Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547390 | XP_003606412.1 | 47.718 | 241 | 88 | 8 | 50 | 255 | 53 | 290 | 2.28e-52 | 190 |
| Msa0547390 | XP_003606412.1 | 97.826 | 276 | 6 | 0 | 234 | 509 | 16 | 291 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547390 | sp|Q8LEE9|FLA12_ARATH | 54.000 | 150 | 67 | 2 | 291 | 439 | 39 | 187 | 1.14e-43 | 157 |
| Msa0547390 | sp|Q8LEE9|FLA12_ARATH | 44.295 | 149 | 63 | 3 | 67 | 195 | 39 | 187 | 2.06e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547390 | G7JPF4 | 47.718 | 241 | 88 | 8 | 50 | 255 | 53 | 290 | 1.09e-52 | 190 |
| Msa0547390 | G7JPF4 | 97.826 | 276 | 6 | 0 | 234 | 509 | 16 | 291 | 0.0 | 536 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142380 | Msa0547390 | 0.827842 | 1.251420e-54 | -8.615850e-47 |
| Msa0194000 | Msa0547390 | 0.876521 | 1.306937e-68 | -8.615850e-47 |
| Msa0221830 | Msa0547390 | 0.819882 | 9.196577e-53 | -8.615850e-47 |
| Msa0235870 | Msa0547390 | 0.850364 | 1.781139e-60 | -8.615850e-47 |
| Msa0250450 | Msa0547390 | 0.852605 | 4.137743e-61 | -8.615850e-47 |
| Msa0263440 | Msa0547390 | 0.878119 | 3.633521e-69 | -8.615850e-47 |
| Msa0269380 | Msa0547390 | 0.837346 | 5.487400e-57 | -8.615850e-47 |
| Msa0288900 | Msa0547390 | 0.906471 | 1.432081e-80 | -8.615850e-47 |
| Msa0301030 | Msa0547390 | 0.889000 | 3.582323e-73 | -8.615850e-47 |
| Msa0314220 | Msa0547390 | 0.893478 | 6.054416e-75 | -8.615850e-47 |
| Msa0314330 | Msa0547390 | 0.888958 | 3.719602e-73 | -8.615850e-47 |
| Msa0327020 | Msa0547390 | 0.841225 | 5.405200e-58 | -8.615850e-47 |
| Msa0338580 | Msa0547390 | 0.812267 | 4.619540e-51 | -8.615850e-47 |
| Msa0485970 | Msa0547390 | 0.897862 | 9.310627e-77 | -8.615850e-47 |
| Msa0547390 | Msa0564950 | 0.886503 | 3.230964e-72 | -8.615850e-47 |
| Msa0547390 | Msa0565260 | 0.924020 | 1.229798e-89 | -8.615850e-47 |
| Msa0547390 | Msa0580580 | 0.879317 | 1.375180e-69 | -8.615850e-47 |
| Msa0547390 | Msa0602110 | 0.916746 | 1.228617e-85 | -8.615850e-47 |
| Msa0547390 | Msa0618050 | 0.882207 | 1.263604e-70 | -8.615850e-47 |
| Msa0547390 | Msa0618600 | 0.928437 | 2.892270e-92 | -8.615850e-47 |
| Msa0547390 | Msa0643240 | 0.921714 | 2.507722e-88 | -8.615850e-47 |
| Msa0547390 | Msa0657380 | 0.902000 | 1.514656e-78 | -8.615850e-47 |
| Msa0547390 | Msa0682920 | 0.869141 | 3.865743e-66 | -8.615850e-47 |
| Msa0547390 | Msa0708510 | 0.924612 | 5.583168e-90 | -8.615850e-47 |
| Msa0547390 | Msa0792190 | 0.839538 | 1.492877e-57 | -8.615850e-47 |
| Msa0547390 | Msa1035290 | 0.836749 | 7.796844e-57 | -8.615850e-47 |
| Msa0547390 | Msa1075380 | 0.851394 | 9.130014e-61 | -8.615850e-47 |
| Msa0547390 | Msa1116460 | 0.852744 | 3.774776e-61 | -8.615850e-47 |
| Msa0547390 | Msa1162860 | 0.802795 | 4.734057e-49 | -8.615850e-47 |
| Msa0547390 | Msa1199250 | 0.923979 | 1.297443e-89 | -8.615850e-47 |
| Msa0547390 | Msa1199260 | 0.869303 | 3.424557e-66 | -8.615850e-47 |
| Msa0547390 | Msa1252480 | 0.931813 | 2.166515e-94 | -8.615850e-47 |
| Msa0547390 | Msa1267350 | 0.837225 | 5.891769e-57 | -8.615850e-47 |
| Msa0547390 | Msa1290460 | 0.800703 | 1.272881e-48 | -8.615850e-47 |
| Msa0547390 | Msa1293220 | 0.888040 | 8.397713e-73 | -8.615850e-47 |
| Msa0547390 | Msa1421310 | 0.851351 | 9.392875e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547390 | MtrunA17_Chr4g0029441 | 97.826 | 276 | 6 | 0 | 234 | 509 | 16 | 291 | 0.0 | 536 |
| Msa0547390 | MtrunA17_Chr4g0029441 | 47.718 | 241 | 88 | 8 | 50 | 255 | 53 | 290 | 2.10e-56 | 190 |
| Msa0547390 | MtrunA17_Chr4g0029501 | 93.818 | 275 | 17 | 0 | 234 | 508 | 16 | 290 | 8.34e-171 | 483 |
| Msa0547390 | MtrunA17_Chr4g0029501 | 48.689 | 267 | 96 | 10 | 14 | 244 | 18 | 279 | 8.75e-58 | 193 |
| Msa0547390 | MtrunA17_Chr4g0029431 | 90.119 | 253 | 5 | 2 | 1 | 233 | 1 | 253 | 1.12e-151 | 434 |
| Msa0547390 | MtrunA17_Chr4g0029431 | 55.330 | 197 | 79 | 3 | 248 | 440 | 25 | 216 | 2.10e-63 | 207 |
| Msa0547390 | MtrunA17_Chr4g0026611 | 79.422 | 277 | 54 | 2 | 234 | 507 | 18 | 294 | 8.03e-136 | 394 |
| Msa0547390 | MtrunA17_Chr4g0026611 | 48.536 | 239 | 86 | 7 | 1 | 204 | 3 | 239 | 8.02e-54 | 183 |
| Msa0547390 | MtrunA17_Chr2g0326411 | 61.232 | 276 | 95 | 6 | 234 | 503 | 16 | 285 | 1.46e-91 | 281 |
| Msa0547390 | MtrunA17_Chr2g0326411 | 45.833 | 216 | 89 | 5 | 2 | 194 | 6 | 216 | 7.22e-47 | 164 |
| Msa0547390 | MtrunA17_Chr2g0326421 | 57.588 | 257 | 74 | 8 | 8 | 235 | 6 | 256 | 4.68e-73 | 233 |
| Msa0547390 | MtrunA17_Chr2g0326421 | 47.036 | 253 | 118 | 5 | 260 | 507 | 41 | 282 | 8.76e-66 | 214 |
| Msa0547390 | MtrunA17_Chr8g0379611 | 56.667 | 210 | 78 | 3 | 240 | 438 | 17 | 224 | 3.35e-71 | 229 |
| Msa0547390 | MtrunA17_Chr8g0379611 | 48.583 | 247 | 85 | 7 | 16 | 228 | 16 | 254 | 1.48e-56 | 191 |
| Msa0547390 | MtrunA17_Chr2g0284411 | 58.000 | 200 | 75 | 2 | 291 | 490 | 68 | 258 | 8.88e-70 | 224 |
| Msa0547390 | MtrunA17_Chr2g0284411 | 50.199 | 251 | 99 | 5 | 1 | 230 | 1 | 246 | 1.42e-55 | 187 |
| Msa0547390 | MtrunA17_Chr2g0284431 | 58.000 | 200 | 75 | 2 | 291 | 490 | 89 | 279 | 6.69e-69 | 223 |
| Msa0547390 | MtrunA17_Chr2g0284431 | 51.394 | 251 | 96 | 5 | 1 | 230 | 22 | 267 | 4.92e-56 | 189 |
| Msa0547390 | MtrunA17_Chr2g0284451 | 45.862 | 290 | 116 | 11 | 234 | 501 | 18 | 288 | 2.00e-64 | 211 |
| Msa0547390 | MtrunA17_Chr2g0284451 | 40.741 | 270 | 110 | 8 | 1 | 230 | 2 | 261 | 2.99e-46 | 163 |
| Msa0547390 | MtrunA17_Chr8g0379621 | 56.281 | 199 | 67 | 7 | 249 | 438 | 55 | 242 | 6.79e-62 | 205 |
| Msa0547390 | MtrunA17_Chr8g0379621 | 48.402 | 219 | 82 | 6 | 38 | 225 | 55 | 273 | 1.99e-48 | 169 |
| Msa0547390 | MtrunA17_Chr8g0379631 | 51.754 | 228 | 85 | 7 | 234 | 438 | 17 | 242 | 2.80e-61 | 203 |
| Msa0547390 | MtrunA17_Chr8g0379631 | 48.430 | 223 | 82 | 7 | 36 | 225 | 51 | 273 | 2.09e-48 | 169 |
| Msa0547390 | MtrunA17_Chr4g0029331 | 50.481 | 208 | 71 | 5 | 236 | 443 | 37 | 212 | 9.64e-54 | 182 |
| Msa0547390 | MtrunA17_Chr4g0029331 | 45.413 | 218 | 70 | 6 | 1 | 198 | 24 | 212 | 3.55e-46 | 162 |
| Msa0547390 | MtrunA17_Chr2g0326431 | 54.362 | 149 | 67 | 1 | 291 | 439 | 41 | 188 | 1.14e-47 | 165 |
| Msa0547390 | MtrunA17_Chr2g0326431 | 44.221 | 199 | 84 | 4 | 67 | 239 | 41 | 238 | 3.66e-39 | 142 |
| Msa0547390 | MtrunA17_Chr7g0263981 | 44.304 | 158 | 86 | 2 | 283 | 439 | 32 | 188 | 5.65e-36 | 134 |
| Msa0547390 | MtrunA17_Chr7g0263981 | 42.581 | 155 | 67 | 3 | 63 | 196 | 36 | 189 | 5.29e-29 | 115 |
| Msa0547390 | MtrunA17_Chr2g0325021 | 39.394 | 198 | 112 | 2 | 284 | 474 | 31 | 227 | 1.74e-28 | 113 |
| Msa0547390 | MtrunA17_Chr2g0325021 | 35.000 | 160 | 85 | 2 | 56 | 196 | 27 | 186 | 5.84e-23 | 97.8 |
| Msa0547390 | MtrunA17_Chr7g0246041 | 32.967 | 182 | 115 | 3 | 284 | 465 | 177 | 351 | 9.46e-18 | 85.5 |
| Msa0547390 | MtrunA17_Chr7g0246041 | 32.558 | 172 | 93 | 5 | 67 | 217 | 184 | 353 | 3.45e-12 | 68.2 |
| Msa0547390 | MtrunA17_Chr5g0448001 | 30.233 | 215 | 136 | 6 | 290 | 499 | 47 | 252 | 7.22e-16 | 77.8 |
| Msa0547390 | MtrunA17_Chr5g0448001 | 31.677 | 161 | 89 | 5 | 67 | 207 | 48 | 207 | 9.53e-12 | 65.5 |
| Msa0547390 | MtrunA17_Chr5g0448211 | 28.934 | 197 | 125 | 7 | 258 | 453 | 167 | 349 | 1.24e-11 | 66.6 |
| Msa0547390 | MtrunA17_Chr2g0296571 | 31.169 | 154 | 99 | 4 | 290 | 439 | 194 | 344 | 1.38e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0547390 | AT5G60490.1 | 54.000 | 150 | 67 | 2 | 291 | 439 | 39 | 187 | 1.16e-44 | 157 |
| Msa0547390 | AT5G60490.1 | 44.295 | 149 | 63 | 3 | 67 | 195 | 39 | 187 | 2.09e-32 | 124 |
| Msa0547390 | AT5G03170.1 | 47.305 | 167 | 87 | 1 | 284 | 449 | 29 | 195 | 3.18e-44 | 156 |
| Msa0547390 | AT5G03170.1 | 40.341 | 176 | 83 | 3 | 53 | 206 | 22 | 197 | 5.35e-34 | 129 |
| Msa0547390 | AT2G20520.1 | 36.134 | 238 | 130 | 7 | 270 | 504 | 19 | 237 | 5.49e-27 | 109 |
| Msa0547390 | AT2G20520.1 | 34.375 | 192 | 97 | 4 | 60 | 223 | 31 | 221 | 6.13e-22 | 95.5 |
| Msa0547390 | AT5G44130.1 | 36.816 | 201 | 113 | 6 | 290 | 486 | 35 | 225 | 1.32e-26 | 108 |
| Msa0547390 | AT5G44130.1 | 33.333 | 180 | 92 | 5 | 67 | 222 | 36 | 211 | 1.09e-19 | 89.0 |
| Msa0547390 | AT1G03870.1 | 33.333 | 213 | 131 | 5 | 290 | 501 | 38 | 240 | 4.15e-24 | 101 |
| Msa0547390 | AT1G03870.1 | 28.788 | 198 | 115 | 5 | 67 | 239 | 39 | 235 | 1.50e-17 | 82.8 |
| Msa0547390 | AT3G60900.1 | 29.121 | 182 | 124 | 2 | 284 | 465 | 183 | 359 | 2.93e-15 | 78.2 |
| Msa0547390 | AT3G46550.1 | 30.645 | 186 | 115 | 7 | 276 | 451 | 193 | 374 | 1.00e-12 | 70.5 |
| Msa0547390 | AT2G04780.1 | 30.263 | 152 | 100 | 3 | 290 | 439 | 45 | 192 | 6.45e-12 | 66.2 |
| Msa0547390 | AT2G04780.2 | 30.263 | 152 | 100 | 3 | 290 | 439 | 45 | 192 | 6.45e-12 | 66.2 |
Find 112 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGATGGTGCTGTTGCTTT+TGG | 0.250966 | 4_1:-40351388 | None:intergenic |
| AACATTCAGTTCCACCTTTC+CGG | 0.262448 | 4_1:-40354591 | None:intergenic |
| TACCTTGATCCTGATCATTT+TGG | 0.263017 | 4_1:-40352011 | None:intergenic |
| GGCTCCTAAAGCTGCTAATA+AGG | 0.272377 | 4_1:+40351963 | Msa0547390:CDS |
| CAAGCTCGCGATTTATCATT+TGG | 0.291478 | 4_1:+40351864 | Msa0547390:CDS |
| TCTGTTGAGTCTGGTGATTC+AGG | 0.294510 | 4_1:-40351433 | None:intergenic |
| CCGGATGACAGCGCCTTTGC+AGG | 0.296032 | 4_1:+40354428 | Msa0547390:CDS |
| ATAAATAGCAAGACGTTTAT+CGG | 0.298196 | 4_1:-40354684 | None:intergenic |
| ATCTGATGATGTATCTTTAT+CGG | 0.306273 | 4_1:-40354819 | None:intergenic |
| CGCTACTAAGGCACCTGCTT+TGG | 0.312281 | 4_1:+40351915 | Msa0547390:CDS |
| ACCGGGGAAGGCACCATCTT+TGG | 0.312457 | 4_1:+40354757 | Msa0547390:CDS |
| GCTGTGTCGGTTGAAGGTTC+TGG | 0.334371 | 4_1:-40354782 | None:intergenic |
| TCAACAGTGCCTGCTGTGTC+AGG | 0.335761 | 4_1:-40354275 | None:intergenic |
| CGTCTTGCTATTTATAAAGT+TGG | 0.340020 | 4_1:+40354692 | Msa0547390:CDS |
| TTCTCCTTATTAGCAGCTTT+AGG | 0.349370 | 4_1:-40351967 | None:intergenic |
| TTACCAGCTATTGTTTGAAC+AGG | 0.356173 | 4_1:-40351736 | None:intergenic |
| GCCTTTGCTGTGTCGGTTGA+AGG | 0.358908 | 4_1:-40354788 | None:intergenic |
| ACATTCAGTTCCACCTTTCC+GGG | 0.360231 | 4_1:-40354590 | None:intergenic |
| CATCACAACAATCCTCAAAA+AGG | 0.364595 | 4_1:+40351471 | Msa0547390:CDS |
| CCAACTCAATTCACAGCTAT+TGG | 0.370350 | 4_1:+40354373 | Msa0547390:CDS |
| AAGGAAGGTACCAATGGTTT+AGG | 0.375784 | 4_1:-40354227 | None:intergenic |
| CCTGCAAAGGCGCTGTCATC+CGG | 0.387064 | 4_1:-40354428 | None:intergenic |
| TGGCAAAGTGCTTCTTCCTA+TGG | 0.388422 | 4_1:+40354712 | Msa0547390:CDS |
| AGGATTGTTGTGATGTCGTC+AGG | 0.395586 | 4_1:-40351463 | None:intergenic |
| AACAATGTCAGTCTTTCAAC+CGG | 0.416183 | 4_1:+40351799 | Msa0547390:CDS |
| AACCCTGTGAGAACACTTGC+CGG | 0.418886 | 4_1:+40354560 | Msa0547390:CDS |
| GTTGTTACTGCTTCCGTTGT+GGG | 0.419419 | 4_1:+40351823 | Msa0547390:CDS |
| CACCTTTCCGGGTTTAGCTC+CGG | 0.421883 | 4_1:-40354579 | None:intergenic |
| TCTGATGATGTATCTTTATC+GGG | 0.424899 | 4_1:-40354818 | None:intergenic |
| CTTGAAAATGCTGAATCGTC+TGG | 0.426953 | 4_1:-40351601 | None:intergenic |
| GCAGCTGGTGTGGTTGGAGC+TGG | 0.431548 | 4_1:-40354200 | None:intergenic |
| GGCTCTATCAAGATTGTGTA+TGG | 0.434280 | 4_1:+40354878 | Msa0547390:CDS |
| GCTGGTAGTGTAGGTTGTAT+AGG | 0.438970 | 4_1:-40354182 | None:intergenic |
| TGTATGCCTTCGCCTTTCTC+AGG | 0.442653 | 4_1:-40354310 | None:intergenic |
| GGGACGGAGTCTGTTGAGTC+TGG | 0.453003 | 4_1:-40351442 | None:intergenic |
| AACTCGTACTGCTGCTGCTA+AGG | 0.455742 | 4_1:+40351942 | Msa0547390:CDS |
| AATGTGGGGACTAATGATTT+TGG | 0.458446 | 4_1:-40351409 | None:intergenic |
| AATCCAACTGAAAACAAGTC+TGG | 0.463708 | 4_1:+40354857 | Msa0547390:CDS |
| GTCCATCGGAAAGAGAGTTA+AGG | 0.464359 | 4_1:-40354466 | None:intergenic |
| GCCAAAGATGGTGCCTTCCC+CGG | 0.467213 | 4_1:-40354758 | None:intergenic |
| TTTGAGCTCGCTACATATTG+AGG | 0.476279 | 4_1:-40351694 | None:intergenic |
| GGAGCTGCAGCTGGTGTGGT+TGG | 0.478200 | 4_1:-40354206 | None:intergenic |
| CGTTGCTAAGGCACCGGGGA+AGG | 0.485444 | 4_1:+40354745 | Msa0547390:CDS |
| TCGTGATTTCTTCGCTACTA+AGG | 0.488348 | 4_1:+40351903 | Msa0547390:CDS |
| TGATCAAGACCAAAATGATC+AGG | 0.490187 | 4_1:+40352002 | Msa0547390:CDS |
| GTGGTTGGAGCTGGTAGTGT+AGG | 0.493589 | 4_1:-40354191 | None:intergenic |
| AACCCTGTTCAAACAATAGC+TGG | 0.497527 | 4_1:+40351733 | Msa0547390:CDS |
| TTCCTTAACTCTCTTTCCGA+TGG | 0.505029 | 4_1:+40354464 | Msa0547390:CDS |
| GCCTTTGCAGGACTCAAAGC+AGG | 0.505794 | 4_1:+40354440 | Msa0547390:CDS |
| GATGTATCTTTATCGGGTTT+AGG | 0.505916 | 4_1:-40354812 | None:intergenic |
| GAAGGTTCTGGCGCCAAAGA+TGG | 0.511510 | 4_1:-40354770 | None:intergenic |
| ATGATTCAGGTGCTTGTGAA+AGG | 0.511644 | 4_1:-40351333 | None:intergenic |
| GCTCCGGCAAGTGTTCTCAC+AGG | 0.514999 | 4_1:-40354563 | None:intergenic |
| TTTAGGCGCCTTTGCTGTGT+CGG | 0.515537 | 4_1:-40354795 | None:intergenic |
| CCAATAGCTGTGAATTGAGT+TGG | 0.517976 | 4_1:-40354373 | None:intergenic |
| GAAGTGAACACGACAATCAA+TGG | 0.521491 | 4_1:+40354650 | Msa0547390:CDS |
| GGAAGTGTGAACATATCGAC+AGG | 0.523735 | 4_1:+40354626 | Msa0547390:CDS |
| GACCAAAATGATCAGGATCA+AGG | 0.527131 | 4_1:+40352009 | Msa0547390:CDS |
| GTACGAGTTGGAGCCAAAGC+AGG | 0.540425 | 4_1:-40351928 | None:intergenic |
| TGGATTAACAATTCTTGCAC+CGG | 0.540856 | 4_1:+40354409 | Msa0547390:CDS |
| GGTTGTTACTGCTTCCGTTG+TGG | 0.541810 | 4_1:+40351822 | Msa0547390:CDS |
| AGCTGCAGCTCCTAAACCAT+TGG | 0.544279 | 4_1:+40354217 | Msa0547390:CDS |
| AGTTAAGGAACCCTGCTTTG+AGG | 0.547004 | 4_1:-40351624 | None:intergenic |
| CAACAGTGCCTGCTGTGTCA+GGG | 0.548988 | 4_1:-40354274 | None:intergenic |
| GTTGAATCACTAGGTGACTC+TGG | 0.551181 | 4_1:-40354251 | None:intergenic |
| ATCACTAGGTGACTCTGGTA+AGG | 0.555539 | 4_1:-40354246 | None:intergenic |
| GATTCAACCCCTGACACAGC+AGG | 0.558392 | 4_1:+40354266 | Msa0547390:CDS |
| TTAGCAGCAGCAGTACGAGT+TGG | 0.559502 | 4_1:-40351940 | None:intergenic |
| GAACTGAATGTTGTGAGTTA+CGG | 0.564207 | 4_1:+40354602 | Msa0547390:CDS |
| CATCGTCGGAATCCTGAGAA+AGG | 0.569747 | 4_1:+40354298 | Msa0547390:CDS |
| GCAACGGAAAAGAAATCCAT+AGG | 0.570178 | 4_1:-40354728 | None:intergenic |
| TGTTGTGATGTCGTCAGGGA+CGG | 0.571744 | 4_1:-40351458 | None:intergenic |
| GTCTGGTGATTCAGGTAATG+TGG | 0.576222 | 4_1:-40351425 | None:intergenic |
| CTACATATTGAGGTAAGATG+TGG | 0.578300 | 4_1:-40351684 | None:intergenic |
| TGATTCAGGTGCTTGTGAAA+GGG | 0.580955 | 4_1:-40351332 | None:intergenic |
| TACATCATCAGATTCGTCGC+AGG | 0.582113 | 4_1:+40354829 | Msa0547390:CDS |
| GGTTGTATAGGAGCAGTAGC+TGG | 0.582821 | 4_1:-40354170 | None:intergenic |
| TCAAGATTGTGTATGGAAAG+TGG | 0.583724 | 4_1:+40354885 | Msa0547390:CDS |
| TCTGGTGATTCAGGTAATGT+GGG | 0.585032 | 4_1:-40351424 | None:intergenic |
| TATGGAAAGTGGATGTCACT+TGG | 0.586667 | 4_1:+40354896 | Msa0547390:CDS |
| CTAGGTGACTCTGGTAAGGA+AGG | 0.586930 | 4_1:-40354242 | None:intergenic |
| TCCTGCTTTGAGTCCTGCAA+AGG | 0.587782 | 4_1:-40354441 | None:intergenic |
| CTTCCCCGGTGCCTTAGCAA+CGG | 0.588968 | 4_1:-40354744 | None:intergenic |
| AACAGTGCCTGCTGTGTCAG+GGG | 0.592569 | 4_1:-40354273 | None:intergenic |
| AATGGTTTAGGAGCTGCAGC+TGG | 0.597225 | 4_1:-40354215 | None:intergenic |
| TTTAGGAGCTGCAGCTGGTG+TGG | 0.597546 | 4_1:-40354210 | None:intergenic |
| CTCCGGCAAGTGTTCTCACA+GGG | 0.597955 | 4_1:-40354562 | None:intergenic |
| ACAATGTCAGTCTTTCAACC+GGG | 0.598947 | 4_1:+40351800 | Msa0547390:CDS |
| GCAGGCACTGTTGACATCGT+CGG | 0.603537 | 4_1:+40354284 | Msa0547390:CDS |
| TGCCGGAGCTAAACCCGGAA+AGG | 0.606244 | 4_1:+40354577 | Msa0547390:CDS |
| TACCAGCTATTGTTTGAACA+GGG | 0.607680 | 4_1:-40351735 | None:intergenic |
| ACCTTCAACCGACACAGCAA+AGG | 0.610444 | 4_1:+40354787 | Msa0547390:CDS |
| ACACTTGCCGGAGCTAAACC+CGG | 0.612612 | 4_1:+40354572 | Msa0547390:CDS |
| TGCTTGTGAAAGGGATAATG+TGG | 0.613574 | 4_1:-40351323 | None:intergenic |
| ATGCTGAATCGTCTGGCGCG+AGG | 0.616806 | 4_1:-40351594 | None:intergenic |
| TCTGGTAAGGAAGGTACCAA+TGG | 0.617840 | 4_1:-40354233 | None:intergenic |
| CGGAATCCTGAGAAAGGCGA+AGG | 0.622312 | 4_1:+40354304 | Msa0547390:CDS |
| CGGAGCTAAACCCGGAAAGG+TGG | 0.627000 | 4_1:+40354580 | Msa0547390:CDS |
| GTGTCAGGGGTTGAATCACT+AGG | 0.639363 | 4_1:-40354260 | None:intergenic |
| CTGAATGTTGTGAGTTACGG+AGG | 0.642257 | 4_1:+40354605 | Msa0547390:CDS |
| ATACATAGTCTGAAATAACA+TGG | 0.642288 | 4_1:-40354511 | None:intergenic |
| CAATGTCAGTCTTTCAACCG+GGG | 0.675430 | 4_1:+40351801 | Msa0547390:CDS |
| AGTGTACACAACACCCACAA+CGG | 0.678067 | 4_1:-40351836 | None:intergenic |
| CTGGTGATTCAGGTAATGTG+GGG | 0.679078 | 4_1:-40351423 | None:intergenic |
| GGATTGTTGTGATGTCGTCA+GGG | 0.683685 | 4_1:-40351462 | None:intergenic |
| TAGTTGAGATAAACTAGTGG+TGG | 0.696029 | 4_1:-40354144 | None:intergenic |
| AACGGAAGCAGTAACAACCC+CGG | 0.701266 | 4_1:-40351818 | None:intergenic |
| GAAGTGTGAACATATCGACA+GGG | 0.704878 | 4_1:+40354627 | Msa0547390:CDS |
| AAGTGTGAACATATCGACAG+GGG | 0.734548 | 4_1:+40354628 | Msa0547390:CDS |
| TTTCCGTTGCTAAGGCACCG+GGG | 0.751333 | 4_1:+40354741 | Msa0547390:CDS |
| TTAGTAGCGAAGAAATCACG+AGG | 0.758452 | 4_1:-40351901 | None:intergenic |
| TGATAGTTGAGATAAACTAG+TGG | 0.789490 | 4_1:-40354147 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATGTACAAAAAAAT+AGG | + | chr4_1:40353549-40353568 | Msa0547390:intron | 10.0% |
| !!! | TTTTCATTTGAAATTTTCTA+TGG | + | chr4_1:40352184-40352203 | Msa0547390:intron | 15.0% |
| !! | TTGTATAAAAAAGTTTGATT+TGG | + | chr4_1:40352247-40352266 | Msa0547390:intron | 15.0% |
| !! | TTGAATTAACTTATCATAAA+AGG | + | chr4_1:40352532-40352551 | Msa0547390:intron | 15.0% |
| !!! | CATGAATTGATTTAAAAATA+AGG | + | chr4_1:40352928-40352947 | Msa0547390:intron | 15.0% |
| !!! | TGGTAATTGAAAATTTTAAA+GGG | + | chr4_1:40352959-40352978 | Msa0547390:intron | 15.0% |
| !!! | AAGAAGATTTAATATGTTTT+TGG | - | chr4_1:40353046-40353065 | None:intergenic | 15.0% |
| !! | TAGAATAATCTAAGAATATT+TGG | + | chr4_1:40353201-40353220 | Msa0547390:intron | 15.0% |
| !!! | TTTTTGTTAAAGAAAGTTTT+AGG | - | chr4_1:40354054-40354073 | None:intergenic | 15.0% |
| !! | TATACAATAAAAATGACACA+AGG | - | chr4_1:40352234-40352253 | None:intergenic | 20.0% |
| !!! | GATGATACTTCAAATTTTAT+TGG | + | chr4_1:40352269-40352288 | Msa0547390:intron | 20.0% |
| !!! | AAATTTTCAATTACCACTTT+TGG | - | chr4_1:40352955-40352974 | None:intergenic | 20.0% |
| !!! | GTGGTAATTGAAAATTTTAA+AGG | + | chr4_1:40352958-40352977 | Msa0547390:intron | 20.0% |
| !!! | AATTTTAAAGGGACTAAAAA+TGG | + | chr4_1:40352970-40352989 | Msa0547390:intron | 20.0% |
| !!! | TGAAAAGTTGGTATATTTAT+AGG | + | chr4_1:40353018-40353037 | Msa0547390:intron | 20.0% |
| !!! | GAAAAGTTGGTATATTTATA+GGG | + | chr4_1:40353019-40353038 | Msa0547390:intron | 20.0% |
| !!! | TCAAAATCTTTTGTTTAAGT+TGG | - | chr4_1:40353249-40353268 | None:intergenic | 20.0% |
| !!! | TTAAACAAAAGATTTTGAGT+TGG | + | chr4_1:40353251-40353270 | Msa0547390:intron | 20.0% |
| !! | ATAAAAAAAAGAGCAGATTA+TGG | + | chr4_1:40353304-40353323 | Msa0547390:intron | 20.0% |
| !! | AAACATTAATTTATCAAAGC+TGG | - | chr4_1:40353341-40353360 | None:intergenic | 20.0% |
| !!! | TGTGTTTCTTTTTTTCTTTT+TGG | - | chr4_1:40353707-40353726 | None:intergenic | 20.0% |
| !! | ATGATATCATTTATCTGAAA+AGG | - | chr4_1:40353827-40353846 | None:intergenic | 20.0% |
| !!! | TGATTTGCTAACTTAAATTT+TGG | - | chr4_1:40353891-40353910 | None:intergenic | 20.0% |
| !! | AAGTTAGCAAATCATAATTA+AGG | + | chr4_1:40353897-40353916 | Msa0547390:intron | 20.0% |
| !! | AGTTAGCAAATCATAATTAA+GGG | + | chr4_1:40353898-40353917 | Msa0547390:intron | 20.0% |
| !!! | TGTTTTTTTTGGAGATTTTG+GGG | - | chr4_1:40351359-40351378 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTTTGGAGATTTT+GGG | - | chr4_1:40351360-40351379 | None:intergenic | 25.0% |
| !!! | TCATGATTTCTGTTGTTTTT+AGG | - | chr4_1:40351525-40351544 | None:intergenic | 25.0% |
| !!! | GATTTTTTTGTTTTCGTCTA+AGG | - | chr4_1:40351650-40351669 | None:intergenic | 25.0% |
| !! | AGTTAGCTTATAACTTATAG+TGG | + | chr4_1:40352339-40352358 | Msa0547390:intron | 25.0% |
| ! | TTGATTGAATTTGTAGTGTT+TGG | + | chr4_1:40352371-40352390 | Msa0547390:intron | 25.0% |
| ! | GTAGTGTTTGGTAAAATTAA+CGG | + | chr4_1:40352383-40352402 | Msa0547390:intron | 25.0% |
| ! | TAAACCATAATCTCATGATA+AGG | + | chr4_1:40352572-40352591 | Msa0547390:intron | 25.0% |
| ! | ATTACCTTATCATGAGATTA+TGG | - | chr4_1:40352579-40352598 | None:intergenic | 25.0% |
| ! | ATAATCTCATGATAAGGTAA+TGG | + | chr4_1:40352578-40352597 | Msa0547390:intron | 25.0% |
| ! | TTTACTTAAACAACTATGCA+TGG | + | chr4_1:40352720-40352739 | Msa0547390:intron | 25.0% |
| ! | CTTCTTCAATAATAATGCTA+AGG | - | chr4_1:40352762-40352781 | None:intergenic | 25.0% |
| ! | TTAAAAATAAGGACCAAAAG+TGG | + | chr4_1:40352939-40352958 | Msa0547390:intron | 25.0% |
| !! | AAATGGAAGGAAAATTTTAG+AGG | + | chr4_1:40352987-40353006 | Msa0547390:intron | 25.0% |
| !! | AATGGAAGGAAAATTTTAGA+GGG | + | chr4_1:40352988-40353007 | Msa0547390:intron | 25.0% |
| ! | ATATTTGGATGATATGACAA+AGG | + | chr4_1:40353216-40353235 | Msa0547390:intron | 25.0% |
| ! | ACTTGCATTATTCTTATGAT+TGG | - | chr4_1:40353280-40353299 | None:intergenic | 25.0% |
| !!! | TTACCTTTTTTTAAGAGAAG+AGG | + | chr4_1:40353443-40353462 | Msa0547390:intron | 25.0% |
| ! | TTTCCTCTTCTCTTAAAAAA+AGG | - | chr4_1:40353449-40353468 | None:intergenic | 25.0% |
| !! | ATTTTATATGCAGACATCAA+TGG | + | chr4_1:40353597-40353616 | Msa0547390:intron | 25.0% |
| ! | ATATCATTTATCTGAAAAGG+AGG | - | chr4_1:40353824-40353843 | None:intergenic | 25.0% |
| !! | TTAAGGTGTTACATCAATTA+AGG | - | chr4_1:40353854-40353873 | None:intergenic | 25.0% |
| ! | GAATATGACATTTAGGTAAA+AGG | - | chr4_1:40353936-40353955 | None:intergenic | 25.0% |
| !! | CATTGATAATTCTAAGGATT+AGG | - | chr4_1:40353977-40353996 | None:intergenic | 25.0% |
| !! | TTGATGCATTGATAATTCTA+AGG | - | chr4_1:40353983-40354002 | None:intergenic | 25.0% |
| !!! | AGATTGAGTTCTAATCATTT+TGG | - | chr4_1:40354078-40354097 | None:intergenic | 25.0% |
| !! | ATACATAGTCTGAAATAACA+TGG | - | chr4_1:40354514-40354533 | None:intergenic | 25.0% |
| ! | ATAAATAGCAAGACGTTTAT+CGG | - | chr4_1:40354687-40354706 | None:intergenic | 25.0% |
| !! | ATCTGATGATGTATCTTTAT+CGG | - | chr4_1:40354822-40354841 | None:intergenic | 25.0% |
| !!! | GGTGTTTTTTTTGGAGATTT+TGG | - | chr4_1:40351361-40351380 | None:intergenic | 30.0% |
| !!! | TTTCTGTTGTTTTTAGGAGA+CGG | - | chr4_1:40351519-40351538 | None:intergenic | 30.0% |
| AGAAAAATGCAACTTCCAAA+TGG | - | chr4_1:40352127-40352146 | None:intergenic | 30.0% | |
| AAAGCAACAAAAAAGTGACA+TGG | - | chr4_1:40352167-40352186 | None:intergenic | 30.0% | |
| ! | AATGCTTTGATGATACATGT+GGG | - | chr4_1:40352685-40352704 | None:intergenic | 30.0% |
| TTAAACAACTATGCATGGTA+TGG | + | chr4_1:40352725-40352744 | Msa0547390:intron | 30.0% | |
| TTAAAGGGACTAAAAATGGA+AGG | + | chr4_1:40352974-40352993 | Msa0547390:intron | 30.0% | |
| AAAAAAGAGCAGATTATGGT+CGG | + | chr4_1:40353308-40353327 | Msa0547390:intron | 30.0% | |
| ACACATCCATTCATCTAATT+TGG | + | chr4_1:40353736-40353755 | Msa0547390:intron | 30.0% | |
| AAGGAACCAAATTAGATGAA+TGG | - | chr4_1:40353745-40353764 | None:intergenic | 30.0% | |
| AAAGTGAAAGCTTAGTTGTA+AGG | - | chr4_1:40353764-40353783 | None:intergenic | 30.0% | |
| TGGTATCTAGCATGAAATTA+AGG | - | chr4_1:40353871-40353890 | None:intergenic | 30.0% | |
| !! | TTAGGTAAAAGGCTTTGTTA+TGG | - | chr4_1:40353925-40353944 | None:intergenic | 30.0% |
| ! | TAAGGATTAGGCTTTTATAG+AGG | - | chr4_1:40353965-40353984 | None:intergenic | 30.0% |
| TGATATTGAAGTTGTGAAGA+TGG | - | chr4_1:40354031-40354050 | None:intergenic | 30.0% | |
| TGATAGTTGAGATAAACTAG+TGG | - | chr4_1:40354150-40354169 | None:intergenic | 30.0% | |
| !! | CGTCTTGCTATTTATAAAGT+TGG | + | chr4_1:40354692-40354711 | Msa0547390:CDS | 30.0% |
| ! | TCTGATGATGTATCTTTATC+GGG | - | chr4_1:40354821-40354840 | None:intergenic | 30.0% |
| ! | AATGTGGGGACTAATGATTT+TGG | - | chr4_1:40351412-40351431 | None:intergenic | 35.0% |
| CATCACAACAATCCTCAAAA+AGG | + | chr4_1:40351471-40351490 | Msa0547390:CDS | 35.0% | |
| ! | AGAATGTTTTCGCCTTTTTG+AGG | - | chr4_1:40351486-40351505 | None:intergenic | 35.0% |
| !!! | TTGTTTTTAGGAGACGGATT+AGG | - | chr4_1:40351513-40351532 | None:intergenic | 35.0% |
| ! | TGTTTTCGTCTAAGGAGTTA+AGG | - | chr4_1:40351642-40351661 | None:intergenic | 35.0% |
| CTACATATTGAGGTAAGATG+TGG | - | chr4_1:40351687-40351706 | None:intergenic | 35.0% | |
| TACCAGCTATTGTTTGAACA+GGG | - | chr4_1:40351738-40351757 | None:intergenic | 35.0% | |
| TTACCAGCTATTGTTTGAAC+AGG | - | chr4_1:40351739-40351758 | None:intergenic | 35.0% | |
| CCTGATGCATAAACATTAAG+TGG | - | chr4_1:40351778-40351797 | None:intergenic | 35.0% | |
| CCACTTAATGTTTATGCATC+AGG | + | chr4_1:40351775-40351794 | Msa0547390:intron | 35.0% | |
| AACAATGTCAGTCTTTCAAC+CGG | + | chr4_1:40351799-40351818 | Msa0547390:CDS | 35.0% | |
| TTCTCCTTATTAGCAGCTTT+AGG | - | chr4_1:40351970-40351989 | None:intergenic | 35.0% | |
| TGATCAAGACCAAAATGATC+AGG | + | chr4_1:40352002-40352021 | Msa0547390:CDS | 35.0% | |
| ! | TACCTTGATCCTGATCATTT+TGG | - | chr4_1:40352014-40352033 | None:intergenic | 35.0% |
| !! | AATGATGTGGAGTTGATGAA+TGG | + | chr4_1:40352098-40352117 | Msa0547390:intron | 35.0% |
| ! | GTTGATGAATGGTTTCCATT+TGG | + | chr4_1:40352109-40352128 | Msa0547390:intron | 35.0% |
| ATGATACATGTGGGTCTATT+TGG | - | chr4_1:40352676-40352695 | None:intergenic | 35.0% | |
| ! | CAATGCTTTGATGATACATG+TGG | - | chr4_1:40352686-40352705 | None:intergenic | 35.0% |
| GAGGGACTTAAATGAAAAGT+TGG | + | chr4_1:40353006-40353025 | Msa0547390:intron | 35.0% | |
| !! | ATGCGAGTTCTAAAGAAAAG+AGG | + | chr4_1:40353128-40353147 | Msa0547390:intron | 35.0% |
| !! | CTAAAGAAAAGAGGTATCCA+TGG | + | chr4_1:40353137-40353156 | Msa0547390:intron | 35.0% |
| !! | TCAGCTCAAAATAGTGGATT+TGG | - | chr4_1:40353632-40353651 | None:intergenic | 35.0% |
| !! | CCACTATTTTGAGCTGAAAA+CGG | + | chr4_1:40353635-40353654 | Msa0547390:intron | 35.0% |
| !! | TATTTTGAGCTGAAAACGGA+TGG | + | chr4_1:40353639-40353658 | Msa0547390:intron | 35.0% |
| !! | TGTAATGTGTTGCTTTCAGT+TGG | - | chr4_1:40353679-40353698 | None:intergenic | 35.0% |
| TCTGAAAAGGAGGTTATGTT+GGG | - | chr4_1:40353814-40353833 | None:intergenic | 35.0% | |
| ATCTGAAAAGGAGGTTATGT+TGG | - | chr4_1:40353815-40353834 | None:intergenic | 35.0% | |
| GCTTGGAGAATATGACATTT+AGG | - | chr4_1:40353943-40353962 | None:intergenic | 35.0% | |
| ! | ATTAGGCTTTTATAGAGGCT+TGG | - | chr4_1:40353960-40353979 | None:intergenic | 35.0% |
| ATTGAAGTTGTGAAGATGGT+AGG | - | chr4_1:40354027-40354046 | None:intergenic | 35.0% | |
| TAGTTGAGATAAACTAGTGG+TGG | - | chr4_1:40354147-40354166 | None:intergenic | 35.0% | |
| TGGATTAACAATTCTTGCAC+CGG | + | chr4_1:40354409-40354428 | Msa0547390:CDS | 35.0% | |
| GAACTGAATGTTGTGAGTTA+CGG | + | chr4_1:40354602-40354621 | Msa0547390:CDS | 35.0% | |
| GATGTATCTTTATCGGGTTT+AGG | - | chr4_1:40354815-40354834 | None:intergenic | 35.0% | |
| AATCCAACTGAAAACAAGTC+TGG | + | chr4_1:40354857-40354876 | Msa0547390:CDS | 35.0% | |
| TCAAGATTGTGTATGGAAAG+TGG | + | chr4_1:40354885-40354904 | Msa0547390:CDS | 35.0% | |
| TGCTTGTGAAAGGGATAATG+TGG | - | chr4_1:40351326-40351345 | None:intergenic | 40.0% | |
| TGATTCAGGTGCTTGTGAAA+GGG | - | chr4_1:40351335-40351354 | None:intergenic | 40.0% | |
| ATGATTCAGGTGCTTGTGAA+AGG | - | chr4_1:40351336-40351355 | None:intergenic | 40.0% | |
| !! | GGGACTAATGATTTTGGTGA+TGG | - | chr4_1:40351406-40351425 | None:intergenic | 40.0% |
| TCTGGTGATTCAGGTAATGT+GGG | - | chr4_1:40351427-40351446 | None:intergenic | 40.0% | |
| !!! | TTTTAGGAGACGGATTAGGA+CGG | - | chr4_1:40351509-40351528 | None:intergenic | 40.0% |
| CTTGAAAATGCTGAATCGTC+TGG | - | chr4_1:40351604-40351623 | None:intergenic | 40.0% | |
| !! | CATTTTCAAGCCTCAAAGCA+GGG | + | chr4_1:40351614-40351633 | Msa0547390:CDS | 40.0% |
| TTTGAGCTCGCTACATATTG+AGG | - | chr4_1:40351697-40351716 | None:intergenic | 40.0% | |
| AACCCTGTTCAAACAATAGC+TGG | + | chr4_1:40351733-40351752 | Msa0547390:CDS | 40.0% | |
| TAGCTGGTAAAGATCCAACA+AGG | + | chr4_1:40351749-40351768 | Msa0547390:intron | 40.0% | |
| ! | ACATTAAGTGGAAGCCTTGT+TGG | - | chr4_1:40351766-40351785 | None:intergenic | 40.0% |
| ACAATGTCAGTCTTTCAACC+GGG | + | chr4_1:40351800-40351819 | Msa0547390:CDS | 40.0% | |
| CAAGCTCGCGATTTATCATT+TGG | + | chr4_1:40351864-40351883 | Msa0547390:CDS | 40.0% | |
| TTAGTAGCGAAGAAATCACG+AGG | - | chr4_1:40351904-40351923 | None:intergenic | 40.0% | |
| TCGTGATTTCTTCGCTACTA+AGG | + | chr4_1:40351903-40351922 | Msa0547390:CDS | 40.0% | |
| GACCAAAATGATCAGGATCA+AGG | + | chr4_1:40352009-40352028 | Msa0547390:CDS | 40.0% | |
| GATCAGGATCAAGGTAAATC+TGG | + | chr4_1:40352018-40352037 | Msa0547390:intron | 40.0% | |
| GTGAGATTGTGTGGAATTCT+TGG | + | chr4_1:40352045-40352064 | Msa0547390:intron | 40.0% | |
| TGGAATTCTTGGAACAACGT+TGG | + | chr4_1:40352056-40352075 | Msa0547390:intron | 40.0% | |
| TTGTTGCTGTAGCAATGATG+TGG | + | chr4_1:40352085-40352104 | Msa0547390:intron | 40.0% | |
| ! | CCGTTTTCAGCTCAAAATAG+TGG | - | chr4_1:40353638-40353657 | None:intergenic | 40.0% |
| CTGAAAAGGAGGTTATGTTG+GGG | - | chr4_1:40353813-40353832 | None:intergenic | 40.0% | |
| AACTAGTAGTGCAAGTGAGA+AGG | - | chr4_1:40354108-40354127 | None:intergenic | 40.0% | |
| !! | AAGGAAGGTACCAATGGTTT+AGG | - | chr4_1:40354230-40354249 | None:intergenic | 40.0% |
| CCAATAGCTGTGAATTGAGT+TGG | - | chr4_1:40354376-40354395 | None:intergenic | 40.0% | |
| CCAACTCAATTCACAGCTAT+TGG | + | chr4_1:40354373-40354392 | Msa0547390:CDS | 40.0% | |
| CAGCTATTGGCAACAAAAAC+AGG | + | chr4_1:40354386-40354405 | Msa0547390:CDS | 40.0% | |
| CTATTGGCAACAAAAACAGG+TGG | + | chr4_1:40354389-40354408 | Msa0547390:CDS | 40.0% | |
| TTCCTTAACTCTCTTTCCGA+TGG | + | chr4_1:40354464-40354483 | Msa0547390:CDS | 40.0% | |
| AACATTCAGTTCCACCTTTC+CGG | - | chr4_1:40354594-40354613 | None:intergenic | 40.0% | |
| GAAGTGTGAACATATCGACA+GGG | + | chr4_1:40354627-40354646 | Msa0547390:CDS | 40.0% | |
| AAGTGTGAACATATCGACAG+GGG | + | chr4_1:40354628-40354647 | Msa0547390:CDS | 40.0% | |
| GAAGTGAACACGACAATCAA+TGG | + | chr4_1:40354650-40354669 | Msa0547390:CDS | 40.0% | |
| GCAACGGAAAAGAAATCCAT+AGG | - | chr4_1:40354731-40354750 | None:intergenic | 40.0% | |
| ! | GGATTTCTTTTCCGTTGCTA+AGG | + | chr4_1:40354733-40354752 | Msa0547390:CDS | 40.0% |
| GGCTCTATCAAGATTGTGTA+TGG | + | chr4_1:40354878-40354897 | Msa0547390:CDS | 40.0% | |
| TATGGAAAGTGGATGTCACT+TGG | + | chr4_1:40354896-40354915 | Msa0547390:CDS | 40.0% | |
| !! | GGAGATTTTGGGGATGATTC+AGG | - | chr4_1:40351349-40351368 | None:intergenic | 45.0% |
| !!! | TGATGGTGCTGTTGCTTTTG+GGG | - | chr4_1:40351389-40351408 | None:intergenic | 45.0% |
| !!! | GTGATGGTGCTGTTGCTTTT+GGG | - | chr4_1:40351390-40351409 | None:intergenic | 45.0% |
| CTGGTGATTCAGGTAATGTG+GGG | - | chr4_1:40351426-40351445 | None:intergenic | 45.0% | |
| GTCTGGTGATTCAGGTAATG+TGG | - | chr4_1:40351428-40351447 | None:intergenic | 45.0% | |
| TCTGTTGAGTCTGGTGATTC+AGG | - | chr4_1:40351436-40351455 | None:intergenic | 45.0% | |
| GGATTGTTGTGATGTCGTCA+GGG | - | chr4_1:40351465-40351484 | None:intergenic | 45.0% | |
| AGGATTGTTGTGATGTCGTC+AGG | - | chr4_1:40351466-40351485 | None:intergenic | 45.0% | |
| CAGCTCATCACAGCCAAAAA+CGG | + | chr4_1:40351559-40351578 | Msa0547390:CDS | 45.0% | |
| !! | GATTGTTAAGCCGCCGTTTT+TGG | - | chr4_1:40351575-40351594 | None:intergenic | 45.0% |
| !! | GCATTTTCAAGCCTCAAAGC+AGG | + | chr4_1:40351613-40351632 | Msa0547390:CDS | 45.0% |
| AGTTAAGGAACCCTGCTTTG+AGG | - | chr4_1:40351627-40351646 | None:intergenic | 45.0% | |
| CAATGTCAGTCTTTCAACCG+GGG | + | chr4_1:40351801-40351820 | Msa0547390:CDS | 45.0% | |
| GTTGTTACTGCTTCCGTTGT+GGG | + | chr4_1:40351823-40351842 | Msa0547390:CDS | 45.0% | |
| AGTGTACACAACACCCACAA+CGG | - | chr4_1:40351839-40351858 | None:intergenic | 45.0% | |
| GGCTCCTAAAGCTGCTAATA+AGG | + | chr4_1:40351963-40351982 | Msa0547390:CDS | 45.0% | |
| TCGAGATGCGTTGAATACCA+TGG | - | chr4_1:40353157-40353176 | None:intergenic | 45.0% | |
| ! | GCTGGTAGTGTAGGTTGTAT+AGG | - | chr4_1:40354185-40354204 | None:intergenic | 45.0% |
| !! | TCTGGTAAGGAAGGTACCAA+TGG | - | chr4_1:40354236-40354255 | None:intergenic | 45.0% |
| ATCACTAGGTGACTCTGGTA+AGG | - | chr4_1:40354249-40354268 | None:intergenic | 45.0% | |
| GTTGAATCACTAGGTGACTC+TGG | - | chr4_1:40354254-40354273 | None:intergenic | 45.0% | |
| GTCCATCGGAAAGAGAGTTA+AGG | - | chr4_1:40354469-40354488 | None:intergenic | 45.0% | |
| ! | CAACTCGAGCTTTTGTCCAT+CGG | - | chr4_1:40354483-40354502 | None:intergenic | 45.0% |
| ACATTCAGTTCCACCTTTCC+GGG | - | chr4_1:40354593-40354612 | None:intergenic | 45.0% | |
| CTGAATGTTGTGAGTTACGG+AGG | + | chr4_1:40354605-40354624 | Msa0547390:CDS | 45.0% | |
| ! | GGAAGTGTGAACATATCGAC+AGG | + | chr4_1:40354626-40354645 | Msa0547390:CDS | 45.0% |
| ! | TGGCAAAGTGCTTCTTCCTA+TGG | + | chr4_1:40354712-40354731 | Msa0547390:CDS | 45.0% |
| TACATCATCAGATTCGTCGC+AGG | + | chr4_1:40354829-40354848 | Msa0547390:CDS | 45.0% | |
| !! | GAGCCAGACTTGTTTTCAGT+TGG | - | chr4_1:40354863-40354882 | None:intergenic | 45.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | + | chr4_1:40352801-40352820 | Msa0547390:intron | 5.0% |
| !!! | ATAATATACTTTTAATAAAA+TGG | - | chr4_1:40353110-40353129 | None:intergenic | 5.0% |
| !!! | GGGGTAGGGGGTGTTTTTTT+TGG | - | chr4_1:40351370-40351389 | None:intergenic | 50.0% |
| !!! | TGCTGTTGCTTTTGGGGTAG+GGG | - | chr4_1:40351383-40351402 | None:intergenic | 50.0% |
| !!! | GTGCTGTTGCTTTTGGGGTA+GGG | - | chr4_1:40351384-40351403 | None:intergenic | 50.0% |
| !!! | GGTGATGGTGCTGTTGCTTT+TGG | - | chr4_1:40351391-40351410 | None:intergenic | 50.0% |
| TGTTGTGATGTCGTCAGGGA+CGG | - | chr4_1:40351461-40351480 | None:intergenic | 50.0% | |
| CTCATCACAGCCAAAAACGG+CGG | + | chr4_1:40351562-40351581 | Msa0547390:CDS | 50.0% | |
| AACGGAAGCAGTAACAACCC+CGG | - | chr4_1:40351821-40351840 | None:intergenic | 50.0% | |
| GGTTGTTACTGCTTCCGTTG+TGG | + | chr4_1:40351822-40351841 | Msa0547390:CDS | 50.0% | |
| TTAGCAGCAGCAGTACGAGT+TGG | - | chr4_1:40351943-40351962 | None:intergenic | 50.0% | |
| AACTCGTACTGCTGCTGCTA+AGG | + | chr4_1:40351942-40351961 | Msa0547390:CDS | 50.0% | |
| ! | TCTGGAGCAGTGAGATTGTG+TGG | + | chr4_1:40352036-40352055 | Msa0547390:intron | 50.0% |
| GGTTGTATAGGAGCAGTAGC+TGG | - | chr4_1:40354173-40354192 | None:intergenic | 50.0% | |
| AATGGTTTAGGAGCTGCAGC+TGG | - | chr4_1:40354218-40354237 | None:intergenic | 50.0% | |
| AGCTGCAGCTCCTAAACCAT+TGG | + | chr4_1:40354217-40354236 | Msa0547390:CDS | 50.0% | |
| CTAGGTGACTCTGGTAAGGA+AGG | - | chr4_1:40354245-40354264 | None:intergenic | 50.0% | |
| GTGTCAGGGGTTGAATCACT+AGG | - | chr4_1:40354263-40354282 | None:intergenic | 50.0% | |
| CATCGTCGGAATCCTGAGAA+AGG | + | chr4_1:40354298-40354317 | Msa0547390:CDS | 50.0% | |
| TGTATGCCTTCGCCTTTCTC+AGG | - | chr4_1:40354313-40354332 | None:intergenic | 50.0% | |
| ! | TCCTGCTTTGAGTCCTGCAA+AGG | - | chr4_1:40354444-40354463 | None:intergenic | 50.0% |
| AACCCTGTGAGAACACTTGC+CGG | + | chr4_1:40354560-40354579 | Msa0547390:CDS | 50.0% | |
| ! | CTTTTCCGTTGCTAAGGCAC+CGG | + | chr4_1:40354739-40354758 | Msa0547390:CDS | 50.0% |
| !! | TTTTCCGTTGCTAAGGCACC+GGG | + | chr4_1:40354740-40354759 | Msa0547390:CDS | 50.0% |
| ACCTTCAACCGACACAGCAA+AGG | + | chr4_1:40354787-40354806 | Msa0547390:CDS | 50.0% | |
| ! | TTTAGGCGCCTTTGCTGTGT+CGG | - | chr4_1:40354798-40354817 | None:intergenic | 50.0% |
| !!! | GCTGTTGCTTTTGGGGTAGG+GGG | - | chr4_1:40351382-40351401 | None:intergenic | 55.0% |
| !!! | GGTGCTGTTGCTTTTGGGGT+AGG | - | chr4_1:40351385-40351404 | None:intergenic | 55.0% |
| ! | CGCTACTAAGGCACCTGCTT+TGG | + | chr4_1:40351915-40351934 | Msa0547390:CDS | 55.0% |
| ! | GTACGAGTTGGAGCCAAAGC+AGG | - | chr4_1:40351931-40351950 | None:intergenic | 55.0% |
| ! | GTGGTTGGAGCTGGTAGTGT+AGG | - | chr4_1:40354194-40354213 | None:intergenic | 55.0% |
| TTTAGGAGCTGCAGCTGGTG+TGG | - | chr4_1:40354213-40354232 | None:intergenic | 55.0% | |
| GATTCAACCCCTGACACAGC+AGG | + | chr4_1:40354266-40354285 | Msa0547390:CDS | 55.0% | |
| AACAGTGCCTGCTGTGTCAG+GGG | - | chr4_1:40354276-40354295 | None:intergenic | 55.0% | |
| CAACAGTGCCTGCTGTGTCA+GGG | - | chr4_1:40354277-40354296 | None:intergenic | 55.0% | |
| TCAACAGTGCCTGCTGTGTC+AGG | - | chr4_1:40354278-40354297 | None:intergenic | 55.0% | |
| ! | GCAGGCACTGTTGACATCGT+CGG | + | chr4_1:40354284-40354303 | Msa0547390:CDS | 55.0% |
| CGGAATCCTGAGAAAGGCGA+AGG | + | chr4_1:40354304-40354323 | Msa0547390:CDS | 55.0% | |
| GCCTTTGCAGGACTCAAAGC+AGG | + | chr4_1:40354440-40354459 | Msa0547390:CDS | 55.0% | |
| CTCCGGCAAGTGTTCTCACA+GGG | - | chr4_1:40354565-40354584 | None:intergenic | 55.0% | |
| ACACTTGCCGGAGCTAAACC+CGG | + | chr4_1:40354572-40354591 | Msa0547390:CDS | 55.0% | |
| ! | CACCTTTCCGGGTTTAGCTC+CGG | - | chr4_1:40354582-40354601 | None:intergenic | 55.0% |
| !! | TTTCCGTTGCTAAGGCACCG+GGG | + | chr4_1:40354741-40354760 | Msa0547390:CDS | 55.0% |
| ! | GAAGGTTCTGGCGCCAAAGA+TGG | - | chr4_1:40354773-40354792 | None:intergenic | 55.0% |
| !! | GCTGTGTCGGTTGAAGGTTC+TGG | - | chr4_1:40354785-40354804 | None:intergenic | 55.0% |
| !! | GCCTTTGCTGTGTCGGTTGA+AGG | - | chr4_1:40354791-40354810 | None:intergenic | 55.0% |
| GGGACGGAGTCTGTTGAGTC+TGG | - | chr4_1:40351445-40351464 | None:intergenic | 60.0% | |
| ATGCTGAATCGTCTGGCGCG+AGG | - | chr4_1:40351597-40351616 | None:intergenic | 60.0% | |
| !! | CCTGCAAAGGCGCTGTCATC+CGG | - | chr4_1:40354431-40354450 | None:intergenic | 60.0% |
| GCTCCGGCAAGTGTTCTCAC+AGG | - | chr4_1:40354566-40354585 | None:intergenic | 60.0% | |
| TGCCGGAGCTAAACCCGGAA+AGG | + | chr4_1:40354577-40354596 | Msa0547390:CDS | 60.0% | |
| CGGAGCTAAACCCGGAAAGG+TGG | + | chr4_1:40354580-40354599 | Msa0547390:CDS | 60.0% | |
| CTTCCCCGGTGCCTTAGCAA+CGG | - | chr4_1:40354747-40354766 | None:intergenic | 60.0% | |
| !! | ACCGGGGAAGGCACCATCTT+TGG | + | chr4_1:40354757-40354776 | Msa0547390:CDS | 60.0% |
| GCCAAAGATGGTGCCTTCCC+CGG | - | chr4_1:40354761-40354780 | None:intergenic | 60.0% | |
| GCAGCTGGTGTGGTTGGAGC+TGG | - | chr4_1:40354203-40354222 | None:intergenic | 65.0% | |
| GGAGCTGCAGCTGGTGTGGT+TGG | - | chr4_1:40354209-40354228 | None:intergenic | 65.0% | |
| CCGGATGACAGCGCCTTTGC+AGG | + | chr4_1:40354428-40354447 | Msa0547390:CDS | 65.0% | |
| !! | CGTTGCTAAGGCACCGGGGA+AGG | + | chr4_1:40354745-40354764 | Msa0547390:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 40351271 | 40354955 | 40351271 | ID=Msa0547390;Name=Msa0547390 |
| chr4_1 | mRNA | 40351271 | 40354955 | 40351271 | ID=Msa0547390-mRNA-1;Parent=Msa0547390;Name=Msa0547390-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0|0|4|0|509 |
| chr4_1 | exon | 40351271 | 40351517 | 40351271 | ID=Msa0547390-mRNA-1:exon:10335;Parent=Msa0547390-mRNA-1 |
| chr4_1 | exon | 40351536 | 40351754 | 40351536 | ID=Msa0547390-mRNA-1:exon:10336;Parent=Msa0547390-mRNA-1 |
| chr4_1 | exon | 40351797 | 40352030 | 40351797 | ID=Msa0547390-mRNA-1:exon:10337;Parent=Msa0547390-mRNA-1 |
| chr4_1 | exon | 40354126 | 40354955 | 40354126 | ID=Msa0547390-mRNA-1:exon:10338;Parent=Msa0547390-mRNA-1 |
| chr4_1 | CDS | 40351271 | 40351517 | 40351271 | ID=Msa0547390-mRNA-1:cds;Parent=Msa0547390-mRNA-1 |
| chr4_1 | CDS | 40351536 | 40351754 | 40351536 | ID=Msa0547390-mRNA-1:cds;Parent=Msa0547390-mRNA-1 |
| chr4_1 | CDS | 40351797 | 40352030 | 40351797 | ID=Msa0547390-mRNA-1:cds;Parent=Msa0547390-mRNA-1 |
| chr4_1 | CDS | 40354126 | 40354955 | 40354126 | ID=Msa0547390-mRNA-1:cds;Parent=Msa0547390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
