AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0898760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0898760 MtrunA17_Chr6g0484471 84.052 232 1 1 1 196 1 232 5.94e-139 387
Msa0898760 MtrunA17_Chr4g0029711 77.155 232 17 1 1 196 1 232 4.19e-131 367
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0898760 AT1G56450.1 70.044 227 32 1 6 196 20 246 3.63e-116 330

Find 77 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCTCATGGCTGCTGATA+TGG 0.179124 6_1:-93286784 Msa0898760:CDS
TGTTCTTGGTGGTGTTAAAA+AGG 0.203874 6_1:-93285290 Msa0898760:CDS
TTGTGGAACTCACTTGTTCT+TGG 0.291580 6_1:-93285304 Msa0898760:CDS
GTCTGCTGTGAACAAGATTC+AGG 0.323330 6_1:-93284997 Msa0898760:intron
CATCCCACATGTTGTCAATA+AGG 0.327041 6_1:+93285407 None:intergenic
GTGGGATGATGGGAACTCTT+TGG 0.337980 6_1:-93285392 Msa0898760:CDS
CTTATCCAGGTTAGCATGAT+TGG 0.338514 6_1:-93285170 Msa0898760:intron
CATTCTCTTTGAAAACATAC+TGG 0.339670 6_1:-93283347 Msa0898760:CDS
GAGCTTTGGTTCCTCACAAC+CGG 0.340556 6_1:-93283006 Msa0898760:three_prime_UTR
TTCCACTCATCGCGGAGAAT+TGG 0.357012 6_1:+93285092 None:intergenic
TAACTCGGGTGATGTATAAT+AGG 0.358277 6_1:-93285345 Msa0898760:CDS
GAAGACAACCATGTGGCAAC+TGG 0.364317 6_1:-93285137 Msa0898760:CDS
TGGGATGATGGGAACTCTTT+GGG 0.367264 6_1:-93285391 Msa0898760:CDS
AACTAATTCACAGGTTCATA+TGG 0.374338 6_1:-93286353 Msa0898760:intron
AATAAGTATTTAGATATTTG+AGG 0.394345 6_1:-93289438 Msa0898760:five_prime_UTR
AAATAGTTGTGGACCTCCTT+AGG 0.402257 6_1:+93285367 None:intergenic
TTAGGTTAAGAAAGAAGAAA+AGG 0.410073 6_1:+93289316 None:intergenic
CATAACTATTCAGTGTTGTA+TGG 0.420718 6_1:-93283226 Msa0898760:three_prime_UTR
AACCATGTGGCAACTGGGCT+TGG 0.423568 6_1:-93285131 Msa0898760:CDS
AGAATACATACAGAGTTCTC+TGG 0.424755 6_1:+93286973 None:intergenic
GAAAACATACTGGGAGTTCT+CGG 0.436500 6_1:-93283337 Msa0898760:CDS
ATTCTCATGGCTGCTGATAT+GGG 0.437064 6_1:-93286783 Msa0898760:CDS
ATCACGAACTCTCCGATTCA+AGG 0.441934 6_1:-93289260 Msa0898760:intron
CAGTTGGTGCTGAAGGTTCA+TGG 0.451533 6_1:-93283299 Msa0898760:CDS
ACCAACTGTTGGATTCTTGA+AGG 0.455188 6_1:+93283314 None:intergenic
TGGAACTCACTTGTTCTTGG+TGG 0.462785 6_1:-93285301 Msa0898760:CDS
TTGAAATTAGCCATGAGCTT+TGG 0.469862 6_1:-93283020 Msa0898760:three_prime_UTR
AGCTTTGGTTCCTCACAACC+GGG 0.478329 6_1:-93283005 Msa0898760:three_prime_UTR
TGGGAACTCTTTGGGACCTA+AGG 0.494345 6_1:-93285383 Msa0898760:CDS
AGAAGAAGAATACCTTGAAT+CGG 0.494854 6_1:+93289248 None:intergenic
ATTGACAACATGTGGGATGA+TGG 0.498069 6_1:-93285403 Msa0898760:CDS
TGAATCCTTCGTCGTTGTGA+TGG 0.519215 6_1:-93287012 Msa0898760:exon
ATATCTAAAATTACCGAAGA+AGG 0.520773 6_1:-93283387 Msa0898760:CDS
GAAAACTTGACATTTGAAGA+AGG 0.522330 6_1:-93285068 Msa0898760:CDS
AATCCAACAGTTGGTGCTGA+AGG 0.522601 6_1:-93283306 Msa0898760:CDS
GTAAACAGTAGCACCTTCTT+CGG 0.525664 6_1:+93283374 None:intergenic
GAACCTTCAGCACCAACTGT+TGG 0.532387 6_1:+93283303 None:intergenic
GTTGCTATCAAATACAAAGA+TGG 0.535140 6_1:-93286807 Msa0898760:CDS
ACAACACTGAATAGTTATGT+TGG 0.542715 6_1:+93283230 None:intergenic
ACGGAGGATCCAGTTACGTA+TGG 0.544818 6_1:+93286831 None:intergenic
AAGTCATCATGTCTTAAGCC+AGG 0.553114 6_1:+93282975 None:intergenic
GGCCAATTCTCCGCGATGAG+TGG 0.562260 6_1:-93285094 Msa0898760:CDS
GAATACATACAGAGTTCTCT+GGG 0.564352 6_1:+93286974 None:intergenic
GCCTTCAAGAATCCAACAGT+TGG 0.564781 6_1:-93283315 Msa0898760:CDS
TTTGCATTTGAAGTCAATGA+GGG 0.570386 6_1:-93283051 Msa0898760:three_prime_UTR
TTGACAACATGTGGGATGAT+GGG 0.571070 6_1:-93285402 Msa0898760:CDS
ATACAAAGATGGCATTCTCA+TGG 0.571569 6_1:-93286796 Msa0898760:CDS
TTCCAAGCCCAGTTGCCACA+TGG 0.580626 6_1:+93285129 None:intergenic
GCAGCCTTATTGACAACATG+TGG 0.586058 6_1:-93285411 Msa0898760:intron
AGGTCCACAACTATTTAACT+CGG 0.589584 6_1:-93285360 Msa0898760:CDS
TTGTGAGGAACCAAAGCTCA+TGG 0.592214 6_1:+93283010 None:intergenic
GTTTGCATTTGAAGTCAATG+AGG 0.593669 6_1:-93283052 Msa0898760:three_prime_UTR
AAGACAACCATGTGGCAACT+GGG 0.606831 6_1:-93285136 Msa0898760:CDS
GAACTCTTTGGGACCTAAGG+AGG 0.607188 6_1:-93285380 Msa0898760:CDS
GGCTTGGAAATCATCTTGCT+AGG 0.608634 6_1:-93285115 Msa0898760:CDS
ATTCTCTTTGAAAACATACT+GGG 0.610546 6_1:-93283346 Msa0898760:CDS
TTTGTATTTGATAGCAACGA+CGG 0.611101 6_1:+93286812 None:intergenic
TGTTCACAGCAGACCTATCA+CGG 0.621004 6_1:+93285006 None:intergenic
GCTTTGGTTCCTCACAACCG+GGG 0.622631 6_1:-93283004 Msa0898760:three_prime_UTR
CTTTGGTTCCTCACAACCGG+GGG 0.624825 6_1:-93283003 Msa0898760:three_prime_UTR
CTTAAGCCAGGATCCACCCC+CGG 0.626817 6_1:+93282987 None:intergenic
AAAAGGAATAAAGATGACAA+AGG 0.631944 6_1:+93289333 None:intergenic
TCACCCGAGTTAAATAGTTG+TGG 0.633695 6_1:+93285356 None:intergenic
CGGAGGATCCAGTTACGTAT+GGG 0.635103 6_1:+93286832 None:intergenic
CTCATGGCTGCTGATATGGG+AGG 0.637244 6_1:-93286780 Msa0898760:intron
AAGTAAGGCATACCGTGCCA+AGG 0.647059 6_1:+93285257 None:intergenic
GGTCCACAACTATTTAACTC+GGG 0.657570 6_1:-93285359 Msa0898760:CDS
TTGCATTTGAAGTCAATGAG+GGG 0.661509 6_1:-93283050 Msa0898760:three_prime_UTR
GGGGCAGAAGTACCTTGGCA+CGG 0.670563 6_1:-93285269 Msa0898760:intron
AGAACAAGTGAGTTCCACAA+TGG 0.678967 6_1:+93285307 None:intergenic
AGTGTCCATCACAACGACGA+AGG 0.686041 6_1:+93287007 None:intergenic
CAGCCTTATTGACAACATGT+GGG 0.687070 6_1:-93285410 Msa0898760:CDS
TGTATGGATATGAAATGACT+AGG 0.691920 6_1:-93283210 Msa0898760:three_prime_UTR
GCAACAAGTTCAATCCATTG+TGG 0.696663 6_1:-93285321 Msa0898760:CDS
GTATTTGATAGCAACGACGG+AGG 0.702152 6_1:+93286815 None:intergenic
TAATTACGAAGACAACCATG+TGG 0.788585 6_1:-93285144 Msa0898760:CDS
GTTCATATGGATCTACACTG+AGG 0.793582 6_1:-93286340 Msa0898760:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAATAATATAATTA+AGG - chr6_1:93286215-93286234 Msa0898760:intron 0.0%
!!! TTTTAAAATAATATAATTAA+GGG - chr6_1:93286216-93286235 Msa0898760:intron 0.0%
!!! ATATCTAAATACTTATTTTT+TGG + chr6_1:93282975-93282994 None:intergenic 10.0%
!!! TAAGTAAATTTTTTTTTGTA+GGG + chr6_1:93286319-93286338 None:intergenic 10.0%
!!! ATAAGTAAATTTTTTTTTGT+AGG + chr6_1:93286320-93286339 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr6_1:93286381-93286400 None:intergenic 10.0%
!! AATAAGTATTTAGATATTTG+AGG - chr6_1:93282978-93282997 Msa0898760:three_prime_UTR 15.0%
!!! TTTTCATATAGGTTTATTTA+TGG - chr6_1:93283010-93283029 Msa0898760:three_prime_UTR 15.0%
!!! TTTATGGTTTTATTTTAGAT+CGG - chr6_1:93283026-93283045 Msa0898760:three_prime_UTR 15.0%
!! TACGAAAATAAAATAACTTA+TGG + chr6_1:93284071-93284090 None:intergenic 15.0%
!!! ATAAAATACATTTGAAATGA+AGG + chr6_1:93285826-93285845 None:intergenic 15.0%
!! AAAGCTATTAAAATTAAGTA+AGG + chr6_1:93286290-93286309 None:intergenic 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr6_1:93286352-93286371 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr6_1:93286353-93286372 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr6_1:93286512-93286531 Msa0898760:intron 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG - chr6_1:93286547-93286566 Msa0898760:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr6_1:93286631-93286650 Msa0898760:intron 15.0%
!! AATGCTATTAAAATTATGTA+AGG - chr6_1:93286703-93286722 Msa0898760:intron 15.0%
!!! TTTATGAATATTTTTCCTTT+GGG + chr6_1:93287635-93287654 None:intergenic 15.0%
!!! ATTTATGAATATTTTTCCTT+TGG + chr6_1:93287636-93287655 None:intergenic 15.0%
!! TTGAAAGATAATGTAAAATA+TGG + chr6_1:93287668-93287687 None:intergenic 15.0%
!! CAAAATTAATTAAATATGGA+AGG + chr6_1:93288020-93288039 None:intergenic 15.0%
!!! CTTCCATATTTAATTAATTT+TGG - chr6_1:93288018-93288037 Msa0898760:intron 15.0%
!!! AAAGTGTTTATGATTTTGTT+AGG + chr6_1:93283121-93283140 None:intergenic 20.0%
!! ATAATCAAAACATTTGCAAT+TGG + chr6_1:93283440-93283459 None:intergenic 20.0%
!! TTCATTAAGAATATCAATTC+CGG + chr6_1:93283769-93283788 None:intergenic 20.0%
!!! AAGTTTGAAATTTATGTCTA+GGG - chr6_1:93283791-93283810 Msa0898760:intron 20.0%
!! ATTAAAGCTGATAGAAATTT+AGG - chr6_1:93283964-93283983 Msa0898760:intron 20.0%
!! TTAAAGCTGATAGAAATTTA+GGG - chr6_1:93283965-93283984 Msa0898760:intron 20.0%
!!! AATTTTTTCCTTTATTTGCA+AGG - chr6_1:93284791-93284810 Msa0898760:intron 20.0%
!!! ATTTTTTCCTTTATTTGCAA+GGG - chr6_1:93284792-93284811 Msa0898760:intron 20.0%
!!! TTCTATTTAAGTTTGATGAA+TGG - chr6_1:93284816-93284835 Msa0898760:intron 20.0%
!! TGTTTCATTTATATATAACC+CGG - chr6_1:93284960-93284979 Msa0898760:intron 20.0%
!!! AATTTTTATTTCACATCCTT+AGG - chr6_1:93285367-93285386 Msa0898760:CDS 20.0%
!! AGAACATTAATAATTGAAGA+GGG + chr6_1:93285479-93285498 None:intergenic 20.0%
!! AAGAACATTAATAATTGAAG+AGG + chr6_1:93285480-93285499 None:intergenic 20.0%
!!! CTTTTTTCTTAAAAAGTTAC+AGG + chr6_1:93285891-93285910 None:intergenic 20.0%
!!! TTAAGGGTTAAATATGTTTT+TGG - chr6_1:93286232-93286251 Msa0898760:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG + chr6_1:93286601-93286620 None:intergenic 20.0%
!!! TATAGGGTTAATTATGTTTT+TGG + chr6_1:93286761-93286780 None:intergenic 20.0%
!! TCAAATAAGTGAAGTAAAAA+TGG - chr6_1:93286817-93286836 Msa0898760:CDS 20.0%
!! CAAATAAGTGAAGTAAAAAT+GGG - chr6_1:93286818-93286837 Msa0898760:CDS 20.0%
!!! TGTTTGAAATGTAGATAAAT+AGG + chr6_1:93286891-93286910 None:intergenic 20.0%
!!! GTTGTAATATTTAAAGTCAA+GGG + chr6_1:93286942-93286961 None:intergenic 20.0%
!!! TGATTATTTTGGATTATGAA+TGG - chr6_1:93287704-93287723 Msa0898760:intron 20.0%
!! TTCTAACCAAAAAATTAATG+TGG + chr6_1:93287817-93287836 None:intergenic 20.0%
!! TTTATACATTAAGAATTGTG+TGG - chr6_1:93287853-93287872 Msa0898760:intron 20.0%
!! ATTAATTAAATATGGAAGGA+AGG + chr6_1:93288016-93288035 None:intergenic 20.0%
!! CAGCCAAAATTAATTAAATA+TGG + chr6_1:93288024-93288043 None:intergenic 20.0%
!!! CATATTTAATTAATTTTGGC+TGG - chr6_1:93288022-93288041 Msa0898760:intron 20.0%
!!! AAAGTTATTTGAGATAGAAA+GGG - chr6_1:93288278-93288297 Msa0898760:intron 20.0%
!! AGTAAATTCAGGATTTATAT+AGG - chr6_1:93288308-93288327 Msa0898760:intron 20.0%
!!! ATTTATATAGGTTGATTTGT+CGG - chr6_1:93288320-93288339 Msa0898760:intron 20.0%
!! AGAAAACATATATAGAATGA+AGG + chr6_1:93288433-93288452 None:intergenic 20.0%
!!! ATGAAATTGAAACTTTTACA+CGG + chr6_1:93288766-93288785 None:intergenic 20.0%
!! ACAAATCATCATTAAGTTTA+GGG + chr6_1:93288899-93288918 None:intergenic 20.0%
!! AACAAATCATCATTAAGTTT+AGG + chr6_1:93288900-93288919 None:intergenic 20.0%
!!! AAATGAAACAGAATTTTACA+TGG - chr6_1:93289160-93289179 Msa0898760:intron 20.0%
!!! TACTTATTTTTTGGTGTGTT+TGG + chr6_1:93282966-93282985 None:intergenic 25.0%
!!! GGTTTTCGATTTTTTCATAT+AGG - chr6_1:93282999-93283018 Msa0898760:three_prime_UTR 25.0%
!!! GGACTTTTTTTTTATTAACG+AGG + chr6_1:93283065-93283084 None:intergenic 25.0%
! AAAAGGAATAAAGATGACAA+AGG + chr6_1:93283086-93283105 None:intergenic 25.0%
! TTAGGTTAAGAAAGAAGAAA+AGG + chr6_1:93283103-93283122 None:intergenic 25.0%
!! TTTTTGTGTTTTCTCATGTT+AGG - chr6_1:93283396-93283415 Msa0898760:intron 25.0%
!! TTTTGTGTTTTCTCATGTTA+GGG - chr6_1:93283397-93283416 Msa0898760:intron 25.0%
!!! GTTATCGATTTTTCATATGA+AGG - chr6_1:93283464-93283483 Msa0898760:intron 25.0%
! TCCAATGTAGATTATGAAAA+TGG + chr6_1:93283636-93283655 None:intergenic 25.0%
! TATGAACATTCTGTATTCAT+AGG - chr6_1:93283686-93283705 Msa0898760:intron 25.0%
! TCATTAAGAATATCAATTCC+GGG + chr6_1:93283768-93283787 None:intergenic 25.0%
!! CAAGTTTGAAATTTATGTCT+AGG - chr6_1:93283790-93283809 Msa0898760:intron 25.0%
! TTTCATTCTAAACTACTGAT+CGG - chr6_1:93283814-93283833 Msa0898760:intron 25.0%
!! TTGTGATCAAAAGAATGTTT+TGG - chr6_1:93283908-93283927 Msa0898760:intron 25.0%
!! TGTGATCAAAAGAATGTTTT+GGG - chr6_1:93283909-93283928 Msa0898760:intron 25.0%
! ATATAATGACATAAGCTGTT+TGG - chr6_1:93284015-93284034 Msa0898760:intron 25.0%
! TATAATGACATAAGCTGTTT+GGG - chr6_1:93284016-93284035 Msa0898760:intron 25.0%
!! TTATACATAAGTGCTTTGTT+TGG - chr6_1:93284176-93284195 Msa0898760:intron 25.0%
!!! TATACATAAGTGCTTTGTTT+GGG - chr6_1:93284177-93284196 Msa0898760:intron 25.0%
!!! AAACTATAAGCTGTTTTCAT+AGG + chr6_1:93284277-93284296 None:intergenic 25.0%
! AATTGTATATAGTGTCTGTT+TGG - chr6_1:93284399-93284418 Msa0898760:intron 25.0%
! ACTTATTTGAACTTATCTAC+TGG - chr6_1:93284426-93284445 Msa0898760:intron 25.0%
!!! GCTGTTTTTATAAGCTATAT+TGG + chr6_1:93284524-93284543 None:intergenic 25.0%
!!! ATGATAATTATGGGCTTTTT+TGG + chr6_1:93284639-93284658 None:intergenic 25.0%
!!! TGTGTAGTTTTAAGTATGAT+TGG - chr6_1:93284664-93284683 Msa0898760:intron 25.0%
!!! GTGTAGTTTTAAGTATGATT+GGG - chr6_1:93284665-93284684 Msa0898760:intron 25.0%
!!! TGTAGTTTTAAGTATGATTG+GGG - chr6_1:93284666-93284685 Msa0898760:intron 25.0%
!!! GTTTTGTTTCATTGTTTCAT+TGG - chr6_1:93284838-93284857 Msa0898760:intron 25.0%
! TTATCATTTGTTTGCTTTGA+TGG - chr6_1:93284922-93284941 Msa0898760:intron 25.0%
! TACATTACGTGTTAACTATA+AGG - chr6_1:93285024-93285043 Msa0898760:CDS 25.0%
!!! TTTTTTCCTCTGTTAAAACA+TGG - chr6_1:93285064-93285083 Msa0898760:CDS 25.0%
!!! ATTAAACCATGTTTTAACAG+AGG + chr6_1:93285073-93285092 None:intergenic 25.0%
! AAAGAAAAAAAAGGAAAGGT+TGG + chr6_1:93285225-93285244 None:intergenic 25.0%
! CAAGAAAGAAAAAAAAGGAA+AGG + chr6_1:93285229-93285248 None:intergenic 25.0%
!!! CTTTCCTTTTTTTTCTTTCT+TGG - chr6_1:93285227-93285246 Msa0898760:intron 25.0%
! GGATGTGAAATAAAAATTCA+GGG + chr6_1:93285365-93285384 None:intergenic 25.0%
! AGGATGTGAAATAAAAATTC+AGG + chr6_1:93285366-93285385 None:intergenic 25.0%
!!! GTTCTTTTGATTCAAGTTTA+AGG - chr6_1:93285494-93285513 Msa0898760:intron 25.0%
! TATTATCTTTCCTTCTATTG+TGG - chr6_1:93285787-93285806 Msa0898760:intron 25.0%
!! TTTTCTTAAAAAGTTACAGG+AGG + chr6_1:93285888-93285907 None:intergenic 25.0%
!!! ATAAATGTTGTTTCCTTACA+AGG - chr6_1:93285921-93285940 Msa0898760:intron 25.0%
!!! TAAATGTTGTTTCCTTACAA+GGG - chr6_1:93285922-93285941 Msa0898760:intron 25.0%
! TTCTATCCATCAATTATCAT+TGG + chr6_1:93286041-93286060 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr6_1:93286577-93286596 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr6_1:93286642-93286661 Msa0898760:intron 25.0%
! AATGGGTGTGATTAATTAAA+TGG - chr6_1:93286835-93286854 Msa0898760:CDS 25.0%
! AAACACAACAAACAAAAATC+AGG + chr6_1:93287220-93287239 None:intergenic 25.0%
! AACTTCGATAAGTTGTAAAT+GGG + chr6_1:93287502-93287521 None:intergenic 25.0%
! AAACTTCGATAAGTTGTAAA+TGG + chr6_1:93287503-93287522 None:intergenic 25.0%
!!! TGCTCAAGTTTTGATTATTT+TGG - chr6_1:93287693-93287712 Msa0898760:intron 25.0%
! TTGAAGTGAAATCATTTGTA+TGG - chr6_1:93287876-93287895 Msa0898760:intron 25.0%
! AAAGAAGTAAAAACTGAACA+GGG - chr6_1:93288233-93288252 Msa0898760:intron 25.0%
!! GAAAGTTATTTGAGATAGAA+AGG - chr6_1:93288277-93288296 Msa0898760:intron 25.0%
!! AATACAATCTCCTTTTAGAT+AGG - chr6_1:93288470-93288489 Msa0898760:intron 25.0%
! TTAGTATTCCAAATCATTCA+TGG + chr6_1:93288544-93288563 None:intergenic 25.0%
! GTGTAAAAGTTTCAATTTCA+TGG - chr6_1:93288765-93288784 Msa0898760:intron 25.0%
!! ATATCTAAAATTACCGAAGA+AGG - chr6_1:93289029-93289048 Msa0898760:intron 25.0%
!! ATTCTCTTTGAAAACATACT+GGG - chr6_1:93289070-93289089 Msa0898760:intron 25.0%
!!! ATTTTGAAGTTAAATGAGAC+TGG - chr6_1:93289230-93289249 Msa0898760:intron 25.0%
!! ATTTTCAGTAACATTCATCA+TGG - chr6_1:93289318-93289337 Msa0898760:five_prime_UTR 25.0%
! TGCAAACAATTCAAGAAAAA+AGG + chr6_1:93289351-93289370 None:intergenic 25.0%
AGAAGAAGAATACCTTGAAT+CGG + chr6_1:93283171-93283190 None:intergenic 30.0%
GTTTATCAGGAATTACGAAA+AGG + chr6_1:93283243-93283262 None:intergenic 30.0%
GGATGTTATACTAAGAATGA+GGG + chr6_1:93283265-93283284 None:intergenic 30.0%
TGGATGTTATACTAAGAATG+AGG + chr6_1:93283266-93283285 None:intergenic 30.0%
!! AATCGTTTTTCAATTTACCC+AGG - chr6_1:93283366-93283385 Msa0898760:CDS 30.0%
!! ATCGTTTTTCAATTTACCCA+GGG - chr6_1:93283367-93283386 Msa0898760:CDS 30.0%
TTTCATATGAAGGTTCTGTT+TGG - chr6_1:93283474-93283493 Msa0898760:intron 30.0%
!! GCCATTTTCATAATCTACAT+TGG - chr6_1:93283632-93283651 Msa0898760:intron 30.0%
AAGCATTTCTTAAGACTGTT+TGG + chr6_1:93283717-93283736 None:intergenic 30.0%
ACAGTCTTAAGAAATGCTTA+TGG - chr6_1:93283718-93283737 Msa0898760:intron 30.0%
! CTATTTGAGTTTATCTACTG+CGG + chr6_1:93283744-93283763 None:intergenic 30.0%
CCATTAGATAAGCTCAAATA+GGG + chr6_1:93283877-93283896 None:intergenic 30.0%
!! TCAAAAGAATGTTTTGGGTA+TGG - chr6_1:93283914-93283933 Msa0898760:intron 30.0%
TTCCATTCTAAATCACTGAT+AGG - chr6_1:93283937-93283956 Msa0898760:intron 30.0%
TTCCTATCAGTGATTTAGAA+TGG + chr6_1:93283942-93283961 None:intergenic 30.0%
! ATAGAAATTTAGGGTCTGTT+TGG - chr6_1:93283974-93283993 Msa0898760:intron 30.0%
! CCAGAATTTTACATCACAAA+GGG + chr6_1:93284326-93284345 None:intergenic 30.0%
! TCCAGAATTTTACATCACAA+AGG + chr6_1:93284327-93284346 None:intergenic 30.0%
! AGTTCTGCCTCTAAAAAATT+AGG + chr6_1:93284452-93284471 None:intergenic 30.0%
CACACACACATGATAATTAT+GGG + chr6_1:93284648-93284667 None:intergenic 30.0%
ACACACACACATGATAATTA+TGG + chr6_1:93284649-93284668 None:intergenic 30.0%
ATAGAATCCCTTGCAAATAA+AGG + chr6_1:93284802-93284821 None:intergenic 30.0%
! TTGTTTCATTGGACTTTTGT+TGG - chr6_1:93284849-93284868 Msa0898760:intron 30.0%
! TGTTTCATTGGACTTTTGTT+GGG - chr6_1:93284850-93284869 Msa0898760:intron 30.0%
GCATCCAAGAAAGAAAAAAA+AGG + chr6_1:93285234-93285253 None:intergenic 30.0%
CAACTAATTATGAGTACCTA+AGG + chr6_1:93285386-93285405 None:intergenic 30.0%
ACATTAATAATTGAAGAGGG+AGG + chr6_1:93285476-93285495 None:intergenic 30.0%
!! TTGCTTATTTTCTTTGCTCT+AGG - chr6_1:93285559-93285578 Msa0898760:intron 30.0%
! TTTGTATTTGATAGCAACGA+CGG + chr6_1:93285607-93285626 None:intergenic 30.0%
GTTGCTATCAAATACAAAGA+TGG - chr6_1:93285609-93285628 Msa0898760:intron 30.0%
TAAAAGAGTGAACAAGAAGA+AGG + chr6_1:93285747-93285766 None:intergenic 30.0%
! TGTTCACTCTTTTACTTTGT+TGG - chr6_1:93285753-93285772 Msa0898760:intron 30.0%
CAAAATCTAACCACAATAGA+AGG + chr6_1:93285800-93285819 None:intergenic 30.0%
GTAATGCCAATGATAATTGA+TGG - chr6_1:93286032-93286051 Msa0898760:intron 30.0%
GATAGAATGAACTAATTCAC+AGG - chr6_1:93286054-93286073 Msa0898760:intron 30.0%
AACTAATTCACAGGTTCATA+TGG - chr6_1:93286063-93286082 Msa0898760:intron 30.0%
! TAGAAGGTCGCAATTTTATA+GGG + chr6_1:93286259-93286278 None:intergenic 30.0%
! TTAGAAGGTCGCAATTTTAT+AGG + chr6_1:93286260-93286279 None:intergenic 30.0%
AAGTAAGGACTAAACTTAGA+AGG + chr6_1:93286275-93286294 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG - chr6_1:93286550-93286569 Msa0898760:intron 30.0%
ATGTAAGGACTAAACTTACA+AGG - chr6_1:93286718-93286737 Msa0898760:intron 30.0%
AACAAGTAAAATGAAGCTGA+TGG + chr6_1:93286865-93286884 None:intergenic 30.0%
ACAACAAACAAAAATCAGGT+AGG + chr6_1:93287216-93287235 None:intergenic 30.0%
GAAAACTTGACATTTGAAGA+AGG - chr6_1:93287348-93287367 Msa0898760:intron 30.0%
ACTTCGATAAGTTGTAAATG+GGG + chr6_1:93287501-93287520 None:intergenic 30.0%
GTTCTATATATAGCTGATAG+TGG - chr6_1:93287586-93287605 Msa0898760:intron 30.0%
!!! AGGAAGCCACATTAATTTTT+TGG - chr6_1:93287808-93287827 Msa0898760:intron 30.0%
ATTAAATATGGAAGGAAGGT+AGG + chr6_1:93288012-93288031 None:intergenic 30.0%
!!! TCCTTTATTTTCTGCTACTA+AGG + chr6_1:93288104-93288123 None:intergenic 30.0%
!! AATTTTGACATTTACTCTCG+TGG + chr6_1:93288175-93288194 None:intergenic 30.0%
ACGAGAGTAAATGTCAAAAT+TGG - chr6_1:93288174-93288193 Msa0898760:intron 30.0%
CGAGAGTAAATGTCAAAATT+GGG - chr6_1:93288175-93288194 Msa0898760:intron 30.0%
GAGAGTAAATGTCAAAATTG+GGG - chr6_1:93288176-93288195 Msa0898760:intron 30.0%
! CTGTTCAGTTTTTACTTCTT+TGG + chr6_1:93288234-93288253 None:intergenic 30.0%
CAAAGAAGTAAAAACTGAAC+AGG - chr6_1:93288232-93288251 Msa0898760:intron 30.0%
AAGAAGTAAAAACTGAACAG+GGG - chr6_1:93288234-93288253 Msa0898760:intron 30.0%
AGGGAGAAAATAGTAAATTC+AGG - chr6_1:93288297-93288316 Msa0898760:intron 30.0%
!! TGGATTTGCTTTCATTTTTC+TGG - chr6_1:93288353-93288372 Msa0898760:intron 30.0%
TAGGAAAGTTCCTATCTAAA+AGG + chr6_1:93288483-93288502 None:intergenic 30.0%
TCTGATCATGTATATGTGTT+AGG - chr6_1:93288720-93288739 Msa0898760:intron 30.0%
! ATTTGTTGAATATGTTGCGT+CGG - chr6_1:93288850-93288869 Msa0898760:intron 30.0%
! ATGTTTTCAAAGAGAATGGT+GGG + chr6_1:93289067-93289086 None:intergenic 30.0%
! TATGTTTTCAAAGAGAATGG+TGG + chr6_1:93289068-93289087 None:intergenic 30.0%
! CAGTATGTTTTCAAAGAGAA+TGG + chr6_1:93289071-93289090 None:intergenic 30.0%
! CATTCTCTTTGAAAACATAC+TGG - chr6_1:93289069-93289088 Msa0898760:intron 30.0%
ACAACACTGAATAGTTATGT+TGG + chr6_1:93289189-93289208 None:intergenic 30.0%
CATAACTATTCAGTGTTGTA+TGG - chr6_1:93289190-93289209 Msa0898760:intron 30.0%
TGTATGGATATGAAATGACT+AGG - chr6_1:93289206-93289225 Msa0898760:intron 30.0%
! TTTGCATTTGAAGTCAATGA+GGG - chr6_1:93289365-93289384 Msa0898760:five_prime_UTR 30.0%
TCAGGAATTACGAAAAGGAA+GGG + chr6_1:93283238-93283257 None:intergenic 35.0%
ATCAGGAATTACGAAAAGGA+AGG + chr6_1:93283239-93283258 None:intergenic 35.0%
ACTAAGAATGAGGGTTTATC+AGG + chr6_1:93283256-93283275 None:intergenic 35.0%
GTGAATCGAAGAGATAGAAT+TGG + chr6_1:93283286-93283305 None:intergenic 35.0%
! TTTTCAATTTACCCAGGGTT+AGG - chr6_1:93283372-93283391 Msa0898760:CDS 35.0%
AACACAAAAAACCTAACCCT+GGG + chr6_1:93283386-93283405 None:intergenic 35.0%
AAACACAAAAAACCTAACCC+TGG + chr6_1:93283387-93283406 None:intergenic 35.0%
CGCAGTAGATAAACTCAAAT+AGG - chr6_1:93283742-93283761 Msa0898760:intron 35.0%
TAGATAAACTCAAATAGGCC+CGG - chr6_1:93283747-93283766 Msa0898760:intron 35.0%
CCCTATTTGAGCTTATCTAA+TGG - chr6_1:93283874-93283893 Msa0898760:intron 35.0%
GCCATTAGATAAGCTCAAAT+AGG + chr6_1:93283878-93283897 None:intergenic 35.0%
! AATTTAGGGTCTGTTTGGAT+TGG - chr6_1:93283979-93283998 Msa0898760:intron 35.0%
AGCTTATGAAAACAGCTAAC+AGG - chr6_1:93284104-93284123 Msa0898760:intron 35.0%
CCCTTTGTGATGTAAAATTC+TGG - chr6_1:93284323-93284342 Msa0898760:intron 35.0%
!!! CTACTGGCCTAATTTTTTAG+AGG - chr6_1:93284442-93284461 Msa0898760:intron 35.0%
TAAGCTTATGCATAAGCTGT+AGG - chr6_1:93284605-93284624 Msa0898760:intron 35.0%
CTAGCACAATACAAACAAGA+AGG + chr6_1:93284694-93284713 None:intergenic 35.0%
CATTGTGCATAAAATCCTAG+GGG + chr6_1:93284722-93284741 None:intergenic 35.0%
GCATTGTGCATAAAATCCTA+GGG + chr6_1:93284723-93284742 None:intergenic 35.0%
TGCATTGTGCATAAAATCCT+AGG + chr6_1:93284724-93284743 None:intergenic 35.0%
! GTTTCATTGGACTTTTGTTG+GGG - chr6_1:93284851-93284870 Msa0898760:intron 35.0%
AAGATTTGAGTCATACATGC+CGG + chr6_1:93284982-93285001 None:intergenic 35.0%
!!! AGTGATTGTCATTTTTCCCA+TGG - chr6_1:93285101-93285120 Msa0898760:CDS 35.0%
GAATACATACAGAGTTCTCT+GGG + chr6_1:93285445-93285464 None:intergenic 35.0%
AGAATACATACAGAGTTCTC+TGG + chr6_1:93285446-93285465 None:intergenic 35.0%
ATACAAAGATGGCATTCTCA+TGG - chr6_1:93285620-93285639 Msa0898760:intron 35.0%
TTAAAAAGTTACAGGAGGAC+TGG + chr6_1:93285883-93285902 None:intergenic 35.0%
!! CAGAAGAAAAGCACTAAAAC+TGG + chr6_1:93285948-93285967 None:intergenic 35.0%
TTACTCACATGAGTTCATCA+AGG + chr6_1:93286194-93286213 None:intergenic 35.0%
! CAAGTTTAGAACACTATGAC+AGG - chr6_1:93286415-93286434 Msa0898760:intron 35.0%
!!! TGAGTGCAGAGATTTTTTGT+AGG - chr6_1:93286673-93286692 Msa0898760:intron 35.0%
!!! GAGTGCAGAGATTTTTTGTA+GGG - chr6_1:93286674-93286693 Msa0898760:intron 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - chr6_1:93286733-93286752 Msa0898760:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - chr6_1:93286734-93286753 Msa0898760:intron 35.0%
AGGTCCACAACTATTTAACT+CGG - chr6_1:93287056-93287075 Msa0898760:intron 35.0%
TAACTCGGGTGATGTATAAT+AGG - chr6_1:93287071-93287090 Msa0898760:intron 35.0%
!! TGTTCTTGGTGGTGTTAAAA+AGG - chr6_1:93287126-93287145 Msa0898760:intron 35.0%
!! GTTCTTGGTGGTGTTAAAAA+GGG - chr6_1:93287127-93287146 Msa0898760:intron 35.0%
!! TTCTTGGTGGTGTTAAAAAG+GGG - chr6_1:93287128-93287147 Msa0898760:intron 35.0%
CTGAATGACAAGACAAAGTA+AGG + chr6_1:93287177-93287196 None:intergenic 35.0%
TGTGTTTGTGTATCTTATCC+AGG - chr6_1:93287233-93287252 Msa0898760:intron 35.0%
TAATTACGAAGACAACCATG+TGG - chr6_1:93287272-93287291 Msa0898760:intron 35.0%
ATAAGTTGTAAATGGGGAGA+GGG + chr6_1:93287495-93287514 None:intergenic 35.0%
ATTGACCACCTAAGAAATGA+AGG - chr6_1:93288073-93288092 Msa0898760:intron 35.0%
GCCTTAGTAGCAGAAAATAA+AGG - chr6_1:93288100-93288119 Msa0898760:intron 35.0%
TCAAATAACTTTCCCTCCAT+GGG + chr6_1:93288270-93288289 None:intergenic 35.0%
GCTTACTACCATGAATGATT+TGG - chr6_1:93288533-93288552 Msa0898760:intron 35.0%
TCTGTGTAACATCAATACAC+TGG - chr6_1:93288566-93288585 Msa0898760:intron 35.0%
TTGCTTATGACCCAATTAAG+CGG - chr6_1:93288606-93288625 Msa0898760:intron 35.0%
AGGTAATAACACCTAGATGA+TGG - chr6_1:93288661-93288680 Msa0898760:intron 35.0%
TTTGTTGAATATGTTGCGTC+GGG - chr6_1:93288851-93288870 Msa0898760:intron 35.0%
!! TGATGATTTGTTTCGTTCGT+TGG - chr6_1:93288908-93288927 Msa0898760:intron 35.0%
! GTTTGCATTTGAAGTCAATG+AGG - chr6_1:93289364-93289383 Msa0898760:five_prime_UTR 35.0%
! TTGCATTTGAAGTCAATGAG+GGG - chr6_1:93289366-93289385 Msa0898760:five_prime_UTR 35.0%
TTGAAATTAGCCATGAGCTT+TGG - chr6_1:93289396-93289415 Msa0898760:five_prime_UTR 35.0%
TGCAGCTTATTTCACAAACG+TGG - chr6_1:93283512-93283531 Msa0898760:intron 40.0%
!! GCTGTTTTCATAGGCTATCT+TGG + chr6_1:93284268-93284287 None:intergenic 40.0%
AGATTTGAGTCATACATGCC+GGG + chr6_1:93284981-93285000 None:intergenic 40.0%
TGTGCGTTACAACATACCAT+GGG + chr6_1:93285120-93285139 None:intergenic 40.0%
GATGCAATACCCTTTGCAAA+CGG - chr6_1:93285249-93285268 Msa0898760:intron 40.0%
TGTGTGTTTCCGTTTGCAAA+GGG + chr6_1:93285261-93285280 None:intergenic 40.0%
TTGTGTGTTTCCGTTTGCAA+AGG + chr6_1:93285262-93285281 None:intergenic 40.0%
TAATTGAAGAGGGAGGAAGA+GGG + chr6_1:93285469-93285488 None:intergenic 40.0%
ATAATTGAAGAGGGAGGAAG+AGG + chr6_1:93285470-93285489 None:intergenic 40.0%
ATTCTCATGGCTGCTGATAT+GGG - chr6_1:93285633-93285652 Msa0898760:intron 40.0%
AGTTAACAGAGAGAGAGCTA+TGG + chr6_1:93285695-93285714 None:intergenic 40.0%
GTTCATATGGATCTACACTG+AGG - chr6_1:93286076-93286095 Msa0898760:intron 40.0%
TGGGGAAATAAGTGACTTTC+AGG - chr6_1:93286155-93286174 Msa0898760:intron 40.0%
ACATGTTGTCAATAAGGCTG+CGG + chr6_1:93287006-93287025 None:intergenic 40.0%
!! CAGCCTTATTGACAACATGT+GGG - chr6_1:93287006-93287025 Msa0898760:exon 40.0%
CATCCCACATGTTGTCAATA+AGG + chr6_1:93287012-93287031 None:intergenic 40.0%
ATTGACAACATGTGGGATGA+TGG - chr6_1:93287013-93287032 Msa0898760:exon 40.0%
TTGACAACATGTGGGATGAT+GGG - chr6_1:93287014-93287033 Msa0898760:exon 40.0%
AAATAGTTGTGGACCTCCTT+AGG + chr6_1:93287052-93287071 None:intergenic 40.0%
GGTCCACAACTATTTAACTC+GGG - chr6_1:93287057-93287076 Msa0898760:intron 40.0%
TCACCCGAGTTAAATAGTTG+TGG + chr6_1:93287063-93287082 None:intergenic 40.0%
GCAACAAGTTCAATCCATTG+TGG - chr6_1:93287095-93287114 Msa0898760:intron 40.0%
AGAACAAGTGAGTTCCACAA+TGG + chr6_1:93287112-93287131 None:intergenic 40.0%
TTGTGGAACTCACTTGTTCT+TGG - chr6_1:93287112-93287131 Msa0898760:intron 40.0%
CTTATCCAGGTTAGCATGAT+TGG - chr6_1:93287246-93287265 Msa0898760:intron 40.0%
! AGTTTTCATTCCACTCATCG+CGG + chr6_1:93287335-93287354 None:intergenic 40.0%
ACGCAGCAAGAAAATGAAAC+AGG + chr6_1:93287450-93287469 None:intergenic 40.0%
GATAAGTTGTAAATGGGGAG+AGG + chr6_1:93287496-93287515 None:intergenic 40.0%
TGTACATGCTGTCACTGTTA+AGG - chr6_1:93287788-93287807 Msa0898760:intron 40.0%
AGGTAACATGTGATGTGAGT+TGG + chr6_1:93287935-93287954 None:intergenic 40.0%
CCTCATAACTCTGGACTTAA+GGG + chr6_1:93287983-93288002 None:intergenic 40.0%
TCCTCATAACTCTGGACTTA+AGG + chr6_1:93287984-93288003 None:intergenic 40.0%
AGGAAACATCCTCATAACTC+TGG + chr6_1:93287992-93288011 None:intergenic 40.0%
! TGTCAAAATTGGGGCTTTGA+AGG - chr6_1:93288185-93288204 Msa0898760:intron 40.0%
AAGTAAAAACTGAACAGGGG+TGG - chr6_1:93288237-93288256 Msa0898760:intron 40.0%
AGTAAAAACTGAACAGGGGT+GGG - chr6_1:93288238-93288257 Msa0898760:intron 40.0%
CTCAAATAACTTTCCCTCCA+TGG + chr6_1:93288271-93288290 None:intergenic 40.0%
!! TATAGGTTGATTTGTCGGCA+TGG - chr6_1:93288325-93288344 Msa0898760:intron 40.0%
!! ATAGGTTGATTTGTCGGCAT+GGG - chr6_1:93288326-93288345 Msa0898760:intron 40.0%
CTTTCCTATCATAGAGCCAT+TGG - chr6_1:93288495-93288514 Msa0898760:intron 40.0%
! CAAACCAATGGCTCTATGAT+AGG + chr6_1:93288502-93288521 None:intergenic 40.0%
!! ATCATAGAGCCATTGGTTTG+TGG - chr6_1:93288502-93288521 Msa0898760:intron 40.0%
AGAACTGTCTCGTAATTCAC+AGG + chr6_1:93288694-93288713 None:intergenic 40.0%
GTAAACAGTAGCACCTTCTT+CGG + chr6_1:93289045-93289064 None:intergenic 40.0%
GAAAACATACTGGGAGTTCT+CGG - chr6_1:93289079-93289098 Msa0898760:intron 40.0%
ACCAACTGTTGGATTCTTGA+AGG + chr6_1:93289105-93289124 None:intergenic 40.0%
AAGTCATCATGTCTTAAGCC+AGG + chr6_1:93289444-93289463 None:intergenic 40.0%
ATCACGAACTCTCCGATTCA+AGG - chr6_1:93283156-93283175 Msa0898760:three_prime_UTR 45.0%
! TGGACTTTTGTTGGGGTTAC+AGG - chr6_1:93284858-93284877 Msa0898760:intron 45.0%
! GGACTTTTGTTGGGGTTACA+GGG - chr6_1:93284859-93284878 Msa0898760:intron 45.0%
CTGTGCGTTACAACATACCA+TGG + chr6_1:93285121-93285140 None:intergenic 45.0%
TGAATCCTTCGTCGTTGTGA+TGG - chr6_1:93285404-93285423 Msa0898760:CDS 45.0%
TCTAGGTACCCATACGTAAC+TGG - chr6_1:93285576-93285595 Msa0898760:intron 45.0%
! GTATTTGATAGCAACGACGG+AGG + chr6_1:93285604-93285623 None:intergenic 45.0%
CATTCTCATGGCTGCTGATA+TGG - chr6_1:93285632-93285651 Msa0898760:intron 45.0%
CACTAAAACTGGCCCTTGTA+AGG + chr6_1:93285937-93285956 None:intergenic 45.0%
! GTTGAGCGTTTGAAGCCTAT+TGG - chr6_1:93286108-93286127 Msa0898760:intron 45.0%
!! AGAAGGGAGTGCTTTCCAAT+AGG + chr6_1:93286126-93286145 None:intergenic 45.0%
!! ATTGGAAAGCACTCCCTTCT+TGG - chr6_1:93286126-93286145 Msa0898760:intron 45.0%
TCAAGGGTGAAATGCACAGA+AGG + chr6_1:93286926-93286945 None:intergenic 45.0%
!! GCAGCCTTATTGACAACATG+TGG - chr6_1:93287005-93287024 Msa0898760:exon 45.0%
!! TGGGATGATGGGAACTCTTT+GGG - chr6_1:93287025-93287044 Msa0898760:five_prime_UTR 45.0%
TGGAACTCACTTGTTCTTGG+TGG - chr6_1:93287115-93287134 Msa0898760:intron 45.0%
!! AAAAAGGGGCAGAAGTACCT+TGG - chr6_1:93287142-93287161 Msa0898760:intron 45.0%
TAACGCCAATCATGCTAACC+TGG + chr6_1:93287254-93287273 None:intergenic 45.0%
AAGACAACCATGTGGCAACT+GGG - chr6_1:93287280-93287299 Msa0898760:intron 45.0%
GGCTTGGAAATCATCTTGCT+AGG - chr6_1:93287301-93287320 Msa0898760:intron 45.0%
! GAGTGCTTTTGTACCGTGAT+AGG - chr6_1:93287397-93287416 Msa0898760:intron 45.0%
TGTTCACAGCAGACCTATCA+CGG + chr6_1:93287413-93287432 None:intergenic 45.0%
GTCTGCTGTGAACAAGATTC+AGG - chr6_1:93287419-93287438 Msa0898760:intron 45.0%
TGGGCATGCTAGTTGATCAA+AGG + chr6_1:93287616-93287635 None:intergenic 45.0%
TGATCAACTAGCATGCCCAA+AGG - chr6_1:93287617-93287636 Msa0898760:intron 45.0%
CTCTGGACTTAAGGGTCATA+AGG + chr6_1:93287975-93287994 None:intergenic 45.0%
CCCTTAAGTCCAGAGTTATG+AGG - chr6_1:93287980-93287999 Msa0898760:intron 45.0%
CACAGCCTTCATTTCTTAGG+TGG + chr6_1:93288081-93288100 None:intergenic 45.0%
AGGCACAGCCTTCATTTCTT+AGG + chr6_1:93288084-93288103 None:intergenic 45.0%
ACAAACAAAACTCTCAGCCG+AGG + chr6_1:93288409-93288428 None:intergenic 45.0%
CTAGTGCAACCACAAACCAA+TGG + chr6_1:93288514-93288533 None:intergenic 45.0%
! GATTTTGCGGCCGCTTAATT+GGG + chr6_1:93288619-93288638 None:intergenic 45.0%
! AGATTTTGCGGCCGCTTAAT+TGG + chr6_1:93288620-93288639 None:intergenic 45.0%
AATTAAGCGGCCGCAAAATC+TGG - chr6_1:93288619-93288638 Msa0898760:intron 45.0%
! TAGCCACTGACCAGATTTTG+CGG + chr6_1:93288632-93288651 None:intergenic 45.0%
GCCTTCAAGAATCCAACAGT+TGG - chr6_1:93289101-93289120 Msa0898760:intron 45.0%
!! AATCCAACAGTTGGTGCTGA+AGG - chr6_1:93289110-93289129 Msa0898760:intron 45.0%
TTGTGAGGAACCAAAGCTCA+TGG + chr6_1:93289409-93289428 None:intergenic 45.0%
!! GAAATTAATTATTAATTATA+GGG + chr6_1:93286777-93286796 None:intergenic 5.0%
!! TGAAATTAATTATTAATTAT+AGG + chr6_1:93286778-93286797 None:intergenic 5.0%
GAGAGAGAGAAGAGAGAGAG+AGG + chr6_1:93283195-93283214 None:intergenic 50.0%
ATTGTGCTAGAACAGCCCCT+AGG - chr6_1:93284704-93284723 Msa0898760:intron 50.0%
AGTGTCCATCACAACGACGA+AGG + chr6_1:93285412-93285431 None:intergenic 50.0%
CGGAGGATCCAGTTACGTAT+GGG + chr6_1:93285587-93285606 None:intergenic 50.0%
ACGGAGGATCCAGTTACGTA+TGG + chr6_1:93285588-93285607 None:intergenic 50.0%
!! ACTCCCTTCTTGGTGCTAGT+GGG - chr6_1:93286136-93286155 Msa0898760:intron 50.0%
TTCCCCACTAGCACCAAGAA+GGG + chr6_1:93286142-93286161 None:intergenic 50.0%
TTTCCCCACTAGCACCAAGA+AGG + chr6_1:93286143-93286162 None:intergenic 50.0%
!! GTGGGATGATGGGAACTCTT+TGG - chr6_1:93287024-93287043 Msa0898760:five_prime_UTR 50.0%
!! TGGGAACTCTTTGGGACCTA+AGG - chr6_1:93287033-93287052 Msa0898760:intron 50.0%
!! GAACTCTTTGGGACCTAAGG+AGG - chr6_1:93287036-93287055 Msa0898760:intron 50.0%
AAGTAAGGCATACCGTGCCA+AGG + chr6_1:93287162-93287181 None:intergenic 50.0%
GTCATTCAGTCCGACAGTTG+AGG - chr6_1:93287188-93287207 Msa0898760:intron 50.0%
CAGGTAGGTACCTCAACTGT+CGG + chr6_1:93287201-93287220 None:intergenic 50.0%
GAAGACAACCATGTGGCAAC+TGG - chr6_1:93287279-93287298 Msa0898760:intron 50.0%
TTCCACTCATCGCGGAGAAT+TGG + chr6_1:93287327-93287346 None:intergenic 50.0%
AGTTGTAAATGGGGAGAGGG+AGG + chr6_1:93287492-93287511 None:intergenic 50.0%
AGGATGTCGCGTTCAGATCT+AGG + chr6_1:93287955-93287974 None:intergenic 50.0%
! TCTGGTCAGTGGCTAGTTAC+TGG - chr6_1:93288637-93288656 Msa0898760:intron 50.0%
! GTCAGTGGCTAGTTACTGGA+AGG - chr6_1:93288641-93288660 Msa0898760:intron 50.0%
CAGGCAAGCAACCATCATCT+AGG + chr6_1:93288675-93288694 None:intergenic 50.0%
CACGGATGCTGAACAAGATG+AGG + chr6_1:93288748-93288767 None:intergenic 50.0%
! TTAAGTTTAGGGCGCAGTGC+AGG + chr6_1:93288888-93288907 None:intergenic 50.0%
GAACCTTCAGCACCAACTGT+TGG + chr6_1:93289116-93289135 None:intergenic 50.0%
!! CAGTTGGTGCTGAAGGTTCA+TGG - chr6_1:93289117-93289136 Msa0898760:intron 50.0%
! GAGCTTTGGTTCCTCACAAC+CGG - chr6_1:93289410-93289429 Msa0898760:five_prime_UTR 50.0%
! AGCTTTGGTTCCTCACAACC+GGG - chr6_1:93289411-93289430 Msa0898760:five_prime_UTR 50.0%
CTCATGGCTGCTGATATGGG+AGG - chr6_1:93285636-93285655 Msa0898760:intron 55.0%
!! CACTCCCTTCTTGGTGCTAG+TGG - chr6_1:93286135-93286154 Msa0898760:intron 55.0%
!! CTCCCTTCTTGGTGCTAGTG+GGG - chr6_1:93286137-93286156 Msa0898760:intron 55.0%
AACCATGTGGCAACTGGGCT+TGG - chr6_1:93287285-93287304 Msa0898760:intron 55.0%
TTCCAAGCCCAGTTGCCACA+TGG + chr6_1:93287290-93287309 None:intergenic 55.0%
GATTTGTCGGCATGGGAGTC+TGG - chr6_1:93288333-93288352 Msa0898760:intron 55.0%
! CACGCCAGACTGTTTCTCCT+CGG - chr6_1:93288389-93288408 Msa0898760:intron 55.0%
TCAGCCGAGGAGAAACAGTC+TGG + chr6_1:93288396-93288415 None:intergenic 55.0%
! GCTTTGGTTCCTCACAACCG+GGG - chr6_1:93289412-93289431 Msa0898760:five_prime_UTR 55.0%
! CTTTGGTTCCTCACAACCGG+GGG - chr6_1:93289413-93289432 Msa0898760:five_prime_UTR 55.0%
!! GGGGCAGAAGTACCTTGGCA+CGG - chr6_1:93287147-93287166 Msa0898760:intron 60.0%
GGCCAATTCTCCGCGATGAG+TGG - chr6_1:93287322-93287341 Msa0898760:intron 60.0%
CGAGGAGAAACAGTCTGGCG+TGG + chr6_1:93288391-93288410 None:intergenic 60.0%
CGGCCGCAAAATCTGGTCAG+TGG - chr6_1:93288626-93288645 Msa0898760:intron 60.0%
CTTAAGCCAGGATCCACCCC+CGG + chr6_1:93289432-93289451 None:intergenic 60.0%
! GGTGGGCTTGCACCCATGGA+GGG - chr6_1:93288255-93288274 Msa0898760:intron 65.0%
TGGTTCCTCACAACCGGGGG+TGG - chr6_1:93289416-93289435 Msa0898760:five_prime_UTR 65.0%
AGGATCCACCCCCGGTTGTG+AGG + chr6_1:93289424-93289443 None:intergenic 65.0%
TCACAACCGGGGGTGGATCC+TGG - chr6_1:93289423-93289442 Msa0898760:five_prime_UTR 65.0%
! CAGGGGTGGGCTTGCACCCA+TGG - chr6_1:93288251-93288270 Msa0898760:intron 70.0%
! GGGTGGGCTTGCACCCATGG+AGG - chr6_1:93288254-93288273 Msa0898760:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 93282962 93289476 93282962 ID=Msa0898760;Name=Msa0898760
chr6_1 mRNA 93282962 93289476 93282962 ID=Msa0898760-mRNA-1;Parent=Msa0898760;Name=Msa0898760-mRNA-1;_AED=0.16;_eAED=0.16;_QI=250|0.83|0.85|1|0.83|0.71|7|334|196
chr6_1 exon 93282962 93283409 93282962 ID=Msa0898760-mRNA-1:exon:15855;Parent=Msa0898760-mRNA-1
chr6_1 exon 93284998 93285183 93284998 ID=Msa0898760-mRNA-1:exon:15854;Parent=Msa0898760-mRNA-1
chr6_1 exon 93285270 93285429 93285270 ID=Msa0898760-mRNA-1:exon:15853;Parent=Msa0898760-mRNA-1
chr6_1 exon 93286341 93286362 93286341 ID=Msa0898760-mRNA-1:exon:15852;Parent=Msa0898760-mRNA-1
chr6_1 exon 93286781 93286857 93286781 ID=Msa0898760-mRNA-1:exon:15851;Parent=Msa0898760-mRNA-1
chr6_1 exon 93286984 93287049 93286984 ID=Msa0898760-mRNA-1:exon:15850;Parent=Msa0898760-mRNA-1
chr6_1 exon 93289261 93289476 93289261 ID=Msa0898760-mRNA-1:exon:15849;Parent=Msa0898760-mRNA-1
chr6_1 five_prime_UTR 93289261 93289476 93289261 ID=Msa0898760-mRNA-1:five_prime_utr;Parent=Msa0898760-mRNA-1
chr6_1 five_prime_UTR 93287016 93287049 93287016 ID=Msa0898760-mRNA-1:five_prime_utr;Parent=Msa0898760-mRNA-1
chr6_1 CDS 93286984 93287015 93286984 ID=Msa0898760-mRNA-1:cds;Parent=Msa0898760-mRNA-1
chr6_1 CDS 93286781 93286857 93286781 ID=Msa0898760-mRNA-1:cds;Parent=Msa0898760-mRNA-1
chr6_1 CDS 93286341 93286362 93286341 ID=Msa0898760-mRNA-1:cds;Parent=Msa0898760-mRNA-1
chr6_1 CDS 93285270 93285429 93285270 ID=Msa0898760-mRNA-1:cds;Parent=Msa0898760-mRNA-1
chr6_1 CDS 93284998 93285183 93284998 ID=Msa0898760-mRNA-1:cds;Parent=Msa0898760-mRNA-1
chr6_1 CDS 93283296 93283409 93283296 ID=Msa0898760-mRNA-1:cds;Parent=Msa0898760-mRNA-1
chr6_1 three_prime_UTR 93282962 93283295 93282962 ID=Msa0898760-mRNA-1:three_prime_utr;Parent=Msa0898760-mRNA-1
Gene Sequence

>Msa0898760

ATGGACACTGTAACTGAATCCCAGAGAACTCTGTACCCATACGTAACTGGATCCTCCGTCGTTGCTATCAAATACAAAGATGGCATTCTCATGGCTGCTGATATGGGAGGTTCATATGGATCTACACTGAGCCTTATTGACAACATGTGGGATGATGGGAACTCTTTGGGACCTAAGGAGGTCCACAACTATTTAACTCGGGTGATGTATAATAGGCGCAACAAGTTCAATCCATTGTGGAACTCACTTGTTCTTGGTGGTGTTAAAAAGGGGCAGAAGTACCTTGGCACGGTTAGCATGATTGGCGTTAATTACGAAGACAACCATGTGGCAACTGGGCTTGGAAATCATCTTGCTAGGCCAATTCTCCGCGATGAGTGGAATGAAAACTTGACATTTGAAGAAGGTGTCAAGTTACTCGAAAAATGCATGCGAGTGCTTTTGTACCGTGATAGGTCTGCTGTGAACAAGATTCAGATATCTAAAATTACCGAAGAAGGTGCTACTGTTTACCCACCATTCTCTTTGAAAACATACTGGGAGTTCTCGGCCTTCAAGAATCCAACAGTTGGTGCTGAAGGTTCATGGTAG

Protein sequence

>Msa0898760

MDTVTESQRTLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLSLIDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNSLVLGGVKKGQKYLGTVSMIGVNYEDNHVATGLGNHLARPILRDEWNENLTFEEGVKLLEKCMRVLLYRDRSAVNKIQISKITEEGATVYPPFSLKTYWEFSAFKNPTVGAEGSW*