATCCAAGTATGATACAAATACTTCTTGGTCACAATGGAGGAGACAATGAAGGAAATGAACTTCCATCTCTCGTCTACATTTCTAGAGAGAAAAGACCTGCATTTCAACATCACACAAAAGCCGGTGCAATGAACGCCTTGCTTCGTGTATCGGCAGTATTGAGCAATGCTCCTTTTGTGCTCAACTTGGACTGCAATCATTATGTGAATTACAGCAAAGTTGTGAGAGAAGCCATGTGTTTCTTTATGGACATTCAACTTGGGAATAGTATTGCTTTTGTTCAGTTTCCACTGAGATTTGATAGTCTTGACAGGAACGATCGTTATGCCAACAAAAACACTATTTTATTTGATATCAACTTGAGGTGTCTGGATGGAATTCAAGGGCCTGTTTATGTTGGATCAGGTTGTATATTCAGAAGGAAAGCTTTAAATGGCTTTGATCCTCCTAAGGCGTCAAAACGCTCTCGAGTTGTACAAGTTCACTCAAAACAGGATGAAAATGAAGAGGATGGGAGCATTATAGAAGCAACTGATGAAGACAAGCAGCCATTGCAATTAGATAAGGATACTGAAAATAAATTTGGAAAGTCTACACTCTTCATGAATTCTTCACTGACAGAAGATGGTGGTGTAGATCCTTCTTCAACTCAAGAAGTCCTGCTTAAAGAGGCCATTCATGTCATGAGTTGTAGCTACGAAGACCGGACACTGTGGGGATACGAGGTTGGTATGAGCTATGGATCTATAGCATCAGATATTCTAACAAGTTTAAAGATGCATACTCGTGGTTGGAGATCGGTATACTGCATGCCGAAAAGAGCTCCTTTTAGGGGAACAGCCCCAATCAATCTTACAGAAAGACTTAACCAAGTTCTTAGATGGGCAGTAGGATCACTTGAGATCCTATTCAGCCGCCACTGTCCAATATGGTATGGTTTTAAAGAAGGAAGACTCAAGCTTCTCCAAAGGATTGCCTATATTAACAGCACTGTCTACCCTTTTAGTGCATTGCCTCTCATAATATATTGTATCGTTCCGGCTGTCTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGGAACTTTTGCAAGTCTGGTATTCATTTCTCTATTCATCTCAATCTTCGCCTCTTCTATTCTTGAATTGAGATGGAGTGGAGTTAGTCTTGAGGAATGGTGGAGAAATCAACAATTTTGGGTCATTGGAAGTATATCAGCACATCTCTTTGCAATTGTACAAGGCCTAATGGGAAGATTCCTTGGTAGATTTAATGCACATTTCAACATTGTATCGAAGGCACCAGACGATGATGGCGAGTTTAACGAACTGTACACCATTAGATGGACAGTATTACTAATACCTCCAACCACAGTGACTATATTCAACATTATTGGTATTGTTGCTGGTTTCACAGATGCTATAAATAGCGGTGAACATGAATGGGGAGCATTGATTGGGAAATTGTTCTTTTCTTCATGGGTTATTGCTCATCTTTATCCTTTCCTTAAAGGACTAATGGGAAGACAGAATAGAACACCAACTCTTGTTGTCATTTGGTCTGTGCTTTTGGCTTCTATCTTTTCCTTGGTTTGGGTAAGAATTGACCCTTTTGTGTTGAAAACTAAGGGGCCTGATGTTAAGCAATGTGGAATTAGTTGTTGA
Protein sequence

>Msa1199260

MEAKSGLFAGSLNSNELVVIQKQNEPKAVKNLDGQNCEICGDSVGRTVEGDLFVACEECGFPVCRPCYEYERKEGSQNCPQCHTRYKRIKGSPRVEGDEDEEDVDDIEQEFKMEEEKYKLMHEDNMNSIDDDDTKYREQPLYSHSIGENYGAKLDNKEKTDEWKQQGNLLIETDAVDPEKAMKDETRQPLSRKVAIPSGRLSPYRMMVVARLILLLLFFEYRISHPVPDAIGLWFISVSCEIWLALSWILDQIPKWFPIDRETYLDRLSVRFEPENKPNMLSPIDIFITTADPIKEPPLVTANTVLSILALDYPANKISCYVSDDGASMLTFEALQETAEFAQKWVPFCKQFSTEPRAPEKYFSEKIDFLKDKLQPTYVKERRAMKREYEEFKVRINALVAKSMRVPSEGWSMKDETPWPGNNTKDHPSMIQILLGHNGGDNEGNELPSLVYISREKRPAFQHHTKAGAMNALLRVSAVLSNAPFVLNLDCNHYVNYSKVVREAMCFFMDIQLGNSIAFVQFPLRFDSLDRNDRYANKNTILFDINLRCLDGIQGPVYVGSGCIFRRKALNGFDPPKASKRSRVVQVHSKQDENEEDGSIIEATDEDKQPLQLDKDTENKFGKSTLFMNSSLTEDGGVDPSSTQEVLLKEAIHVMSCSYEDRTLWGYEVGMSYGSIASDILTSLKMHTRGWRSVYCMPKRAPFRGTAPINLTERLNQVLRWAVGSLEILFSRHCPIWYGFKEGRLKLLQRIAYINSTVYPFSALPLIIYCIVPAVCLLTDKFITPSVGTFASLVFISLFISIFASSILELRWSGVSLEEWWRNQQFWVIGSISAHLFAIVQGLMGRFLGRFNAHFNIVSKAPDDDGEFNELYTIRWTVLLIPPTTVTIFNIIGIVAGFTDAINSGEHEWGALIGKLFFSSWVIAHLYPFLKGLMGRQNRTPTLVVIWSVLLASIFSLVWVRIDPFVLKTKGPDVKQCGISC*