Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128320 | sp|P93033|FUM1_ARATH | 82.222 | 495 | 64 | 3 | 1 | 474 | 1 | 492 | 0.0 | 816 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128320 | G7IEJ2 | 96.130 | 491 | 2 | 1 | 1 | 474 | 1 | 491 | 0.0 | 967 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034200 | Msa0128320 | 0.872142 | 3.989670e-67 | -8.615850e-47 |
| Msa0051460 | Msa0128320 | -0.806539 | 7.833578e-50 | -8.615850e-47 |
| Msa0081310 | Msa0128320 | 0.800809 | 1.210605e-48 | -8.615850e-47 |
| Msa0094940 | Msa0128320 | 0.857309 | 1.782572e-62 | -8.615850e-47 |
| Msa0128320 | Msa0189080 | 0.820663 | 6.088518e-53 | -8.615850e-47 |
| Msa0128320 | Msa0220960 | 0.809041 | 2.301631e-50 | -8.615850e-47 |
| Msa0128320 | Msa0226620 | 0.837630 | 4.642106e-57 | -8.615850e-47 |
| Msa0128320 | Msa0231290 | 0.826288 | 2.945138e-54 | -8.615850e-47 |
| Msa0128320 | Msa0260230 | 0.804120 | 2.515462e-49 | -8.615850e-47 |
| Msa0128320 | Msa0260270 | 0.856223 | 3.721082e-62 | -8.615850e-47 |
| Msa0128320 | Msa0300310 | 0.812113 | 4.991910e-51 | -8.615850e-47 |
| Msa0128320 | Msa0304270 | 0.873870 | 1.051153e-67 | -8.615850e-47 |
| Msa0128320 | Msa0304310 | 0.872694 | 2.611737e-67 | -8.615850e-47 |
| Msa0128320 | Msa0323420 | 0.812469 | 4.173103e-51 | -8.615850e-47 |
| Msa0128320 | Msa0334170 | -0.803679 | 3.107623e-49 | -8.615850e-47 |
| Msa0128320 | Msa0379850 | -0.807391 | 5.171328e-50 | -8.615850e-47 |
| Msa0128320 | Msa0401150 | 0.850291 | 1.867389e-60 | -8.615850e-47 |
| Msa0128320 | Msa0438050 | -0.804555 | 2.042211e-49 | -8.615850e-47 |
| Msa0128320 | Msa0467740 | 0.807105 | 5.945343e-50 | -8.615850e-47 |
| Msa0128320 | Msa0527900 | -0.809007 | 2.340973e-50 | -8.615850e-47 |
| Msa0128320 | Msa0543900 | -0.802533 | 5.363849e-49 | -8.615850e-47 |
| Msa0128320 | Msa0610380 | 0.803979 | 2.691251e-49 | -8.615850e-47 |
| Msa0128320 | Msa0621190 | 0.804734 | 1.874037e-49 | -8.615850e-47 |
| Msa0128320 | Msa0640380 | -0.832764 | 7.845850e-56 | -8.615850e-47 |
| Msa0128320 | Msa0679560 | -0.803360 | 3.617982e-49 | -8.615850e-47 |
| Msa0128320 | Msa0683560 | 0.826380 | 2.800348e-54 | -8.615850e-47 |
| Msa0128320 | Msa0692850 | 0.837288 | 5.677729e-57 | -8.615850e-47 |
| Msa0128320 | Msa0700370 | 0.819983 | 8.718400e-53 | -8.615850e-47 |
| Msa0128320 | Msa0807050 | -0.848961 | 4.389721e-60 | -8.615850e-47 |
| Msa0128320 | Msa0832990 | -0.847806 | 9.159867e-60 | -8.615850e-47 |
| Msa0128320 | Msa0894500 | -0.803142 | 4.013934e-49 | -8.615850e-47 |
| Msa0128320 | Msa0962190 | 0.811108 | 8.256141e-51 | -8.615850e-47 |
| Msa0128320 | Msa0996830 | 0.848854 | 4.700675e-60 | -8.615850e-47 |
| Msa0128320 | Msa0998890 | 0.821642 | 3.622346e-53 | -8.615850e-47 |
| Msa0128320 | Msa1026850 | 0.806503 | 7.968934e-50 | -8.615850e-47 |
| Msa0128320 | Msa1080790 | -0.836339 | 9.918618e-57 | -8.615850e-47 |
| Msa0128320 | Msa1118930 | -0.829943 | 3.878749e-55 | -8.615850e-47 |
| Msa0128320 | Msa1119970 | 0.821182 | 4.624892e-53 | -8.615850e-47 |
| Msa0128320 | Msa1132950 | -0.847204 | 1.340782e-59 | -8.615850e-47 |
| Msa0128320 | Msa1141250 | 0.800957 | 1.129557e-48 | -8.615850e-47 |
| Msa0128320 | Msa1185870 | 0.836681 | 8.113925e-57 | -8.615850e-47 |
| Msa0128320 | Msa1284800 | 0.812197 | 4.784768e-51 | -8.615850e-47 |
| Msa0128320 | Msa1320530 | 0.815585 | 8.572443e-52 | -8.615850e-47 |
| Msa0128320 | Msa1370630 | -0.827670 | 1.376373e-54 | -8.615850e-47 |
| Msa0128320 | Msa1377070 | -0.801522 | 8.653315e-49 | -8.615850e-47 |
| Msa0128320 | Msa1387750 | 0.806178 | 9.330035e-50 | -8.615850e-47 |
| Msa0128320 | Msa1390390 | 0.830740 | 2.476625e-55 | -8.615850e-47 |
| Msa0128320 | Msa1433900 | 0.805444 | 1.330936e-49 | -8.615850e-47 |
| Msa0128320 | Msa1445250 | -0.807681 | 4.487874e-50 | -8.615850e-47 |
| Msa0128320 | Msa1465890 | 0.819956 | 8.846579e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128320 | MtrunA17_Chr1g0195131 | 96.130 | 491 | 2 | 1 | 1 | 474 | 1 | 491 | 0.0 | 967 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0128320 | AT2G47510.1 | 82.222 | 495 | 64 | 3 | 1 | 474 | 1 | 492 | 0.0 | 816 |
| Msa0128320 | AT2G47510.2 | 82.222 | 495 | 64 | 3 | 1 | 474 | 1 | 492 | 0.0 | 816 |
| Msa0128320 | AT2G47510.3 | 82.222 | 495 | 64 | 3 | 1 | 474 | 1 | 492 | 0.0 | 816 |
| Msa0128320 | AT5G50950.2 | 83.262 | 466 | 61 | 1 | 26 | 474 | 34 | 499 | 0.0 | 811 |
| Msa0128320 | AT5G50950.1 | 79.870 | 462 | 74 | 2 | 26 | 468 | 34 | 495 | 0.0 | 761 |
| Msa0128320 | AT5G50950.4 | 82.574 | 373 | 48 | 1 | 26 | 381 | 34 | 406 | 0.0 | 645 |
| Msa0128320 | AT5G50950.3 | 85.804 | 317 | 45 | 0 | 158 | 474 | 1 | 317 | 0.0 | 567 |
Find 140 sgRNAs with CRISPR-Local
Find 424 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCAAAATCATTGGTTATT+TGG | 0.113727 | 1_3:-57988587 | None:intergenic |
| TTGTTGCCTCGTTACAAATT+TGG | 0.199666 | 1_3:-57988643 | None:intergenic |
| ATTTGTCTGTTCCAGAAAAT+TGG | 0.207895 | 1_3:+57988070 | Msa0128320:intron |
| AGAAAATAAGTTTGAGGCTT+TGG | 0.263915 | 1_3:+57986014 | Msa0128320:CDS |
| CGCCATTGAATGAAAGGGTT+TGG | 0.266223 | 1_3:-57982392 | None:intergenic |
| AAGTTCCCTCCGACAAACTA+TGG | 0.275846 | 1_3:+57982533 | Msa0128320:CDS |
| AAATGTGATTTAGGTTAATA+TGG | 0.285361 | 1_3:+57982724 | Msa0128320:intron |
| CTGATACATACGCGGCAAAA+TGG | 0.293648 | 1_3:-57985390 | None:intergenic |
| GCTAATGATATACGGTTATT+AGG | 0.304246 | 1_3:+57986250 | Msa0128320:CDS |
| TGAAAGGGTTTGGATTTAGA+TGG | 0.309027 | 1_3:-57982382 | None:intergenic |
| CCCCTCTTTGTGGGCTGTCT+TGG | 0.317320 | 1_3:-57988116 | None:intergenic |
| AGCGTACCCATTGAATGAAT+TGG | 0.327735 | 1_3:+57988553 | Msa0128320:three_prime_UTR |
| AGTGGTCCCCGTTGCGGTCT+TGG | 0.338174 | 1_3:+57986380 | Msa0128320:intron |
| CAAACTTCTCACCGCGCTTA+TGG | 0.343693 | 1_3:-57983926 | None:intergenic |
| ATTTAGGTTAATATGGAGTA+TGG | 0.344257 | 1_3:+57982731 | Msa0128320:intron |
| GACATATTGACATGGTCATT+TGG | 0.360938 | 1_3:-57983954 | None:intergenic |
| TGATTTCAGGTTTGATGTTA+AGG | 0.366792 | 1_3:+57985945 | Msa0128320:intron |
| TGTAACGAGGCAACAAATAA+AGG | 0.367958 | 1_3:+57988650 | Msa0128320:three_prime_UTR |
| GAACCAATCATTCGCTCTTT+CGG | 0.368245 | 1_3:+57982619 | Msa0128320:CDS |
| GAGTTCACCAAGACCGCAAC+GGG | 0.372182 | 1_3:-57986387 | None:intergenic |
| TTTAAAGATATAGTCAAGAT+TGG | 0.374447 | 1_3:+57985147 | Msa0128320:CDS |
| TTTGAAAAGAATTGTGTAAG+AGG | 0.374928 | 1_3:+57987808 | Msa0128320:CDS |
| TATGGTCTTGATCCTACTAT+TGG | 0.380817 | 1_3:+57982749 | Msa0128320:CDS |
| CTATTTCCCAATTCATTCAA+TGG | 0.383286 | 1_3:-57988560 | None:intergenic |
| CCAGTGTGAGGCTTTGACTA+TGG | 0.383792 | 1_3:+57986595 | Msa0128320:CDS |
| ACATACTTGCAGGAGATTAC+TGG | 0.388899 | 1_3:-57987260 | None:intergenic |
| ATCCAAACCCTTTCATTCAA+TGG | 0.394338 | 1_3:+57982390 | Msa0128320:exon |
| GAGTGTTGGTGAGGTTGATT+TGG | 0.408411 | 1_3:-57982443 | None:intergenic |
| ACATATTGACATGGTCATTT+GGG | 0.412639 | 1_3:-57983953 | None:intergenic |
| AGAGAAGAACGCGACACATT+CGG | 0.414756 | 1_3:+57982502 | Msa0128320:CDS |
| AAGTGTAGACCCCTCTTTGT+GGG | 0.417422 | 1_3:-57988125 | None:intergenic |
| TGAAGATAGCTAATGATATA+CGG | 0.418067 | 1_3:+57986242 | Msa0128320:CDS |
| GCGGCGTCGCGTACCCTGAT+TGG | 0.421476 | 1_3:+57982320 | Msa0128320:five_prime_UTR |
| CATTCTTCCTGAAAACGAAC+CGG | 0.425841 | 1_3:+57986409 | Msa0128320:CDS |
| AAAGAGCGAATGATTGGTTC+AGG | 0.426359 | 1_3:-57982616 | None:intergenic |
| TGGTTCAGGCATACGTTCAC+GGG | 0.428443 | 1_3:-57982602 | None:intergenic |
| AGCATGTAACGTCTTCAAGC+TGG | 0.430909 | 1_3:-57984178 | None:intergenic |
| ACTCTCGGACAGGAGTTTAG+TGG | 0.432184 | 1_3:+57985201 | Msa0128320:CDS |
| ACAGGCATAATACTGCTTCC+CGG | 0.438760 | 1_3:-57986428 | None:intergenic |
| GCGTACCCATTGAATGAATT+GGG | 0.440568 | 1_3:+57988554 | Msa0128320:three_prime_UTR |
| CAAAGAGGGGTCTACACTTA+AGG | 0.440605 | 1_3:+57988129 | Msa0128320:CDS |
| TATTTCCCAATTCATTCAAT+GGG | 0.441199 | 1_3:-57988559 | None:intergenic |
| GAGGAAACTTACTGGGTTCA+AGG | 0.441383 | 1_3:-57987995 | None:intergenic |
| AACAGAGCATCAGAGATTCT+TGG | 0.449221 | 1_3:+57983903 | Msa0128320:CDS |
| TCTTTGCAGAATTTCGATAT+CGG | 0.450065 | 1_3:+57982574 | Msa0128320:CDS |
| AGGTTGATTTGGTTGATAAA+CGG | 0.454648 | 1_3:-57982432 | None:intergenic |
| TTTGTCGGAGGGAACTTGAA+TGG | 0.458116 | 1_3:-57982527 | None:intergenic |
| TTGTGCTCCCCATAGTTTGT+CGG | 0.460721 | 1_3:-57982542 | None:intergenic |
| AACTGCGAAAATGACCAATC+AGG | 0.462669 | 1_3:-57982334 | None:intergenic |
| AACAGCAGAAAATAAGTTTG+AGG | 0.463670 | 1_3:+57986008 | Msa0128320:CDS |
| GGTGGTACCGCTGTAGGGAC+TGG | 0.464029 | 1_3:+57985508 | Msa0128320:CDS |
| ACTAAGAAAGTCAAAATCAT+TGG | 0.464342 | 1_3:-57988595 | None:intergenic |
| CCCTACAGCGGTACCACCCT+GGG | 0.465739 | 1_3:-57985503 | None:intergenic |
| TTAAAGATATAGTCAAGATT+GGG | 0.466945 | 1_3:+57985148 | Msa0128320:CDS |
| TCCCTACAGCGGTACCACCC+TGG | 0.469154 | 1_3:-57985504 | None:intergenic |
| ATGCCGAAAGAGCGAATGAT+TGG | 0.469955 | 1_3:-57982622 | None:intergenic |
| AGAAGCCGCAATTGTGTTGA+GGG | 0.471558 | 1_3:-57986215 | None:intergenic |
| ATCACTGTGGGAGGATCAAA+TGG | 0.471940 | 1_3:+57987202 | Msa0128320:CDS |
| CCCAGGGTGGTACCGCTGTA+GGG | 0.476166 | 1_3:+57985503 | Msa0128320:CDS |
| TAAGTGTAGACCCCTCTTTG+TGG | 0.484224 | 1_3:-57988126 | None:intergenic |
| GTCGTTCCCGAGAAAATGCT+TGG | 0.486367 | 1_3:+57988449 | Msa0128320:CDS |
| TTGTCGGAGGGAACTTGAAT+GGG | 0.486821 | 1_3:-57982526 | None:intergenic |
| TAGTTTCAACAAAAGAATCA+TGG | 0.486924 | 1_3:-57986186 | None:intergenic |
| CAGGTGATGCACATTGCCGC+TGG | 0.488981 | 1_3:+57984129 | Msa0128320:intron |
| GTTACTTGAGCAGCTCGCCC+AGG | 0.494887 | 1_3:+57985486 | Msa0128320:intron |
| TAGCGAAAGGTGAAGAGTGT+TGG | 0.499266 | 1_3:-57982457 | None:intergenic |
| GCATGTAACGTCTTCAAGCT+GGG | 0.501130 | 1_3:-57984177 | None:intergenic |
| TTGCCTCGTTACAAATTTGG+AGG | 0.501790 | 1_3:-57988640 | None:intergenic |
| GCCCAGGGTGGTACCGCTGT+AGG | 0.504292 | 1_3:+57985502 | Msa0128320:CDS |
| TTGTAGTCAGTGAGACTGCT+TGG | 0.505861 | 1_3:+57987769 | Msa0128320:intron |
| AAGGGTTTGGATTTAGATGG+AGG | 0.507274 | 1_3:-57982379 | None:intergenic |
| TGGATTTAGATGGAGGAGGA+TGG | 0.510935 | 1_3:-57982372 | None:intergenic |
| TTGGTTCAGGCATACGTTCA+CGG | 0.517993 | 1_3:-57982603 | None:intergenic |
| TCATATGCTAATCAATCACT+TGG | 0.518992 | 1_3:-57988473 | None:intergenic |
| AGTTCCCTCCGACAAACTAT+GGG | 0.522708 | 1_3:+57982534 | Msa0128320:CDS |
| CAGGAAGCTGCATTAAAGCT+TGG | 0.524930 | 1_3:+57988395 | Msa0128320:intron |
| ATCCATGTGCTTCAGGTCAT+GGG | 0.525526 | 1_3:+57987166 | Msa0128320:intron |
| AGGAGATTACTGGCAATCAC+TGG | 0.525641 | 1_3:-57987250 | None:intergenic |
| TCAAAGCCTCACACTGGGTA+GGG | 0.527019 | 1_3:-57986589 | None:intergenic |
| ACCCTTCCAGTCACTCATGC+TGG | 0.529133 | 1_3:+57987966 | Msa0128320:intron |
| GCCAAGACAGCCCACAAAGA+GGG | 0.529437 | 1_3:+57988115 | Msa0128320:CDS |
| TTTGACTATGGTCTGTGCAC+AGG | 0.531811 | 1_3:+57986607 | Msa0128320:CDS |
| GCGTTCTTCTCTGAAGGTAG+TGG | 0.533918 | 1_3:-57982491 | None:intergenic |
| ATAAAGTGCAAGTTGGAAGA+AGG | 0.536251 | 1_3:+57982295 | None:intergenic |
| GTAGAGCGCCATTGAATGAA+AGG | 0.536636 | 1_3:-57982398 | None:intergenic |
| GACTGGATTGAATACAAAGA+AGG | 0.537198 | 1_3:+57985525 | Msa0128320:CDS |
| TGCTCCCCATAGTTTGTCGG+AGG | 0.538083 | 1_3:-57982539 | None:intergenic |
| ATTCTTCCTGAAAACGAACC+GGG | 0.540749 | 1_3:+57986410 | Msa0128320:CDS |
| GGTTTGGATTTAGATGGAGG+AGG | 0.543617 | 1_3:-57982376 | None:intergenic |
| AACTCCTGTCCGAGAGTCAA+AGG | 0.546922 | 1_3:-57985195 | None:intergenic |
| TAGAGCGCCATTGAATGAAA+GGG | 0.552157 | 1_3:-57982397 | None:intergenic |
| ACATGCTACACTTGACGCAA+AGG | 0.553349 | 1_3:+57984194 | Msa0128320:CDS |
| ACTGGATTGAATACAAAGAA+GGG | 0.553830 | 1_3:+57985526 | Msa0128320:CDS |
| TTACTTGAGCAGCTCGCCCA+GGG | 0.555935 | 1_3:+57985487 | Msa0128320:intron |
| AAGAAGCCGCAATTGTGTTG+AGG | 0.559590 | 1_3:-57986216 | None:intergenic |
| TGGCTCCTCATCAGCTACGT+TGG | 0.564267 | 1_3:+57988516 | Msa0128320:three_prime_UTR |
| TATTGGAAAAGCGATAATGA+AGG | 0.568181 | 1_3:+57982766 | Msa0128320:CDS |
| GATGCTACACCTTTGACTCT+CGG | 0.573763 | 1_3:+57985186 | Msa0128320:CDS |
| TACACCTTTGACTCTCGGAC+AGG | 0.574266 | 1_3:+57985191 | Msa0128320:CDS |
| ATGATATACGGTTATTAGGA+AGG | 0.574496 | 1_3:+57986254 | Msa0128320:CDS |
| TATTGTAGTGGTCCCCGTTG+CGG | 0.574571 | 1_3:+57986374 | Msa0128320:intron |
| CCATAGTCAAAGCCTCACAC+TGG | 0.578285 | 1_3:-57986595 | None:intergenic |
| CCAGAAAATTGGTTATGACA+AGG | 0.581218 | 1_3:+57988081 | Msa0128320:intron |
| ACTGCGAAAATGACCAATCA+GGG | 0.581494 | 1_3:-57982333 | None:intergenic |
| AGTTTCAACAAAAGAATCAT+GGG | 0.582078 | 1_3:-57986185 | None:intergenic |
| CTCCCACAGTGATTGCAACA+TGG | 0.583709 | 1_3:-57987192 | None:intergenic |
| TTAATCCAACGTAGCTGATG+AGG | 0.586048 | 1_3:-57988521 | None:intergenic |
| TTGCAGAATTTCGATATCGG+TGG | 0.597454 | 1_3:+57982577 | Msa0128320:CDS |
| AACCATGTTGCAATCACTGT+GGG | 0.603033 | 1_3:+57987190 | Msa0128320:CDS |
| GGTGTCACTAGCAGTAGCTA+CGG | 0.604141 | 1_3:+57985966 | Msa0128320:CDS |
| CCAAGACAGCCCACAAAGAG+GGG | 0.609646 | 1_3:+57988116 | Msa0128320:CDS |
| TTTCTTAGTAGACATTCTTG+AGG | 0.610000 | 1_3:+57988609 | Msa0128320:three_prime_UTR |
| CATAGTCAAAGCCTCACACT+GGG | 0.612690 | 1_3:-57986594 | None:intergenic |
| TGTGTCGCGTTCTTCTCTGA+AGG | 0.614865 | 1_3:-57982497 | None:intergenic |
| GCTGCGCAAGAAGTTGCTGA+TGG | 0.620565 | 1_3:+57982788 | Msa0128320:CDS |
| GTCAAAGCCTCACACTGGGT+AGG | 0.622924 | 1_3:-57986590 | None:intergenic |
| GCTCCCCATAGTTTGTCGGA+GGG | 0.625414 | 1_3:-57982538 | None:intergenic |
| AATTTCAAAGCTATTGCATG+AGG | 0.628115 | 1_3:+57987852 | Msa0128320:CDS |
| TGCAAGTTGGAAGAAGGCTG+CGG | 0.629514 | 1_3:+57982301 | None:intergenic |
| TGAGTTCACCAAGACCGCAA+CGG | 0.629734 | 1_3:-57986388 | None:intergenic |
| CATGTTGCAATCACTGTGGG+AGG | 0.630135 | 1_3:+57987193 | Msa0128320:CDS |
| GGTTGATGAGAAGTAGCGAA+AGG | 0.630747 | 1_3:-57982470 | None:intergenic |
| TGAGTTTATTTCAGTTCCAG+CGG | 0.637139 | 1_3:-57984145 | None:intergenic |
| TGCCAAGACAGCCCACAAAG+AGG | 0.639329 | 1_3:+57988114 | Msa0128320:CDS |
| TGGAGCCCTCAACACAATTG+CGG | 0.643391 | 1_3:+57986210 | Msa0128320:CDS |
| CATGTAACGTCTTCAAGCTG+GGG | 0.648325 | 1_3:-57984176 | None:intergenic |
| CTGGATTGAATACAAAGAAG+GGG | 0.651884 | 1_3:+57985527 | Msa0128320:CDS |
| AAAGGTGAAGAGTGTTGGTG+AGG | 0.652729 | 1_3:-57982452 | None:intergenic |
| CTTGAGCAGCTCGCCCAGGG+TGG | 0.654435 | 1_3:+57985490 | Msa0128320:intron |
| GAGATTCTTGGCCATAAGCG+CGG | 0.655787 | 1_3:+57983915 | Msa0128320:CDS |
| GGTTAACCCTACCCAGTGTG+AGG | 0.656472 | 1_3:+57986583 | Msa0128320:CDS |
| CATATGCTAATCAATCACTT+GGG | 0.664339 | 1_3:-57988472 | None:intergenic |
| GATCCTCCAAATTTGTAACG+AGG | 0.680560 | 1_3:+57988637 | Msa0128320:three_prime_UTR |
| AAGATTGTGACATATTGACA+TGG | 0.707630 | 1_3:-57983962 | None:intergenic |
| GTTCCCTCCGACAAACTATG+GGG | 0.713948 | 1_3:+57982535 | Msa0128320:CDS |
| GGTTCAGGCATACGTTCACG+GGG | 0.718163 | 1_3:-57982601 | None:intergenic |
| ATTCAATCCAGTCCCTACAG+CGG | 0.740412 | 1_3:-57985515 | None:intergenic |
| TGTCAAACCTGATACATACG+CGG | 0.760394 | 1_3:-57985398 | None:intergenic |
| AAACCATGTTGCAATCACTG+TGG | 0.768207 | 1_3:+57987189 | Msa0128320:CDS |
| AGTTCACCAAGACCGCAACG+GGG | 0.813827 | 1_3:-57986386 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAAATACAAAAAC+AGG | - | chr1_3:57982902-57982921 | None:intergenic | 10.0% |
| !! | TTAACTTAAAAAAGTAAATT+TGG | + | chr1_3:57985899-57985918 | Msa0128320:intron | 10.0% |
| !!! | TGTTTTGTTTTAATAATTAT+TGG | + | chr1_3:57988496-57988515 | Msa0128320:three_prime_UTR | 10.0% |
| !!! | AAACTTTCTTATTTCATAAT+AGG | - | chr1_3:57983855-57983874 | None:intergenic | 15.0% |
| !! | TAAATATAAATGGGATTTAA+TGG | + | chr1_3:57984501-57984520 | Msa0128320:intron | 15.0% |
| !! | TAACATACATAACAAAATAA+AGG | - | chr1_3:57987293-57987312 | None:intergenic | 15.0% |
| !!! | AAATGTGATTTAGGTTAATA+TGG | + | chr1_3:57982724-57982743 | Msa0128320:intron | 20.0% |
| !! | AATAAATACAAAAACAGGAT+AGG | - | chr1_3:57982897-57982916 | None:intergenic | 20.0% |
| !! | AAGTACTTATCAAAATGTTT+CGG | + | chr1_3:57982953-57982972 | Msa0128320:intron | 20.0% |
| !! | TCTTTATTGTATATCATAGA+TGG | + | chr1_3:57983718-57983737 | Msa0128320:intron | 20.0% |
| !!! | AGAAAACTGAAACAAATTTT+TGG | + | chr1_3:57984260-57984279 | Msa0128320:intron | 20.0% |
| !! | AAATTGTAACTTTCATACAA+AGG | - | chr1_3:57984318-57984337 | None:intergenic | 20.0% |
| !! | AAAACCGGATTAAATATAAA+TGG | + | chr1_3:57984491-57984510 | Msa0128320:intron | 20.0% |
| !! | AAACCGGATTAAATATAAAT+GGG | + | chr1_3:57984492-57984511 | Msa0128320:intron | 20.0% |
| !! | AATCCCATTTATATTTAATC+CGG | - | chr1_3:57984498-57984517 | None:intergenic | 20.0% |
| !!! | TTGCATGATTAATTATTTTC+TGG | + | chr1_3:57984836-57984855 | Msa0128320:intron | 20.0% |
| !!! | TAAGATGGAATTTTATAAAC+TGG | + | chr1_3:57985002-57985021 | Msa0128320:intron | 20.0% |
| !! | TATCTTTAAATTCAATTGAC+TGG | - | chr1_3:57985137-57985156 | None:intergenic | 20.0% |
| !! | TTTAAAGATATAGTCAAGAT+TGG | + | chr1_3:57985147-57985166 | Msa0128320:CDS | 20.0% |
| !! | TTAAAGATATAGTCAAGATT+GGG | + | chr1_3:57985148-57985167 | Msa0128320:CDS | 20.0% |
| !!! | TGTTTGGCTTTAAATTATAA+TGG | + | chr1_3:57985751-57985770 | Msa0128320:intron | 20.0% |
| !! | TGTAGAAAACAATTCTTTAA+TGG | + | chr1_3:57986333-57986352 | Msa0128320:intron | 20.0% |
| !! | GTAGAAAACAATTCTTTAAT+GGG | + | chr1_3:57986334-57986353 | Msa0128320:intron | 20.0% |
| !! | ACTGTATTATTCAATATTCA+AGG | - | chr1_3:57987039-57987058 | None:intergenic | 20.0% |
| !!! | TATATCCTTGATTTTAGTTT+TGG | + | chr1_3:57987093-57987112 | Msa0128320:intron | 20.0% |
| !! | ATTTATAAATCATGCAAACA+AGG | + | chr1_3:57987319-57987338 | Msa0128320:intron | 20.0% |
| !! | ATAGTATATATGCATATACA+TGG | + | chr1_3:57987610-57987629 | Msa0128320:intron | 20.0% |
| !! | TATTCCATATTGCATAAATT+TGG | - | chr1_3:57987707-57987726 | None:intergenic | 20.0% |
| ! | TGATTGATGAAATGTGATTT+AGG | + | chr1_3:57982715-57982734 | Msa0128320:intron | 25.0% |
| !! | ATTTAGGTTAATATGGAGTA+TGG | + | chr1_3:57982731-57982750 | Msa0128320:intron | 25.0% |
| !! | AGAACTTGAATTTGATTTCT+AGG | + | chr1_3:57983074-57983093 | Msa0128320:intron | 25.0% |
| ! | TAACACCAAAAAGAATCTAT+TGG | + | chr1_3:57983182-57983201 | Msa0128320:intron | 25.0% |
| !! | TTATGCCAATAGATTCTTTT+TGG | - | chr1_3:57983190-57983209 | None:intergenic | 25.0% |
| !! | ATTAAGTTGCTTATCTAAAC+AGG | + | chr1_3:57983420-57983439 | Msa0128320:intron | 25.0% |
| !!! | TTCTTATTGATCACTTTTTG+TGG | + | chr1_3:57984047-57984066 | Msa0128320:intron | 25.0% |
| ! | GAAATAAGAAACAGTTTACA+AGG | - | chr1_3:57984082-57984101 | None:intergenic | 25.0% |
| !! | TACAATTTAGCAATTTTGTG+TGG | + | chr1_3:57984330-57984349 | Msa0128320:intron | 25.0% |
| !! | TTTCTTAGTTTGAAATGGTT+TGG | - | chr1_3:57984474-57984493 | None:intergenic | 25.0% |
| ! | TGTAGTGATAATATCAGAAT+TGG | - | chr1_3:57984789-57984808 | None:intergenic | 25.0% |
| !!! | TTAATTATTTTCTGGTCTTG+TGG | + | chr1_3:57984844-57984863 | Msa0128320:intron | 25.0% |
| ! | TCCAAATAATATATTGTGAC+AGG | + | chr1_3:57984926-57984945 | Msa0128320:intron | 25.0% |
| ! | TCCTGTCACAATATATTATT+TGG | - | chr1_3:57984930-57984949 | None:intergenic | 25.0% |
| ! | AAAATTTCATGAAAGTTACG+AGG | - | chr1_3:57984966-57984985 | None:intergenic | 25.0% |
| !!! | TACTTTCATTTGGTTTTTGA+TGG | + | chr1_3:57985244-57985263 | Msa0128320:intron | 25.0% |
| ! | ATCGAATAAAATATGCCAAA+AGG | - | chr1_3:57985639-57985658 | None:intergenic | 25.0% |
| ! | CATCATATACCTAAAAGTAA+TGG | + | chr1_3:57985693-57985712 | Msa0128320:intron | 25.0% |
| ! | AAGATCTTATGGATATGATA+TGG | + | chr1_3:57985809-57985828 | Msa0128320:intron | 25.0% |
| ! | AGATCTTATGGATATGATAT+GGG | + | chr1_3:57985810-57985829 | Msa0128320:intron | 25.0% |
| !!! | TGTTTTTTTTCAGCTTAAAC+AGG | - | chr1_3:57985871-57985890 | None:intergenic | 25.0% |
| ! | AAGCTGAAAAAAAACATTTG+TGG | + | chr1_3:57985875-57985894 | Msa0128320:intron | 25.0% |
| !! | TTATTTTCTGCTGTTACAAA+GGG | - | chr1_3:57986003-57986022 | None:intergenic | 25.0% |
| ! | AGTTTCAACAAAAGAATCAT+GGG | - | chr1_3:57986188-57986207 | None:intergenic | 25.0% |
| ! | TAGTTTCAACAAAAGAATCA+TGG | - | chr1_3:57986189-57986208 | None:intergenic | 25.0% |
| ! | TGAAGATAGCTAATGATATA+CGG | + | chr1_3:57986242-57986261 | Msa0128320:CDS | 25.0% |
| ! | TGAATTCTATCTTATTGTAG+TGG | + | chr1_3:57986362-57986381 | Msa0128320:intron | 25.0% |
| ! | ATGTATATTAAGTAAGCATG+AGG | - | chr1_3:57986459-57986478 | None:intergenic | 25.0% |
| ! | GCTAACAAAATAATAAGCTA+TGG | - | chr1_3:57986512-57986531 | None:intergenic | 25.0% |
| !!! | TATTTTGTTAGCCTTAGAAT+TGG | + | chr1_3:57986520-57986539 | Msa0128320:intron | 25.0% |
| !!! | ATTTTGTTAGCCTTAGAATT+GGG | + | chr1_3:57986521-57986540 | Msa0128320:intron | 25.0% |
| ! | GTTACGCAATTTGAATTATA+TGG | + | chr1_3:57986715-57986734 | Msa0128320:intron | 25.0% |
| ! | TGAATTATATGGTTGCTAAT+AGG | + | chr1_3:57986726-57986745 | Msa0128320:intron | 25.0% |
| ! | GAATTATATGGTTGCTAATA+GGG | + | chr1_3:57986727-57986746 | Msa0128320:intron | 25.0% |
| !!! | AAGATTTTTTAGCATAAAGC+TGG | + | chr1_3:57986950-57986969 | Msa0128320:intron | 25.0% |
| !!! | AGATTTTTTAGCATAAAGCT+GGG | + | chr1_3:57986951-57986970 | Msa0128320:intron | 25.0% |
| ! | AAATCAAGGATATAATTGCA+AGG | - | chr1_3:57987087-57987106 | None:intergenic | 25.0% |
| !!! | TGGATTTATCTTCTTTTTTG+GGG | - | chr1_3:57987641-57987660 | None:intergenic | 25.0% |
| !!! | CTGGATTTATCTTCTTTTTT+GGG | - | chr1_3:57987642-57987661 | None:intergenic | 25.0% |
| ! | GATTCCAAATTTATGCAATA+TGG | + | chr1_3:57987700-57987719 | Msa0128320:intron | 25.0% |
| ! | AGCATTTAAGTACATCTTTA+AGG | - | chr1_3:57987730-57987749 | None:intergenic | 25.0% |
| !! | TCTTACACAATTCTTTTCAA+AGG | - | chr1_3:57987809-57987828 | None:intergenic | 25.0% |
| ! | TTTGAAAAGAATTGTGTAAG+AGG | + | chr1_3:57987808-57987827 | Msa0128320:CDS | 25.0% |
| ! | ACAGAAAAACAAGAATAACT+AGG | - | chr1_3:57988166-57988185 | None:intergenic | 25.0% |
| ! | TTGAAATTGAAATGATGATC+AGG | + | chr1_3:57988376-57988395 | Msa0128320:intron | 25.0% |
| ! | TATTTCCCAATTCATTCAAT+GGG | - | chr1_3:57988562-57988581 | None:intergenic | 25.0% |
| !! | AGTCAAAATCATTGGTTATT+TGG | - | chr1_3:57988590-57988609 | None:intergenic | 25.0% |
| ! | ACTAAGAAAGTCAAAATCAT+TGG | - | chr1_3:57988598-57988617 | None:intergenic | 25.0% |
| !! | AGGTTGATTTGGTTGATAAA+CGG | - | chr1_3:57982435-57982454 | None:intergenic | 30.0% |
| TCTTTGCAGAATTTCGATAT+CGG | + | chr1_3:57982574-57982593 | Msa0128320:CDS | 30.0% | |
| !! | ATTATCGCTTTTCCAATAGT+AGG | - | chr1_3:57982764-57982783 | None:intergenic | 30.0% |
| TATTGGAAAAGCGATAATGA+AGG | + | chr1_3:57982766-57982785 | Msa0128320:CDS | 30.0% | |
| !!! | ATCATTTTCCTCTTGTTGTT+TGG | + | chr1_3:57982822-57982841 | Msa0128320:intron | 30.0% |
| AAGTAACATGAATGCTAATG+AGG | + | chr1_3:57982865-57982884 | Msa0128320:intron | 30.0% | |
| CACCAAATGATGAATTGTTT+GGG | + | chr1_3:57983051-57983070 | Msa0128320:intron | 30.0% | |
| ! | ACTTGAATTTGATTTCTAGG+TGG | + | chr1_3:57983077-57983096 | Msa0128320:intron | 30.0% |
| ! | TTTCTAGGTGGAACAATTTT+TGG | + | chr1_3:57983089-57983108 | Msa0128320:intron | 30.0% |
| TAAATACTTGTGAGACTGTT+TGG | + | chr1_3:57983207-57983226 | Msa0128320:intron | 30.0% | |
| AAATACTTGTGAGACTGTTT+GGG | + | chr1_3:57983208-57983227 | Msa0128320:intron | 30.0% | |
| GAGCTTATAAAAATAGCCAT+TGG | + | chr1_3:57983232-57983251 | Msa0128320:intron | 30.0% | |
| ATAGCTTATATGAGAGTAGT+TGG | + | chr1_3:57983319-57983338 | Msa0128320:intron | 30.0% | |
| ! | AATAGTACTGAGAGTACATT+TGG | - | chr1_3:57983597-57983616 | None:intergenic | 30.0% |
| ! | AATCTAAGATCCTTAAACGT+GGG | - | chr1_3:57983667-57983686 | None:intergenic | 30.0% |
| ! | TAATCTAAGATCCTTAAACG+TGG | - | chr1_3:57983668-57983687 | None:intergenic | 30.0% |
| ! | TTTGTGTTTGAACTCTTTTC+AGG | + | chr1_3:57983872-57983891 | Msa0128320:intron | 30.0% |
| ACATATTGACATGGTCATTT+GGG | - | chr1_3:57983956-57983975 | None:intergenic | 30.0% | |
| AAGATTGTGACATATTGACA+TGG | - | chr1_3:57983965-57983984 | None:intergenic | 30.0% | |
| CCATTTCAAACTAAGAAAAC+CGG | + | chr1_3:57984476-57984495 | Msa0128320:intron | 30.0% | |
| ATAAATGGGATTTAATGGTC+AGG | + | chr1_3:57984506-57984525 | Msa0128320:intron | 30.0% | |
| ATAAATGTGAAAATCATGCC+AGG | + | chr1_3:57984708-57984727 | Msa0128320:intron | 30.0% | |
| AATTAATCATGCAAGTTGCA+AGG | - | chr1_3:57984830-57984849 | None:intergenic | 30.0% | |
| TAGTCAAGACACTGATAAAT+GGG | - | chr1_3:57985061-57985080 | None:intergenic | 30.0% | |
| ATAGTCAAGACACTGATAAA+TGG | - | chr1_3:57985062-57985081 | None:intergenic | 30.0% | |
| CAAGTAAGCTTACTTTCATT+TGG | + | chr1_3:57985234-57985253 | Msa0128320:intron | 30.0% | |
| GTAAAATCATGACAGTTTGT+GGG | + | chr1_3:57985305-57985324 | Msa0128320:intron | 30.0% | |
| TATACTTCAGCTGTCAATAA+AGG | - | chr1_3:57985352-57985371 | None:intergenic | 30.0% | |
| ACTGGATTGAATACAAAGAA+GGG | + | chr1_3:57985526-57985545 | Msa0128320:CDS | 30.0% | |
| ! | AGACGCTATAACTTTCATTT+TGG | - | chr1_3:57985605-57985624 | None:intergenic | 30.0% |
| TGATAGTAAGAAACAATTGC+CGG | - | chr1_3:57985675-57985694 | None:intergenic | 30.0% | |
| !! | CTAAAAGTAATGGACTCTAT+CGG | + | chr1_3:57985703-57985722 | Msa0128320:intron | 30.0% |
| ATCATAAAAATCGATGTGCT+AGG | + | chr1_3:57985841-57985860 | Msa0128320:intron | 30.0% | |
| ! | GTTAAACAGTGATAATTTGC+TGG | + | chr1_3:57985921-57985940 | Msa0128320:intron | 30.0% |
| !! | ATAATTTGCTGGATGATTTC+AGG | + | chr1_3:57985932-57985951 | Msa0128320:intron | 30.0% |
| !! | TGATTTCAGGTTTGATGTTA+AGG | + | chr1_3:57985945-57985964 | Msa0128320:intron | 30.0% |
| !! | CTTATTTTCTGCTGTTACAA+AGG | - | chr1_3:57986004-57986023 | None:intergenic | 30.0% |
| AACAGCAGAAAATAAGTTTG+AGG | + | chr1_3:57986008-57986027 | Msa0128320:CDS | 30.0% | |
| ! | AGAAAATAAGTTTGAGGCTT+TGG | + | chr1_3:57986014-57986033 | Msa0128320:CDS | 30.0% |
| ! | GATTCTTTTGTTGAAACTAG+TGG | + | chr1_3:57986190-57986209 | Msa0128320:CDS | 30.0% |
| GCTAATGATATACGGTTATT+AGG | + | chr1_3:57986250-57986269 | Msa0128320:CDS | 30.0% | |
| ATGATATACGGTTATTAGGA+AGG | + | chr1_3:57986254-57986273 | Msa0128320:CDS | 30.0% | |
| TGAATCAAATCCCAATTCTA+AGG | - | chr1_3:57986534-57986553 | None:intergenic | 30.0% | |
| CAAAAAGAAACAGAACAAGA+TGG | + | chr1_3:57986816-57986835 | Msa0128320:intron | 30.0% | |
| !!! | TCCTTGATTTTAGTTTTGGT+TGG | + | chr1_3:57987097-57987116 | Msa0128320:intron | 30.0% |
| CAGAAATTTAGTCACTGTTA+AGG | - | chr1_3:57987133-57987152 | None:intergenic | 30.0% | |
| TATGTTGGCAAAGTAGAAAA+TGG | + | chr1_3:57987517-57987536 | Msa0128320:intron | 30.0% | |
| ATGTTGGCAAAGTAGAAAAT+GGG | + | chr1_3:57987518-57987537 | Msa0128320:intron | 30.0% | |
| CAGATATGTTGTGTTTGTTT+AGG | + | chr1_3:57987555-57987574 | Msa0128320:intron | 30.0% | |
| !!! | CCTGGATTTATCTTCTTTTT+TGG | - | chr1_3:57987643-57987662 | None:intergenic | 30.0% |
| CCAAAAAAGAAGATAAATCC+AGG | + | chr1_3:57987640-57987659 | Msa0128320:intron | 30.0% | |
| AATTTCAAAGCTATTGCATG+AGG | + | chr1_3:57987852-57987871 | Msa0128320:CDS | 30.0% | |
| CAACAACATGCATTAGATAA+GGG | - | chr1_3:57987931-57987950 | None:intergenic | 30.0% | |
| ACAACAACATGCATTAGATA+AGG | - | chr1_3:57987932-57987951 | None:intergenic | 30.0% | |
| ATTTGTCTGTTCCAGAAAAT+TGG | + | chr1_3:57988070-57988089 | Msa0128320:intron | 30.0% | |
| TACCATTTCGACTCTTATAT+TGG | + | chr1_3:57988261-57988280 | Msa0128320:intron | 30.0% | |
| AACCAATATAAGAGTCGAAA+TGG | - | chr1_3:57988266-57988285 | None:intergenic | 30.0% | |
| ! | TGACAGTAGTATAGTTTGTA+TGG | + | chr1_3:57988296-57988315 | Msa0128320:intron | 30.0% |
| GCATGTAGAAATCATGTAAT+AGG | - | chr1_3:57988333-57988352 | None:intergenic | 30.0% | |
| CATATGCTAATCAATCACTT+GGG | - | chr1_3:57988475-57988494 | None:intergenic | 30.0% | |
| TCATATGCTAATCAATCACT+TGG | - | chr1_3:57988476-57988495 | None:intergenic | 30.0% | |
| CTATTTCCCAATTCATTCAA+TGG | - | chr1_3:57988563-57988582 | None:intergenic | 30.0% | |
| TTTCTTAGTAGACATTCTTG+AGG | + | chr1_3:57988609-57988628 | Msa0128320:three_prime_UTR | 30.0% | |
| TGAAAGGGTTTGGATTTAGA+TGG | - | chr1_3:57982385-57982404 | None:intergenic | 35.0% | |
| ATCCAAACCCTTTCATTCAA+TGG | + | chr1_3:57982390-57982409 | Msa0128320:exon | 35.0% | |
| ! | TATGGTCTTGATCCTACTAT+TGG | + | chr1_3:57982749-57982768 | Msa0128320:CDS | 35.0% |
| CCAAACAATTCATCATTTGG+TGG | - | chr1_3:57983053-57983072 | None:intergenic | 35.0% | |
| CCACCAAATGATGAATTGTT+TGG | + | chr1_3:57983050-57983069 | Msa0128320:intron | 35.0% | |
| CTCCCAAACAATTCATCATT+TGG | - | chr1_3:57983056-57983075 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTTTGC+AGG | + | chr1_3:57983276-57983295 | Msa0128320:intron | 35.0% | |
| AAACTATCCTGCAAAGCTTA+TGG | - | chr1_3:57983286-57983305 | None:intergenic | 35.0% | |
| ACAGCATATACACATGACAT+GGG | - | chr1_3:57983447-57983466 | None:intergenic | 35.0% | |
| ! | CATAACTAGACCTTCAAGTT+CGG | - | chr1_3:57983631-57983650 | None:intergenic | 35.0% |
| ATTATTATGCCCCACGTTTA+AGG | + | chr1_3:57983654-57983673 | Msa0128320:intron | 35.0% | |
| ! | ATCTAAGATCCTTAAACGTG+GGG | - | chr1_3:57983666-57983685 | None:intergenic | 35.0% |
| !! | TTCCCAGTTTCTGTTTTGTT+TGG | + | chr1_3:57983773-57983792 | Msa0128320:intron | 35.0% |
| GTCCAAACAAAACAGAAACT+GGG | - | chr1_3:57983778-57983797 | None:intergenic | 35.0% | |
| TGTCCAAACAAAACAGAAAC+TGG | - | chr1_3:57983779-57983798 | None:intergenic | 35.0% | |
| GACATATTGACATGGTCATT+TGG | - | chr1_3:57983957-57983976 | None:intergenic | 35.0% | |
| ATGTACAAACGACTTACAGT+TGG | - | chr1_3:57984002-57984021 | None:intergenic | 35.0% | |
| ! | ATGTTTGTTTCTCTCTTTCC+AGG | + | chr1_3:57984110-57984129 | Msa0128320:intron | 35.0% |
| TGAGTTTATTTCAGTTCCAG+CGG | - | chr1_3:57984148-57984167 | None:intergenic | 35.0% | |
| !! | GCAATGAAAGTTGATGGTAT+CGG | - | chr1_3:57984288-57984307 | None:intergenic | 35.0% |
| ACTTTCATACAAAGGATCAC+AGG | - | chr1_3:57984310-57984329 | None:intergenic | 35.0% | |
| GAATGTCTAATGTCTCTATC+TGG | + | chr1_3:57984404-57984423 | Msa0128320:intron | 35.0% | |
| !! | CCGGTTTTCTTAGTTTGAAA+TGG | - | chr1_3:57984479-57984498 | None:intergenic | 35.0% |
| !!! | ATTTTCTGGTCTTGTGGTTT+TGG | + | chr1_3:57984850-57984869 | Msa0128320:intron | 35.0% |
| ! | CTTTCTTGCAATGTTCCTTT+TGG | + | chr1_3:57984879-57984898 | Msa0128320:intron | 35.0% |
| TGCATACATGATAGACCAAA+AGG | - | chr1_3:57984897-57984916 | None:intergenic | 35.0% | |
| ! | CTTTCTCTTAGTCTCTAAGA+TGG | + | chr1_3:57984987-57985006 | Msa0128320:intron | 35.0% |
| ACACTGATAAATGGGATCTA+AGG | - | chr1_3:57985053-57985072 | None:intergenic | 35.0% | |
| ! | TTTTACGAAGCGTACTAATG+AGG | - | chr1_3:57985291-57985310 | None:intergenic | 35.0% |
| CGTAAAATCATGACAGTTTG+TGG | + | chr1_3:57985304-57985323 | Msa0128320:intron | 35.0% | |
| GACTGGATTGAATACAAAGA+AGG | + | chr1_3:57985525-57985544 | Msa0128320:CDS | 35.0% | |
| CTGGATTGAATACAAAGAAG+GGG | + | chr1_3:57985527-57985546 | Msa0128320:CDS | 35.0% | |
| ! | GTCTTTCTTTTCACTCCTTT+TGG | + | chr1_3:57985621-57985640 | Msa0128320:intron | 35.0% |
| ! | TTCGATATGAGCTTTTTGTC+CGG | + | chr1_3:57985653-57985672 | Msa0128320:intron | 35.0% |
| !! | CGATAGAGTCCATTACTTTT+AGG | - | chr1_3:57985705-57985724 | None:intergenic | 35.0% |
| ! | GCATGTGCATTTTTCATGTT+TGG | + | chr1_3:57985735-57985754 | Msa0128320:intron | 35.0% |
| ! | CATTTTCGCTGAAGATCTTA+TGG | + | chr1_3:57985798-57985817 | Msa0128320:intron | 35.0% |
| TTCCTTGTCTTTAATCTGTC+TGG | + | chr1_3:57986058-57986077 | Msa0128320:intron | 35.0% | |
| ! | CGTTTGTATTCTCCATTTTC+AGG | + | chr1_3:57986159-57986178 | Msa0128320:intron | 35.0% |
| CACAACCTTATTCTGTTTCA+GGG | + | chr1_3:57986557-57986576 | Msa0128320:intron | 35.0% | |
| ACAACCTTATTCTGTTTCAG+GGG | + | chr1_3:57986558-57986577 | Msa0128320:intron | 35.0% | |
| ! | AGTGTGTCGTTAGTAGTATT+AGG | + | chr1_3:57986899-57986918 | Msa0128320:intron | 35.0% |
| GCCAACCAAAACTAAAATCA+AGG | - | chr1_3:57987101-57987120 | None:intergenic | 35.0% | |
| AGGATATGAAACATACTTGC+AGG | - | chr1_3:57987273-57987292 | None:intergenic | 35.0% | |
| !!! | CTTCTAGCTAGGTTTTAACT+TGG | + | chr1_3:57987344-57987363 | Msa0128320:intron | 35.0% |
| ATGTTACCTTACCTGATTCT+AGG | + | chr1_3:57987374-57987393 | Msa0128320:intron | 35.0% | |
| GTTTACATCAACCTAGAATC+AGG | - | chr1_3:57987388-57987407 | None:intergenic | 35.0% | |
| CTGAATAGATGAAAGTCAGA+TGG | + | chr1_3:57987463-57987482 | Msa0128320:intron | 35.0% | |
| TATGTCTTTGTGATGACATG+TGG | + | chr1_3:57987585-57987604 | Msa0128320:intron | 35.0% | |
| GAATCAAAACAAAAGCCAAC+AGG | - | chr1_3:57987685-57987704 | None:intergenic | 35.0% | |
| ACATGCATTAGATAAGGGTT+TGG | - | chr1_3:57987926-57987945 | None:intergenic | 35.0% | |
| ! | CCTTGTCATAACCAATTTTC+TGG | - | chr1_3:57988084-57988103 | None:intergenic | 35.0% |
| CCAGAAAATTGGTTATGACA+AGG | + | chr1_3:57988081-57988100 | Msa0128320:intron | 35.0% | |
| TTGTTGCCTCGTTACAAATT+TGG | - | chr1_3:57988646-57988665 | None:intergenic | 35.0% | |
| TGTAACGAGGCAACAAATAA+AGG | + | chr1_3:57988650-57988669 | Msa0128320:three_prime_UTR | 35.0% | |
| ACTGCGAAAATGACCAATCA+GGG | - | chr1_3:57982336-57982355 | None:intergenic | 40.0% | |
| AACTGCGAAAATGACCAATC+AGG | - | chr1_3:57982337-57982356 | None:intergenic | 40.0% | |
| AAGGGTTTGGATTTAGATGG+AGG | - | chr1_3:57982382-57982401 | None:intergenic | 40.0% | |
| ! | TAGAGCGCCATTGAATGAAA+GGG | - | chr1_3:57982400-57982419 | None:intergenic | 40.0% |
| TTGCAGAATTTCGATATCGG+TGG | + | chr1_3:57982577-57982596 | Msa0128320:CDS | 40.0% | |
| ! | AAAGAGCGAATGATTGGTTC+AGG | - | chr1_3:57982619-57982638 | None:intergenic | 40.0% |
| GAACCAATCATTCGCTCTTT+CGG | + | chr1_3:57982619-57982638 | Msa0128320:CDS | 40.0% | |
| CTTGAAAAAATGCGCTGCTA+AGG | + | chr1_3:57982645-57982664 | Msa0128320:CDS | 40.0% | |
| !!! | AGGTGGAACAATTTTTGGCT+AGG | + | chr1_3:57983094-57983113 | Msa0128320:intron | 40.0% |
| TGGTAATCCAGAGTTCAATC+CGG | - | chr1_3:57983133-57983152 | None:intergenic | 40.0% | |
| GATTGAACTCTGGATTACCA+GGG | + | chr1_3:57983133-57983152 | Msa0128320:intron | 40.0% | |
| TCTTTCCCTTAGTAACTGGA+GGG | + | chr1_3:57983158-57983177 | Msa0128320:intron | 40.0% | |
| GTTAACCCTCCAGTTACTAA+GGG | - | chr1_3:57983166-57983185 | None:intergenic | 40.0% | |
| TGTTAACCCTCCAGTTACTA+AGG | - | chr1_3:57983167-57983186 | None:intergenic | 40.0% | |
| AACAGCTTATGACATGCCAA+TGG | - | chr1_3:57983251-57983270 | None:intergenic | 40.0% | |
| GACAGCATATACACATGACA+TGG | - | chr1_3:57983448-57983467 | None:intergenic | 40.0% | |
| GTACTCTCAGTACTATTGTG+TGG | + | chr1_3:57983600-57983619 | Msa0128320:intron | 40.0% | |
| CAGTGATCAAATGGATGGAA+CGG | - | chr1_3:57983826-57983845 | None:intergenic | 40.0% | |
| ! | AACAGAGCATCAGAGATTCT+TGG | + | chr1_3:57983903-57983922 | Msa0128320:CDS | 40.0% |
| TCACAGGCAATGAAAGTTGA+TGG | - | chr1_3:57984294-57984313 | None:intergenic | 40.0% | |
| ! | AATTTTGTGTGGTTGCCTGA+GGG | + | chr1_3:57984341-57984360 | Msa0128320:intron | 40.0% |
| AGGGTATAAGACTTCTGACA+CGG | + | chr1_3:57984360-57984379 | Msa0128320:intron | 40.0% | |
| !! | TGAAATGGTTTGGTCAATCG+TGG | - | chr1_3:57984464-57984483 | None:intergenic | 40.0% |
| ! | TAGCATGAAAGAAGCATGTC+AGG | - | chr1_3:57984658-57984677 | None:intergenic | 40.0% |
| AGGTGAATAGCATGTTAACC+TGG | - | chr1_3:57984729-57984748 | None:intergenic | 40.0% | |
| CACCTAACCTGTTCTTCTTA+TGG | + | chr1_3:57984744-57984763 | Msa0128320:intron | 40.0% | |
| AGCCATAAGAAGAACAGGTT+AGG | - | chr1_3:57984749-57984768 | None:intergenic | 40.0% | |
| TTATCACTACATGTCTCCCT+TGG | + | chr1_3:57984798-57984817 | Msa0128320:intron | 40.0% | |
| AGTTGCAAGGATTCAACCAA+GGG | - | chr1_3:57984817-57984836 | None:intergenic | 40.0% | |
| AAGTTGCAAGGATTCAACCA+AGG | - | chr1_3:57984818-57984837 | None:intergenic | 40.0% | |
| AAATCATGACAGTTTGTGGG+AGG | + | chr1_3:57985308-57985327 | Msa0128320:intron | 40.0% | |
| AATCATGACAGTTTGTGGGA+GGG | + | chr1_3:57985309-57985328 | Msa0128320:intron | 40.0% | |
| TGTCAAACCTGATACATACG+CGG | - | chr1_3:57985401-57985420 | None:intergenic | 40.0% | |
| GTTCTTCACCTGTATGATTC+TGG | + | chr1_3:57985445-57985464 | Msa0128320:intron | 40.0% | |
| TCAGAACTCCAGAATCATAC+AGG | - | chr1_3:57985456-57985475 | None:intergenic | 40.0% | |
| AAAACAAGCGCTTAGCAATC+AGG | - | chr1_3:57985564-57985583 | None:intergenic | 40.0% | |
| CACCAGACAGATTAAAGACA+AGG | - | chr1_3:57986063-57986082 | None:intergenic | 40.0% | |
| CATTCTTCCTGAAAACGAAC+CGG | + | chr1_3:57986409-57986428 | Msa0128320:CDS | 40.0% | |
| ATTCTTCCTGAAAACGAACC+GGG | + | chr1_3:57986410-57986429 | Msa0128320:CDS | 40.0% | |
| AGTAAGCATGAGGTTCTTAC+AGG | - | chr1_3:57986449-57986468 | None:intergenic | 40.0% | |
| CCTGAAACAGAATAAGGTTG+TGG | - | chr1_3:57986559-57986578 | None:intergenic | 40.0% | |
| CCACAACCTTATTCTGTTTC+AGG | + | chr1_3:57986556-57986575 | Msa0128320:intron | 40.0% | |
| TTGCTAATAGGGTCCATGAT+AGG | + | chr1_3:57986738-57986757 | Msa0128320:intron | 40.0% | |
| TGCTAATAGGGTCCATGATA+GGG | + | chr1_3:57986739-57986758 | Msa0128320:intron | 40.0% | |
| AGCTAGTTATGTTAGTGAGG+TGG | + | chr1_3:57986855-57986874 | Msa0128320:intron | 40.0% | |
| !! | AGGTGGTTGAAGTTTGTTAG+AGG | + | chr1_3:57986872-57986891 | Msa0128320:intron | 40.0% |
| ! | GTGTCGTTAGTAGTATTAGG+AGG | + | chr1_3:57986902-57986921 | Msa0128320:intron | 40.0% |
| TGTTATGATCCATGTGCTTC+AGG | + | chr1_3:57987159-57987178 | Msa0128320:intron | 40.0% | |
| AAACCATGTTGCAATCACTG+TGG | + | chr1_3:57987189-57987208 | Msa0128320:CDS | 40.0% | |
| AACCATGTTGCAATCACTGT+GGG | + | chr1_3:57987190-57987209 | Msa0128320:CDS | 40.0% | |
| ACATACTTGCAGGAGATTAC+TGG | - | chr1_3:57987263-57987282 | None:intergenic | 40.0% | |
| ! | CAAACAAGGAACTTCTAGCT+AGG | + | chr1_3:57987333-57987352 | Msa0128320:intron | 40.0% |
| CATCAACCTAGAATCAGGTA+AGG | - | chr1_3:57987383-57987402 | None:intergenic | 40.0% | |
| ! | AGATGAAAGTCAGATGGACT+TGG | + | chr1_3:57987469-57987488 | Msa0128320:intron | 40.0% |
| ! | GCACAAACTCTTTGCTATGT+TGG | + | chr1_3:57987502-57987521 | Msa0128320:intron | 40.0% |
| TGGCAAAGTAGAAAATGGGA+AGG | + | chr1_3:57987522-57987541 | Msa0128320:intron | 40.0% | |
| AAGACAGGAGGAAACTTACT+GGG | - | chr1_3:57988005-57988024 | None:intergenic | 40.0% | |
| AGTCGAAATGGTACTTGTAG+AGG | - | chr1_3:57988254-57988273 | None:intergenic | 40.0% | |
| TTAATCCAACGTAGCTGATG+AGG | - | chr1_3:57988524-57988543 | None:intergenic | 40.0% | |
| AGCGTACCCATTGAATGAAT+TGG | + | chr1_3:57988553-57988572 | Msa0128320:three_prime_UTR | 40.0% | |
| GCGTACCCATTGAATGAATT+GGG | + | chr1_3:57988554-57988573 | Msa0128320:three_prime_UTR | 40.0% | |
| GATCCTCCAAATTTGTAACG+AGG | + | chr1_3:57988637-57988656 | Msa0128320:three_prime_UTR | 40.0% | |
| TTGCCTCGTTACAAATTTGG+AGG | - | chr1_3:57988643-57988662 | None:intergenic | 40.0% | |
| TGGATTTAGATGGAGGAGGA+TGG | - | chr1_3:57982375-57982394 | None:intergenic | 45.0% | |
| GGTTTGGATTTAGATGGAGG+AGG | - | chr1_3:57982379-57982398 | None:intergenic | 45.0% | |
| CGCCATTGAATGAAAGGGTT+TGG | - | chr1_3:57982395-57982414 | None:intergenic | 45.0% | |
| ! | GTAGAGCGCCATTGAATGAA+AGG | - | chr1_3:57982401-57982420 | None:intergenic | 45.0% |
| !! | GAGTGTTGGTGAGGTTGATT+TGG | - | chr1_3:57982446-57982465 | None:intergenic | 45.0% |
| !! | AAAGGTGAAGAGTGTTGGTG+AGG | - | chr1_3:57982455-57982474 | None:intergenic | 45.0% |
| ! | TAGCGAAAGGTGAAGAGTGT+TGG | - | chr1_3:57982460-57982479 | None:intergenic | 45.0% |
| !! | GGTTGATGAGAAGTAGCGAA+AGG | - | chr1_3:57982473-57982492 | None:intergenic | 45.0% |
| AGAGAAGAACGCGACACATT+CGG | + | chr1_3:57982502-57982521 | Msa0128320:CDS | 45.0% | |
| TTGTCGGAGGGAACTTGAAT+GGG | - | chr1_3:57982529-57982548 | None:intergenic | 45.0% | |
| TTTGTCGGAGGGAACTTGAA+TGG | - | chr1_3:57982530-57982549 | None:intergenic | 45.0% | |
| AAGTTCCCTCCGACAAACTA+TGG | + | chr1_3:57982533-57982552 | Msa0128320:CDS | 45.0% | |
| AGTTCCCTCCGACAAACTAT+GGG | + | chr1_3:57982534-57982553 | Msa0128320:CDS | 45.0% | |
| ! | TTGTGCTCCCCATAGTTTGT+CGG | - | chr1_3:57982545-57982564 | None:intergenic | 45.0% |
| TTGGTTCAGGCATACGTTCA+CGG | - | chr1_3:57982606-57982625 | None:intergenic | 45.0% | |
| ATGCCGAAAGAGCGAATGAT+TGG | - | chr1_3:57982625-57982644 | None:intergenic | 45.0% | |
| CCAGTTTGCCAAACAACAAG+AGG | - | chr1_3:57982833-57982852 | None:intergenic | 45.0% | |
| !! | CCTCTTGTTGTTTGGCAAAC+TGG | + | chr1_3:57982830-57982849 | Msa0128320:intron | 45.0% |
| GTTGTTTGGCAAACTGGAAG+TGG | + | chr1_3:57982836-57982855 | Msa0128320:intron | 45.0% | |
| ACTAAGTCACTGTGCTCAAG+TGG | + | chr1_3:57983017-57983036 | Msa0128320:intron | 45.0% | |
| GCTAGGCTATACTTACCTTC+CGG | + | chr1_3:57983111-57983130 | Msa0128320:intron | 45.0% | |
| TTACCTTCCGGATTGAACTC+TGG | + | chr1_3:57983123-57983142 | Msa0128320:intron | 45.0% | |
| AATCCAGAGTTCAATCCGGA+AGG | - | chr1_3:57983129-57983148 | None:intergenic | 45.0% | |
| GGATTGAACTCTGGATTACC+AGG | + | chr1_3:57983132-57983151 | Msa0128320:intron | 45.0% | |
| TTACTAAGGGAAAGAGTCCC+TGG | - | chr1_3:57983153-57983172 | None:intergenic | 45.0% | |
| GGACTCTTTCCCTTAGTAAC+TGG | + | chr1_3:57983154-57983173 | Msa0128320:intron | 45.0% | |
| CTCTTTCCCTTAGTAACTGG+AGG | + | chr1_3:57983157-57983176 | Msa0128320:intron | 45.0% | |
| CACTGCAGTGATCAAATGGA+TGG | - | chr1_3:57983831-57983850 | None:intergenic | 45.0% | |
| CATCCATTTGATCACTGCAG+TGG | + | chr1_3:57983829-57983848 | Msa0128320:intron | 45.0% | |
| CATGTAACGTCTTCAAGCTG+GGG | - | chr1_3:57984179-57984198 | None:intergenic | 45.0% | |
| GCATGTAACGTCTTCAAGCT+GGG | - | chr1_3:57984180-57984199 | None:intergenic | 45.0% | |
| AGCATGTAACGTCTTCAAGC+TGG | - | chr1_3:57984181-57984200 | None:intergenic | 45.0% | |
| ACATGCTACACTTGACGCAA+AGG | + | chr1_3:57984194-57984213 | Msa0128320:CDS | 45.0% | |
| ! | CAATTTTGTGTGGTTGCCTG+AGG | + | chr1_3:57984340-57984359 | Msa0128320:intron | 45.0% |
| ! | GTCAGAAGTCTTATACCCTC+AGG | - | chr1_3:57984359-57984378 | None:intergenic | 45.0% |
| TATAAGACTTCTGACACGGC+AGG | + | chr1_3:57984364-57984383 | Msa0128320:intron | 45.0% | |
| ATAAGACTTCTGACACGGCA+GGG | + | chr1_3:57984365-57984384 | Msa0128320:intron | 45.0% | |
| ATGGCACGAGTTAAGAGTAG+CGG | - | chr1_3:57984599-57984618 | None:intergenic | 45.0% | |
| ACCTGTTCTTCTTATGGCTC+TGG | + | chr1_3:57984750-57984769 | Msa0128320:intron | 45.0% | |
| ACCAGAGCCATAAGAAGAAC+AGG | - | chr1_3:57984754-57984773 | None:intergenic | 45.0% | |
| GATGCTACACCTTTGACTCT+CGG | + | chr1_3:57985186-57985205 | Msa0128320:CDS | 45.0% | |
| ATCATGACAGTTTGTGGGAG+GGG | + | chr1_3:57985310-57985329 | Msa0128320:intron | 45.0% | |
| CTGATACATACGCGGCAAAA+TGG | - | chr1_3:57985393-57985412 | None:intergenic | 45.0% | |
| ! | CATTTTGCCGCGTATGTATC+AGG | + | chr1_3:57985391-57985410 | Msa0128320:CDS | 45.0% |
| ATTCAATCCAGTCCCTACAG+CGG | - | chr1_3:57985518-57985537 | None:intergenic | 45.0% | |
| ! | GCTAGTATTTTCCGCGAACT+TGG | + | chr1_3:57986097-57986116 | Msa0128320:intron | 45.0% |
| AATCATGGGCAGCCTGAAAA+TGG | - | chr1_3:57986174-57986193 | None:intergenic | 45.0% | |
| AGAAGCCGCAATTGTGTTGA+GGG | - | chr1_3:57986218-57986237 | None:intergenic | 45.0% | |
| AAGAAGCCGCAATTGTGTTG+AGG | - | chr1_3:57986219-57986238 | None:intergenic | 45.0% | |
| ACAGGCATAATACTGCTTCC+CGG | - | chr1_3:57986431-57986450 | None:intergenic | 45.0% | |
| CCTTCCCCTGAAACAGAATA+AGG | - | chr1_3:57986565-57986584 | None:intergenic | 45.0% | |
| CCTTATTCTGTTTCAGGGGA+AGG | + | chr1_3:57986562-57986581 | Msa0128320:intron | 45.0% | |
| CATAGTCAAAGCCTCACACT+GGG | - | chr1_3:57986597-57986616 | None:intergenic | 45.0% | |
| TTTGACTATGGTCTGTGCAC+AGG | + | chr1_3:57986607-57986626 | Msa0128320:CDS | 45.0% | |
| GCTAATAGGGTCCATGATAG+GGG | + | chr1_3:57986740-57986759 | Msa0128320:intron | 45.0% | |
| CTAATAGGGTCCATGATAGG+GGG | + | chr1_3:57986741-57986760 | Msa0128320:intron | 45.0% | |
| AACAGAACAAGATGGCAAGC+TGG | + | chr1_3:57986824-57986843 | Msa0128320:intron | 45.0% | |
| GGGAGCTAGTTATGTTAGTG+AGG | + | chr1_3:57986852-57986871 | Msa0128320:intron | 45.0% | |
| !! | AAAGTGCTGAGCTGAAGAGA+AGG | + | chr1_3:57986925-57986944 | Msa0128320:intron | 45.0% |
| AGCATAAAGCTGGGTATGCA+AGG | + | chr1_3:57986960-57986979 | Msa0128320:intron | 45.0% | |
| GCATAAAGCTGGGTATGCAA+GGG | + | chr1_3:57986961-57986980 | Msa0128320:intron | 45.0% | |
| CATAAAGCTGGGTATGCAAG+GGG | + | chr1_3:57986962-57986981 | Msa0128320:intron | 45.0% | |
| ATCCATGTGCTTCAGGTCAT+GGG | + | chr1_3:57987166-57987185 | Msa0128320:intron | 45.0% | |
| ATCACTGTGGGAGGATCAAA+TGG | + | chr1_3:57987202-57987221 | Msa0128320:CDS | 45.0% | |
| AGGAGATTACTGGCAATCAC+TGG | - | chr1_3:57987253-57987272 | None:intergenic | 45.0% | |
| TTGTAGTCAGTGAGACTGCT+TGG | + | chr1_3:57987769-57987788 | Msa0128320:intron | 45.0% | |
| GAGGAAACTTACTGGGTTCA+AGG | - | chr1_3:57987998-57988017 | None:intergenic | 45.0% | |
| GAAGACAGGAGGAAACTTAC+TGG | - | chr1_3:57988006-57988025 | None:intergenic | 45.0% | |
| AGTGAGCTACAGAAGAAGAC+AGG | - | chr1_3:57988020-57988039 | None:intergenic | 45.0% | |
| AAGTGTAGACCCCTCTTTGT+GGG | - | chr1_3:57988128-57988147 | None:intergenic | 45.0% | |
| TAAGTGTAGACCCCTCTTTG+TGG | - | chr1_3:57988129-57988148 | None:intergenic | 45.0% | |
| CAAAGAGGGGTCTACACTTA+AGG | + | chr1_3:57988129-57988148 | Msa0128320:CDS | 45.0% | |
| CAGGAAGCTGCATTAAAGCT+TGG | + | chr1_3:57988395-57988414 | Msa0128320:intron | 45.0% | |
| ! | ACTTGGGCCAAGCATTTTCT+CGG | - | chr1_3:57988459-57988478 | None:intergenic | 45.0% |
| !!! | TTATTATCAAAATTTTATTT+TGG | + | chr1_3:57982915-57982934 | Msa0128320:intron | 5.0% |
| ! | GCGTTCTTCTCTGAAGGTAG+TGG | - | chr1_3:57982494-57982513 | None:intergenic | 50.0% |
| TGTGTCGCGTTCTTCTCTGA+AGG | - | chr1_3:57982500-57982519 | None:intergenic | 50.0% | |
| GTTCCCTCCGACAAACTATG+GGG | + | chr1_3:57982535-57982554 | Msa0128320:CDS | 50.0% | |
| TGGTTCAGGCATACGTTCAC+GGG | - | chr1_3:57982605-57982624 | None:intergenic | 50.0% | |
| AGGCCACTGCAGTGATCAAA+TGG | - | chr1_3:57983835-57983854 | None:intergenic | 50.0% | |
| GAGATTCTTGGCCATAAGCG+CGG | + | chr1_3:57983915-57983934 | Msa0128320:CDS | 50.0% | |
| CAAACTTCTCACCGCGCTTA+TGG | - | chr1_3:57983929-57983948 | None:intergenic | 50.0% | |
| CACGAGTTAAGAGTAGCGGT+GGG | - | chr1_3:57984595-57984614 | None:intergenic | 50.0% | |
| ACTCTTAACTCGTGCCATCC+TGG | + | chr1_3:57984601-57984620 | Msa0128320:intron | 50.0% | |
| TAACTCGTGCCATCCTGGTA+AGG | + | chr1_3:57984606-57984625 | Msa0128320:intron | 50.0% | |
| !!! | TCTGGTCTTGTGGTTTTGGC+TGG | + | chr1_3:57984854-57984873 | Msa0128320:intron | 50.0% |
| TACACCTTTGACTCTCGGAC+AGG | + | chr1_3:57985191-57985210 | Msa0128320:CDS | 50.0% | |
| AACTCCTGTCCGAGAGTCAA+AGG | - | chr1_3:57985198-57985217 | None:intergenic | 50.0% | |
| ACTCTCGGACAGGAGTTTAG+TGG | + | chr1_3:57985201-57985220 | Msa0128320:CDS | 50.0% | |
| !! | GGTGTCACTAGCAGTAGCTA+CGG | + | chr1_3:57985966-57985985 | Msa0128320:CDS | 50.0% |
| GATGCAAGACACCAAGTTCG+CGG | - | chr1_3:57986111-57986130 | None:intergenic | 50.0% | |
| TGGAGCCCTCAACACAATTG+CGG | + | chr1_3:57986210-57986229 | Msa0128320:CDS | 50.0% | |
| TATTGTAGTGGTCCCCGTTG+CGG | + | chr1_3:57986374-57986393 | Msa0128320:intron | 50.0% | |
| TGAGTTCACCAAGACCGCAA+CGG | - | chr1_3:57986391-57986410 | None:intergenic | 50.0% | |
| TCAAAGCCTCACACTGGGTA+GGG | - | chr1_3:57986592-57986611 | None:intergenic | 50.0% | |
| CCATAGTCAAAGCCTCACAC+TGG | - | chr1_3:57986598-57986617 | None:intergenic | 50.0% | |
| ! | CCAGTGTGAGGCTTTGACTA+TGG | + | chr1_3:57986595-57986614 | Msa0128320:CDS | 50.0% |
| AAGATGGCAAGCTGGTGTGA+GGG | + | chr1_3:57986832-57986851 | Msa0128320:intron | 50.0% | |
| GGGGAATAGTCTCTCTCTCT+TGG | + | chr1_3:57986981-57987000 | Msa0128320:intron | 50.0% | |
| !! | TCTCTTGGAGCTTTGAGCTC+TGG | + | chr1_3:57986996-57987015 | Msa0128320:intron | 50.0% |
| !! | CTCTTGGAGCTTTGAGCTCT+GGG | + | chr1_3:57986997-57987016 | Msa0128320:intron | 50.0% |
| GATCCATGTGCTTCAGGTCA+TGG | + | chr1_3:57987165-57987184 | Msa0128320:intron | 50.0% | |
| TTCCCATGACCTGAAGCACA+TGG | - | chr1_3:57987171-57987190 | None:intergenic | 50.0% | |
| CTCCCACAGTGATTGCAACA+TGG | - | chr1_3:57987195-57987214 | None:intergenic | 50.0% | |
| CATGTTGCAATCACTGTGGG+AGG | + | chr1_3:57987193-57987212 | Msa0128320:CDS | 50.0% | |
| ATCCAGGCCGTGTGAATGAA+TGG | + | chr1_3:57987656-57987675 | Msa0128320:intron | 50.0% | |
| TCCAGGCCGTGTGAATGAAT+GGG | + | chr1_3:57987657-57987676 | Msa0128320:intron | 50.0% | |
| CAGGTGCCCATTCATTCACA+CGG | - | chr1_3:57987666-57987685 | None:intergenic | 50.0% | |
| GTGAATGAATGGGCACCTGT+TGG | + | chr1_3:57987667-57987686 | Msa0128320:intron | 50.0% | |
| ACCAGCATGAGTGACTGGAA+GGG | - | chr1_3:57987970-57987989 | None:intergenic | 50.0% | |
| ATGTGACCAGCATGAGTGAC+TGG | - | chr1_3:57987975-57987994 | None:intergenic | 50.0% | |
| GAGCTACAGAAGAAGACAGG+AGG | - | chr1_3:57988017-57988036 | None:intergenic | 50.0% | |
| GTCGTTCCCGAGAAAATGCT+TGG | + | chr1_3:57988449-57988468 | Msa0128320:CDS | 50.0% | |
| ! | CTTGGGCCAAGCATTTTCTC+GGG | - | chr1_3:57988458-57988477 | None:intergenic | 50.0% |
| ! | GCTCCCCATAGTTTGTCGGA+GGG | - | chr1_3:57982541-57982560 | None:intergenic | 55.0% |
| ! | TGCTCCCCATAGTTTGTCGG+AGG | - | chr1_3:57982542-57982561 | None:intergenic | 55.0% |
| GGTTCAGGCATACGTTCACG+GGG | - | chr1_3:57982604-57982623 | None:intergenic | 55.0% | |
| GCTGCGCAAGAAGTTGCTGA+TGG | + | chr1_3:57982788-57982807 | Msa0128320:CDS | 55.0% | |
| TGTGGCTGTGCCGAACTTGA+AGG | + | chr1_3:57983618-57983637 | Msa0128320:intron | 55.0% | |
| GCACGAGTTAAGAGTAGCGG+TGG | - | chr1_3:57984596-57984615 | None:intergenic | 55.0% | |
| AAGTTCCCGCCTTACCAGGA+TGG | - | chr1_3:57984618-57984637 | None:intergenic | 55.0% | |
| ACTCAAGTTCCCGCCTTACC+AGG | - | chr1_3:57984622-57984641 | None:intergenic | 55.0% | |
| TGGTAAGGCGGGAACTTGAG+TGG | + | chr1_3:57984621-57984640 | Msa0128320:intron | 55.0% | |
| TTACTTGAGCAGCTCGCCCA+GGG | + | chr1_3:57985487-57985506 | Msa0128320:intron | 55.0% | |
| AGTTCACCAAGACCGCAACG+GGG | - | chr1_3:57986389-57986408 | None:intergenic | 55.0% | |
| GAGTTCACCAAGACCGCAAC+GGG | - | chr1_3:57986390-57986409 | None:intergenic | 55.0% | |
| !! | CTGCTTCCCGGTTCGTTTTC+AGG | - | chr1_3:57986419-57986438 | None:intergenic | 55.0% |
| GGTTAACCCTACCCAGTGTG+AGG | + | chr1_3:57986583-57986602 | Msa0128320:CDS | 55.0% | |
| GTCAAAGCCTCACACTGGGT+AGG | - | chr1_3:57986593-57986612 | None:intergenic | 55.0% | |
| ATAGGGTCCATGATAGGGGG+TGG | + | chr1_3:57986744-57986763 | Msa0128320:intron | 55.0% | |
| TAGGGTCCATGATAGGGGGT+GGG | + | chr1_3:57986745-57986764 | Msa0128320:intron | 55.0% | |
| CAAGATGGCAAGCTGGTGTG+AGG | + | chr1_3:57986831-57986850 | Msa0128320:intron | 55.0% | |
| ACCCTTCCAGTCACTCATGC+TGG | + | chr1_3:57987966-57987985 | Msa0128320:intron | 55.0% | |
| GACCAGCATGAGTGACTGGA+AGG | - | chr1_3:57987971-57987990 | None:intergenic | 55.0% | |
| TGCCAAGACAGCCCACAAAG+AGG | + | chr1_3:57988114-57988133 | Msa0128320:CDS | 55.0% | |
| GCCAAGACAGCCCACAAAGA+GGG | + | chr1_3:57988115-57988134 | Msa0128320:CDS | 55.0% | |
| CCAAGACAGCCCACAAAGAG+GGG | + | chr1_3:57988116-57988135 | Msa0128320:CDS | 55.0% | |
| TGGCTCCTCATCAGCTACGT+TGG | + | chr1_3:57988516-57988535 | Msa0128320:three_prime_UTR | 55.0% | |
| CAGCGGCAATGTGCATCACC+TGG | - | chr1_3:57984131-57984150 | None:intergenic | 60.0% | |
| CAGGTGATGCACATTGCCGC+TGG | + | chr1_3:57984129-57984148 | Msa0128320:intron | 60.0% | |
| AGACTTCTGACACGGCAGGG+AGG | + | chr1_3:57984368-57984387 | Msa0128320:intron | 60.0% | |
| GACTTCTGACACGGCAGGGA+GGG | + | chr1_3:57984369-57984388 | Msa0128320:intron | 60.0% | |
| ACTTCTGACACGGCAGGGAG+GGG | + | chr1_3:57984370-57984389 | Msa0128320:intron | 60.0% | |
| CTCGTGCCATCCTGGTAAGG+CGG | + | chr1_3:57984609-57984628 | Msa0128320:intron | 60.0% | |
| TCGTGCCATCCTGGTAAGGC+GGG | + | chr1_3:57984610-57984629 | Msa0128320:intron | 60.0% | |
| GTTACTTGAGCAGCTCGCCC+AGG | + | chr1_3:57985486-57985505 | Msa0128320:intron | 60.0% | |
| AGGGTCCATGATAGGGGGTG+GGG | + | chr1_3:57986746-57986765 | Msa0128320:intron | 60.0% | |
| TCCATGATAGGGGGTGGGGT+GGG | + | chr1_3:57986750-57986769 | Msa0128320:intron | 60.0% | |
| GCCCATTCATTCACACGGCC+TGG | - | chr1_3:57987661-57987680 | None:intergenic | 60.0% | |
| ! | CCCCTCTTTGTGGGCTGTCT+TGG | - | chr1_3:57988119-57988138 | None:intergenic | 60.0% |
| CCCTACAGCGGTACCACCCT+GGG | - | chr1_3:57985506-57985525 | None:intergenic | 65.0% | |
| CCCAGGGTGGTACCGCTGTA+GGG | + | chr1_3:57985503-57985522 | Msa0128320:CDS | 65.0% | |
| TCCCTACAGCGGTACCACCC+TGG | - | chr1_3:57985507-57985526 | None:intergenic | 65.0% | |
| GGTGGTACCGCTGTAGGGAC+TGG | + | chr1_3:57985508-57985527 | Msa0128320:CDS | 65.0% | |
| AGTGGTCCCCGTTGCGGTCT+TGG | + | chr1_3:57986380-57986399 | Msa0128320:intron | 65.0% | |
| GTCCATGATAGGGGGTGGGG+TGG | + | chr1_3:57986749-57986768 | Msa0128320:intron | 65.0% | |
| ACCCACCCCACCCCCTATCA+TGG | - | chr1_3:57986754-57986773 | None:intergenic | 65.0% | |
| ATGATAGGGGGTGGGGTGGG+TGG | + | chr1_3:57986753-57986772 | Msa0128320:intron | 65.0% | |
| TGATAGGGGGTGGGGTGGGT+GGG | + | chr1_3:57986754-57986773 | Msa0128320:intron | 65.0% | |
| GCGGCGTCGCGTACCCTGAT+TGG | + | chr1_3:57982320-57982339 | Msa0128320:five_prime_UTR | 70.0% | |
| TCTGACACGGCAGGGAGGGG+AGG | + | chr1_3:57984373-57984392 | Msa0128320:intron | 70.0% | |
| CTGACACGGCAGGGAGGGGA+GGG | + | chr1_3:57984374-57984393 | Msa0128320:intron | 70.0% | |
| TGACACGGCAGGGAGGGGAG+GGG | + | chr1_3:57984375-57984394 | Msa0128320:intron | 70.0% | |
| CTTGAGCAGCTCGCCCAGGG+TGG | + | chr1_3:57985490-57985509 | Msa0128320:intron | 70.0% | |
| GCCCAGGGTGGTACCGCTGT+AGG | + | chr1_3:57985502-57985521 | Msa0128320:CDS | 70.0% | |
| GATAGGGGGTGGGGTGGGTG+GGG | + | chr1_3:57986755-57986774 | Msa0128320:intron | 70.0% | |
| ATAGGGGGTGGGGTGGGTGG+GGG | + | chr1_3:57986756-57986775 | Msa0128320:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 57982310 | 57988702 | 57982310 | ID=Msa0128320;Name=Msa0128320 |
| chr1_3 | mRNA | 57982310 | 57988702 | 57982310 | ID=Msa0128320-mRNA-1;Parent=Msa0128320;Name=Msa0128320-mRNA-1;_AED=0.13;_eAED=0.13;_QI=99|0.93|0.93|1|1|1|16|218|474 |
| chr1_3 | exon | 57982310 | 57982666 | 57982310 | ID=Msa0128320-mRNA-1:exon:18554;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57982737 | 57982835 | 57982737 | ID=Msa0128320-mRNA-1:exon:18555;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57983894 | 57984004 | 57983894 | ID=Msa0128320-mRNA-1:exon:18556;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57984132 | 57984215 | 57984132 | ID=Msa0128320-mRNA-1:exon:18557;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57985138 | 57985236 | 57985138 | ID=Msa0128320-mRNA-1:exon:18558;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57985362 | 57985412 | 57985362 | ID=Msa0128320-mRNA-1:exon:18559;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57985499 | 57985548 | 57985499 | ID=Msa0128320-mRNA-1:exon:18560;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57985954 | 57986035 | 57985954 | ID=Msa0128320-mRNA-1:exon:18561;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57986181 | 57986275 | 57986181 | ID=Msa0128320-mRNA-1:exon:18562;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57986382 | 57986448 | 57986382 | ID=Msa0128320-mRNA-1:exon:18563;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57986578 | 57986628 | 57986578 | ID=Msa0128320-mRNA-1:exon:18564;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57987181 | 57987276 | 57987181 | ID=Msa0128320-mRNA-1:exon:18565;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57987775 | 57987873 | 57987775 | ID=Msa0128320-mRNA-1:exon:18566;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57987976 | 57988005 | 57987976 | ID=Msa0128320-mRNA-1:exon:18567;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57988085 | 57988150 | 57988085 | ID=Msa0128320-mRNA-1:exon:18568;Parent=Msa0128320-mRNA-1 |
| chr1_3 | exon | 57988398 | 57988702 | 57988398 | ID=Msa0128320-mRNA-1:exon:18569;Parent=Msa0128320-mRNA-1 |
| chr1_3 | five_prime_UTR | 57982310 | 57982408 | 57982310 | ID=Msa0128320-mRNA-1:five_prime_utr;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57982409 | 57982666 | 57982409 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57982737 | 57982835 | 57982737 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57983894 | 57984004 | 57983894 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57984132 | 57984215 | 57984132 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57985138 | 57985236 | 57985138 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57985362 | 57985412 | 57985362 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57985499 | 57985548 | 57985499 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57985954 | 57986035 | 57985954 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57986181 | 57986275 | 57986181 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57986382 | 57986448 | 57986382 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57986578 | 57986628 | 57986578 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57987181 | 57987276 | 57987181 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57987775 | 57987873 | 57987775 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57987976 | 57988005 | 57987976 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57988085 | 57988150 | 57988085 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | CDS | 57988398 | 57988484 | 57988398 | ID=Msa0128320-mRNA-1:cds;Parent=Msa0128320-mRNA-1 |
| chr1_3 | three_prime_UTR | 57988485 | 57988702 | 57988485 | ID=Msa0128320-mRNA-1:three_prime_utr;Parent=Msa0128320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
