AlfalfaGEDB | Msa0487780

M. sativa cultivar zhongmu-4 / Msa0487780

KEGG: -
GO: -
PFAM: PF10250.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0487780	XP_024635513.1	89.929	566	47	4	1	560	1	562	0.0	989

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0487780	sp\|Q8H1E6\|OFUT9_ARATH	61.404	570	196	6	1	551	1	565	0.0	703

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0487780	A0A396IHR2	89.929	566	47	4	1	560	1	562	0.0	989

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa0487780	0.820440	6.851384e-53	-8.615850e-47
Msa0003220	Msa0487780	0.807369	5.228236e-50	-8.615850e-47
Msa0008220	Msa0487780	0.803283	3.754321e-49	-8.615850e-47
Msa0010770	Msa0487780	0.811572	6.546074e-51	-8.615850e-47
Msa0012940	Msa0487780	0.825082	5.688824e-54	-8.615850e-47
Msa0014570	Msa0487780	0.821505	3.896281e-53	-8.615850e-47
Msa0022750	Msa0487780	-0.829419	5.201376e-55	-8.615850e-47
Msa0027390	Msa0487780	0.843806	1.116990e-58	-8.615850e-47
Msa0031820	Msa0487780	0.806597	7.615181e-50	-8.615850e-47
Msa0032320	Msa0487780	0.801550	8.539862e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0487780	MtrunA17_Chr3g0077321	89.929	566	47	4	1	560	1	562	0.0	989
Msa0487780	MtrunA17_Chr4g0043911	53.091	550	220	8	6	543	25	548	0.0	592
Msa0487780	MtrunA17_Chr1g0160781	53.551	521	211	8	32	542	47	546	0.0	574
Msa0487780	MtrunA17_Chr5g0424241	52.663	507	217	6	48	544	68	561	0.0	530
Msa0487780	MtrunA17_Chr4g0056061	38.085	449	246	12	106	544	65	491	1.89e-87	280
Msa0487780	MtrunA17_Chr5g0399311	37.615	436	240	11	119	544	94	507	3.50e-86	276
Msa0487780	MtrunA17_Chr5g0412251	35.931	462	243	13	118	543	58	502	3.12e-82	265
Msa0487780	MtrunA17_Chr3g0123521	36.706	425	252	11	130	543	130	548	4.01e-81	264
Msa0487780	MtrunA17_Chr3g0143821	36.952	433	241	12	121	543	83	493	3.25e-80	262
Msa0487780	MtrunA17_Chr2g0284071	35.470	468	249	13	120	544	185	642	3.59e-79	261

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0487780	AT1G35510.1	61.404	570	196	6	1	551	1	565	0.0	703
Msa0487780	AT2G01480.1	51.730	549	232	8	6	544	28	553	0.0	581
Msa0487780	AT1G14970.1	51.434	523	223	7	32	544	53	554	0.0	561
Msa0487780	AT1G38131.1	52.767	506	209	7	52	542	67	557	0.0	535
Msa0487780	AT2G01480.2	51.172	512	217	8	6	507	28	516	0.0	531
Msa0487780	AT1G14970.2	56.000	425	168	3	129	544	20	434	2.51e-179	513
Msa0487780	AT1G38065.2	56.808	426	170	3	131	542	3	428	9.59e-177	507
Msa0487780	AT1G14970.3	56.691	411	161	2	143	544	6	408	4.39e-176	504
Msa0487780	AT1G38065.1	58.809	403	160	2	146	542	36	438	9.12e-176	505
Msa0487780	AT3G26370.1	38.118	425	246	11	130	543	138	556	3.21e-85	275

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Find 155 sgRNAs with CRISPR-Local

Find 860 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAAACCTTAGTTTA+TGG	0.135680	3_4:+6915421	None:intergenic
AAAATGAAAATGCTAACATT+GGG	0.499394	3_4:-6915575	Msa0487780:CDS
AAACAGATAGATAGATCCGA+TGG	0.645033	3_4:+6926448	None:intergenic
AAACATATTTCCCACCACTT+TGG	0.408641	3_4:+6918242	None:intergenic
AAAGCCTGGTGCAAATCGTG+TGG	0.676415	3_4:-6917208	Msa0487780:CDS
AAAGTAGTTTGATTCAAACT+TGG	0.487977	3_4:-6915451	Msa0487780:three_prime_UTR
AAATCTAAGAGCTCCAAAGT+TGG	0.561506	3_4:+6918324	None:intergenic
AAATGGATATCGCTCGTGAA+AGG	0.523973	3_4:-6917269	Msa0487780:CDS
AAATTTGGACCATGATGATT+TGG	0.331205	3_4:+6926341	None:intergenic
AACATATTTCCCACCACTTT+GGG	0.297173	3_4:+6918243	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAACAAGAAGAAGAAGA+AGG	-	chr3_4:6915146-6915165	Msa0487780:three_prime_UTR	30.0%
AAATTTGGACCATGATGATT+TGG	+	chr3_4:6915329-6915348	None:intergenic	30.0%
TGCTGGAATGTTATTGTATA+TGG	-	chr3_4:6915417-6915436	Msa0487780:three_prime_UTR	30.0%
GCTGGAATGTTATTGTATAT+GGG	-	chr3_4:6915418-6915437	Msa0487780:three_prime_UTR	30.0%
CAAAGATTATGAAAGAGTTG+AGG	+	chr3_4:6915526-6915545	None:intergenic	30.0%
CTCAACTCTTTCATAATCTT+TGG	-	chr3_4:6915524-6915543	Msa0487780:three_prime_UTR	30.0%
AGTTGAATTATTGGAAGAGA+AGG	+	chr3_4:6915572-6915591	None:intergenic	30.0%
TGAGATCTAAGTCCATTAAA+TGG	-	chr3_4:6915767-6915786	Msa0487780:intron	30.0%
AACACAAGAACACCATTTAA+TGG	+	chr3_4:6915782-6915801	None:intergenic	30.0%
TGATACAGTTAATGAAAGCT+TGG	-	chr3_4:6915866-6915885	Msa0487780:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	6914990	6926699	6914990	ID=Msa0487780;Name=Msa0487780
chr3_4	mRNA	6914990	6926699	6914990	ID=Msa0487780-mRNA-1;Parent=Msa0487780;Name=Msa0487780-mRNA-1;_AED=0.16;_eAED=0.16;_QI=260\|0.66\|0.8\|0.9\|0.66\|0.8\|10\|567\|560
chr3_4	exon	6914990	6915731	6914990	ID=Msa0487780-mRNA-1:exon:2452;Parent=Msa0487780-mRNA-1
chr3_4	exon	6916651	6916841	6916651	ID=Msa0487780-mRNA-1:exon:2451;Parent=Msa0487780-mRNA-1
chr3_4	exon	6916927	6917094	6916927	ID=Msa0487780-mRNA-1:exon:2450;Parent=Msa0487780-mRNA-1
chr3_4	exon	6917179	6917346	6917179	ID=Msa0487780-mRNA-1:exon:2449;Parent=Msa0487780-mRNA-1
chr3_4	exon	6918219	6918423	6918219	ID=Msa0487780-mRNA-1:exon:2448;Parent=Msa0487780-mRNA-1
chr3_4	exon	6920746	6920943	6920746	ID=Msa0487780-mRNA-1:exon:2447;Parent=Msa0487780-mRNA-1
chr3_4	exon	6921173	6921258	6921173	ID=Msa0487780-mRNA-1:exon:2446;Parent=Msa0487780-mRNA-1
chr3_4	exon	6925432	6925499	6925432	ID=Msa0487780-mRNA-1:exon:2445;Parent=Msa0487780-mRNA-1
chr3_4	exon	6925743	6925815	6925743	ID=Msa0487780-mRNA-1:exon:2444;Parent=Msa0487780-mRNA-1
chr3_4	exon	6926089	6926699	6926089	ID=Msa0487780-mRNA-1:exon:2443;Parent=Msa0487780-mRNA-1
chr3_4	five_prime_UTR	6926440	6926699	6926440	ID=Msa0487780-mRNA-1:five_prime_utr;Parent=Msa0487780-mRNA-1
chr3_4	CDS	6926089	6926439	6926089	ID=Msa0487780-mRNA-1:cds;Parent=Msa0487780-mRNA-1
chr3_4	CDS	6925743	6925815	6925743	ID=Msa0487780-mRNA-1:cds;Parent=Msa0487780-mRNA-1
chr3_4	CDS	6925432	6925499	6925432	ID=Msa0487780-mRNA-1:cds;Parent=Msa0487780-mRNA-1
chr3_4	CDS	6921173	6921258	6921173	ID=Msa0487780-mRNA-1:cds;Parent=Msa0487780-mRNA-1
chr3_4	CDS	6920746	6920943	6920746	ID=Msa0487780-mRNA-1:cds;Parent=Msa0487780-mRNA-1
chr3_4	CDS	6918219	6918423	6918219	ID=Msa0487780-mRNA-1:cds;Parent=Msa0487780-mRNA-1
chr3_4	CDS	6917179	6917346	6917179	ID=Msa0487780-mRNA-1:cds;Parent=Msa0487780-mRNA-1
chr3_4	CDS	6916927	6917094	6916927	ID=Msa0487780-mRNA-1:cds;Parent=Msa0487780-mRNA-1
chr3_4	CDS	6916651	6916841	6916651	ID=Msa0487780-mRNA-1:cds;Parent=Msa0487780-mRNA-1
chr3_4	CDS	6915557	6915731	6915557	ID=Msa0487780-mRNA-1:cds;Parent=Msa0487780-mRNA-1
chr3_4	three_prime_UTR	6914990	6915556	6914990	ID=Msa0487780-mRNA-1:three_prime_utr;Parent=Msa0487780-mRNA-1

Gene Sequence

>Msa0487780

ATGCATGGGTACAGCCGCTTGGGAAGGAGTAAGAGCGGCGGCCTCGGTGGCGTCGGTGCTGGAAAATCCTCTTCTTCCAAATCATCATGGTCCAAATTTGTATATCTTGTTATGTCAGCTATTTTCAGAAGAAGAGGGTTATTGCTATTTGCACCCCTATTATATATTGCTGGAATGTTATTGTATATGGGTTCTTTAAGCTTTGATATTGTTCTTGTTTCCAAACACCATCGTCTTCCTCCTCCTCCTCCTCCTGGTTCTCTTTATAGAAGTCCTCAACTCTTTCATAATCTTTGGCCTTTCATGCTAAATGACTCCTCCTTCTCTTCCAATAATTCAACTTCTCTCAATTTAATGAAAGCTTGGAGTGTGAAAGAGGATAGACAATGGAAGCCATGTGCTAATAAAACTCTTCCTCAAATAGAATTTCCCAAGTCAAATGGTTACCTTATAATTGAAGCAAATGGCGGGCTGAATCAGCAACGCTTGTCGCACTATTCACTTGGAACAGAAGATCAATCGAATATCCTGAACGTCGGAAGTCATCTTAAACTTACTTATGAATGCAAGACTCATAACCATTTCGGTGACATTTTCGATGAAAATTTCTTCATACAGTCACTTGGGAAGCATGTACATGTGGTAAGAGAACTTCCAGATGACATACTTCAACAGTTTGACAATAACATAAGTAACATTGTCAATCTTAGAGTAAAAGCTTGGTCTAGTCCAGCTCACTATCTTAAGAAGGTTCTTCCTCAGCTTTTGGAAATGAGGGCTGTTCGTATTGCACCTTTCTCCAACAGATTAGCTCAATCAGTACCCTCAAAAATCCAAGGGCTTAGGTGCTTTGCCAACTTTGGAGCTCTTAGATTTTCTGAACCTATTAGAACGCTTGCAGAAAGCATGGTTGATCGGATGGTGAAGCATAGTTCCCAAAGTGGTGGGAAATATGTTTCAGTGCATCTTCGTTTTGAGGAGGATATGGTTGCATTTTCATGTTGTGAGTATGACGGTGGGGCAGAGGAGAAACGTGAAATGGATATCGCTCGTGAAAGGAGTTGGCGAGGTAAATTCAAAAGAAAGCATAGGATAATAAAGCCTGGTGCAAATCGTGTGGATGGAAGATGTCCTTTGACTCCGTTGGAGGTAGGGATGATGCTTAGAGGCATGGGCTTCGATAATACCACCTTAGTATATGTTGCAGCTGGAAAAATTTATAAAGAACAAAAGTACATGGCACCACTTAAACAGATGTTTCCACGATTACAAACAAAAGATACACTGGCAACTCCAGAAGAGCTTGCTCAATTTAAGGGCCACTCATCTAGGTTGGCTGCTCTTGATTATACTGTTTGTCTTCATAGTGAAGTATTTGTTACAACTCAAGGTGGAAATTTTCCTCACTTCTTGATGGGTCACAGGAGATATATGTATGGTGGGCATTCAAAGACAATTAAACCTGATAAAAGAAGATTGGCTCTATTATTCGATAACCCTAACATAAGATGGGAAGTATTTAAGCAACAAATGAAAGACATGCTTCGCCATAGTGATCAAAAGGGAACCGAGGTAAAAAAGGCTAGTGAATCCCTATATACTTTTCCCATGCCAGATTGCATGTGTAAACAGGTTGAACCCAAAAATGAAAATGCTAACATTGGGAAAACCATGAAATTATAA

Protein sequence

>Msa0487780

MHGYSRLGRSKSGGLGGVGAGKSSSSKSSWSKFVYLVMSAIFRRRGLLLFAPLLYIAGMLLYMGSLSFDIVLVSKHHRLPPPPPPGSLYRSPQLFHNLWPFMLNDSSFSSNNSTSLNLMKAWSVKEDRQWKPCANKTLPQIEFPKSNGYLIIEANGGLNQQRLSHYSLGTEDQSNILNVGSHLKLTYECKTHNHFGDIFDENFFIQSLGKHVHVVRELPDDILQQFDNNISNIVNLRVKAWSSPAHYLKKVLPQLLEMRAVRIAPFSNRLAQSVPSKIQGLRCFANFGALRFSEPIRTLAESMVDRMVKHSSQSGGKYVSVHLRFEEDMVAFSCCEYDGGAEEKREMDIARERSWRGKFKRKHRIIKPGANRVDGRCPLTPLEVGMMLRGMGFDNTTLVYVAAGKIYKEQKYMAPLKQMFPRLQTKDTLATPEELAQFKGHSSRLAALDYTVCLHSEVFVTTQGGNFPHFLMGHRRYMYGGHSKTIKPDKRRLALLFDNPNIRWEVFKQQMKDMLRHSDQKGTEVKKASESLYTFPMPDCMCKQVEPKNENANIGKTMKL*