AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001380 MtrunA17_Chr3g0145681 89.924 397 19 6 6 395 3 385 0.0 649
Msa0001380 MtrunA17_Chr1g0211071 47.887 426 165 16 9 394 12 420 1.84e-106 320
Msa0001380 MtrunA17_Chr8g0381111 27.155 232 145 9 111 332 204 421 3.76e-11 64.7
Msa0001380 MtrunA17_Chr8g0381141 27.155 232 145 9 111 332 145 362 7.43e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001380 AT4G35110.1 31.450 407 228 16 9 395 11 386 7.04e-38 141
Msa0001380 AT4G35110.2 31.450 407 228 16 9 395 11 386 7.04e-38 141
Msa0001380 AT4G35110.6 31.450 407 228 16 9 395 11 386 7.04e-38 141
Msa0001380 AT4G35110.5 31.450 407 228 16 9 395 11 386 7.04e-38 141
Msa0001380 AT4G35110.3 31.450 407 228 16 9 395 26 401 7.27e-38 141
Msa0001380 AT4G35110.4 31.450 407 228 16 9 395 23 398 7.95e-38 141
Msa0001380 AT2G16900.5 39.521 167 94 2 206 371 196 356 7.72e-34 130
Msa0001380 AT2G16900.6 39.521 167 94 2 206 371 196 356 7.72e-34 130
Msa0001380 AT2G16900.1 39.521 167 94 2 206 371 196 356 7.72e-34 130
Msa0001380 AT2G16900.3 39.521 167 94 2 206 371 107 267 1.15e-33 127
Msa0001380 AT2G16900.4 39.521 167 94 2 206 371 107 267 1.15e-33 127
Msa0001380 AT2G16900.2 39.521 167 94 2 206 371 107 267 1.15e-33 127
Msa0001380 AT2G16900.7 39.521 167 94 2 206 371 107 267 1.15e-33 127
Msa0001380 AT2G20960.1 32.432 185 121 3 211 394 557 738 3.51e-28 117
Msa0001380 AT2G20960.4 32.432 185 121 3 211 394 557 738 3.51e-28 117
Msa0001380 AT4G38550.3 33.333 168 111 1 205 371 416 583 3.81e-28 116
Msa0001380 AT4G38550.1 33.333 168 111 1 205 371 416 583 3.81e-28 116
Msa0001380 AT4G38550.5 33.333 168 111 1 205 371 315 482 4.10e-28 115
Msa0001380 AT4G38550.2 33.333 168 111 1 205 371 453 620 4.20e-28 116
Msa0001380 AT2G20960.2 32.432 185 121 3 211 394 522 703 4.45e-28 116
Msa0001380 AT2G20960.3 32.432 185 121 3 211 394 487 668 4.65e-28 116
Msa0001380 AT4G38550.4 33.333 168 111 1 205 371 357 524 4.91e-28 116
Msa0001380 AT4G38560.2 38.889 162 98 1 211 371 332 493 3.97e-27 113
Msa0001380 AT4G38560.1 38.889 162 98 1 211 371 330 491 4.61e-27 113
Msa0001380 AT5G11140.1 34.270 178 113 3 218 394 57 231 6.16e-26 105
Msa0001380 AT2G20950.1 34.161 161 105 1 212 371 332 492 3.18e-22 99.0
Msa0001380 AT2G20950.4 34.161 161 105 1 212 371 334 494 3.72e-22 98.6
Msa0001380 AT2G20950.2 34.161 161 105 1 212 371 315 475 3.99e-22 98.6
Msa0001380 AT2G20950.3 34.161 161 105 1 212 371 317 477 4.34e-22 98.2
Msa0001380 AT2G20950.8 33.529 170 112 1 203 371 350 519 4.40e-22 98.6
Msa0001380 AT2G20950.5 34.161 161 105 1 212 371 196 356 5.00e-22 97.1
Msa0001380 AT2G20950.9 34.161 161 105 1 212 371 196 356 5.00e-22 97.1
Msa0001380 AT2G20950.6 34.161 161 105 1 212 371 286 446 5.28e-22 97.8
Msa0001380 AT2G20950.14 34.161 161 105 1 212 371 288 448 5.59e-22 97.8
Msa0001380 AT2G20950.7 33.529 170 112 1 203 371 350 519 6.20e-22 98.2
Msa0001380 AT2G20950.13 33.529 170 112 1 203 371 306 475 1.19e-21 97.1
Msa0001380 AT2G20950.10 33.529 170 112 1 203 371 306 475 1.19e-21 97.1
Msa0001380 AT2G20950.12 33.529 170 112 1 203 371 272 441 1.28e-21 96.7
Msa0001380 AT2G20950.11 33.529 170 112 1 203 371 216 385 1.34e-21 96.3

Find 169 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCCCAATCGGAGATTT+TGG 0.127715 1_1:-3088026 Msa0001380:three_prime_UTR
AAGATCAATATGTCATTAAT+TGG 0.195712 1_1:-3091913 Msa0001380:three_prime_UTR
CTCAAACGATCTCTGATTTC+AGG 0.204618 1_1:+3092345 None:intergenic
GTTTGGTTCCCTTTGTCTTT+TGG 0.240265 1_1:+3093916 None:intergenic
TGATAAGGATTGGATGATTT+AGG 0.249464 1_1:+3093804 None:intergenic
GCCAGAGAAACTAAAATCTT+TGG 0.259330 1_1:+3092881 None:intergenic
TCAGGAATGGATTTGGCTAT+TGG 0.267801 1_1:+3091840 None:intergenic
CGGAAGAAGATTGTAATTCT+TGG 0.286432 1_1:+3092628 None:intergenic
CCATCCTTAACTTGATCTTT+AGG 0.299650 1_1:+3093014 None:intergenic
CTTGAGCAGCTCATGTCTTC+AGG 0.305135 1_1:-3092318 Msa0001380:CDS
GCCTTCTCTGTGTACTTTGT+AGG 0.306411 1_1:-3087722 Msa0001380:three_prime_UTR
ATTGATTATTGTAGGCTTCA+TGG 0.307859 1_1:+3088093 None:intergenic
AGAATAAGATTGATTATTGT+AGG 0.309019 1_1:+3088085 None:intergenic
CACTTGATATTCTTGATGCT+TGG 0.311559 1_1:+3088215 None:intergenic
TCATCTCTAATCTTCCCTTT+AGG 0.311796 1_1:-3088255 Msa0001380:three_prime_UTR
AATACATTACTCAATAAAAT+TGG 0.312289 1_1:-3092114 Msa0001380:three_prime_UTR
AATTGGATTGGTTTGAATAC+TGG 0.313900 1_1:+3088163 None:intergenic
CTTGACAAGTATGGTGATAT+AGG 0.315358 1_1:-3092717 Msa0001380:CDS
GATGCCAATTGCAACAATTC+AGG 0.316155 1_1:-3093774 Msa0001380:intron
TACAATGTCAAAGAAAGTTT+TGG 0.326292 1_1:-3092759 Msa0001380:CDS
AGGGGTTGGGTGTGGGAGCT+TGG 0.329501 1_1:-3087751 Msa0001380:three_prime_UTR
AAGTAGGATACGCGGGTAAT+TGG 0.334242 1_1:+3091801 None:intergenic
GTTTCATCAGAATTGGTTAC+TGG 0.334578 1_1:+3092918 None:intergenic
GAAGAAAAGAAATGCAAGTT+TGG 0.336047 1_1:+3092234 None:intergenic
ACCATGGAGGAGTCAATAAA+TGG 0.345511 1_1:-3094258 None:intergenic
AATAATAGAAAGGTTATTAA+TGG 0.347675 1_1:-3093858 Msa0001380:CDS
TTCACCAGTTTCATCAGAAT+TGG 0.348026 1_1:+3092911 None:intergenic
ATGAGAAGATTTATTCGGTT+TGG 0.348492 1_1:+3088315 None:intergenic
TGATTTATGATGAGAAGAAT+TGG 0.356868 1_1:+3088146 None:intergenic
GATGAGATCATTCCTTCTTC+TGG 0.358336 1_1:-3093174 Msa0001380:CDS
TTGACAAGTATGGTGATATA+GGG 0.359918 1_1:-3092716 Msa0001380:CDS
CTTCTTCCTATGATCAATCT+TGG 0.363222 1_1:+3093272 None:intergenic
ACAGATCGACCAAATACTTT+TGG 0.365016 1_1:+3092055 None:intergenic
ATCTGAAATCGAAAACGAAT+TGG 0.366745 1_1:+3087777 None:intergenic
ACTTGTCAAGTATTGTTTGT+AGG 0.367480 1_1:+3092730 None:intergenic
GATTTATGAGAAGATTTATT+CGG 0.368193 1_1:+3088310 None:intergenic
ATGTGTAATTGAGCAGAAAT+TGG 0.373749 1_1:+3093150 None:intergenic
ACAATCGGCGCCGGAAAATT+CGG 0.376572 1_1:+3087965 None:intergenic
CAAACAATACTTGACAAGTA+TGG 0.386291 1_1:-3092726 Msa0001380:CDS
ACTTGATATTCTTGATGCTT+GGG 0.388106 1_1:+3088216 None:intergenic
TCTGAATCCCGTGTTTCAAT+TGG 0.388960 1_1:-3092786 Msa0001380:CDS
GTCGTCCTCCGTGGCACAAT+CGG 0.392241 1_1:+3087950 None:intergenic
GATCTCTGATTTCAGGAATT+CGG 0.392697 1_1:+3092352 None:intergenic
TATAGGGGCAAGCTGTGATT+TGG 0.401703 1_1:-3092700 Msa0001380:CDS
GACCAAAGTGAGTGAATTGT+TGG 0.402832 1_1:-3092592 Msa0001380:CDS
GATTAGTCACCATCAGGATA+TGG 0.405327 1_1:-3092484 Msa0001380:CDS
TGATCTATCTTTGACTTGAT+AGG 0.411943 1_1:+3092270 None:intergenic
GTAACCAATTCTGATGAAAC+TGG 0.417672 1_1:-3092915 Msa0001380:CDS
AGAACCTGAATTGTTGCAAT+TGG 0.418058 1_1:+3093770 None:intergenic
ATCTTCCCTTTAGGTCCCAT+TGG 0.420949 1_1:-3088246 Msa0001380:three_prime_UTR
ACAACTCATGACGTTGGTTC+TGG 0.424708 1_1:+3091881 None:intergenic
TGAATTGTTGGATATTGTTA+AGG 0.426225 1_1:-3092580 Msa0001380:CDS
GGGAAGATTAGAGATGAAGT+TGG 0.431054 1_1:+3088261 None:intergenic
TACCTCCTTCCCATATCATT+CGG 0.432343 1_1:+3087629 None:intergenic
ATTACACATCCCAGATGTTA+TGG 0.434766 1_1:-3093136 Msa0001380:intron
GGTGGAACACTTTGAAGAAC+AGG 0.435930 1_1:+3093228 None:intergenic
AGGGACAGTACCATAACATC+TGG 0.436687 1_1:+3093126 None:intergenic
ATGCTTGGGCAGGGCACCAA+TGG 0.438660 1_1:+3088230 None:intergenic
AGCAGCAACATGATGTGGTT+TGG 0.440038 1_1:+3093899 None:intergenic
GGCTAACTATGATCGTGAAA+TGG 0.440278 1_1:-3092451 Msa0001380:CDS
ATGTTCAATTGCAGCTATGA+AGG 0.441304 1_1:-3087489 Msa0001380:three_prime_UTR
TCACCATCAGGATATGGAAA+TGG 0.446433 1_1:-3092478 Msa0001380:CDS
ATGTTGATGATGAAGATTGT+TGG 0.449401 1_1:-3087462 Msa0001380:three_prime_UTR
CATGGAGTGTGTATGCTTTG+TGG 0.449719 1_1:-3092652 Msa0001380:CDS
ATGGAAGAAGAAGGTCTTGA+TGG 0.450101 1_1:+3088339 None:intergenic
TTGGCATCACACTTATGATA+AGG 0.450367 1_1:+3093789 None:intergenic
GCAGAGAATCGAAGATGAAA+AGG 0.459920 1_1:-3087813 Msa0001380:three_prime_UTR
GATATTCTTGATGCTTGGGC+AGG 0.464022 1_1:+3088220 None:intergenic
TAGTATCTATTTCTTTGTTG+TGG 0.469830 1_1:+3092844 None:intergenic
TGAATTGATTAGTCACCATC+AGG 0.473279 1_1:-3092490 Msa0001380:CDS
GGAAGATTAGAGATGAAGTT+GGG 0.473382 1_1:+3088262 None:intergenic
ATCCAACAATTCACTCACTT+TGG 0.473716 1_1:+3092590 None:intergenic
AATGAATTGAGAAAGATTGA+AGG 0.474070 1_1:+3094224 None:intergenic
TATAGAAAGACTTTCTATAC+AGG 0.482578 1_1:+3091945 None:intergenic
TCTTTGTTGTGGAGAGGAAG+GGG 0.483390 1_1:+3092855 None:intergenic
TGCTTGGGCAGGGCACCAAT+GGG 0.484157 1_1:+3088231 None:intergenic
TTTGGTCTTACTTATTGAAT+CGG 0.484588 1_1:+3092608 None:intergenic
TATGATGAGAAGAATTGGAT+TGG 0.485063 1_1:+3088151 None:intergenic
GCAGCCTAAAGATCAAGTTA+AGG 0.486423 1_1:-3093018 Msa0001380:CDS
CTTACAACAATTAATTAGCT+AGG 0.492403 1_1:+3094120 None:intergenic
GTCAAGTATTGTTTGTAGGA+TGG 0.493819 1_1:+3092734 None:intergenic
AAGATTTATTCGGTTTGGAA+TGG 0.494529 1_1:+3088320 None:intergenic
GCTTGAGTGCATTGATGGTA+AGG 0.495066 1_1:+3093945 None:intergenic
AGGGCACCAATGGGACCTAA+AGG 0.495079 1_1:+3088240 None:intergenic
TTCTTTGTTGTGGAGAGGAA+GGG 0.496215 1_1:+3092854 None:intergenic
TGTGTAATTGAGCAGAAATT+GGG 0.497868 1_1:+3093151 None:intergenic
TGGTCCCAAAATCTCCGATT+GGG 0.498795 1_1:+3088021 None:intergenic
AACAAGCTTGAGTGCATTGA+TGG 0.499159 1_1:+3093940 None:intergenic
CTTTGAAGAACAGGAGGTTG+TGG 0.499804 1_1:+3093237 None:intergenic
TCAGGATATGGAAATGGAAA+AGG 0.500818 1_1:-3092472 Msa0001380:CDS
TTTCTTTGTTGTGGAGAGGA+AGG 0.502763 1_1:+3092853 None:intergenic
CTCCGTGGCACAATCGGCGC+CGG 0.503510 1_1:+3087956 None:intergenic
GAAATAGATACTAGTAGCGA+AGG 0.504275 1_1:-3092834 Msa0001380:CDS
AGAACAGCTAGAATCAGAGT+TGG 0.506724 1_1:-3092418 Msa0001380:CDS
TTTCCATTTCCATATCCTGA+TGG 0.507099 1_1:+3092475 None:intergenic
TCTAAGAAGAAGTATGATGA+GGG 0.507225 1_1:-3087420 Msa0001380:three_prime_UTR
TAAAACTGAAACAAAGAAAG+AGG 0.508090 1_1:-3092970 Msa0001380:CDS
GCAGAAATTGGGCCAGAAGA+AGG 0.508734 1_1:+3093162 None:intergenic
ATATTCTTGATGCTTGGGCA+GGG 0.508973 1_1:+3088221 None:intergenic
CTCATTCCAAGATTGATCAT+AGG 0.510237 1_1:-3093278 Msa0001380:CDS
CAGCAGTTGTTCATCCCAAT+CGG 0.511774 1_1:-3088035 Msa0001380:three_prime_UTR
CGATTGGGATGAACAACTGC+TGG 0.514311 1_1:+3088036 None:intergenic
AAATTGGATGCAAGCAACAT+AGG 0.517141 1_1:-3092098 Msa0001380:three_prime_UTR
GAAGAAAGAACGATGGAAAG+TGG 0.519653 1_1:+3094178 None:intergenic
ATCACACTTATGATAAGGAT+TGG 0.522199 1_1:+3093794 None:intergenic
AAACCACATCATGTTGCTGC+TGG 0.525538 1_1:-3093897 Msa0001380:CDS
ATGAATTGAGAAAGATTGAA+GGG 0.528679 1_1:+3094225 None:intergenic
GGGCACCAATGGGACCTAAA+GGG 0.528983 1_1:+3088241 None:intergenic
GGTGATTCTTACTATACACT+TGG 0.531558 1_1:+3088001 None:intergenic
TTCCGGCGCCGATTGTGCCA+CGG 0.532236 1_1:-3087958 Msa0001380:three_prime_UTR
TTGGTCCCAAAATCTCCGAT+TGG 0.536870 1_1:+3088020 None:intergenic
CGGTTTGGAATGGAAGAAGA+AGG 0.539205 1_1:+3088330 None:intergenic
CGGACCTCACACAACAATGC+TGG 0.541730 1_1:+3087838 None:intergenic
TAGGATACGCGGGTAATTGG+AGG 0.541746 1_1:+3091804 None:intergenic
AAAGTATTTGGTCGATCTGT+AGG 0.544091 1_1:-3092052 Msa0001380:three_prime_UTR
ACAATGCTGGAGCGGTGTCT+CGG 0.548963 1_1:+3087851 None:intergenic
CAAGATTGATCATAGGAAGA+AGG 0.551150 1_1:-3093271 Msa0001380:CDS
CTGCTCATCTTCGTGTAGCA+TGG 0.552976 1_1:-3092548 Msa0001380:CDS
ATCTAAGAAGAAGTATGATG+AGG 0.555424 1_1:-3087421 Msa0001380:three_prime_UTR
AAGTAATAGCAATAATAGAA+AGG 0.561570 1_1:-3093868 Msa0001380:CDS
AGAATCAGAGTTGGAAACAT+TGG 0.561728 1_1:-3092409 Msa0001380:CDS
AATAGAAAGGTTATTAATGG+AGG 0.564289 1_1:-3093855 Msa0001380:CDS
GCTTGTTCCCAAAAGACAAA+GGG 0.566369 1_1:-3093924 Msa0001380:CDS
TCATCTTCGATTCTCTGCGT+CGG 0.568711 1_1:+3087818 None:intergenic
TGTAATGAGGTCATATTACA+TGG 0.570115 1_1:-3092670 Msa0001380:CDS
GGAATGTGCGCTGCATCTGA+CGG 0.573801 1_1:-3087886 Msa0001380:three_prime_UTR
ATCATTCGGAAAATCAAATG+AGG 0.576166 1_1:+3087643 None:intergenic
CAGAGAATCGAAGATGAAAA+GGG 0.579603 1_1:-3087812 Msa0001380:three_prime_UTR
CTATGATCAATCTTGGAATG+AGG 0.584964 1_1:+3093279 None:intergenic
TGCGCTGCATCTGACGGAGA+CGG 0.586733 1_1:-3087880 Msa0001380:three_prime_UTR
AAGGAAACTGCTTATCACAT+TGG 0.588505 1_1:-3092180 Msa0001380:three_prime_UTR
TGATGAAGATTGTTGGATTG+TGG 0.588746 1_1:-3087455 Msa0001380:three_prime_UTR
TCTATTTCTTTGTTGTGGAG+AGG 0.590301 1_1:+3092849 None:intergenic
AAATTCGGATGAACAACTGT+TGG 0.590371 1_1:+3087980 None:intergenic
TCCTACAAAGTACACAGAGA+AGG 0.590899 1_1:+3087721 None:intergenic
CTTTGACTTGATAGGTAGCG+TGG 0.591078 1_1:+3092278 None:intergenic
CGCTCCAGCATTGTTGTGTG+AGG 0.593322 1_1:-3087842 Msa0001380:three_prime_UTR
ACAATTAATTAGCTAGGACT+AGG 0.595508 1_1:+3094126 None:intergenic
GATTGATCATAGGAAGAAGG+TGG 0.597603 1_1:-3093268 Msa0001380:CDS
AGCTTGTTCCCAAAAGACAA+AGG 0.610214 1_1:-3093925 Msa0001380:CDS
CCTAAAGATCAAGTTAAGGA+TGG 0.613275 1_1:-3093014 Msa0001380:CDS
ATTTGGAATCAGTTGTAATG+AGG 0.618166 1_1:-3092683 Msa0001380:CDS
ATCAATCTTGGAATGAGGAG+TGG 0.623309 1_1:+3093284 None:intergenic
TGACAAGTATGGTGATATAG+GGG 0.624821 1_1:-3092715 Msa0001380:CDS
ATTGGCTCAGAAAGAACAAG+AGG 0.625513 1_1:-3092391 Msa0001380:CDS
CGACGGTGAGGAAGAGACAG+AGG 0.628557 1_1:-3087928 Msa0001380:three_prime_UTR
TAGATGATGTCTAGTAGCAA+CGG 0.628729 1_1:-3093990 Msa0001380:CDS
CTCACACAACAATGCTGGAG+CGG 0.630309 1_1:+3087843 None:intergenic
AGTTAAGGATGGTGCTACTG+AGG 0.634421 1_1:-3093003 Msa0001380:CDS
TCTGATGAAACTGGTGAAGG+TGG 0.634531 1_1:-3092906 Msa0001380:CDS
GTACCAGCAGCAACATGATG+TGG 0.635041 1_1:+3093894 None:intergenic
CACGGAGGACGACGACGGTG+AGG 0.638089 1_1:-3087940 Msa0001380:three_prime_UTR
AAAGTCACAACTCATGACGT+TGG 0.643038 1_1:+3091875 None:intergenic
AGAGGAAGGTGAGAGTGCCG+CGG 0.644711 1_1:-3087910 Msa0001380:three_prime_UTR
GGGACAGTACCATAACATCT+GGG 0.646171 1_1:+3093127 None:intergenic
GGTGAGGAAGAGACAGAGGA+AGG 0.646523 1_1:-3087924 Msa0001380:three_prime_UTR
ATTGATCATAGGAAGAAGGT+GGG 0.646766 1_1:-3093267 Msa0001380:CDS
GGAACACTTTGAAGAACAGG+AGG 0.650409 1_1:+3093231 None:intergenic
TGAATTGAGAAAGATTGAAG+GGG 0.655447 1_1:+3094226 None:intergenic
TTCCGAATGATATGGGAAGG+AGG 0.657733 1_1:-3087631 Msa0001380:three_prime_UTR
CTCACCGTCGTCGTCCTCCG+TGG 0.657770 1_1:+3087941 None:intergenic
ATGCAGCGCACATTCCGCCG+CGG 0.663326 1_1:+3087893 None:intergenic
TGGAGGAGTCAATAAATGGA+CGG 0.667212 1_1:-3094254 None:intergenic
TTATGATAGTAGTTATCAAG+CGG 0.677681 1_1:+3094150 None:intergenic
GGAAGGTGAGAGTGCCGCGG+CGG 0.678059 1_1:-3087907 Msa0001380:three_prime_UTR
TGTGCCACGGAGGACGACGA+CGG 0.679917 1_1:-3087945 Msa0001380:three_prime_UTR
AATTCTGATGAAACTGGTGA+AGG 0.697682 1_1:-3092909 Msa0001380:CDS
CGGCGCCGATTGTGCCACGG+AGG 0.718739 1_1:-3087955 Msa0001380:three_prime_UTR
GGTACAAGAAGAAAGAACGA+TGG 0.756411 1_1:+3094171 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTAAATTT+GGG + chr1_1:3093259-3093278 None:intergenic 0.0%
!!! TTTTTTTTTTTTTTTAAATT+TGG + chr1_1:3093260-3093279 None:intergenic 0.0%
!!! TTTTTTACAAAAATAAATAG+AGG - chr1_1:3087965-3087984 Msa0001380:three_prime_UTR 10.0%
!!! TTTTTACAAAAATAAATAGA+GGG - chr1_1:3087966-3087985 Msa0001380:three_prime_UTR 10.0%
!! TTAATTTAAATTATAAGTGT+TGG + chr1_1:3088073-3088092 None:intergenic 10.0%
!!! TTATATATGCTTTTTATAAT+TGG - chr1_1:3089662-3089681 Msa0001380:intron 10.0%
!! ATATAATCTAAAAATAATGT+AGG - chr1_1:3089936-3089955 Msa0001380:intron 10.0%
!! TTAAAAAAAATTATTCAATG+CGG + chr1_1:3090892-3090911 None:intergenic 10.0%
!! CATATTATTTCAAAATATAA+TGG - chr1_1:3092006-3092025 Msa0001380:three_prime_UTR 10.0%
!!! TTTATGTTTGATTTTATTTT+GGG + chr1_1:3092097-3092116 None:intergenic 10.0%
!!! ATTTATGTTTGATTTTATTT+TGG + chr1_1:3092098-3092117 None:intergenic 10.0%
!!! TCTTTAAAAAAAAAAATTAG+TGG - chr1_1:3094102-3094121 Msa0001380:intron 10.0%
!! AATAATAGAAAGGTTATTAA+TGG - chr1_1:3087791-3087810 Msa0001380:three_prime_UTR 15.0%
!!! TTTGGTTTTATATTAACAAA+AGG + chr1_1:3088557-3088576 None:intergenic 15.0%
!!! ATATATGGTTTATTATCTTT+TGG + chr1_1:3088575-3088594 None:intergenic 15.0%
!! AATACATTACTCAATAAAAT+TGG - chr1_1:3089535-3089554 Msa0001380:intron 15.0%
!!! TTACAATGGTTAAATTTTTA+AGG + chr1_1:3090052-3090071 None:intergenic 15.0%
!!! TTGTATAGTTTAATTTACAA+TGG + chr1_1:3090066-3090085 None:intergenic 15.0%
!! TTTATGGTCATTAATTAATT+TGG + chr1_1:3090496-3090515 None:intergenic 15.0%
!! AATTAATGACCATAAATTAA+AGG - chr1_1:3090500-3090519 Msa0001380:intron 15.0%
!!! CTTTTCATACATATTTTTAT+AGG + chr1_1:3090683-3090702 None:intergenic 15.0%
!! TAAAAAAAATTATTCAATGC+GGG + chr1_1:3090891-3090910 None:intergenic 15.0%
!!! ATAAAATATTTTTCTGCATT+CGG - chr1_1:3091081-3091100 Msa0001380:intron 15.0%
!! TTAAATAAATTAAAGGTCAA+TGG - chr1_1:3091466-3091485 Msa0001380:intron 15.0%
!!! ATAATATTTTCTTTCTTGTT+AGG + chr1_1:3091499-3091518 None:intergenic 15.0%
!! TTTATTCTACTTATATTAGA+CGG - chr1_1:3091617-3091636 Msa0001380:intron 15.0%
!!! TTATGTTGTTTTTGATAATT+TGG + chr1_1:3091926-3091945 None:intergenic 15.0%
!!! TTTTGAAATAATATGTAAGT+TGG + chr1_1:3092001-3092020 None:intergenic 15.0%
!!! ATAATGGATAGAAAATTATA+AGG - chr1_1:3092022-3092041 Msa0001380:three_prime_UTR 15.0%
!!! TAATGGATAGAAAATTATAA+GGG - chr1_1:3092023-3092042 Msa0001380:three_prime_UTR 15.0%
!! TGAGTTCATAATTAAATAAA+AGG - chr1_1:3092363-3092382 Msa0001380:CDS 15.0%
!! GAGTTCATAATTAAATAAAA+GGG - chr1_1:3092364-3092383 Msa0001380:CDS 15.0%
!! AGTTCATAATTAAATAAAAG+GGG - chr1_1:3092365-3092384 Msa0001380:CDS 15.0%
!! AAAATTAGTGGAAAAAAATT+TGG - chr1_1:3094114-3094133 Msa0001380:intron 15.0%
!! AAGTAATAGCAATAATAGAA+AGG - chr1_1:3087781-3087800 Msa0001380:three_prime_UTR 20.0%
!!! TTTAAATTATAAGTGTTGGT+TGG + chr1_1:3088069-3088088 None:intergenic 20.0%
!! ATAAAATAAGATCAAATTGC+AGG - chr1_1:3088340-3088359 Msa0001380:three_prime_UTR 20.0%
!!! TTTTTGTTATGAGAATAATG+TGG + chr1_1:3088454-3088473 None:intergenic 20.0%
!!! TTCTTTGTTTCAGTTTTATT+GGG + chr1_1:3088677-3088696 None:intergenic 20.0%
!!! TTTCTTTGTTTCAGTTTTAT+TGG + chr1_1:3088678-3088697 None:intergenic 20.0%
!! AAGATCAATATGTCATTAAT+TGG - chr1_1:3089736-3089755 Msa0001380:intron 20.0%
!! AATCTAAAAATAATGTAGGA+TGG - chr1_1:3089940-3089959 Msa0001380:intron 20.0%
!! ATCTAAAAATAATGTAGGAT+GGG - chr1_1:3089941-3089960 Msa0001380:intron 20.0%
!! CAATTGAAATGTAATGTTAA+AGG + chr1_1:3090385-3090404 None:intergenic 20.0%
!! CTTTAACATTACATTTCAAT+TGG - chr1_1:3090383-3090402 Msa0001380:intron 20.0%
!! AAAAAAAATTATTCAATGCG+GGG + chr1_1:3090890-3090909 None:intergenic 20.0%
!! AAACTACCATTGATATTTAA+AGG + chr1_1:3091017-3091036 None:intergenic 20.0%
!!! TAAAATATTTTTCTGCATTC+GGG - chr1_1:3091082-3091101 Msa0001380:intron 20.0%
!! AACATTTGCCATTAAAAAAA+TGG - chr1_1:3091527-3091546 Msa0001380:intron 20.0%
!! AACAAAACATATACTAATCA+CGG + chr1_1:3091560-3091579 None:intergenic 20.0%
!! GTTATAAAAATGATTCAATG+CGG + chr1_1:3091698-3091717 None:intergenic 20.0%
!!! GTAATTTTCTATATTTGAGA+CGG - chr1_1:3092395-3092414 Msa0001380:CDS 20.0%
!!! TTTTCTTTTCTTTTGTTCTT+AGG + chr1_1:3092595-3092614 None:intergenic 20.0%
!! GATTTATGAGAAGATTTATT+CGG + chr1_1:3093342-3093361 None:intergenic 20.0%
!!! TTTTGAGATTTTCTATAACA+TGG + chr1_1:3093536-3093555 None:intergenic 20.0%
!! AGAATAAGATTGATTATTGT+AGG + chr1_1:3093567-3093586 None:intergenic 20.0%
! ATGAATTGAGAAAGATTGAA+GGG + chr1_1:3087427-3087446 None:intergenic 25.0%
! AATGAATTGAGAAAGATTGA+AGG + chr1_1:3087428-3087447 None:intergenic 25.0%
! TTATGATAGTAGTTATCAAG+CGG + chr1_1:3087502-3087521 None:intergenic 25.0%
! CTTACAACAATTAATTAGCT+AGG + chr1_1:3087532-3087551 None:intergenic 25.0%
! AAATCCAACTAGAAAGAAAT+TGG - chr1_1:3087591-3087610 Msa0001380:three_prime_UTR 25.0%
! AATCCAACTAGAAAGAAATT+GGG - chr1_1:3087592-3087611 Msa0001380:three_prime_UTR 25.0%
! AATAGAAAGGTTATTAATGG+AGG - chr1_1:3087794-3087813 Msa0001380:three_prime_UTR 25.0%
! AATAGAGGGTTTATGAAAAA+TGG - chr1_1:3087980-3087999 Msa0001380:three_prime_UTR 25.0%
! TATTAGATTGAATACGTTAG+TGG + chr1_1:3088020-3088039 None:intergenic 25.0%
! AATGAAATGGTCAAACAAAA+TGG + chr1_1:3088193-3088212 None:intergenic 25.0%
! TTAACAAAAGGTTGTGTAAA+GGG + chr1_1:3088545-3088564 None:intergenic 25.0%
! ATTAACAAAAGGTTGTGTAA+AGG + chr1_1:3088546-3088565 None:intergenic 25.0%
!!! TCTTTGTTTCAGTTTTATTG+GGG + chr1_1:3088676-3088695 None:intergenic 25.0%
! TAAAACTGAAACAAAGAAAG+AGG - chr1_1:3088679-3088698 Msa0001380:intron 25.0%
!! TAGTATCTATTTCTTTGTTG+TGG + chr1_1:3088808-3088827 None:intergenic 25.0%
!! TGTATTTTCCAATTGAAACA+CGG + chr1_1:3088874-3088893 None:intergenic 25.0%
!! TACAATGTCAAAGAAAGTTT+TGG - chr1_1:3088890-3088909 Msa0001380:intron 25.0%
!!! TTTGGTCTTACTTATTGAAT+CGG + chr1_1:3089044-3089063 None:intergenic 25.0%
! TGAATTGTTGGATATTGTTA+AGG - chr1_1:3089069-3089088 Msa0001380:intron 25.0%
!!! TTTTTTCCTGTTTTTGTTTG+AGG - chr1_1:3089443-3089462 Msa0001380:intron 25.0%
!!! TTTTTCCTGTTTTTGTTTGA+GGG - chr1_1:3089444-3089463 Msa0001380:intron 25.0%
!!! TCTTTTATGCCAAAAGTATT+TGG - chr1_1:3089585-3089604 Msa0001380:intron 25.0%
! TATAGAAAGACTTTCTATAC+AGG + chr1_1:3089707-3089726 None:intergenic 25.0%
!! AAAAAATTCAGGAATGGATT+TGG + chr1_1:3089819-3089838 None:intergenic 25.0%
! TATTTCAGAATCCAAAAAGT+AGG + chr1_1:3089867-3089886 None:intergenic 25.0%
! TCTAAAAATAATGTAGGATG+GGG - chr1_1:3089942-3089961 Msa0001380:intron 25.0%
! AGTTATTACCAGTTCATTAA+TGG - chr1_1:3089973-3089992 Msa0001380:intron 25.0%
!!! GCTTGATGATTTTCTATTTT+AGG - chr1_1:3090294-3090313 Msa0001380:intron 25.0%
!! TTTGCTGATCCTTTAATTTA+TGG + chr1_1:3090512-3090531 None:intergenic 25.0%
! GTTTCATACATTTCTTTGAT+AGG + chr1_1:3090535-3090554 None:intergenic 25.0%
! TTCATGGTCATCAATTAATT+TGG + chr1_1:3090644-3090663 None:intergenic 25.0%
! TGATGCAATTTAATGAGAAT+AGG - chr1_1:3090706-3090725 Msa0001380:intron 25.0%
! TGCATTACAATATTTCTCTA+GGG + chr1_1:3090940-3090959 None:intergenic 25.0%
! ATGCATTACAATATTTCTCT+AGG + chr1_1:3090941-3090960 None:intergenic 25.0%
! TGTTAAAGTGAACATATTGT+TGG + chr1_1:3090967-3090986 None:intergenic 25.0%
!! CAATGGTAGTTTTTATAACA+AGG - chr1_1:3091025-3091044 Msa0001380:intron 25.0%
!!! TCTTCACATTATTTGTTGTA+AGG - chr1_1:3091359-3091378 Msa0001380:intron 25.0%
! ATTTAATCTTTCATCTTCGA+CGG - chr1_1:3091654-3091673 Msa0001380:intron 25.0%
! AATAAAGCAACCAAATCATT+CGG + chr1_1:3091802-3091821 None:intergenic 25.0%
! AATTATCAAACCGAATAACA+TGG - chr1_1:3091852-3091871 Msa0001380:three_prime_UTR 25.0%
!!! AGTTAATTTAGTTTGTGATG+TGG + chr1_1:3091960-3091979 None:intergenic 25.0%
! AGTCATCGTATATTCTTAAT+CGG + chr1_1:3092215-3092234 None:intergenic 25.0%
! TTAAGAATATACGATGACTA+TGG - chr1_1:3092216-3092235 Msa0001380:three_prime_UTR 25.0%
! TCTAAATTATTTCACTCACA+CGG + chr1_1:3092340-3092359 None:intergenic 25.0%
! TTTCTCTGATTTCAAAATGT+AGG + chr1_1:3092473-3092492 None:intergenic 25.0%
!! AATTCCCACAACATTTTAAA+TGG - chr1_1:3092978-3092997 Msa0001380:CDS 25.0%
!! ATTCCCACAACATTTTAAAT+GGG - chr1_1:3092979-3092998 Msa0001380:CDS 25.0%
!! AAACCCATTTAAAATGTTGT+GGG + chr1_1:3092985-3093004 None:intergenic 25.0%
!! AAAACCCATTTAAAATGTTG+TGG + chr1_1:3092986-3093005 None:intergenic 25.0%
! TTAAATGACACCTAATTGTA+GGG + chr1_1:3093020-3093039 None:intergenic 25.0%
! TTTAAATGACACCTAATTGT+AGG + chr1_1:3093021-3093040 None:intergenic 25.0%
! TGATTTATGATGAGAAGAAT+TGG + chr1_1:3093506-3093525 None:intergenic 25.0%
!! GTTTTCGATTTCAGATTTTA+GGG - chr1_1:3093879-3093898 Msa0001380:CDS 25.0%
!! TTTTCGATTTCAGATTTTAG+GGG - chr1_1:3093880-3093899 Msa0001380:CDS 25.0%
!!! ATTTGATTTTCCGAATGATA+TGG - chr1_1:3094010-3094029 Msa0001380:intron 25.0%
!!! TTTGATTTTCCGAATGATAT+GGG - chr1_1:3094011-3094030 Msa0001380:intron 25.0%
!!! TGAAGAATTTTTTTATACGC+TGG - chr1_1:3094050-3094069 Msa0001380:intron 25.0%
TGAATTGAGAAAGATTGAAG+GGG + chr1_1:3087426-3087445 None:intergenic 30.0%
ACAATTAATTAGCTAGGACT+AGG + chr1_1:3087526-3087545 None:intergenic 30.0%
! ATACCCAATTTCTTTCTAGT+TGG + chr1_1:3087598-3087617 None:intergenic 30.0%
TGATAAGGATTGGATGATTT+AGG + chr1_1:3087848-3087867 None:intergenic 30.0%
ATCACACTTATGATAAGGAT+TGG + chr1_1:3087858-3087877 None:intergenic 30.0%
GTTTGACCATTTCATTAGAA+TGG - chr1_1:3088197-3088216 Msa0001380:three_prime_UTR 30.0%
ACCATTTCATTAGAATGGAT+TGG - chr1_1:3088202-3088221 Msa0001380:three_prime_UTR 30.0%
ACCAATCCATTCTAATGAAA+TGG + chr1_1:3088206-3088225 None:intergenic 30.0%
!!! TGAGAATAATGTGGTTTTGT+TGG + chr1_1:3088445-3088464 None:intergenic 30.0%
TGTGTAATTGAGCAGAAATT+GGG + chr1_1:3088501-3088520 None:intergenic 30.0%
ATGTGTAATTGAGCAGAAAT+TGG + chr1_1:3088502-3088521 None:intergenic 30.0%
!!! TCCAAAGATTTTAGTTTCTC+TGG - chr1_1:3088767-3088786 Msa0001380:intron 30.0%
! GTATTTTCCAATTGAAACAC+GGG + chr1_1:3088873-3088892 None:intergenic 30.0%
! ACTTGTCAAGTATTGTTTGT+AGG + chr1_1:3088922-3088941 None:intergenic 30.0%
CAAACAATACTTGACAAGTA+TGG - chr1_1:3088923-3088942 Msa0001380:intron 30.0%
TTGACAAGTATGGTGATATA+GGG - chr1_1:3088933-3088952 Msa0001380:intron 30.0%
! ATTTGGAATCAGTTGTAATG+AGG - chr1_1:3088966-3088985 Msa0001380:intron 30.0%
TGTAATGAGGTCATATTACA+TGG - chr1_1:3088979-3088998 Msa0001380:intron 30.0%
!! TGATCTATCTTTGACTTGAT+AGG + chr1_1:3089382-3089401 None:intergenic 30.0%
GAAGAAAAGAAATGCAAGTT+TGG + chr1_1:3089418-3089437 None:intergenic 30.0%
CCTGAAAAAAAATTCAGGAA+TGG + chr1_1:3089825-3089844 None:intergenic 30.0%
!!! CCATTCCTGAATTTTTTTTC+AGG - chr1_1:3089822-3089841 Msa0001380:intron 30.0%
!!! CTTTCTTTTTTAGCATGCTT+TGG + chr1_1:3090001-3090020 None:intergenic 30.0%
AGTTACAACTTTGAACGTAT+TGG - chr1_1:3090186-3090205 Msa0001380:intron 30.0%
CCTAAATCAGTTTAACTAAC+GGG + chr1_1:3090212-3090231 None:intergenic 30.0%
CCCTAAATCAGTTTAACTAA+CGG + chr1_1:3090213-3090232 None:intergenic 30.0%
! CCGTTAGTTAAACTGATTTA+GGG - chr1_1:3090210-3090229 Msa0001380:intron 30.0%
ATGAAAAATTGTTGTGTGTG+AGG - chr1_1:3090252-3090271 Msa0001380:intron 30.0%
TGAAAAATTGTTGTGTGTGA+GGG - chr1_1:3090253-3090272 Msa0001380:intron 30.0%
AGAAATAAGTTCAAGCAAGT+TGG - chr1_1:3090319-3090338 Msa0001380:intron 30.0%
ATTTCAATTGGTGAAACGTT+TGG - chr1_1:3090395-3090414 Msa0001380:intron 30.0%
! AATTGATGACCATGAATTCA+AGG - chr1_1:3090648-3090667 Msa0001380:intron 30.0%
TTTGTTGATCCTTGAATTCA+TGG + chr1_1:3090660-3090679 None:intergenic 30.0%
CAATTTAATGAGAATAGGCA+TGG - chr1_1:3090711-3090730 Msa0001380:intron 30.0%
GTTGCTCCTTTAAATATCAA+TGG - chr1_1:3091008-3091027 Msa0001380:intron 30.0%
! TTTTTCCCGATTTCAAAACA+CGG + chr1_1:3091165-3091184 None:intergenic 30.0%
TAAGCGTACAACATTCTATT+AGG + chr1_1:3091306-3091325 None:intergenic 30.0%
!! TTCTTCTTTGGTTCTTTGTA+AGG - chr1_1:3091412-3091431 Msa0001380:intron 30.0%
!! TCTTCTTTGGTTCTTTGTAA+GGG - chr1_1:3091413-3091432 Msa0001380:intron 30.0%
!!! GCGAATCACCATTTTTTTAA+TGG + chr1_1:3091538-3091557 None:intergenic 30.0%
ATTTCTTTGACCGAATGATT+TGG - chr1_1:3091789-3091808 Msa0001380:three_prime_UTR 30.0%
TGTTGATATGCCATGTTATT+CGG + chr1_1:3091865-3091884 None:intergenic 30.0%
TGGATAGAAAATTATAAGGG+TGG - chr1_1:3092026-3092045 Msa0001380:three_prime_UTR 30.0%
AAAGAAACATGTGAAGATGA+TGG - chr1_1:3092122-3092141 Msa0001380:three_prime_UTR 30.0%
!! TTTTGAGTATGAGTTTGGTA+CGG - chr1_1:3092418-3092437 Msa0001380:CDS 30.0%
TTGGGTTTGAATATGAGTTT+GGG + chr1_1:3092496-3092515 None:intergenic 30.0%
ATTGGGTTTGAATATGAGTT+TGG + chr1_1:3092497-3092516 None:intergenic 30.0%
TATTCAAACCCAATCAAATG+CGG - chr1_1:3092503-3092522 Msa0001380:CDS 30.0%
AAAACTCGTTAAATCGGATT+CGG - chr1_1:3092529-3092548 Msa0001380:CDS 30.0%
ATATGTGTTTCCCTACAATT+AGG - chr1_1:3093007-3093026 Msa0001380:CDS 30.0%
AAAACTGACATTTCATGTGT+TGG + chr1_1:3093175-3093194 None:intergenic 30.0%
!! AAGATTTATTCGGTTTGGAA+TGG + chr1_1:3093332-3093351 None:intergenic 30.0%
ATGAGAAGATTTATTCGGTT+TGG + chr1_1:3093337-3093356 None:intergenic 30.0%
ACTTGATATTCTTGATGCTT+GGG + chr1_1:3093436-3093455 None:intergenic 30.0%
!!! GAAGTTTTTTGTTGAGGAAA+TGG + chr1_1:3093467-3093486 None:intergenic 30.0%
!!! ATACTGGAAGTTTTTTGTTG+AGG + chr1_1:3093473-3093492 None:intergenic 30.0%
!! AATTGGATTGGTTTGAATAC+TGG + chr1_1:3093489-3093508 None:intergenic 30.0%
TATGATGAGAAGAATTGGAT+TGG + chr1_1:3093501-3093520 None:intergenic 30.0%
ATTGATTATTGTAGGCTTCA+TGG + chr1_1:3093559-3093578 None:intergenic 30.0%
! ATCTGAAATCGAAAACGAAT+TGG + chr1_1:3093875-3093894 None:intergenic 30.0%
! CGTTTTCGATTTCAGATTTT+AGG - chr1_1:3093878-3093897 Msa0001380:CDS 30.0%
ATCATTCGGAAAATCAAATG+AGG + chr1_1:3094009-3094028 None:intergenic 30.0%
!! ATGTTGATGATGAAGATTGT+TGG - chr1_1:3094187-3094206 Msa0001380:five_prime_UTR 30.0%
! ATCTAAGAAGAAGTATGATG+AGG - chr1_1:3094228-3094247 Msa0001380:five_prime_UTR 30.0%
! TCTAAGAAGAAGTATGATGA+GGG - chr1_1:3094229-3094248 Msa0001380:five_prime_UTR 30.0%
TAGATGATGTCTAGTAGCAA+CGG - chr1_1:3087659-3087678 Msa0001380:three_prime_UTR 35.0%
!! TTTGGTTCCCTTTGTCTTTT+GGG + chr1_1:3087735-3087754 None:intergenic 35.0%
TTGGCATCACACTTATGATA+AGG + chr1_1:3087863-3087882 None:intergenic 35.0%
AGAACCTGAATTGTTGCAAT+TGG + chr1_1:3087882-3087901 None:intergenic 35.0%
CGTTTACATGTGTAGTAAGT+AGG - chr1_1:3088154-3088173 Msa0001380:three_prime_UTR 35.0%
TGCAGGAGATAAAAATGTGT+TGG + chr1_1:3088242-3088261 None:intergenic 35.0%
CTATGATCAATCTTGGAATG+AGG + chr1_1:3088373-3088392 None:intergenic 35.0%
CTCATTCCAAGATTGATCAT+AGG - chr1_1:3088371-3088390 Msa0001380:intron 35.0%
CTTCTTCCTATGATCAATCT+TGG + chr1_1:3088380-3088399 None:intergenic 35.0%
CAAGATTGATCATAGGAAGA+AGG - chr1_1:3088378-3088397 Msa0001380:intron 35.0%
ATTGATCATAGGAAGAAGGT+GGG - chr1_1:3088382-3088401 Msa0001380:intron 35.0%
!!! GAATAATGTGGTTTTGTTGG+TGG + chr1_1:3088442-3088461 None:intergenic 35.0%
ATTACACATCCCAGATGTTA+TGG - chr1_1:3088513-3088532 Msa0001380:intron 35.0%
! CCATCCTTAACTTGATCTTT+AGG + chr1_1:3088638-3088657 None:intergenic 35.0%
CCTAAAGATCAAGTTAAGGA+TGG - chr1_1:3088635-3088654 Msa0001380:intron 35.0%
!!! TTGTTTCAGTTTTATTGGGG+AGG + chr1_1:3088673-3088692 None:intergenic 35.0%
GTTTCATCAGAATTGGTTAC+TGG + chr1_1:3088734-3088753 None:intergenic 35.0%
GTAACCAATTCTGATGAAAC+TGG - chr1_1:3088734-3088753 Msa0001380:intron 35.0%
TTCACCAGTTTCATCAGAAT+TGG + chr1_1:3088741-3088760 None:intergenic 35.0%
AATTCTGATGAAACTGGTGA+AGG - chr1_1:3088740-3088759 Msa0001380:intron 35.0%
GCCAGAGAAACTAAAATCTT+TGG + chr1_1:3088771-3088790 None:intergenic 35.0%
! TCTATTTCTTTGTTGTGGAG+AGG + chr1_1:3088803-3088822 None:intergenic 35.0%
GAAATAGATACTAGTAGCGA+AGG - chr1_1:3088815-3088834 Msa0001380:intron 35.0%
! GTCAAGTATTGTTTGTAGGA+TGG + chr1_1:3088918-3088937 None:intergenic 35.0%
CTTGACAAGTATGGTGATAT+AGG - chr1_1:3088932-3088951 Msa0001380:intron 35.0%
TGACAAGTATGGTGATATAG+GGG - chr1_1:3088934-3088953 Msa0001380:intron 35.0%
CGGAAGAAGATTGTAATTCT+TGG + chr1_1:3089024-3089043 None:intergenic 35.0%
ATCCAACAATTCACTCACTT+TGG + chr1_1:3089062-3089081 None:intergenic 35.0%
! TGAATTGATTAGTCACCATC+AGG - chr1_1:3089159-3089178 Msa0001380:intron 35.0%
TTTCCATTTCCATATCCTGA+TGG + chr1_1:3089177-3089196 None:intergenic 35.0%
TCAGGATATGGAAATGGAAA+AGG - chr1_1:3089177-3089196 Msa0001380:intron 35.0%
AGAATCAGAGTTGGAAACAT+TGG - chr1_1:3089240-3089259 Msa0001380:intron 35.0%
GATCTCTGATTTCAGGAATT+CGG + chr1_1:3089300-3089319 None:intergenic 35.0%
CTTAACCCTCAAACAAAAAC+AGG + chr1_1:3089452-3089471 None:intergenic 35.0%
!!! CTGTTTTTGTTTGAGGGTTA+AGG - chr1_1:3089450-3089469 Msa0001380:intron 35.0%
AAGGAAACTGCTTATCACAT+TGG - chr1_1:3089469-3089488 Msa0001380:intron 35.0%
AAATTGGATGCAAGCAACAT+AGG - chr1_1:3089551-3089570 Msa0001380:intron 35.0%
! ACAGATCGACCAAATACTTT+TGG + chr1_1:3089597-3089616 None:intergenic 35.0%
! AAAGTATTTGGTCGATCTGT+AGG - chr1_1:3089597-3089616 Msa0001380:intron 35.0%
AATCCAAAAAGTAGGATACG+CGG + chr1_1:3089859-3089878 None:intergenic 35.0%
!! CTTTGGAACCATTAATGAAC+TGG + chr1_1:3089984-3090003 None:intergenic 35.0%
! ACAGTAAAAACATTTGCTGC+TGG - chr1_1:3090144-3090163 Msa0001380:intron 35.0%
! CCCGTTAGTTAAACTGATTT+AGG - chr1_1:3090209-3090228 Msa0001380:intron 35.0%
GAAAAATTGTTGTGTGTGAG+GGG - chr1_1:3090254-3090273 Msa0001380:intron 35.0%
AAAAATTGTTGTGTGTGAGG+GGG - chr1_1:3090255-3090274 Msa0001380:intron 35.0%
TATCATTTGCCACGTATACA+TGG + chr1_1:3090346-3090365 None:intergenic 35.0%
TACGTGGCAAATGATATAGA+TGG - chr1_1:3090350-3090369 Msa0001380:intron 35.0%
ACGTGGCAAATGATATAGAT+GGG - chr1_1:3090351-3090370 Msa0001380:intron 35.0%
AACAGACTTGATGCAATTGA+CGG - chr1_1:3090552-3090571 Msa0001380:intron 35.0%
AGTATATGAGAATCGGGTAT+GGG + chr1_1:3090776-3090795 None:intergenic 35.0%
TAGTATATGAGAATCGGGTA+TGG + chr1_1:3090777-3090796 None:intergenic 35.0%
AAATTATTCAATGCGGGGAT+GGG + chr1_1:3090885-3090904 None:intergenic 35.0%
AAAATTATTCAATGCGGGGA+TGG + chr1_1:3090886-3090905 None:intergenic 35.0%
! ATATTTTTCTGCATTCGGGA+CGG - chr1_1:3091086-3091105 Msa0001380:intron 35.0%
! TTTTCCCGATTTCAAAACAC+GGG + chr1_1:3091164-3091183 None:intergenic 35.0%
GCATTACAACATTGCACTTT+AGG + chr1_1:3091742-3091761 None:intergenic 35.0%
! TTTGTGATGTGGTTTGTACT+TGG + chr1_1:3091949-3091968 None:intergenic 35.0%
!!! GTGGTGAACGTTTTTAACTT+AGG - chr1_1:3092045-3092064 Msa0001380:three_prime_UTR 35.0%
!!! GGTTACGTTTCGTTTTGTTT+TGG + chr1_1:3092076-3092095 None:intergenic 35.0%
GACAAAGAGAGTGGAAATAA+TGG - chr1_1:3092146-3092165 Msa0001380:three_prime_UTR 35.0%
ATATACGATGACTATGGTGA+TGG - chr1_1:3092222-3092241 Msa0001380:three_prime_UTR 35.0%
ATGGAGAAGAGAGATACTAA+GGG - chr1_1:3092241-3092260 Msa0001380:exon 35.0%
TTTGAGTATGAGTTTGGTAC+GGG - chr1_1:3092419-3092438 Msa0001380:CDS 35.0%
TCAAAATGTAGGTATGAGAC+AGG + chr1_1:3092462-3092481 None:intergenic 35.0%
ATTCAAACCCAATCAAATGC+GGG - chr1_1:3092504-3092523 Msa0001380:CDS 35.0%
TCAAGTTATAACACAGTCGT+AGG - chr1_1:3092634-3092653 Msa0001380:CDS 35.0%
CAAGTTATAACACAGTCGTA+GGG - chr1_1:3092635-3092654 Msa0001380:CDS 35.0%
AAGTTATAACACAGTCGTAG+GGG - chr1_1:3092636-3092655 Msa0001380:CDS 35.0%
CTTTAAGTGTAGTAGTGAAG+TGG + chr1_1:3092670-3092689 None:intergenic 35.0%
!! CTTTGCAAAGTTAATTTGCC+AGG + chr1_1:3093067-3093086 None:intergenic 35.0%
!! ACGTCATTAATTTGATGACG+TGG - chr1_1:3093132-3093151 Msa0001380:intron 35.0%
ATGAGAAGAAGATGAAGACA+GGG + chr1_1:3093200-3093219 None:intergenic 35.0%
AATGAGAAGAAGATGAAGAC+AGG + chr1_1:3093201-3093220 None:intergenic 35.0%
TTCTCTCTTCTTCTTCTTAC+TGG - chr1_1:3093219-3093238 Msa0001380:CDS 35.0%
GGAAGATTAGAGATGAAGTT+GGG + chr1_1:3093390-3093409 None:intergenic 35.0%
TCATCTCTAATCTTCCCTTT+AGG - chr1_1:3093394-3093413 Msa0001380:intron 35.0%
CACTTGATATTCTTGATGCT+TGG + chr1_1:3093437-3093456 None:intergenic 35.0%
GGTGATTCTTACTATACACT+TGG + chr1_1:3093651-3093670 None:intergenic 35.0%
AAATTCGGATGAACAACTGT+TGG + chr1_1:3093672-3093691 None:intergenic 35.0%
! AGTTGTTCATCCGAATTTTC+CGG - chr1_1:3093674-3093693 Msa0001380:intron 35.0%
CAGAGAATCGAAGATGAAAA+GGG - chr1_1:3093837-3093856 Msa0001380:CDS 35.0%
!! GATTTCAGATTTTAGGGGTT+GGG - chr1_1:3093885-3093904 Msa0001380:CDS 35.0%
! ATTTTCCGAATGATATGGGA+AGG - chr1_1:3094015-3094034 Msa0001380:intron 35.0%
ATGTTCAATTGCAGCTATGA+AGG - chr1_1:3094160-3094179 Msa0001380:five_prime_UTR 35.0%
TGATGAAGATTGTTGGATTG+TGG - chr1_1:3094194-3094213 Msa0001380:five_prime_UTR 35.0%
GAAGAAAGAACGATGGAAAG+TGG + chr1_1:3087474-3087493 None:intergenic 40.0%
GGTACAAGAAGAAAGAACGA+TGG + chr1_1:3087481-3087500 None:intergenic 40.0%
AACAAGCTTGAGTGCATTGA+TGG + chr1_1:3087712-3087731 None:intergenic 40.0%
! AGCTTGTTCCCAAAAGACAA+AGG - chr1_1:3087724-3087743 Msa0001380:three_prime_UTR 40.0%
GCTTGTTCCCAAAAGACAAA+GGG - chr1_1:3087725-3087744 Msa0001380:three_prime_UTR 40.0%
!! GTTTGGTTCCCTTTGTCTTT+TGG + chr1_1:3087736-3087755 None:intergenic 40.0%
GATGCCAATTGCAACAATTC+AGG - chr1_1:3087875-3087894 Msa0001380:three_prime_UTR 40.0%
TGTAATGACACAATGAGTGC+AGG + chr1_1:3088259-3088278 None:intergenic 40.0%
ATCAATCTTGGAATGAGGAG+TGG + chr1_1:3088368-3088387 None:intergenic 40.0%
GATTGATCATAGGAAGAAGG+TGG - chr1_1:3088381-3088400 Msa0001380:intron 40.0%
GATGAGATCATTCCTTCTTC+TGG - chr1_1:3088475-3088494 Msa0001380:intron 40.0%
GCAGCCTAAAGATCAAGTTA+AGG - chr1_1:3088631-3088650 Msa0001380:intron 40.0%
! TTCTTTGTTGTGGAGAGGAA+GGG + chr1_1:3088798-3088817 None:intergenic 40.0%
! TTTCTTTGTTGTGGAGAGGA+AGG + chr1_1:3088799-3088818 None:intergenic 40.0%
TCTGAATCCCGTGTTTCAAT+TGG - chr1_1:3088863-3088882 Msa0001380:intron 40.0%
GACCAAAGTGAGTGAATTGT+TGG - chr1_1:3089057-3089076 Msa0001380:intron 40.0%
! GATTAGTCACCATCAGGATA+TGG - chr1_1:3089165-3089184 Msa0001380:intron 40.0%
TCACCATCAGGATATGGAAA+TGG - chr1_1:3089171-3089190 Msa0001380:intron 40.0%
GGCTAACTATGATCGTGAAA+TGG - chr1_1:3089198-3089217 Msa0001380:intron 40.0%
AGAACAGCTAGAATCAGAGT+TGG - chr1_1:3089231-3089250 Msa0001380:intron 40.0%
! ATTGGCTCAGAAAGAACAAG+AGG - chr1_1:3089258-3089277 Msa0001380:intron 40.0%
CTCAAACGATCTCTGATTTC+AGG + chr1_1:3089307-3089326 None:intergenic 40.0%
AAAGTCACAACTCATGACGT+TGG + chr1_1:3089777-3089796 None:intergenic 40.0%
! TCAGGAATGGATTTGGCTAT+TGG + chr1_1:3089812-3089831 None:intergenic 40.0%
GGAGGCCTGAAAAAAAATTC+AGG + chr1_1:3089830-3089849 None:intergenic 40.0%
ATCCAAAAAGTAGGATACGC+GGG + chr1_1:3089858-3089877 None:intergenic 40.0%
! CTGATTTAGGGTGAATACGA+TGG - chr1_1:3090222-3090241 Msa0001380:intron 40.0%
AATGAGAATAGGCATGGCAA+TGG - chr1_1:3090717-3090736 Msa0001380:intron 40.0%
ATGAGAATAGGCATGGCAAT+GGG - chr1_1:3090718-3090737 Msa0001380:intron 40.0%
GTATATGAGAATCGGGTATG+GGG + chr1_1:3090775-3090794 None:intergenic 40.0%
!! ACGGGCTAGTATATGAGAAT+CGG + chr1_1:3090783-3090802 None:intergenic 40.0%
TTCAATTTCTCATCCCCGTT+GGG + chr1_1:3090819-3090838 None:intergenic 40.0%
! TATTTTTCTGCATTCGGGAC+GGG - chr1_1:3091087-3091106 Msa0001380:intron 40.0%
CGATTTCAAAACACGGGTAT+GGG + chr1_1:3091158-3091177 None:intergenic 40.0%
!!! CCATACCCGTGTTTTGAAAT+CGG - chr1_1:3091156-3091175 Msa0001380:intron 40.0%
!!! CATACCCGTGTTTTGAAATC+GGG - chr1_1:3091157-3091176 Msa0001380:intron 40.0%
ATACCCAAACCCAGTCAAAA+CGG - chr1_1:3091194-3091213 Msa0001380:intron 40.0%
AAAACCCGTCAAATTGGGTT+TGG - chr1_1:3091219-3091238 Msa0001380:intron 40.0%
CAAACCAAACCCAATTTGAC+GGG + chr1_1:3091226-3091245 None:intergenic 40.0%
CCAAACCAAACCCAATTTGA+CGG + chr1_1:3091227-3091246 None:intergenic 40.0%
! CGTCAAATTGGGTTTGGTTT+GGG - chr1_1:3091225-3091244 Msa0001380:intron 40.0%
!! AAATTGGGTTTGGTTTGGGT+GGG - chr1_1:3091229-3091248 Msa0001380:intron 40.0%
CATGTGTTCTCATTTAGGCA+TGG + chr1_1:3091279-3091298 None:intergenic 40.0%
CATGCCTAAATGAGAACACA+TGG - chr1_1:3091277-3091296 Msa0001380:intron 40.0%
GTCTCCATGTGTTCTCATTT+AGG + chr1_1:3091284-3091303 None:intergenic 40.0%
TGTAAGGCGTGATAGCATTA+AGG - chr1_1:3091375-3091394 Msa0001380:intron 40.0%
! TCTTTCATCTTCGACGGTTT+TGG - chr1_1:3091660-3091679 Msa0001380:intron 40.0%
! CTTTCATCTTCGACGGTTTT+GGG - chr1_1:3091661-3091680 Msa0001380:intron 40.0%
TTTACAACGTGATTCGCTCT+TGG + chr1_1:3092177-3092196 None:intergenic 40.0%
GATGGAGAAGAGAGATACTA+AGG - chr1_1:3092240-3092259 Msa0001380:three_prime_UTR 40.0%
AGAAGAGAGATACTAAGGGT+GGG - chr1_1:3092245-3092264 Msa0001380:exon 40.0%
ACAGAGAGAACTCATAGAAG+TGG - chr1_1:3092283-3092302 Msa0001380:CDS 40.0%
CAGAGAGAACTCATAGAAGT+GGG - chr1_1:3092284-3092303 Msa0001380:CDS 40.0%
!!! GACGGTTTTGAGTATGAGTT+TGG - chr1_1:3092413-3092432 Msa0001380:CDS 40.0%
TTCAAACCCAATCAAATGCG+GGG - chr1_1:3092505-3092524 Msa0001380:CDS 40.0%
! TCGTTAAATCGGATTCGGTT+TGG - chr1_1:3092534-3092553 Msa0001380:CDS 40.0%
ATAGCAAAACTATGTACCCG+TGG + chr1_1:3092568-3092587 None:intergenic 40.0%
TAGCGCTGCATTTATTTACG+TGG + chr1_1:3092931-3092950 None:intergenic 40.0%
GTCACTGTAATCGTTAATCC+TGG - chr1_1:3093046-3093065 Msa0001380:intron 40.0%
ACAGTCATTAAGTGGGTCAA+GGG + chr1_1:3093111-3093130 None:intergenic 40.0%
TGACGTGACAGTCATTAAGT+GGG + chr1_1:3093118-3093137 None:intergenic 40.0%
ATGACGTGACAGTCATTAAG+TGG + chr1_1:3093119-3093138 None:intergenic 40.0%
TGAGAAGAAGATGAAGACAG+GGG + chr1_1:3093199-3093218 None:intergenic 40.0%
ATGGAAGAAGAAGGTCTTGA+TGG + chr1_1:3093313-3093332 None:intergenic 40.0%
GGGAAGATTAGAGATGAAGT+TGG + chr1_1:3093391-3093410 None:intergenic 40.0%
ATATTCTTGATGCTTGGGCA+GGG + chr1_1:3093431-3093450 None:intergenic 40.0%
! TTTTGTTGAGGAAATGGCAG+TGG + chr1_1:3093461-3093480 None:intergenic 40.0%
! TTCATCCCAATCGGAGATTT+TGG - chr1_1:3093623-3093642 Msa0001380:intron 40.0%
! TCATCCCAATCGGAGATTTT+GGG - chr1_1:3093624-3093643 Msa0001380:intron 40.0%
GCAGAGAATCGAAGATGAAA+AGG - chr1_1:3093836-3093855 Msa0001380:CDS 40.0%
!! CGATTTCAGATTTTAGGGGT+TGG - chr1_1:3093884-3093903 Msa0001380:CDS 40.0%
TCCTACAAAGTACACAGAGA+AGG + chr1_1:3093931-3093950 None:intergenic 40.0%
TACCTCCTTCCCATATCATT+CGG + chr1_1:3094023-3094042 None:intergenic 40.0%
! GCTTGAGTGCATTGATGGTA+AGG + chr1_1:3087707-3087726 None:intergenic 45.0%
AGCAGCAACATGATGTGGTT+TGG + chr1_1:3087753-3087772 None:intergenic 45.0%
AAACCACATCATGTTGCTGC+TGG - chr1_1:3087752-3087771 Msa0001380:three_prime_UTR 45.0%
CATGTGTAGTAAGTAGGTGC+AGG - chr1_1:3088160-3088179 Msa0001380:three_prime_UTR 45.0%
! CTTTGAAGAACAGGAGGTTG+TGG + chr1_1:3088415-3088434 None:intergenic 45.0%
! GGAACACTTTGAAGAACAGG+AGG + chr1_1:3088421-3088440 None:intergenic 45.0%
! GGTGGAACACTTTGAAGAAC+AGG + chr1_1:3088424-3088443 None:intergenic 45.0%
GGGACAGTACCATAACATCT+GGG + chr1_1:3088525-3088544 None:intergenic 45.0%
AGGGACAGTACCATAACATC+TGG + chr1_1:3088526-3088545 None:intergenic 45.0%
!! AGTTAAGGATGGTGCTACTG+AGG - chr1_1:3088646-3088665 Msa0001380:intron 45.0%
TCTGATGAAACTGGTGAAGG+TGG - chr1_1:3088743-3088762 Msa0001380:intron 45.0%
! TCTTTGTTGTGGAGAGGAAG+GGG + chr1_1:3088797-3088816 None:intergenic 45.0%
TATAGGGGCAAGCTGTGATT+TGG - chr1_1:3088949-3088968 Msa0001380:intron 45.0%
CATGGAGTGTGTATGCTTTG+TGG - chr1_1:3088997-3089016 Msa0001380:intron 45.0%
!! CTTTGACTTGATAGGTAGCG+TGG + chr1_1:3089374-3089393 None:intergenic 45.0%
!! ACAACTCATGACGTTGGTTC+TGG + chr1_1:3089771-3089790 None:intergenic 45.0%
AAGTAGGATACGCGGGTAAT+TGG + chr1_1:3089851-3089870 None:intergenic 45.0%
!! TACCCGCGTATCCTACTTTT+TGG - chr1_1:3089853-3089872 Msa0001380:intron 45.0%
TAGGGTGAATACGATGGAGA+AGG - chr1_1:3090228-3090247 Msa0001380:intron 45.0%
AGGGTGAATACGATGGAGAA+GGG - chr1_1:3090229-3090248 Msa0001380:intron 45.0%
!! CAAGTTGGTCCATGTATACG+TGG - chr1_1:3090334-3090353 Msa0001380:intron 45.0%
! GGTGAAACGTTTGGAGTTGA+CGG - chr1_1:3090404-3090423 Msa0001380:intron 45.0%
! AAACGTTTGGAGTTGACGGA+AGG - chr1_1:3090408-3090427 Msa0001380:intron 45.0%
GACTTGATGCAATTGACGGA+AGG - chr1_1:3090556-3090575 Msa0001380:intron 45.0%
TGAGAATAGGCATGGCAATG+GGG - chr1_1:3090719-3090738 Msa0001380:intron 45.0%
!! CGGGCTAGTATATGAGAATC+GGG + chr1_1:3090782-3090801 None:intergenic 45.0%
GTTCAATTTCTCATCCCCGT+TGG + chr1_1:3090820-3090839 None:intergenic 45.0%
GGGATGGGTAACGAGTATAT+AGG + chr1_1:3091138-3091157 None:intergenic 45.0%
TCAAAACACGGGTATGGGAT+GGG + chr1_1:3091153-3091172 None:intergenic 45.0%
TTCAAAACACGGGTATGGGA+TGG + chr1_1:3091154-3091173 None:intergenic 45.0%
CCGATTTCAAAACACGGGTA+TGG + chr1_1:3091159-3091178 None:intergenic 45.0%
CTGGGTTTGGGTATGAGTTT+GGG + chr1_1:3091188-3091207 None:intergenic 45.0%
ACTGGGTTTGGGTATGAGTT+TGG + chr1_1:3091189-3091208 None:intergenic 45.0%
TACCCAAACCCAGTCAAAAC+GGG - chr1_1:3091195-3091214 Msa0001380:intron 45.0%
! CCGTCAAATTGGGTTTGGTT+TGG - chr1_1:3091224-3091243 Msa0001380:intron 45.0%
!! CAAATTGGGTTTGGTTTGGG+TGG - chr1_1:3091228-3091247 Msa0001380:intron 45.0%
!! TTGGTTTGGGTGGGTAACTA+CGG - chr1_1:3091238-3091257 Msa0001380:intron 45.0%
! GATGATGGTGACAAAGAGAG+TGG - chr1_1:3092137-3092156 Msa0001380:three_prime_UTR 45.0%
GAGAAGAGAGATACTAAGGG+TGG - chr1_1:3092244-3092263 Msa0001380:exon 45.0%
TCAAACCCAATCAAATGCGG+GGG - chr1_1:3092506-3092525 Msa0001380:CDS 45.0%
! GTTTTCCCCCGCATTTGATT+GGG + chr1_1:3092514-3092533 None:intergenic 45.0%
! AGTTTTCCCCCGCATTTGAT+TGG + chr1_1:3092515-3092534 None:intergenic 45.0%
CGGGGGAAAACTCGTTAAAT+CGG - chr1_1:3092523-3092542 Msa0001380:CDS 45.0%
!! TCGGTTTGGACGAATATCCA+CGG - chr1_1:3092548-3092567 Msa0001380:CDS 45.0%
GAGTTCAGCCAAGTTTGACT+CGG + chr1_1:3092709-3092728 None:intergenic 45.0%
GACAGTCATTAAGTGGGTCA+AGG + chr1_1:3093112-3093131 None:intergenic 45.0%
! GAAGGTCTTGATGGATGTTC+AGG + chr1_1:3093304-3093323 None:intergenic 45.0%
! CGGTTTGGAATGGAAGAAGA+AGG + chr1_1:3093322-3093341 None:intergenic 45.0%
ATCTTCCCTTTAGGTCCCAT+TGG - chr1_1:3093403-3093422 Msa0001380:intron 45.0%
GATATTCTTGATGCTTGGGC+AGG + chr1_1:3093432-3093451 None:intergenic 45.0%
CAGCAGTTGTTCATCCCAAT+CGG - chr1_1:3093614-3093633 Msa0001380:intron 45.0%
TGGTCCCAAAATCTCCGATT+GGG + chr1_1:3093631-3093650 None:intergenic 45.0%
TTGGTCCCAAAATCTCCGAT+TGG + chr1_1:3093632-3093651 None:intergenic 45.0%
TCATCTTCGATTCTCTGCGT+CGG + chr1_1:3093834-3093853 None:intergenic 45.0%
!! AGATTTTAGGGGTTGGGTGT+GGG - chr1_1:3093891-3093910 Msa0001380:CDS 45.0%
GCCTTCTCTGTGTACTTTGT+AGG - chr1_1:3093927-3093946 Msa0001380:CDS 45.0%
TTCCGAATGATATGGGAAGG+AGG - chr1_1:3094018-3094037 Msa0001380:intron 45.0%
!!! GTTTAAAATATATATATATA+TGG + chr1_1:3088590-3088609 None:intergenic 5.0%
!! TAAGAAATTAAATAAATTAA+AGG - chr1_1:3091459-3091478 Msa0001380:intron 5.0%
GTACCAGCAGCAACATGATG+TGG + chr1_1:3087758-3087777 None:intergenic 50.0%
AGTAAGTAGGTGCAGGTGCA+TGG - chr1_1:3088167-3088186 Msa0001380:three_prime_UTR 50.0%
GCAGAAATTGGGCCAGAAGA+AGG + chr1_1:3088490-3088509 None:intergenic 50.0%
CTGCTCATCTTCGTGTAGCA+TGG - chr1_1:3089101-3089120 Msa0001380:intron 50.0%
CTTGAGCAGCTCATGTCTTC+AGG - chr1_1:3089331-3089350 Msa0001380:intron 50.0%
TAGGATACGCGGGTAATTGG+AGG + chr1_1:3089848-3089867 None:intergenic 50.0%
ATGAGAATCGGGTATGGGGA+CGG + chr1_1:3090771-3090790 None:intergenic 50.0%
TTCTCATCCCCGTTGGGTAT+GGG + chr1_1:3090813-3090832 None:intergenic 50.0%
TTTCTCATCCCCGTTGGGTA+TGG + chr1_1:3090814-3090833 None:intergenic 50.0%
TTCAATGCGGGGATGGGTAT+GGG + chr1_1:3090879-3090898 None:intergenic 50.0%
ATTCAATGCGGGGATGGGTA+TGG + chr1_1:3090880-3090899 None:intergenic 50.0%
! GACGGGTTTGGGTATGAGTT+CGG - chr1_1:3091104-3091123 Msa0001380:intron 50.0%
ACGGGTTTGGGTATGAGTTC+GGG - chr1_1:3091105-3091124 Msa0001380:intron 50.0%
TTTGGGTATGAGTTCGGGGT+GGG - chr1_1:3091110-3091129 Msa0001380:intron 50.0%
ACCCAAACCCAGTCAAAACG+GGG - chr1_1:3091196-3091215 Msa0001380:intron 50.0%
!!! TCCCCGTTTTGACTGGGTTT+GGG + chr1_1:3091200-3091219 None:intergenic 50.0%
!!! TTCCCCGTTTTGACTGGGTT+TGG + chr1_1:3091201-3091220 None:intergenic 50.0%
!!! GGGTTTTCCCCGTTTTGACT+GGG + chr1_1:3091206-3091225 None:intergenic 50.0%
ACGGGGAAAACCCGTCAAAT+TGG - chr1_1:3091213-3091232 Msa0001380:intron 50.0%
CGGGGAAAACCCGTCAAATT+GGG - chr1_1:3091214-3091233 Msa0001380:intron 50.0%
! TGGTTTGGGTGGGTAACTAC+GGG - chr1_1:3091239-3091258 Msa0001380:intron 50.0%
GATACTAAGGGTGGGAGATG+TGG - chr1_1:3092253-3092272 Msa0001380:exon 50.0%
! CGGTTTGGACGAATATCCAC+GGG - chr1_1:3092549-3092568 Msa0001380:CDS 50.0%
GAGTCGAACCGAGTCAAACT+TGG - chr1_1:3092698-3092717 Msa0001380:CDS 50.0%
CGATTGGGATGAACAACTGC+TGG + chr1_1:3093616-3093635 None:intergenic 50.0%
! ACAATCGGCGCCGGAAAATT+CGG + chr1_1:3093687-3093706 None:intergenic 50.0%
CTCACACAACAATGCTGGAG+CGG + chr1_1:3093809-3093828 None:intergenic 50.0%
!! CAGATTTTAGGGGTTGGGTG+TGG - chr1_1:3093890-3093909 Msa0001380:CDS 50.0%
GAATAGGCATGGCAATGGGG+CGG - chr1_1:3090722-3090741 Msa0001380:intron 55.0%
AATAGGCATGGCAATGGGGC+GGG - chr1_1:3090723-3090742 Msa0001380:intron 55.0%
TGAGAATCGGGTATGGGGAC+GGG + chr1_1:3090770-3090789 None:intergenic 55.0%
TTGGGTATGGGTGGGGTAAC+GGG + chr1_1:3090801-3090820 None:intergenic 55.0%
GTTGGGTATGGGTGGGGTAA+CGG + chr1_1:3090802-3090821 None:intergenic 55.0%
GTTACCCCACCCATACCCAA+CGG - chr1_1:3090801-3090820 Msa0001380:intron 55.0%
TTACCCCACCCATACCCAAC+GGG - chr1_1:3090802-3090821 Msa0001380:intron 55.0%
TCAATGCGGGGATGGGTATG+GGG + chr1_1:3090878-3090897 None:intergenic 55.0%
! TTCTGCATTCGGGACGGGTT+TGG - chr1_1:3091092-3091111 Msa0001380:intron 55.0%
! TCTGCATTCGGGACGGGTTT+GGG - chr1_1:3091093-3091112 Msa0001380:intron 55.0%
CGGGTTTGGGTATGAGTTCG+GGG - chr1_1:3091106-3091125 Msa0001380:intron 55.0%
GTTTGGGTATGAGTTCGGGG+TGG - chr1_1:3091109-3091128 Msa0001380:intron 55.0%
!! CGGGTTTTCCCCGTTTTGAC+TGG + chr1_1:3091207-3091226 None:intergenic 55.0%
TGGGTGGGTAACTACGGGTA+TGG - chr1_1:3091244-3091263 Msa0001380:intron 55.0%
GGGTGGGTAACTACGGGTAT+GGG - chr1_1:3091245-3091264 Msa0001380:intron 55.0%
CTAAGGGTGGGAGATGTGGA+AGG - chr1_1:3092257-3092276 Msa0001380:exon 55.0%
GGGCACCAATGGGACCTAAA+GGG + chr1_1:3093411-3093430 None:intergenic 55.0%
! AGGGCACCAATGGGACCTAA+AGG + chr1_1:3093412-3093431 None:intergenic 55.0%
GGTGAGGAAGAGACAGAGGA+AGG - chr1_1:3093725-3093744 Msa0001380:intron 55.0%
GGAATGTGCGCTGCATCTGA+CGG - chr1_1:3093763-3093782 Msa0001380:intron 55.0%
ACAATGCTGGAGCGGTGTCT+CGG + chr1_1:3093801-3093820 None:intergenic 55.0%
CGCTCCAGCATTGTTGTGTG+AGG - chr1_1:3093807-3093826 Msa0001380:CDS 55.0%
CGGACCTCACACAACAATGC+TGG + chr1_1:3093814-3093833 None:intergenic 55.0%
ATAGGCATGGCAATGGGGCG+GGG - chr1_1:3090724-3090743 Msa0001380:intron 60.0%
GAGAATCGGGTATGGGGACG+GGG + chr1_1:3090769-3090788 None:intergenic 60.0%
TACCCCACCCATACCCAACG+GGG - chr1_1:3090803-3090822 Msa0001380:intron 60.0%
ATCCCCGTTGGGTATGGGTG+GGG + chr1_1:3090808-3090827 None:intergenic 60.0%
CATCCCCGTTGGGTATGGGT+GGG + chr1_1:3090809-3090828 None:intergenic 60.0%
TCATCCCCGTTGGGTATGGG+TGG + chr1_1:3090810-3090829 None:intergenic 60.0%
ATACCCGAACCCGTCGGTGA+CGG + chr1_1:3090850-3090869 None:intergenic 60.0%
! TGCTTGGGCAGGGCACCAAT+GGG + chr1_1:3093421-3093440 None:intergenic 60.0%
! ATGCTTGGGCAGGGCACCAA+TGG + chr1_1:3093422-3093441 None:intergenic 60.0%
GTCGTCCTCCGTGGCACAAT+CGG + chr1_1:3093702-3093721 None:intergenic 60.0%
CGACGGTGAGGAAGAGACAG+AGG - chr1_1:3093721-3093740 Msa0001380:intron 60.0%
!! AGAGGAAGGTGAGAGTGCCG+CGG - chr1_1:3093739-3093758 Msa0001380:intron 60.0%
TGCGCTGCATCTGACGGAGA+CGG - chr1_1:3093769-3093788 Msa0001380:intron 60.0%
AACCCCATCCCCGTCACCGA+CGG - chr1_1:3090837-3090856 Msa0001380:intron 65.0%
!! AACCCGTCGGTGACGGGGAT+GGG + chr1_1:3090843-3090862 None:intergenic 65.0%
! ATCCCCGTCACCGACGGGTT+CGG - chr1_1:3090843-3090862 Msa0001380:intron 65.0%
TACCCGAACCCGTCGGTGAC+GGG + chr1_1:3090849-3090868 None:intergenic 65.0%
ATGCGGGGATGGGTATGGGG+CGG + chr1_1:3090875-3090894 None:intergenic 65.0%
!! TTCCGGCGCCGATTGTGCCA+CGG - chr1_1:3093691-3093710 Msa0001380:intron 65.0%
TGTGCCACGGAGGACGACGA+CGG - chr1_1:3093704-3093723 Msa0001380:intron 65.0%
ATGCAGCGCACATTCCGCCG+CGG + chr1_1:3093759-3093778 None:intergenic 65.0%
AGGGGTTGGGTGTGGGAGCT+TGG - chr1_1:3093898-3093917 Msa0001380:CDS 65.0%
GCATGGCAATGGGGCGGGGT+GGG - chr1_1:3090728-3090747 Msa0001380:intron 70.0%
CATGGCAATGGGGCGGGGTG+GGG - chr1_1:3090729-3090748 Msa0001380:intron 70.0%
ACCCCATCCCCGTCACCGAC+GGG - chr1_1:3090838-3090857 Msa0001380:intron 70.0%
!! ACCCGTCGGTGACGGGGATG+GGG + chr1_1:3090842-3090861 None:intergenic 70.0%
!! GAACCCGTCGGTGACGGGGA+TGG + chr1_1:3090844-3090863 None:intergenic 70.0%
! TCCCCGTCACCGACGGGTTC+GGG - chr1_1:3090844-3090863 Msa0001380:intron 70.0%
ACCCGAACCCGTCGGTGACG+GGG + chr1_1:3090848-3090867 None:intergenic 70.0%
GCGGGGATACCCGAACCCGT+CGG + chr1_1:3090856-3090875 None:intergenic 70.0%
TGCGGGGATGGGTATGGGGC+GGG + chr1_1:3090874-3090893 None:intergenic 70.0%
CTCCGTGGCACAATCGGCGC+CGG + chr1_1:3093696-3093715 None:intergenic 70.0%
CTCACCGTCGTCGTCCTCCG+TGG + chr1_1:3093711-3093730 None:intergenic 70.0%
CACGGAGGACGACGACGGTG+AGG - chr1_1:3093709-3093728 Msa0001380:intron 70.0%
!! GGAAGGTGAGAGTGCCGCGG+CGG - chr1_1:3093742-3093761 Msa0001380:intron 70.0%
GGCATGGCAATGGGGCGGGG+TGG - chr1_1:3090727-3090746 Msa0001380:intron 75.0%
GCAATGGGGCGGGGTGGGGA+CGG - chr1_1:3090733-3090752 Msa0001380:intron 75.0%
CAATGGGGCGGGGTGGGGAC+GGG - chr1_1:3090734-3090753 Msa0001380:intron 75.0%
GCGGGGATGGGTATGGGGCG+GGG + chr1_1:3090873-3090892 None:intergenic 75.0%
!! CGGCGCCGATTGTGCCACGG+AGG - chr1_1:3093694-3093713 Msa0001380:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3087404 3094267 3087404 ID=Msa0001380;Name=Msa0001380
chr1_1 mRNA 3087404 3094267 3087404 ID=Msa0001380-mRNA-1;Parent=Msa0001380;Name=Msa0001380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=143|1|0.8|1|0.5|0.4|5|1433|395
chr1_1 exon 3087404 3088364 3087404 ID=Msa0001380-mRNA-1:exon:804;Parent=Msa0001380-mRNA-1
chr1_1 exon 3091788 3093039 3091788 ID=Msa0001380-mRNA-1:exon:803;Parent=Msa0001380-mRNA-1
chr1_1 exon 3093137 3093309 3093137 ID=Msa0001380-mRNA-1:exon:802;Parent=Msa0001380-mRNA-1
chr1_1 exon 3093775 3094009 3093775 ID=Msa0001380-mRNA-1:exon:801;Parent=Msa0001380-mRNA-1
chr1_1 exon 3094125 3094267 3094125 ID=Msa0001380-mRNA-1:exon:800;Parent=Msa0001380-mRNA-1
chr1_1 five_prime_UTR 3094125 3094267 3094125 ID=Msa0001380-mRNA-1:five_prime_utr;Parent=Msa0001380-mRNA-1
chr1_1 CDS 3093775 3094009 3093775 ID=Msa0001380-mRNA-1:cds;Parent=Msa0001380-mRNA-1
chr1_1 CDS 3093137 3093309 3093137 ID=Msa0001380-mRNA-1:cds;Parent=Msa0001380-mRNA-1
chr1_1 CDS 3092260 3093039 3092260 ID=Msa0001380-mRNA-1:cds;Parent=Msa0001380-mRNA-1
chr1_1 three_prime_UTR 3091788 3092259 3091788 ID=Msa0001380-mRNA-1:three_prime_utr;Parent=Msa0001380-mRNA-1
chr1_1 three_prime_UTR 3087404 3088364 3087404 ID=Msa0001380-mRNA-1:three_prime_utr;Parent=Msa0001380-mRNA-1
Gene Sequence

>Msa0001380

ATGATGTCTAGTAGCAACGGTAGCTGTGCAAATGCTTCAAATCCTTACCATCAATGCACTCAAGCTTGTTCCCAAAAGACAAAGGGAACCAAACCACATCATGTTGCTGCTGGTACTGCAAGTAATAGCAATAATAGAAAGGTTATTAATGGAGGTGAAAGACGTACTTATGCTTCTTCTTGTCCTAAATCATCCAATCCTTATCATAAGTGTGATGCCAATTGCAACAATTCAGGTGCCACTCCTCATTCCAAGATTGATCATAGGAAGAAGGTGGGTTCTAAGCCACAACCTCCTGTTCTTCAAAGTGTTCCACCAACAAAACCACATTATTCTCATAACAAAAACGATGAGATCATTCCTTCTTCTGGCCCAATTTCTGCTCAATTACACATCCCAGATGTTATGCAGCCTAAAGATCAAGTTAAGGATGGTGCTACTGAGGTCCTCCCCAATAAAACTGAAACAAAGAAAGAGGACAAAGTCGCTGCTTCTCATGAAATCGTTCCAGTAACCAATTCTGATGAAACTGGTGAAGGTGGTTCCAAAGATTTTAGTTTCTCTGGCAATCCCCTTCCTCTCCACAACAAAGAAATAGATACTAGTAGCGAAGGAGAAGCAGATAGTGTCAGTGTTGTATCTGAATCCCGTGTTTCAATTGGAAAATACAATGTCAAAGAAAGTTTTGGTTCCATCCTACAAACAATACTTGACAAGTATGGTGATATAGGGGCAAGCTGTGATTTGGAATCAGTTGTAATGAGGTCATATTACATGGAGTGTGTATGCTTTGTGGTCCAAGAATTACAATCTTCTTCCGATTCAATAAGTAAGACCAAAGTGAGTGAATTGTTGGATATTGTTAAGGATGTTGAATCTGCTCATCTTCGTGTAGCATGGTTGCGTAACACACTCGATGAAATTGTTGAAAATATTGAATTGATTAGTCACCATCAGGATATGGAAATGGAAAAGGCTAACTATGATCGTGAAATGGAATCATTGAGAGAACAGCTAGAATCAGAGTTGGAAACATTGGCTCAGAAAGAACAAGAGGTTGCTGATATTAATATCCGAATTCCTGAAATCAGAGATCGTTTGAGCGAGCTTGAGCAGCTCATGTCTTCAGGATTAGTAGATGATCAAACCACGCTACCTATCAAGTCAAAGATAGATCAACTATTATAA
Protein sequence

>Msa0001380

MMSSSNGSCANASNPYHQCTQACSQKTKGTKPHHVAAGTASNSNNRKVINGGERRTYASSCPKSSNPYHKCDANCNNSGATPHSKIDHRKKVGSKPQPPVLQSVPPTKPHYSHNKNDEIIPSSGPISAQLHIPDVMQPKDQVKDGATEVLPNKTETKKEDKVAASHEIVPVTNSDETGEGGSKDFSFSGNPLPLHNKEIDTSSEGEADSVSVVSESRVSIGKYNVKESFGSILQTILDKYGDIGASCDLESVVMRSYYMECVCFVVQELQSSSDSISKTKVSELLDIVKDVESAHLRVAWLRNTLDEIVENIELISHHQDMEMEKANYDREMESLREQLESELETLAQKEQEVADINIRIPEIRDRLSELEQLMSSGLVDDQTTLPIKSKIDQLL*