AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074950 MtrunA17_Chr1g0183071 98.789 743 9 0 1 743 1 743 0.0 1520
Msa0074950 MtrunA17_Chr7g0262511 66.667 783 179 11 22 743 10 771 0.0 996
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074950 AT1G04140.1 54.222 758 298 12 29 742 32 784 0.0 771
Msa0074950 AT1G04140.2 54.293 757 297 12 29 741 32 783 0.0 771
Msa0074950 AT5G43930.2 55.850 718 273 11 28 729 34 723 0.0 746
Msa0074950 AT5G43930.3 55.850 718 273 11 28 729 34 723 0.0 746
Msa0074950 AT5G43930.1 55.850 718 273 11 28 729 34 723 0.0 746
Msa0074950 AT5G43930.4 53.898 744 273 13 28 729 34 749 0.0 728
Msa0074950 AT3G49660.1 28.571 182 116 7 105 277 78 254 3.59e-12 68.6

Find 222 sgRNAs with CRISPR-Local

Find 500 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTTACCTGTAACTGATTT+TGG 0.115003 1_2:+50002771 Msa0074950:CDS
TTGGTTCTTGATTGAATTTA+TGG 0.164239 1_2:-49998968 None:intergenic
CATACCTGGTGTTGGAATTC+TGG 0.178980 1_2:-49999094 None:intergenic
TTTCGTACATGCTTGTTTCT+AGG 0.214459 1_2:-49999992 None:intergenic
TGGACCAAGAAGTTCGTTTA+TGG 0.217778 1_2:+50001516 Msa0074950:CDS
AGAACTAGAAGAATCGAATT+TGG 0.268634 1_2:-49998816 None:intergenic
AAGGATCAAATCTGAGAAAT+TGG 0.269191 1_2:-49998987 None:intergenic
TCATCCTTTCCTTCTGCTCT+TGG 0.273354 1_2:+50006099 Msa0074950:three_prime_UTR
TATATCATGTGTCCTGAAAA+TGG 0.283329 1_2:-50006166 None:intergenic
AAGATCATTGATTGTGAAAC+TGG 0.287636 1_2:+50000460 Msa0074950:CDS
ATATCTATATATTGGTGTTT+AGG 0.299581 1_2:-49998862 None:intergenic
GAACTAGAAGAATCGAATTT+GGG 0.304768 1_2:-49998815 None:intergenic
CTGAAAAGCATTGTCATTGA+TGG 0.314557 1_2:+50005107 Msa0074950:CDS
GAGCTAGCTGTGCCACCTTC+AGG 0.320449 1_2:+50002681 Msa0074950:CDS
AGCTGCAGTGGCCACTGATT+TGG 0.321943 1_2:-50002874 None:intergenic
CGACTGGATTCGATTTATAA+TGG 0.323236 1_2:-50002844 None:intergenic
TTTGATTAGGCAAAGTAGTA+TGG 0.323889 1_2:-50002374 None:intergenic
CTCTCTCTATATCTATATAT+TGG 0.325950 1_2:-49998870 None:intergenic
ATGCCAATTCTCATTTGATT+AGG 0.329540 1_2:-50002387 None:intergenic
GACCGTGGGGCAGGTAATAA+AGG 0.330319 1_2:-50000281 None:intergenic
GCACTGTTAACTTAAAAGTA+TGG 0.343310 1_2:+50002913 Msa0074950:CDS
CATCCCATAAACGAACTTCT+TGG 0.352429 1_2:-50001520 None:intergenic
GGACCAAGAAGTTCGTTTAT+GGG 0.353788 1_2:+50001517 Msa0074950:CDS
CAACTGTGTTTGCAGTGAAA+TGG 0.357749 1_2:+50003246 Msa0074950:intron
AGGCAATGAGCAGCTCTAAT+TGG 0.358191 1_2:-50003596 None:intergenic
TGACATGTTGATCTGCGTCC+TGG 0.364210 1_2:-50002208 None:intergenic
CTCTCGCTTTCCATGCCAAT+GGG 0.366859 1_2:+50001701 Msa0074950:CDS
TTGCCTAATCAAATGAGAAT+TGG 0.367098 1_2:+50002384 Msa0074950:CDS
CAAAATCAGTTACAGGTAAA+CGG 0.375548 1_2:-50002770 None:intergenic
ATACCTGGTGTTGGAATTCT+GGG 0.377546 1_2:-49999093 None:intergenic
TATCAGATATGGAACTTGTC+AGG 0.380466 1_2:+50005730 Msa0074950:CDS
CATTACAAGTACGGTCAAAC+TGG 0.380771 1_2:-50005930 None:intergenic
GAATCTTCTGAATCAAAATC+TGG 0.390715 1_2:+50000028 Msa0074950:CDS
GTTGGAATTCTGGGAGGATG+AGG 0.392412 1_2:-49999084 None:intergenic
TTCCCTGAGGAGAACATGAT+TGG 0.394808 1_2:+50005976 Msa0074950:CDS
GGATTCGATTTATAATGGTT+TGG 0.398188 1_2:-50002839 None:intergenic
GAAATAATTGCTGTTGCATC+AGG 0.399592 1_2:+50001724 Msa0074950:CDS
GTTCCGTCACCAGATTCTAA+TGG 0.400356 1_2:+50002537 Msa0074950:CDS
ACCTGAGCAGTTAAAAGATA+TGG 0.402129 1_2:-50001987 None:intergenic
TCATGTTGGCTTGCTTCGGC+TGG 0.407111 1_2:-50002453 None:intergenic
AGATTGCCAAAATCAGTTAC+AGG 0.408627 1_2:-50002777 None:intergenic
ACAAAGTTTCTCTCTCTCTA+AGG 0.420690 1_2:-49998905 None:intergenic
CCTGGATCAGCTTCCATATG+AGG 0.422073 1_2:-50003325 None:intergenic
ATTACTTGATGTGCTGAGAT+TGG 0.422477 1_2:-50003403 None:intergenic
CCTCATATGGAAGCTGATCC+AGG 0.426677 1_2:+50003325 Msa0074950:CDS
GGTATATAGAGTATCAGATA+TGG 0.427126 1_2:+50005719 Msa0074950:intron
GCATCTTTGTAGTGGGGCGC+AGG 0.430270 1_2:-50002955 None:intergenic
CTGATTTGGCAAGTTCCGAC+TGG 0.435137 1_2:-50002860 None:intergenic
TCTATTAATTTGCCGCATGA+TGG 0.442110 1_2:+50002807 Msa0074950:CDS
AACTGTGTTTGCAGTGAAAT+GGG 0.443834 1_2:+50003247 Msa0074950:intron
ACTCCAATCATGTTCTCCTC+AGG 0.445874 1_2:-50005979 None:intergenic
TTGGAATTCTGGGAGGATGA+GGG 0.446295 1_2:-49999083 None:intergenic
CAAACCGGAGCAGAATATAA+TGG 0.448038 1_2:+50002351 Msa0074950:CDS
CAAGAAAGGTTTCTATATCA+TGG 0.453405 1_2:+50006143 Msa0074950:three_prime_UTR
TCATGCGGCAAATTAATAGA+AGG 0.456728 1_2:-50002804 None:intergenic
AGCATGTACGAAAGTGTCAC+TGG 0.459638 1_2:+50000002 Msa0074950:CDS
TGCATGTATGCACCCTCATA+TGG 0.459866 1_2:+50003312 Msa0074950:CDS
CGCGTTGAACTCTCTGAGCT+TGG 0.460612 1_2:+50002498 Msa0074950:CDS
CTTGTCTTCAACACAAATAC+TGG 0.462774 1_2:-50001924 None:intergenic
AAAATCAGTTACAGGTAAAC+GGG 0.463268 1_2:-50002769 None:intergenic
GAAGACAAGGCGCTCGCTAC+GGG 0.464062 1_2:+50001938 Msa0074950:CDS
ATCTGTTGAGGAAGCATTGA+GGG 0.465688 1_2:-50002615 None:intergenic
AGCTCCCATCCATTAGAATC+TGG 0.465836 1_2:-50002546 None:intergenic
AATTGCTTGAAGGTATTAGT+TGG 0.468045 1_2:+50000484 Msa0074950:CDS
TGTACAAGAGTTTGTAATCC+TGG 0.469949 1_2:-50003343 None:intergenic
GGATGTCGAGTTGGTGATGT+TGG 0.470361 1_2:-50003382 None:intergenic
AATGTGAATGGCACTGGATC+TGG 0.470886 1_2:+50005949 Msa0074950:CDS
TGGAAAGCGAGAGATGCAAT+AGG 0.471210 1_2:-50001691 None:intergenic
TCAATGCTTCCTCAACAGAT+TGG 0.475654 1_2:+50002618 Msa0074950:CDS
AGTCGTACGTTGCTTCCTCC+AGG 0.477811 1_2:-50003447 None:intergenic
TTGAACAGTCAAAGCAAGAA+AGG 0.478577 1_2:+50006129 Msa0074950:three_prime_UTR
TGAGCTCCGGATATATTCCC+TGG 0.480311 1_2:+50003429 Msa0074950:CDS
GGTTGTAGGAAGGAAAGCTT+AGG 0.485120 1_2:+50005902 Msa0074950:intron
CTATTAATTTGCCGCATGAT+GGG 0.485445 1_2:+50002808 Msa0074950:CDS
CTTCCTCCAGGGAATATATC+CGG 0.487419 1_2:-50003435 None:intergenic
GATACTTGCTAGTGGGAGCT+TGG 0.487519 1_2:+50001496 Msa0074950:CDS
AAATTTGATTTGCAGGGTCG+AGG 0.490414 1_2:+50000223 Msa0074950:intron
TCATTGCCTGACTTCAATCC+AGG 0.496863 1_2:+50003610 Msa0074950:CDS
AACTGACCTGGATTGAAGTC+AGG 0.498949 1_2:-50003616 None:intergenic
GACATGTTGATCTGCGTCCT+GGG 0.499424 1_2:-50002207 None:intergenic
GGAAAATTCATACCTGGTGT+TGG 0.500969 1_2:-49999102 None:intergenic
ATCATCAATATATACAGTCT+TGG 0.501445 1_2:+50005139 Msa0074950:CDS
ATCAAGTAATGTATGAGCTC+CGG 0.501752 1_2:+50003416 Msa0074950:CDS
ATGTTGGAAGTCCAGGCTCC+TGG 0.502548 1_2:-50003366 None:intergenic
ATGAAGTTCCGCTGATTCCA+TGG 0.504022 1_2:-49999042 None:intergenic
GTTGGTGATGTTGGAAGTCC+AGG 0.505185 1_2:-50003373 None:intergenic
GGCATCAATAACCTCACAAT+GGG 0.506104 1_2:+50002405 Msa0074950:CDS
GAATTGAGATTAAAGAAAGA+AGG 0.506659 1_2:-49999006 None:intergenic
TTGGTGTTTAGGAGGAATAA+CGG 0.507182 1_2:-49998851 None:intergenic
AACAGCAATTATTTCCCCAT+TGG 0.507326 1_2:-50001716 None:intergenic
GAGCATATTCTGCTCGCCTA+TGG 0.507585 1_2:+50005065 Msa0074950:CDS
ACTAACCATCCTTGCAGAAA+AGG 0.507866 1_2:-50002570 None:intergenic
CAAAGTGTGGTCTCCTCTCA+TGG 0.508856 1_2:+50000080 Msa0074950:CDS
TGAAGACAAGGCGCTCGCTA+CGG 0.509890 1_2:+50001937 Msa0074950:CDS
TGCAGGTATGCTGATGCCAT+TGG 0.509948 1_2:-50002709 None:intergenic
CAATTATTTCCCCATTGGCA+TGG 0.510982 1_2:-50001711 None:intergenic
TTGGCCACAGAAGGACGCCT+TGG 0.512523 1_2:+50000503 Msa0074950:CDS
TGGCCACAGAAGGACGCCTT+GGG 0.514365 1_2:+50000504 Msa0074950:CDS
TCTATATATTGGTGTTTAGG+AGG 0.517216 1_2:-49998859 None:intergenic
TGTTTCGTTAACAACACAAA+CGG 0.517284 1_2:+49998939 Msa0074950:five_prime_UTR
GCTTTCTAGTGCAGAGGATG+AGG 0.517539 1_2:+50005755 Msa0074950:CDS
ACTCTTGTACACCAGGAGCC+TGG 0.517642 1_2:+50003355 Msa0074950:CDS
AGAGCTATGACGTCGACCAT+AGG 0.518312 1_2:-50005081 None:intergenic
TCTCTCGCTTTCCATGCCAA+TGG 0.519282 1_2:+50001700 Msa0074950:CDS
GACCGTACTTGTAATGTGAA+TGG 0.523270 1_2:+50005937 Msa0074950:CDS
AGGTAATAAAGGGCAATACT+TGG 0.525939 1_2:-50000270 None:intergenic
GGAAAGCGAGAGATGCAATA+GGG 0.526031 1_2:-50001690 None:intergenic
CGTCACCAGATTCTAATGGA+TGG 0.526206 1_2:+50002541 Msa0074950:CDS
TCTTTAATCTCAATTCTCCA+TGG 0.526509 1_2:+49999013 Msa0074950:exon
TTAGACGGCATCTTTGTAGT+GGG 0.528947 1_2:-50002962 None:intergenic
AATAATTAACCAAGAGCAGA+AGG 0.530368 1_2:-50006108 None:intergenic
TAACCTCACAATGGGTGGTA+GGG 0.531061 1_2:+50002413 Msa0074950:CDS
GTATCTGTCGTTGCAATGGA+TGG 0.531769 1_2:-50001478 None:intergenic
TTGTCACAAATGTTCATCCC+AGG 0.536231 1_2:+50002190 Msa0074950:CDS
TGCTCCGGTTTGAGAGCTAG+TGG 0.536252 1_2:-50002340 None:intergenic
ATCAATATATACAGTCTTGG+AGG 0.536387 1_2:+50005142 Msa0074950:CDS
TACCACATGTCGTCCTCTGC+AGG 0.539111 1_2:+50002988 Msa0074950:CDS
GCTGCAGCATTTAGTCCAGA+TGG 0.539276 1_2:+50000311 Msa0074950:CDS
TGAAACTGGAAATTGCTTGA+AGG 0.539434 1_2:+50000474 Msa0074950:CDS
ACCGTGGGGCAGGTAATAAA+GGG 0.539646 1_2:-50000280 None:intergenic
AGGTATTAGTTGGCCACAGA+AGG 0.539720 1_2:+50000494 Msa0074950:CDS
TTGGTGGTGAACAGATTAGA+TGG 0.541889 1_2:-50002654 None:intergenic
ATGGCCATTATATTCTGCTC+CGG 0.541908 1_2:-50002355 None:intergenic
CCACCCAAGGCGTCCTTCTG+TGG 0.544228 1_2:-50000507 None:intergenic
ACTTGTAATGTGAATGGCAC+TGG 0.544885 1_2:+50005943 Msa0074950:CDS
GCAGGTATGCTGATGCCATT+GGG 0.544979 1_2:-50002708 None:intergenic
CACAGCTAGCTCAACATTGG+TGG 0.546180 1_2:-50002670 None:intergenic
AAAGATATGGTGCCCCATGC+GGG 0.547922 1_2:-50001974 None:intergenic
GCCCTTTATTACCTGCCCCA+CGG 0.549246 1_2:+50000279 Msa0074950:CDS
TTGAGAGCTAGTGGGTATCT+CGG 0.549485 1_2:-50002331 None:intergenic
GCAAGTATCTGTCGTTGCAA+TGG 0.550367 1_2:-50001482 None:intergenic
ATGACAGAGGCAACATCTCA+TGG 0.552996 1_2:+50002138 Msa0074950:CDS
ATCAATAACCTCACAATGGG+TGG 0.553944 1_2:+50002408 Msa0074950:CDS
CAGGGTGCTTTCTAGTGCAG+AGG 0.555084 1_2:+50005749 Msa0074950:CDS
ATATAGAGAGAGAAAGAAAG+AGG 0.555174 1_2:+49998881 Msa0074950:five_prime_UTR
ATAACCTCACAATGGGTGGT+AGG 0.558003 1_2:+50002412 Msa0074950:CDS
GTCACCAGATTCTAATGGAT+GGG 0.560045 1_2:+50002542 Msa0074950:CDS
GCATTGAGGGAACACCAACT+TGG 0.562253 1_2:-50002602 None:intergenic
AAGTTACATGTGAAAATGTA+AGG 0.563802 1_2:+50006204 Msa0074950:three_prime_UTR
AAGATGATGACGTGGCGTCT+AGG 0.564253 1_2:-49998747 None:intergenic
CATCTTTGTAGTGGGGCGCA+GGG 0.564972 1_2:-50002954 None:intergenic
GTTAGACGGCATCTTTGTAG+TGG 0.565047 1_2:-50002963 None:intergenic
AATTCTACTCTTGACACTGG+TGG 0.566633 1_2:-50002237 None:intergenic
CAGTATTTGTGTTGAAGACA+AGG 0.566784 1_2:+50001925 Msa0074950:CDS
TGCCATTCACATTACAAGTA+CGG 0.568037 1_2:-50005939 None:intergenic
GCAATAGTAGACCGTGGGGC+AGG 0.568095 1_2:-50000290 None:intergenic
TTTCTGCAAGGATGGTTAGT+CGG 0.570950 1_2:+50002573 Msa0074950:CDS
CTCCAATCATGTTCTCCTCA+GGG 0.571222 1_2:-50005978 None:intergenic
ATCAAAGACATGGATGATGT+TGG 0.572883 1_2:-49998681 None:intergenic
ATGCCATTGGGCATTCCTGA+AGG 0.574190 1_2:-50002696 None:intergenic
CTGCAGCATTTAGTCCAGAT+GGG 0.574217 1_2:+50000312 Msa0074950:CDS
AAGCCAAAGCTTACCACCCA+AGG 0.576210 1_2:-50000520 None:intergenic
AAACCTGATTGTAAAACTGC+AGG 0.577206 1_2:-50002726 None:intergenic
CAGCATGCTAGTAATGATGT+TGG 0.580772 1_2:+50002261 Msa0074950:CDS
ATACCCACTAGCTCTCAAAC+CGG 0.582499 1_2:+50002336 Msa0074950:CDS
CTGTTCTCGTTCTAGAACAG+TGG 0.583294 1_2:+50000051 Msa0074950:CDS
CTGCAGCAATAGTAGACCGT+GGG 0.583872 1_2:-50000295 None:intergenic
TGCTGTTGCATCAGGTCACA+AGG 0.586241 1_2:+50001732 Msa0074950:CDS
GTGAAAGAACCAATCTGTTG+AGG 0.587730 1_2:-50002627 None:intergenic
TTAACCAAGAGCAGAAGGAA+AGG 0.587972 1_2:-50006103 None:intergenic
CTGGATCAGCTTCCATATGA+GGG 0.589361 1_2:-50003324 None:intergenic
TGATTCCATGGAAAATTCCA+TGG 0.590591 1_2:-49999030 None:intergenic
TAATTCTGTAGCAGCTGCAG+TGG 0.593424 1_2:-50002886 None:intergenic
GCTCCGGTTTGAGAGCTAGT+GGG 0.596135 1_2:-50002339 None:intergenic
TGTTGGTTTGAGTAGCATGC+AGG 0.596668 1_2:+50002278 Msa0074950:CDS
TCTGGTGACGGAACAATCTG+AGG 0.598901 1_2:-50002528 None:intergenic
CCTCCCAGAATTCCAACACC+AGG 0.599555 1_2:+49999090 Msa0074950:CDS
CGACATGTGGTATAGTTAGA+CGG 0.600026 1_2:-50002977 None:intergenic
ATCAGATATGGAACTTGTCA+GGG 0.600976 1_2:+50005731 Msa0074950:CDS
AAAAGATATGGTGCCCCATG+CGG 0.601223 1_2:-50001975 None:intergenic
GTCGTACGTTGCTTCCTCCA+GGG 0.604411 1_2:-50003446 None:intergenic
CCTCACAATGGGTGGTAGGG+AGG 0.605498 1_2:+50002416 Msa0074950:CDS
AGCAGAATATGCTCAGATGT+AGG 0.609510 1_2:-50005056 None:intergenic
ATTACAAACTCTTGTACACC+AGG 0.610235 1_2:+50003348 Msa0074950:CDS
TCATTTAGAATATCCTCCAC+CGG 0.610636 1_2:+50002161 Msa0074950:CDS
CAAGTATGTTGTACATTATG+CGG 0.612352 1_2:+50006260 Msa0074950:three_prime_UTR
TAGAAGAATCGAATTTGGGG+TGG 0.616324 1_2:-49998811 None:intergenic
AGCATGCAGGTTGAACAATA+CGG 0.618359 1_2:+50002291 Msa0074950:CDS
CCACAGAAGGACGCCTTGGG+TGG 0.618769 1_2:+50000507 Msa0074950:CDS
GCATGTACGAAAGTGTCACT+GGG 0.618857 1_2:+50000003 Msa0074950:CDS
CCACCTTCAGGAATGCCCAA+TGG 0.620224 1_2:+50002693 Msa0074950:CDS
CATTATAAATCGAATCCAGT+CGG 0.622471 1_2:+50002845 Msa0074950:CDS
TGGCACAGCTAGCTCAACAT+TGG 0.624707 1_2:-50002673 None:intergenic
GTCGGAACTTGCCAAATCAG+TGG 0.625008 1_2:+50002863 Msa0074950:CDS
AATCTGTTGAGGAAGCATTG+AGG 0.627493 1_2:-50002616 None:intergenic
CCATTGGGCATTCCTGAAGG+TGG 0.630429 1_2:-50002693 None:intergenic
TGGCATCAATAACCTCACAA+TGG 0.635026 1_2:+50002404 Msa0074950:CDS
TCAGTTACAGGTAAACGGGA+TGG 0.636538 1_2:-50002765 None:intergenic
AACGACAGATACTTGCTAGT+GGG 0.637390 1_2:+50001489 Msa0074950:CDS
GCTGAGATTGGATGTCGAGT+TGG 0.638438 1_2:-50003391 None:intergenic
CAACGACAGATACTTGCTAG+TGG 0.639744 1_2:+50001488 Msa0074950:CDS
TTCAGATTGCTCAATGACAG+AGG 0.641679 1_2:+50002125 Msa0074950:CDS
ACTTCAGAAGGTACCTGCAG+AGG 0.645206 1_2:-50003001 None:intergenic
AACTAGAAGAATCGAATTTG+GGG 0.645970 1_2:-49998814 None:intergenic
AGTTGTGTAAGTACCATGAG+AGG 0.649049 1_2:-50000093 None:intergenic
TTGGAGTCAATCAATGAGCA+AGG 0.650081 1_2:+50005995 Msa0074950:exon
TACTGTGTCAGTTGTACGTG+TGG 0.650194 1_2:+50001871 Msa0074950:intron
TAGACGGCATCTTTGTAGTG+GGG 0.650831 1_2:-50002961 None:intergenic
AATTGCAACTTACTGTGTGG+AGG 0.655631 1_2:-50000345 None:intergenic
GTTGTAGGAAGGAAAGCTTA+GGG 0.656714 1_2:+50005903 Msa0074950:intron
TGCAATTCTACTCTTGACAC+TGG 0.657758 1_2:-50002240 None:intergenic
CCTCCCTACCACCCATTGTG+AGG 0.659125 1_2:-50002416 None:intergenic
TGTACTTTGAATCAAAGACA+TGG 0.662048 1_2:-49998691 None:intergenic
CATCCATTAGAATCTGGTGA+CGG 0.670518 1_2:-50002540 None:intergenic
TTAGTCGGTCAAAGCCAAGT+TGG 0.670959 1_2:+50002588 Msa0074950:CDS
TACCTGCAGAGGACGACATG+TGG 0.671719 1_2:-50002990 None:intergenic
TGCAGAGGATGAGGTCAATG+TGG 0.674617 1_2:+50005764 Msa0074950:CDS
GCTGCAGCAATAGTAGACCG+TGG 0.674851 1_2:-50000296 None:intergenic
AGGGTGCATACATGCAACAC+AGG 0.677223 1_2:-50003305 None:intergenic
TGGCTATCAAACCCATCATG+CGG 0.678387 1_2:-50002819 None:intergenic
GTGCATACATGCAACACAGG+CGG 0.681773 1_2:-50003302 None:intergenic
TCTCGCTTTCCATGCCAATG+GGG 0.682220 1_2:+50001702 Msa0074950:CDS
AATCAATGATCTTAACTGTG+TGG 0.684417 1_2:-50000450 None:intergenic
AGGGCTTGTCTATGGAACCA+AGG 0.695022 1_2:+50005812 Msa0074950:CDS
GGGATGCTAGCTCATCAGAG+TGG 0.698330 1_2:+50001537 Msa0074950:CDS
TGGATCTGGTTACTTCCCTG+AGG 0.705098 1_2:+50005963 Msa0074950:CDS
ACAGTGGTAGATGCAAAGTG+TGG 0.719121 1_2:+50000067 Msa0074950:CDS
TGCAGCAATAGTAGACCGTG+GGG 0.726709 1_2:-50000294 None:intergenic
GAGGGTTGATCATGACACAG+AGG 0.745622 1_2:-49999065 None:intergenic
GCTCCGGATATATTCCCTGG+AGG 0.749636 1_2:+50003432 Msa0074950:CDS
CCTGGTGTTGGAATTCTGGG+AGG 0.755260 1_2:-49999090 None:intergenic
CATGTACGAAAGTGTCACTG+GGG 0.771233 1_2:+50000004 Msa0074950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTATTTTTAAATT+TGG + chr1_2:49999922-49999941 Msa0074950:intron 0.0%
!!! TTATTTTTATTTTTAAATTT+GGG + chr1_2:49999923-49999942 Msa0074950:intron 0.0%
!! AACTTAAAAAAAAAATACTT+AGG - chr1_2:49999243-49999262 None:intergenic 10.0%
!! TATAATCTCTATATAATTAT+TGG + chr1_2:50005510-50005529 Msa0074950:intron 10.0%
!! AATAACCACATAATTATTTA+GGG - chr1_2:49999354-49999373 None:intergenic 15.0%
!! TAATAACCACATAATTATTT+AGG - chr1_2:49999355-49999374 None:intergenic 15.0%
!! AAAATTACTTCAAAATACTT+AGG - chr1_2:49999440-49999459 None:intergenic 15.0%
!!! ATCATTTTTTACAAGTTAAT+TGG + chr1_2:49999548-49999567 Msa0074950:intron 15.0%
!!! TCATTTTTTACAAGTTAATT+GGG + chr1_2:49999549-49999568 Msa0074950:intron 15.0%
!! TAAAAATAAAAAATCATGTG+AGG - chr1_2:49999912-49999931 None:intergenic 15.0%
!!! ATTTTTAAATTTGATTTGCA+GGG + chr1_2:50000217-50000236 Msa0074950:intron 15.0%
!! ATATAAAACTATTATTCACT+TGG - chr1_2:50000617-50000636 None:intergenic 15.0%
!!! TATTTTGTTTAATTGTGATT+TGG + chr1_2:50001842-50001861 Msa0074950:intron 15.0%
!!! CTATAAAAACTATTACTTTT+TGG + chr1_2:50002048-50002067 Msa0074950:intron 15.0%
!!! ATAAATTTTAATGATATGCT+TGG - chr1_2:50003529-50003548 None:intergenic 15.0%
!!! TGAATACATTATTCTTTTTT+TGG + chr1_2:50003695-50003714 Msa0074950:intron 15.0%
!!! GAATACATTATTCTTTTTTT+GGG + chr1_2:50003696-50003715 Msa0074950:intron 15.0%
!!! CTCTTTTTTATTTTATTTTG+AGG - chr1_2:50003771-50003790 None:intergenic 15.0%
!! CTCAAAATAAAATAAAAAAG+AGG + chr1_2:50003769-50003788 Msa0074950:intron 15.0%
!! TTCAAAAATTTAAAGGTTTA+AGG - chr1_2:50003867-50003886 None:intergenic 15.0%
!! AAAATAGAAATATGATTATG+AGG - chr1_2:50004443-50004462 None:intergenic 15.0%
!! AAAATAGAAATATGATTATG+AGG - chr1_2:50004443-50004462 None:intergenic 15.0%
!! AAAATAGAAATATGATTATG+AGG - chr1_2:50004443-50004462 None:intergenic 15.0%
!!! AATCAAAAAATTACTTTTCT+TGG + chr1_2:50004991-50005010 Msa0074950:intron 15.0%
!!! AATGCACTTATTTTTTTTTA+TGG + chr1_2:50005387-50005406 Msa0074950:intron 15.0%
!!! ATGCACTTATTTTTTTTTAT+GGG + chr1_2:50005388-50005407 Msa0074950:intron 15.0%
!!! GATAATTTTCAGAAGTTTTT+GGG - chr1_2:49998787-49998806 None:intergenic 20.0%
!!! AGATAATTTTCAGAAGTTTT+TGG - chr1_2:49998788-49998807 None:intergenic 20.0%
!!! ATATCTATATATTGGTGTTT+AGG - chr1_2:49998865-49998884 None:intergenic 20.0%
!! GAATATTAACAAAGAAGATA+TGG - chr1_2:49999126-49999145 None:intergenic 20.0%
!! ATACATATGATATTCAATTC+TGG + chr1_2:49999164-49999183 Msa0074950:intron 20.0%
!! TTAAACCCTAAATAATTATG+TGG + chr1_2:49999346-49999365 Msa0074950:intron 20.0%
!!! GTTAAATTTTGAAGTTGAAT+TGG + chr1_2:49999413-49999432 Msa0074950:intron 20.0%
!!! CATTTTTAAATTTGATTTGC+AGG + chr1_2:50000216-50000235 Msa0074950:intron 20.0%
!! AAAAGAAATGAAAAGGAAAA+AGG - chr1_2:50000561-50000580 None:intergenic 20.0%
!! AATAAACTAATTGATCAAGT+CGG - chr1_2:50000714-50000733 None:intergenic 20.0%
!!! TTACTTAACTTCCTTTTATT+AGG - chr1_2:50000851-50000870 None:intergenic 20.0%
!! ATATATCTCATCAAACTTAA+TGG - chr1_2:50000932-50000951 None:intergenic 20.0%
!!! TTTGATTCTTTTGTACTTTT+TGG + chr1_2:50001233-50001252 Msa0074950:intron 20.0%
!!! TTGATTCTTTTGTACTTTTT+GGG + chr1_2:50001234-50001253 Msa0074950:intron 20.0%
!!! TTGTTTTTATAGTCTTCATT+TGG + chr1_2:50001424-50001443 Msa0074950:intron 20.0%
!!! ATTTGGAATAATGTGTTAAT+CGG + chr1_2:50001441-50001460 Msa0074950:intron 20.0%
!! ATGTGATTAACAATAGAAAA+GGG - chr1_2:50001602-50001621 None:intergenic 20.0%
!! AATGTGATTAACAATAGAAA+AGG - chr1_2:50001603-50001622 None:intergenic 20.0%
!! AAAGTTGTTATAGAAATGTT+TGG + chr1_2:50003176-50003195 Msa0074950:intron 20.0%
!!! TACATTTCTTTTAACAGATT+TGG + chr1_2:50003554-50003573 Msa0074950:intron 20.0%
!! TAAGGATAATTAATCCAAAT+TGG - chr1_2:50003849-50003868 None:intergenic 20.0%
!! TGCTAAAAAATTCAAAATTG+TGG - chr1_2:50003935-50003954 None:intergenic 20.0%
!!! TTACTTTCATATTGAACTTT+TGG - chr1_2:50003989-50004008 None:intergenic 20.0%
!! ATATGAAAGTAATGAAAATC+TGG + chr1_2:50003997-50004016 Msa0074950:intron 20.0%
!!! TTTTTGTGTCAAAAAAACAA+GGG - chr1_2:50004247-50004266 None:intergenic 20.0%
!!! ATTTTTGTGTCAAAAAAACA+AGG - chr1_2:50004248-50004267 None:intergenic 20.0%
!! ATGCTGAACATAAATTAAAA+AGG - chr1_2:50004409-50004428 None:intergenic 20.0%
!! ATGCTGAACATAAATTAAAA+AGG - chr1_2:50004409-50004428 None:intergenic 20.0%
!! ATGCTGAACATAAATTAAAA+AGG - chr1_2:50004409-50004428 None:intergenic 20.0%
!! AAATAGGTAAGTAAACTATT+AGG - chr1_2:50004900-50004919 None:intergenic 20.0%
!!! GATAATTTTAGATTGAGAAA+AGG - chr1_2:50005181-50005200 None:intergenic 20.0%
!! TCTAAATACCTCTAATTTAA+TGG + chr1_2:50005302-50005321 Msa0074950:intron 20.0%
!! TAATACTTCCATTAAATTAG+AGG - chr1_2:50005313-50005332 None:intergenic 20.0%
!! TAAAACACAAACAAATTCAA+AGG - chr1_2:50005699-50005718 None:intergenic 20.0%
!!! TTTGAATTTGTTTGTGTTTT+AGG + chr1_2:50005698-50005717 Msa0074950:intron 20.0%
!!! TGTCATACATTACATATTTT+TGG + chr1_2:50006018-50006037 Msa0074950:three_prime_UTR 20.0%
!!! GTCATACATTACATATTTTT+GGG + chr1_2:50006019-50006038 Msa0074950:three_prime_UTR 20.0%
!!! TCATACATTACATATTTTTG+GGG + chr1_2:50006020-50006039 Msa0074950:three_prime_UTR 20.0%
!!! GATTTTAATTTATTTTCCTG+TGG + chr1_2:50006061-50006080 Msa0074950:three_prime_UTR 20.0%
! CTCTCTCTATATCTATATAT+TGG - chr1_2:49998873-49998892 None:intergenic 25.0%
!! TTGGTTCTTGATTGAATTTA+TGG - chr1_2:49998971-49998990 None:intergenic 25.0%
! GAATTGAGATTAAAGAAAGA+AGG - chr1_2:49999009-49999028 None:intergenic 25.0%
!! TTAAGTTAGCTGAGATTTTT+AGG + chr1_2:49999312-49999331 Msa0074950:intron 25.0%
! TTATGTGGTTATTAATTCTC+AGG + chr1_2:49999361-49999380 Msa0074950:intron 25.0%
! TATGTGGTTATTAATTCTCA+GGG + chr1_2:49999362-49999381 Msa0074950:intron 25.0%
! GGGATGATAACAAAAAAAAT+TGG + chr1_2:49999569-49999588 Msa0074950:intron 25.0%
!! AAATTCGTGTATTTTTCATC+CGG - chr1_2:49999596-49999615 None:intergenic 25.0%
! AACAATAATGAATTCGACAT+TGG - chr1_2:49999815-49999834 None:intergenic 25.0%
! AAATTCACAATAAACAAGGT+GGG - chr1_2:49999861-49999880 None:intergenic 25.0%
! CTTCAAATTCACAATAAACA+AGG - chr1_2:49999865-49999884 None:intergenic 25.0%
!!! TTATTTTTAAATTTGGGCAG+TGG + chr1_2:49999929-49999948 Msa0074950:intron 25.0%
! GGTATAAATTATACACTGAA+CGG - chr1_2:50000124-50000143 None:intergenic 25.0%
!!! CAAAAGGCTTTGTTTTTATT+CGG - chr1_2:50000145-50000164 None:intergenic 25.0%
!! ATTGAATTTTTGTGTGCTTT+TGG + chr1_2:50000412-50000431 Msa0074950:intron 25.0%
! AATCATTAATCAACAACAAC+AGG - chr1_2:50000745-50000764 None:intergenic 25.0%
!! TTAACTTCCTTTTATTAGGA+CGG - chr1_2:50000847-50000866 None:intergenic 25.0%
! TTAAGTAAGAAATCTGTACT+GGG + chr1_2:50000863-50000882 Msa0074950:intron 25.0%
! ATAAACTCAACTCCATAAAT+TGG - chr1_2:50000967-50000986 None:intergenic 25.0%
! TGGTATAAAATTGAATGCAA+CGG - chr1_2:50001125-50001144 None:intergenic 25.0%
!!! TTGTAAAGTGAGTTTGATTT+TGG + chr1_2:50001161-50001180 Msa0074950:intron 25.0%
! TTCTCATATTCTGTAACTAT+GGG - chr1_2:50001349-50001368 None:intergenic 25.0%
! TGTGATTAACAATAGAAAAG+GGG - chr1_2:50001601-50001620 None:intergenic 25.0%
! TTTCTCTTTGATGAACTTAA+TGG + chr1_2:50001650-50001669 Msa0074950:intron 25.0%
! TTCTCTTTGATGAACTTAAT+GGG + chr1_2:50001651-50001670 Msa0074950:intron 25.0%
!! TTGTTTAATTGTGATTTGGA+TGG + chr1_2:50001846-50001865 Msa0074950:intron 25.0%
!! TTTCTTTTTGTCACCATATT+TGG + chr1_2:50002073-50002092 Msa0074950:intron 25.0%
!! TTCTTTTAACAGATTTGGAT+CGG + chr1_2:50003559-50003578 Msa0074950:intron 25.0%
! ATAAAGTAAATTAACTGACC+TGG - chr1_2:50003631-50003650 None:intergenic 25.0%
! ATACATGTTAACTTAACAGT+AGG + chr1_2:50004109-50004128 Msa0074950:intron 25.0%
! TACATGTTAACTTAACAGTA+GGG + chr1_2:50004110-50004129 Msa0074950:intron 25.0%
! ACTGTATTGTTTAACATTGT+AGG + chr1_2:50004319-50004338 Msa0074950:intron 25.0%
! AATATGATTATGAGGATTGA+GGG - chr1_2:50004435-50004454 None:intergenic 25.0%
! AAATATGATTATGAGGATTG+AGG - chr1_2:50004436-50004455 None:intergenic 25.0%
! AATATGATTATGAGGATTGA+GGG - chr1_2:50004435-50004454 None:intergenic 25.0%
! AAATATGATTATGAGGATTG+AGG - chr1_2:50004436-50004455 None:intergenic 25.0%
! AATATGATTATGAGGATTGA+GGG - chr1_2:50004435-50004454 None:intergenic 25.0%
! AAATATGATTATGAGGATTG+AGG - chr1_2:50004436-50004455 None:intergenic 25.0%
! TTGTTTGTGTAATACAAACT+AGG - chr1_2:50004837-50004856 None:intergenic 25.0%
! GTTTGTATTACACAAACAAA+AGG + chr1_2:50004838-50004857 Msa0074950:intron 25.0%
!!! CAAAAAATTACTTTTCTTGG+TGG + chr1_2:50004994-50005013 Msa0074950:intron 25.0%
! ATCATCAATATATACAGTCT+TGG + chr1_2:50005139-50005158 Msa0074950:CDS 25.0%
!! GTTTTGCTTACAATCAAATT+TGG + chr1_2:50005466-50005485 Msa0074950:intron 25.0%
! ATAATTATTGGTCAACAAGT+AGG + chr1_2:50005522-50005541 Msa0074950:intron 25.0%
! TTAATGTTTAGTTGTTGTGT+TGG + chr1_2:50005561-50005580 Msa0074950:intron 25.0%
!!! TTAATTTATTTTCCTGTGGA+TGG + chr1_2:50006065-50006084 Msa0074950:three_prime_UTR 25.0%
! AAGTTACATGTGAAAATGTA+AGG + chr1_2:50006204-50006223 Msa0074950:three_prime_UTR 25.0%
TGTACTTTGAATCAAAGACA+TGG - chr1_2:49998694-49998713 None:intergenic 30.0%
!! TTTTGATAAAGATGATGACG+TGG - chr1_2:49998758-49998777 None:intergenic 30.0%
AACTAGAAGAATCGAATTTG+GGG - chr1_2:49998817-49998836 None:intergenic 30.0%
GAACTAGAAGAATCGAATTT+GGG - chr1_2:49998818-49998837 None:intergenic 30.0%
AGAACTAGAAGAATCGAATT+TGG - chr1_2:49998819-49998838 None:intergenic 30.0%
! TCTATATATTGGTGTTTAGG+AGG - chr1_2:49998862-49998881 None:intergenic 30.0%
ATATAGAGAGAGAAAGAAAG+AGG + chr1_2:49998881-49998900 Msa0074950:five_prime_UTR 30.0%
TGTTTCGTTAACAACACAAA+CGG + chr1_2:49998939-49998958 Msa0074950:five_prime_UTR 30.0%
AAGGATCAAATCTGAGAAAT+TGG - chr1_2:49998990-49999009 None:intergenic 30.0%
TCTTTAATCTCAATTCTCCA+TGG + chr1_2:49999013-49999032 Msa0074950:exon 30.0%
AGATATGGAAAATTCATACC+TGG - chr1_2:49999111-49999130 None:intergenic 30.0%
!! TTCACTGTATTGATTCAACT+AGG + chr1_2:49999462-49999481 Msa0074950:intron 30.0%
!! TCACTGTATTGATTCAACTA+GGG + chr1_2:49999463-49999482 Msa0074950:intron 30.0%
! AGTTATTTGAACTTAGCTTG+AGG + chr1_2:49999493-49999512 Msa0074950:intron 30.0%
! GTTATTTGAACTTAGCTTGA+GGG + chr1_2:49999494-49999513 Msa0074950:intron 30.0%
GATAACAAAAAAAATTGGCC+CGG + chr1_2:49999574-49999593 Msa0074950:intron 30.0%
! AATTCGTGTATTTTTCATCC+GGG - chr1_2:49999595-49999614 None:intergenic 30.0%
ATGTTGTTGAATGATTGTTG+AGG + chr1_2:49999665-49999684 Msa0074950:intron 30.0%
ATTAAACTCGTTGACAACTT+AGG + chr1_2:49999688-49999707 Msa0074950:intron 30.0%
TTAAACTCGTTGACAACTTA+GGG + chr1_2:49999689-49999708 Msa0074950:intron 30.0%
! ATGTATGGTGGGAATAAATA+TGG - chr1_2:49999767-49999786 None:intergenic 30.0%
GAATTCATTATTGTTAGCTG+TGG + chr1_2:49999820-49999839 Msa0074950:intron 30.0%
CAAATTCACAATAAACAAGG+TGG - chr1_2:49999862-49999881 None:intergenic 30.0%
GAATCTTCTGAATCAAAATC+TGG + chr1_2:50000028-50000047 Msa0074950:CDS 30.0%
! TGAATTTGTTTCCTTTCTCT+AGG + chr1_2:50000172-50000191 Msa0074950:intron 30.0%
! TAATTGACTTTCCTAGAGAA+AGG - chr1_2:50000186-50000205 None:intergenic 30.0%
AAAGAGTCTGTGATTCAAAT+TGG - chr1_2:50000389-50000408 None:intergenic 30.0%
AATCAATGATCTTAACTGTG+TGG - chr1_2:50000453-50000472 None:intergenic 30.0%
! AAGATCATTGATTGTGAAAC+TGG + chr1_2:50000460-50000479 Msa0074950:CDS 30.0%
!! AATTGCTTGAAGGTATTAGT+TGG + chr1_2:50000484-50000503 Msa0074950:CDS 30.0%
CCAGACAAAAAGAAATGAAA+AGG - chr1_2:50000568-50000587 None:intergenic 30.0%
! CCTTTTCATTTCTTTTTGTC+TGG + chr1_2:50000565-50000584 Msa0074950:intron 30.0%
! TAACTTCCTTTTATTAGGAC+GGG - chr1_2:50000846-50000865 None:intergenic 30.0%
GTTAAGTAAGAAATCTGTAC+TGG + chr1_2:50000862-50000881 Msa0074950:intron 30.0%
!! TTATACCATGTTATTTCCCA+TGG + chr1_2:50001137-50001156 Msa0074950:intron 30.0%
GTTCTCATATTCTGTAACTA+TGG - chr1_2:50001350-50001369 None:intergenic 30.0%
!! GCTATTACTGAATTTGTTGT+TGG + chr1_2:50001627-50001646 Msa0074950:intron 30.0%
!! ACTGACTTGGATTAATTAAC+TGG + chr1_2:50002016-50002035 Msa0074950:intron 30.0%
TTTGATTAGGCAAAGTAGTA+TGG - chr1_2:50002377-50002396 None:intergenic 30.0%
TTGCCTAATCAAATGAGAAT+TGG + chr1_2:50002384-50002403 Msa0074950:CDS 30.0%
ATGCCAATTCTCATTTGATT+AGG - chr1_2:50002390-50002409 None:intergenic 30.0%
AAAATCAGTTACAGGTAAAC+GGG - chr1_2:50002772-50002791 None:intergenic 30.0%
CAAAATCAGTTACAGGTAAA+CGG - chr1_2:50002773-50002792 None:intergenic 30.0%
GGATTCGATTTATAATGGTT+TGG - chr1_2:50002842-50002861 None:intergenic 30.0%
CATTATAAATCGAATCCAGT+CGG + chr1_2:50002845-50002864 Msa0074950:CDS 30.0%
!!! ACTTTTAAGTTAACAGTGCA+AGG - chr1_2:50002912-50002931 None:intergenic 30.0%
GCACTGTTAACTTAAAAGTA+TGG + chr1_2:50002913-50002932 Msa0074950:CDS 30.0%
AACATAGACTGATTACTTGA+TGG + chr1_2:50003136-50003155 Msa0074950:intron 30.0%
TACTAGCAACAATTGTTGAA+AGG - chr1_2:50003476-50003495 None:intergenic 30.0%
! TGAAAGCAGGTAATTTTCAA+GGG - chr1_2:50003740-50003759 None:intergenic 30.0%
! ATGAAAGCAGGTAATTTTCA+AGG - chr1_2:50003741-50003760 None:intergenic 30.0%
!!! AATCCAAATTGGTTTTAGCA+GGG - chr1_2:50003838-50003857 None:intergenic 30.0%
!!! TAATCCAAATTGGTTTTAGC+AGG - chr1_2:50003839-50003858 None:intergenic 30.0%
GAGCTCAAAAATTGATTACT+AGG - chr1_2:50004024-50004043 None:intergenic 30.0%
TTTCTCGTGCTCATAAAAAA+AGG - chr1_2:50004184-50004203 None:intergenic 30.0%
!!! TTTTTTATGAGCACGAGAAA+TGG + chr1_2:50004184-50004203 Msa0074950:intron 30.0%
GTAATACAAACTAGGACAAA+AGG - chr1_2:50004829-50004848 None:intergenic 30.0%
CAAACAAAAGGTAAATCCAT+TGG + chr1_2:50004850-50004869 Msa0074950:intron 30.0%
GATAACAATTATAGTGCCAA+TGG - chr1_2:50004869-50004888 None:intergenic 30.0%
TGCAACTTCAAGACAAAAAT+AGG - chr1_2:50004916-50004935 None:intergenic 30.0%
! ATTTTTGTCTTGAAGTTGCA+TGG + chr1_2:50004916-50004935 Msa0074950:intron 30.0%
! TTTTTGTCTTGAAGTTGCAT+GGG + chr1_2:50004917-50004936 Msa0074950:intron 30.0%
ATCAATATATACAGTCTTGG+AGG + chr1_2:50005142-50005161 Msa0074950:CDS 30.0%
! TTCTTTTATTCGAGACATGA+GGG - chr1_2:50005250-50005269 None:intergenic 30.0%
! TTTCTTTTATTCGAGACATG+AGG - chr1_2:50005251-50005270 None:intergenic 30.0%
! CATTCTAAAAATGTCGTTCA+TGG - chr1_2:50005371-50005390 None:intergenic 30.0%
AAATACATGAATGAGATGAC+TGG - chr1_2:50005638-50005657 None:intergenic 30.0%
! GGTATATAGAGTATCAGATA+TGG + chr1_2:50005719-50005738 Msa0074950:intron 30.0%
AATAATTAACCAAGAGCAGA+AGG - chr1_2:50006111-50006130 None:intergenic 30.0%
CAAGAAAGGTTTCTATATCA+TGG + chr1_2:50006143-50006162 Msa0074950:three_prime_UTR 30.0%
TATATCATGTGTCCTGAAAA+TGG - chr1_2:50006169-50006188 None:intergenic 30.0%
CAAGTATGTTGTACATTATG+CGG + chr1_2:50006260-50006279 Msa0074950:three_prime_UTR 30.0%
ATCAAAGACATGGATGATGT+TGG - chr1_2:49998684-49998703 None:intergenic 35.0%
!!! TTTTCAGAAGTTTTTGGGTG+AGG - chr1_2:49998782-49998801 None:intergenic 35.0%
! TTGGTGTTTAGGAGGAATAA+CGG - chr1_2:49998854-49998873 None:intergenic 35.0%
ACAAAGTTTCTCTCTCTCTA+AGG - chr1_2:49998908-49998927 None:intergenic 35.0%
! ATTCTCCATGGAATTTTCCA+TGG + chr1_2:49999025-49999044 Msa0074950:exon 35.0%
TGATTCCATGGAAAATTCCA+TGG - chr1_2:49999033-49999052 None:intergenic 35.0%
TGGTTATTAATTCTCAGGGT+TGG + chr1_2:49999366-49999385 Msa0074950:intron 35.0%
GTCACACTATCAAGCATTTA+TGG - chr1_2:49999624-49999643 None:intergenic 35.0%
ATGCTAAGCATATGTATGGT+GGG - chr1_2:49999778-49999797 None:intergenic 35.0%
AAGCATGCTAAGCATATGTA+TGG - chr1_2:49999782-49999801 None:intergenic 35.0%
! TTTCGTACATGCTTGTTTCT+AGG - chr1_2:49999995-50000014 None:intergenic 35.0%
ACAAATTCACAGTCGACAAA+AGG - chr1_2:50000161-50000180 None:intergenic 35.0%
AGGTAATAAAGGGCAATACT+TGG - chr1_2:50000273-50000292 None:intergenic 35.0%
TGAAACTGGAAATTGCTTGA+AGG + chr1_2:50000474-50000493 Msa0074950:CDS 35.0%
CAAATCTTAGATCCGATTCA+AGG - chr1_2:50000688-50000707 None:intergenic 35.0%
! TCATAGTGTAGCTCTACTAT+AGG - chr1_2:50000815-50000834 None:intergenic 35.0%
TACATACCCGTCCTAATAAA+AGG + chr1_2:50000837-50000856 Msa0074950:intron 35.0%
! ACTAACCAGCTACTCAATTT+TGG + chr1_2:50001010-50001029 Msa0074950:intron 35.0%
AACAACCAAAATTGAGTAGC+TGG - chr1_2:50001018-50001037 None:intergenic 35.0%
AAACTCACTTTACAAGCCAT+GGG - chr1_2:50001156-50001175 None:intergenic 35.0%
CATGAGTACTTCTATGAAAG+AGG + chr1_2:50001263-50001282 Msa0074950:intron 35.0%
ACTTGGCATTAGAGATTACA+GGG - chr1_2:50001317-50001336 None:intergenic 35.0%
ATAATGTGTTAATCGGCTAC+AGG + chr1_2:50001448-50001467 Msa0074950:intron 35.0%
AACAATAGAAAAGGGGAGAT+GGG - chr1_2:50001594-50001613 None:intergenic 35.0%
TAACAATAGAAAAGGGGAGA+TGG - chr1_2:50001595-50001614 None:intergenic 35.0%
AACAGCAATTATTTCCCCAT+TGG - chr1_2:50001719-50001738 None:intergenic 35.0%
! GAAATAATTGCTGTTGCATC+AGG + chr1_2:50001724-50001743 Msa0074950:CDS 35.0%
TCACCAAAGGTTATAACACA+TGG - chr1_2:50001793-50001812 None:intergenic 35.0%
CTTGTCTTCAACACAAATAC+TGG - chr1_2:50001927-50001946 None:intergenic 35.0%
CAGTATTTGTGTTGAAGACA+AGG + chr1_2:50001925-50001944 Msa0074950:CDS 35.0%
!! ACCATATCTTTTAACTGCTC+AGG + chr1_2:50001986-50002005 Msa0074950:CDS 35.0%
ACCTGAGCAGTTAAAAGATA+TGG - chr1_2:50001990-50002009 None:intergenic 35.0%
! TCATTTAGAATATCCTCCAC+CGG + chr1_2:50002161-50002180 Msa0074950:CDS 35.0%
ACATTTGTGACAAAAACAGC+CGG - chr1_2:50002183-50002202 None:intergenic 35.0%
! ATACCTGCAGTTTTACAATC+AGG + chr1_2:50002723-50002742 Msa0074950:CDS 35.0%
AAACCTGATTGTAAAACTGC+AGG - chr1_2:50002729-50002748 None:intergenic 35.0%
!! CGTTTACCTGTAACTGATTT+TGG + chr1_2:50002771-50002790 Msa0074950:CDS 35.0%
AGATTGCCAAAATCAGTTAC+AGG - chr1_2:50002780-50002799 None:intergenic 35.0%
TCATGCGGCAAATTAATAGA+AGG - chr1_2:50002807-50002826 None:intergenic 35.0%
!! TCTATTAATTTGCCGCATGA+TGG + chr1_2:50002807-50002826 Msa0074950:CDS 35.0%
!! CTATTAATTTGCCGCATGAT+GGG + chr1_2:50002808-50002827 Msa0074950:CDS 35.0%
CGACTGGATTCGATTTATAA+TGG - chr1_2:50002847-50002866 None:intergenic 35.0%
GATAGGTTCATAACTTCAGA+AGG - chr1_2:50003016-50003035 None:intergenic 35.0%
ACACTATATCAATCACATGC+TGG - chr1_2:50003048-50003067 None:intergenic 35.0%
! AAATGTTTGGAGTGACTTTG+TGG + chr1_2:50003189-50003208 Msa0074950:intron 35.0%
AACTGTGTTTGCAGTGAAAT+GGG + chr1_2:50003247-50003266 Msa0074950:intron 35.0%
TCTACCACATGGTGAAAAAT+GGG - chr1_2:50003275-50003294 None:intergenic 35.0%
ATCTACCACATGGTGAAAAA+TGG - chr1_2:50003276-50003295 None:intergenic 35.0%
TGTACAAGAGTTTGTAATCC+TGG - chr1_2:50003346-50003365 None:intergenic 35.0%
ATTACAAACTCTTGTACACC+AGG + chr1_2:50003348-50003367 Msa0074950:CDS 35.0%
ATTACTTGATGTGCTGAGAT+TGG - chr1_2:50003406-50003425 None:intergenic 35.0%
ATCAAGTAATGTATGAGCTC+CGG + chr1_2:50003416-50003435 Msa0074950:CDS 35.0%
TGAGGACTAAAAATGAAAGC+AGG - chr1_2:50003753-50003772 None:intergenic 35.0%
! TTTTAGCAGGGACTAAAACT+GGG - chr1_2:50003826-50003845 None:intergenic 35.0%
! TGCGTGCAGGAAAATTTTAT+AGG + chr1_2:50004141-50004160 Msa0074950:intron 35.0%
! GCGTGCAGGAAAATTTTATA+GGG + chr1_2:50004142-50004161 Msa0074950:intron 35.0%
!!! ATGGAAGTTGGTGATTTTGT+AGG + chr1_2:50004203-50004222 Msa0074950:intron 35.0%
!!! TGGAAGTTGGTGATTTTGTA+GGG + chr1_2:50004204-50004223 Msa0074950:intron 35.0%
!! CTGAAAAGCATTGTCATTGA+TGG + chr1_2:50005107-50005126 Msa0074950:CDS 35.0%
TACAGTCTTGGAGGTAAAAA+TGG + chr1_2:50005151-50005170 Msa0074950:intron 35.0%
CAACAAGTAGGCACTATTTA+TGG + chr1_2:50005534-50005553 Msa0074950:intron 35.0%
TATCAGATATGGAACTTGTC+AGG + chr1_2:50005730-50005749 Msa0074950:CDS 35.0%
ATCAGATATGGAACTTGTCA+GGG + chr1_2:50005731-50005750 Msa0074950:CDS 35.0%
! TTGCATTCAAAAGCATACCT+TGG - chr1_2:50005832-50005851 None:intergenic 35.0%
TGCCATTCACATTACAAGTA+CGG - chr1_2:50005942-50005961 None:intergenic 35.0%
AAAAATTCACTTCCATCCAC+AGG - chr1_2:50006080-50006099 None:intergenic 35.0%
TTGAACAGTCAAAGCAAGAA+AGG + chr1_2:50006129-50006148 Msa0074950:three_prime_UTR 35.0%
!! TCTATATCATGGCCATTTTC+AGG + chr1_2:50006154-50006173 Msa0074950:three_prime_UTR 35.0%
TAGAAGAATCGAATTTGGGG+TGG - chr1_2:49998814-49998833 None:intergenic 40.0%
! GGAATTTTCCATGGAATCAG+CGG + chr1_2:49999034-49999053 Msa0074950:CDS 40.0%
! ATACCTGGTGTTGGAATTCT+GGG - chr1_2:49999096-49999115 None:intergenic 40.0%
GGAAAATTCATACCTGGTGT+TGG - chr1_2:49999105-49999124 None:intergenic 40.0%
! TTGAACTTAGCTTGAGGGTT+AGG + chr1_2:49999499-49999518 Msa0074950:intron 40.0%
CATGCTAAGCATATGTATGG+TGG - chr1_2:49999779-49999798 None:intergenic 40.0%
TTCACAATAAACAAGGTGGG+TGG - chr1_2:49999858-49999877 None:intergenic 40.0%
AGTTGTGTAAGTACCATGAG+AGG - chr1_2:50000096-50000115 None:intergenic 40.0%
! CTCTAGGAAAGTCAATTACG+AGG + chr1_2:50000188-50000207 Msa0074950:intron 40.0%
!! AAATTTGATTTGCAGGGTCG+AGG + chr1_2:50000223-50000242 Msa0074950:intron 40.0%
AATTGCAACTTACTGTGTGG+AGG - chr1_2:50000348-50000367 None:intergenic 40.0%
TCCACACAGTAAGTTGCAAT+TGG + chr1_2:50000347-50000366 Msa0074950:intron 40.0%
TCCAATTGCAACTTACTGTG+TGG - chr1_2:50000351-50000370 None:intergenic 40.0%
! TTCAAGGAGACATGGGTTAT+GGG - chr1_2:50000672-50000691 None:intergenic 40.0%
! ATTCAAGGAGACATGGGTTA+TGG - chr1_2:50000673-50000692 None:intergenic 40.0%
TAACCCATGTCTCCTTGAAT+CGG + chr1_2:50000673-50000692 Msa0074950:intron 40.0%
ACAAGCCATGGGAAATAACA+TGG - chr1_2:50001145-50001164 None:intergenic 40.0%
CAAACTCACTTTACAAGCCA+TGG - chr1_2:50001157-50001176 None:intergenic 40.0%
CACTTGGCATTAGAGATTAC+AGG - chr1_2:50001318-50001337 None:intergenic 40.0%
CTGTAATCTCTAATGCCAAG+TGG + chr1_2:50001316-50001335 Msa0074950:intron 40.0%
CAGAATATGAGAACCGTTCT+AGG + chr1_2:50001356-50001375 Msa0074950:intron 40.0%
ATCAGGACATATGCCTAGAA+CGG - chr1_2:50001372-50001391 None:intergenic 40.0%
TTCTAGGCATATGTCCTGAT+GGG + chr1_2:50001372-50001391 Msa0074950:intron 40.0%
ACAAACACTAAGACTGTGCT+AGG - chr1_2:50001408-50001427 None:intergenic 40.0%
! AACGACAGATACTTGCTAGT+GGG + chr1_2:50001489-50001508 Msa0074950:CDS 40.0%
TGGACCAAGAAGTTCGTTTA+TGG + chr1_2:50001516-50001535 Msa0074950:CDS 40.0%
GGACCAAGAAGTTCGTTTAT+GGG + chr1_2:50001517-50001536 Msa0074950:CDS 40.0%
CATCCCATAAACGAACTTCT+TGG - chr1_2:50001523-50001542 None:intergenic 40.0%
CAATTATTTCCCCATTGGCA+TGG - chr1_2:50001714-50001733 None:intergenic 40.0%
TATAACACATGGCAGGTTCT+CGG - chr1_2:50001782-50001801 None:intergenic 40.0%
CAAAGGTTATAACACATGGC+AGG - chr1_2:50001789-50001808 None:intergenic 40.0%
CTGCCATGTGTTATAACCTT+TGG + chr1_2:50001787-50001806 Msa0074950:intron 40.0%
AAGGTAGAACATGTCACCAA+AGG - chr1_2:50001806-50001825 None:intergenic 40.0%
TGTGGCACTACAAAAATGCA+AGG + chr1_2:50001889-50001908 Msa0074950:CDS 40.0%
GTGGCACTACAAAAATGCAA+GGG + chr1_2:50001890-50001909 Msa0074950:CDS 40.0%
CCTGCACATCAATCCAAATA+TGG - chr1_2:50002089-50002108 None:intergenic 40.0%
CCATATTTGGATTGATGTGC+AGG + chr1_2:50002086-50002105 Msa0074950:intron 40.0%
TTCAGATTGCTCAATGACAG+AGG + chr1_2:50002125-50002144 Msa0074950:CDS 40.0%
TTGTCACAAATGTTCATCCC+AGG + chr1_2:50002190-50002209 Msa0074950:CDS 40.0%
AATTCTACTCTTGACACTGG+TGG - chr1_2:50002240-50002259 None:intergenic 40.0%
TGCAATTCTACTCTTGACAC+TGG - chr1_2:50002243-50002262 None:intergenic 40.0%
CAGCATGCTAGTAATGATGT+TGG + chr1_2:50002261-50002280 Msa0074950:CDS 40.0%
! AGCATGCAGGTTGAACAATA+CGG + chr1_2:50002291-50002310 Msa0074950:CDS 40.0%
CAAACCGGAGCAGAATATAA+TGG + chr1_2:50002351-50002370 Msa0074950:CDS 40.0%
ATGGCCATTATATTCTGCTC+CGG - chr1_2:50002358-50002377 None:intergenic 40.0%
TGGCATCAATAACCTCACAA+TGG + chr1_2:50002404-50002423 Msa0074950:CDS 40.0%
GGCATCAATAACCTCACAAT+GGG + chr1_2:50002405-50002424 Msa0074950:CDS 40.0%
ATCAATAACCTCACAATGGG+TGG + chr1_2:50002408-50002427 Msa0074950:CDS 40.0%
!!! GTTTTCATGTTGGCTTGCTT+CGG - chr1_2:50002460-50002479 None:intergenic 40.0%
! CATGATCAGCGTTTTCATGT+TGG - chr1_2:50002470-50002489 None:intergenic 40.0%
CATCCATTAGAATCTGGTGA+CGG - chr1_2:50002543-50002562 None:intergenic 40.0%
! GTCACCAGATTCTAATGGAT+GGG + chr1_2:50002542-50002561 Msa0074950:CDS 40.0%
ACTAACCATCCTTGCAGAAA+AGG - chr1_2:50002573-50002592 None:intergenic 40.0%
TTTCTGCAAGGATGGTTAGT+CGG + chr1_2:50002573-50002592 Msa0074950:CDS 40.0%
!! ATCTGTTGAGGAAGCATTGA+GGG - chr1_2:50002618-50002637 None:intergenic 40.0%
!! AATCTGTTGAGGAAGCATTG+AGG - chr1_2:50002619-50002638 None:intergenic 40.0%
TCAATGCTTCCTCAACAGAT+TGG + chr1_2:50002618-50002637 Msa0074950:CDS 40.0%
GTGAAAGAACCAATCTGTTG+AGG - chr1_2:50002630-50002649 None:intergenic 40.0%
!! TTGGTGGTGAACAGATTAGA+TGG - chr1_2:50002657-50002676 None:intergenic 40.0%
TTAGACGGCATCTTTGTAGT+GGG - chr1_2:50002965-50002984 None:intergenic 40.0%
CGACATGTGGTATAGTTAGA+CGG - chr1_2:50002980-50002999 None:intergenic 40.0%
CAACTGTGTTTGCAGTGAAA+TGG + chr1_2:50003246-50003265 Msa0074950:intron 40.0%
!! AGCAGGTAATTTTCAAGGGA+CGG - chr1_2:50003736-50003755 None:intergenic 40.0%
!! GTTTTAGCAGGGACTAAAAC+TGG - chr1_2:50003827-50003846 None:intergenic 40.0%
AGTCCCTGCTAAAACCAATT+TGG + chr1_2:50003832-50003851 Msa0074950:intron 40.0%
CTCGTGCTCATAAAAAAAGG+TGG - chr1_2:50004181-50004200 None:intergenic 40.0%
AGCAGAATATGCTCAGATGT+AGG - chr1_2:50005059-50005078 None:intergenic 40.0%
! TGTTTAGTTGTTGTGTTGGC+TGG + chr1_2:50005565-50005584 Msa0074950:intron 40.0%
! CATGCTTTCATCCTTTTCCT+GGG + chr1_2:50005787-50005806 Msa0074950:CDS 40.0%
! ATGCTTTCATCCTTTTCCTG+GGG + chr1_2:50005788-50005807 Msa0074950:CDS 40.0%
GTTGTAGGAAGGAAAGCTTA+GGG + chr1_2:50005903-50005922 Msa0074950:intron 40.0%
CATTACAAGTACGGTCAAAC+TGG - chr1_2:50005933-50005952 None:intergenic 40.0%
GACCGTACTTGTAATGTGAA+TGG + chr1_2:50005937-50005956 Msa0074950:CDS 40.0%
ACTTGTAATGTGAATGGCAC+TGG + chr1_2:50005943-50005962 Msa0074950:CDS 40.0%
TTGGAGTCAATCAATGAGCA+AGG + chr1_2:50005995-50006014 Msa0074950:exon 40.0%
TTAACCAAGAGCAGAAGGAA+AGG - chr1_2:50006106-50006125 None:intergenic 40.0%
!! ATGAAGTTCCGCTGATTCCA+TGG - chr1_2:49999045-49999064 None:intergenic 45.0%
! TTGGAATTCTGGGAGGATGA+GGG - chr1_2:49999086-49999105 None:intergenic 45.0%
! CATACCTGGTGTTGGAATTC+TGG - chr1_2:49999097-49999116 None:intergenic 45.0%
!! CTTGATAGTGTGACAGTCAC+AGG + chr1_2:49999630-49999649 Msa0074950:intron 45.0%
!! AGCATGTACGAAAGTGTCAC+TGG + chr1_2:50000002-50000021 Msa0074950:CDS 45.0%
!! GCATGTACGAAAGTGTCACT+GGG + chr1_2:50000003-50000022 Msa0074950:CDS 45.0%
!! CATGTACGAAAGTGTCACTG+GGG + chr1_2:50000004-50000023 Msa0074950:CDS 45.0%
!! CTGTTCTCGTTCTAGAACAG+TGG + chr1_2:50000051-50000070 Msa0074950:CDS 45.0%
ACAGTGGTAGATGCAAAGTG+TGG + chr1_2:50000067-50000086 Msa0074950:CDS 45.0%
CTGCAGCATTTAGTCCAGAT+GGG + chr1_2:50000312-50000331 Msa0074950:CDS 45.0%
! GAGGCAAGAATTTTCCCATC+TGG - chr1_2:50000329-50000348 None:intergenic 45.0%
AGGTATTAGTTGGCCACAGA+AGG + chr1_2:50000494-50000513 Msa0074950:CDS 45.0%
!! AACACCTCCTGAAAGTGTTG+TGG + chr1_2:50000645-50000664 Msa0074950:intron 45.0%
!! ACACCTCCTGAAAGTGTTGT+GGG + chr1_2:50000646-50000665 Msa0074950:intron 45.0%
GATCCGATTCAAGGAGACAT+GGG - chr1_2:50000679-50000698 None:intergenic 45.0%
AGATCCGATTCAAGGAGACA+TGG - chr1_2:50000680-50000699 None:intergenic 45.0%
!! CCATAAATTGGCTCGTCTTC+TGG - chr1_2:50000955-50000974 None:intergenic 45.0%
CCAGAAGACGAGCCAATTTA+TGG + chr1_2:50000952-50000971 Msa0074950:intron 45.0%
ACTATGGGCACAAAACCACT+TGG - chr1_2:50001334-50001353 None:intergenic 45.0%
! GTTCTAGGCATATGTCCTGA+TGG + chr1_2:50001371-50001390 Msa0074950:intron 45.0%
! TAGGATTTGAAGCACCCATC+AGG - chr1_2:50001389-50001408 None:intergenic 45.0%
GTGTTAATCGGCTACAGGTT+AGG + chr1_2:50001453-50001472 Msa0074950:intron 45.0%
GTATCTGTCGTTGCAATGGA+TGG - chr1_2:50001481-50001500 None:intergenic 45.0%
GCAAGTATCTGTCGTTGCAA+TGG - chr1_2:50001485-50001504 None:intergenic 45.0%
! CAACGACAGATACTTGCTAG+TGG + chr1_2:50001488-50001507 Msa0074950:CDS 45.0%
GGAAAGCGAGAGATGCAATA+GGG - chr1_2:50001693-50001712 None:intergenic 45.0%
TGGAAAGCGAGAGATGCAAT+AGG - chr1_2:50001694-50001713 None:intergenic 45.0%
TACTGTGTCAGTTGTACGTG+TGG + chr1_2:50001871-50001890 Msa0074950:intron 45.0%
AAAAGATATGGTGCCCCATG+CGG - chr1_2:50001978-50001997 None:intergenic 45.0%
ATGACAGAGGCAACATCTCA+TGG + chr1_2:50002138-50002157 Msa0074950:CDS 45.0%
TTTGTGACAAAAACAGCCGG+TGG - chr1_2:50002180-50002199 None:intergenic 45.0%
!! TGTTGGTTTGAGTAGCATGC+AGG + chr1_2:50002278-50002297 Msa0074950:CDS 45.0%
! TTGAGAGCTAGTGGGTATCT+CGG - chr1_2:50002334-50002353 None:intergenic 45.0%
! ATACCCACTAGCTCTCAAAC+CGG + chr1_2:50002336-50002355 Msa0074950:CDS 45.0%
ATAACCTCACAATGGGTGGT+AGG + chr1_2:50002412-50002431 Msa0074950:CDS 45.0%
TAACCTCACAATGGGTGGTA+GGG + chr1_2:50002413-50002432 Msa0074950:CDS 45.0%
GTTCCGTCACCAGATTCTAA+TGG + chr1_2:50002537-50002556 Msa0074950:CDS 45.0%
CGTCACCAGATTCTAATGGA+TGG + chr1_2:50002541-50002560 Msa0074950:CDS 45.0%
AGCTCCCATCCATTAGAATC+TGG - chr1_2:50002549-50002568 None:intergenic 45.0%
TTAGTCGGTCAAAGCCAAGT+TGG + chr1_2:50002588-50002607 Msa0074950:CDS 45.0%
TCAGTTACAGGTAAACGGGA+TGG - chr1_2:50002768-50002787 None:intergenic 45.0%
TGGCTATCAAACCCATCATG+CGG - chr1_2:50002822-50002841 None:intergenic 45.0%
TAATTCTGTAGCAGCTGCAG+TGG - chr1_2:50002889-50002908 None:intergenic 45.0%
TAGACGGCATCTTTGTAGTG+GGG - chr1_2:50002964-50002983 None:intergenic 45.0%
GTTAGACGGCATCTTTGTAG+TGG - chr1_2:50002966-50002985 None:intergenic 45.0%
CATGCTGGAGCAGATATGAT+AGG - chr1_2:50003033-50003052 None:intergenic 45.0%
GCGGCTAAAAATCTACCACA+TGG - chr1_2:50003286-50003305 None:intergenic 45.0%
TGCATGTATGCACCCTCATA+TGG + chr1_2:50003312-50003331 Msa0074950:CDS 45.0%
CTGGATCAGCTTCCATATGA+GGG - chr1_2:50003327-50003346 None:intergenic 45.0%
CTTCCTCCAGGGAATATATC+CGG - chr1_2:50003438-50003457 None:intergenic 45.0%
! TGGACTAGAGTACATCTGAG+AGG - chr1_2:50003509-50003528 None:intergenic 45.0%
! AGGCAATGAGCAGCTCTAAT+TGG - chr1_2:50003599-50003618 None:intergenic 45.0%
TCATTGCCTGACTTCAATCC+AGG + chr1_2:50003610-50003629 Msa0074950:CDS 45.0%
AACTGACCTGGATTGAAGTC+AGG - chr1_2:50003619-50003638 None:intergenic 45.0%
! TAGGGAATAAAAGTGCGTGC+AGG + chr1_2:50004128-50004147 Msa0074950:intron 45.0%
TGAGCACGAGAAATGGAAGT+TGG + chr1_2:50004191-50004210 Msa0074950:intron 45.0%
! GCATGCTTTCATCCTTTTCC+TGG + chr1_2:50005786-50005805 Msa0074950:CDS 45.0%
! TGCTTTCATCCTTTTCCTGG+GGG + chr1_2:50005789-50005808 Msa0074950:CDS 45.0%
! GATTGATAACCCTTTGCTCG+TGG + chr1_2:50005878-50005897 Msa0074950:intron 45.0%
GGTTGTAGGAAGGAAAGCTT+AGG + chr1_2:50005902-50005921 Msa0074950:intron 45.0%
! AATGTGAATGGCACTGGATC+TGG + chr1_2:50005949-50005968 Msa0074950:CDS 45.0%
TTCCCTGAGGAGAACATGAT+TGG + chr1_2:50005976-50005995 Msa0074950:CDS 45.0%
CTCCAATCATGTTCTCCTCA+GGG - chr1_2:50005981-50006000 None:intergenic 45.0%
ACTCCAATCATGTTCTCCTC+AGG - chr1_2:50005982-50006001 None:intergenic 45.0%
TCATCCTTTCCTTCTGCTCT+TGG + chr1_2:50006099-50006118 Msa0074950:three_prime_UTR 45.0%
!! ATAAAAAAATAAAAAAACAA+AGG - chr1_2:50001825-50001844 None:intergenic 5.0%
!! AAAATAATTCAAAAATTTAA+AGG - chr1_2:50003874-50003893 None:intergenic 5.0%
! AAGATGATGACGTGGCGTCT+AGG - chr1_2:49998750-49998769 None:intergenic 50.0%
! GAGGGTTGATCATGACACAG+AGG - chr1_2:49999068-49999087 None:intergenic 50.0%
! GTTGGAATTCTGGGAGGATG+AGG - chr1_2:49999087-49999106 None:intergenic 50.0%
CAAAGTGTGGTCTCCTCTCA+TGG + chr1_2:50000080-50000099 Msa0074950:CDS 50.0%
ACCGTGGGGCAGGTAATAAA+GGG - chr1_2:50000283-50000302 None:intergenic 50.0%
TGCAGCAATAGTAGACCGTG+GGG - chr1_2:50000297-50000316 None:intergenic 50.0%
CTGCAGCAATAGTAGACCGT+GGG - chr1_2:50000298-50000317 None:intergenic 50.0%
GCTGCAGCATTTAGTCCAGA+TGG + chr1_2:50000311-50000330 Msa0074950:CDS 50.0%
AAGCCAAAGCTTACCACCCA+AGG - chr1_2:50000523-50000542 None:intergenic 50.0%
TATGGGCCCACAACACTTTC+AGG - chr1_2:50000655-50000674 None:intergenic 50.0%
! GATACTTGCTAGTGGGAGCT+TGG + chr1_2:50001496-50001515 Msa0074950:CDS 50.0%
TCTCTCGCTTTCCATGCCAA+TGG + chr1_2:50001700-50001719 Msa0074950:CDS 50.0%
CTCTCGCTTTCCATGCCAAT+GGG + chr1_2:50001701-50001720 Msa0074950:CDS 50.0%
TCTCGCTTTCCATGCCAATG+GGG + chr1_2:50001702-50001721 Msa0074950:CDS 50.0%
TGCTGTTGCATCAGGTCACA+AGG + chr1_2:50001732-50001751 Msa0074950:CDS 50.0%
! CTGTGCATTTTCACCCGCAT+GGG + chr1_2:50001961-50001980 Msa0074950:CDS 50.0%
! TGTGCATTTTCACCCGCATG+GGG + chr1_2:50001962-50001981 Msa0074950:CDS 50.0%
AAAGATATGGTGCCCCATGC+GGG - chr1_2:50001977-50001996 None:intergenic 50.0%
CTCAGGTGAGTGAACTGACT+TGG + chr1_2:50002003-50002022 Msa0074950:intron 50.0%
GACATGTTGATCTGCGTCCT+GGG - chr1_2:50002210-50002229 None:intergenic 50.0%
TGACATGTTGATCTGCGTCC+TGG - chr1_2:50002211-50002230 None:intergenic 50.0%
!! TCTGGTGACGGAACAATCTG+AGG - chr1_2:50002531-50002550 None:intergenic 50.0%
! AGCTGCCTTTTCTGCAAGGA+TGG + chr1_2:50002565-50002584 Msa0074950:CDS 50.0%
GCATTGAGGGAACACCAACT+TGG - chr1_2:50002605-50002624 None:intergenic 50.0%
CACAGCTAGCTCAACATTGG+TGG - chr1_2:50002673-50002692 None:intergenic 50.0%
TGGCACAGCTAGCTCAACAT+TGG - chr1_2:50002676-50002695 None:intergenic 50.0%
ATGCCATTGGGCATTCCTGA+AGG - chr1_2:50002699-50002718 None:intergenic 50.0%
GCAGGTATGCTGATGCCATT+GGG - chr1_2:50002711-50002730 None:intergenic 50.0%
TGCAGGTATGCTGATGCCAT+TGG - chr1_2:50002712-50002731 None:intergenic 50.0%
!! CTGATTTGGCAAGTTCCGAC+TGG - chr1_2:50002863-50002882 None:intergenic 50.0%
GTCGGAACTTGCCAAATCAG+TGG + chr1_2:50002863-50002882 Msa0074950:CDS 50.0%
!! ACTTCAGAAGGTACCTGCAG+AGG - chr1_2:50003004-50003023 None:intergenic 50.0%
!! GGTGCCCATTTTTCACCATG+TGG + chr1_2:50003268-50003287 Msa0074950:CDS 50.0%
GTGCATACATGCAACACAGG+CGG - chr1_2:50003305-50003324 None:intergenic 50.0%
AGGGTGCATACATGCAACAC+AGG - chr1_2:50003308-50003327 None:intergenic 50.0%
CCTGGATCAGCTTCCATATG+AGG - chr1_2:50003328-50003347 None:intergenic 50.0%
CCTCATATGGAAGCTGATCC+AGG + chr1_2:50003325-50003344 Msa0074950:CDS 50.0%
!! GTTGGTGATGTTGGAAGTCC+AGG - chr1_2:50003376-50003395 None:intergenic 50.0%
!! GGATGTCGAGTTGGTGATGT+TGG - chr1_2:50003385-50003404 None:intergenic 50.0%
GCTGAGATTGGATGTCGAGT+TGG - chr1_2:50003394-50003413 None:intergenic 50.0%
TGAGCTCCGGATATATTCCC+TGG + chr1_2:50003429-50003448 Msa0074950:CDS 50.0%
GGGCGCAGGAAAATACTGTA+AGG - chr1_2:50003806-50003825 None:intergenic 50.0%
GAGCATATTCTGCTCGCCTA+TGG + chr1_2:50005065-50005084 Msa0074950:CDS 50.0%
AGAGCTATGACGTCGACCAT+AGG - chr1_2:50005084-50005103 None:intergenic 50.0%
! GCTTTCTAGTGCAGAGGATG+AGG + chr1_2:50005755-50005774 Msa0074950:CDS 50.0%
TGCAGAGGATGAGGTCAATG+TGG + chr1_2:50005764-50005783 Msa0074950:CDS 50.0%
! TTTCATCCTTTTCCTGGGGG+AGG + chr1_2:50005792-50005811 Msa0074950:CDS 50.0%
! TTCATCCTTTTCCTGGGGGA+GGG + chr1_2:50005793-50005812 Msa0074950:CDS 50.0%
AGGGCTTGTCTATGGAACCA+AGG + chr1_2:50005812-50005831 Msa0074950:CDS 50.0%
TGATAACCCTTTGCTCGTGG+TGG + chr1_2:50005881-50005900 Msa0074950:intron 50.0%
CTACAACCACCACGAGCAAA+GGG - chr1_2:50005890-50005909 None:intergenic 50.0%
TGGATCTGGTTACTTCCCTG+AGG + chr1_2:50005963-50005982 Msa0074950:CDS 50.0%
! CCTGGTGTTGGAATTCTGGG+AGG - chr1_2:49999093-49999112 None:intergenic 55.0%
CCTCCCAGAATTCCAACACC+AGG + chr1_2:49999090-49999109 Msa0074950:CDS 55.0%
GCCCTTTATTACCTGCCCCA+CGG + chr1_2:50000279-50000298 Msa0074950:CDS 55.0%
GACCGTGGGGCAGGTAATAA+AGG - chr1_2:50000284-50000303 None:intergenic 55.0%
GCTGCAGCAATAGTAGACCG+TGG - chr1_2:50000299-50000318 None:intergenic 55.0%
! TGTGCTTTTGGCACGTGCAG+TGG + chr1_2:50000424-50000443 Msa0074950:intron 55.0%
ACGCCTTGGGTGGTAAGCTT+TGG + chr1_2:50000517-50000536 Msa0074950:intron 55.0%
GGGATGCTAGCTCATCAGAG+TGG + chr1_2:50001537-50001556 Msa0074950:CDS 55.0%
! TGAAGACAAGGCGCTCGCTA+CGG + chr1_2:50001937-50001956 Msa0074950:CDS 55.0%
! GCTGTGCATTTTCACCCGCA+TGG + chr1_2:50001960-50001979 Msa0074950:CDS 55.0%
GTGACAAAAACAGCCGGTGG+AGG - chr1_2:50002177-50002196 None:intergenic 55.0%
! GCTCCGGTTTGAGAGCTAGT+GGG - chr1_2:50002342-50002361 None:intergenic 55.0%
! TGCTCCGGTTTGAGAGCTAG+TGG - chr1_2:50002343-50002362 None:intergenic 55.0%
!! TCATGTTGGCTTGCTTCGGC+TGG - chr1_2:50002456-50002475 None:intergenic 55.0%
CGCGTTGAACTCTCTGAGCT+TGG + chr1_2:50002498-50002517 Msa0074950:CDS 55.0%
! TGGGAGCTGCCTTTTCTGCA+AGG + chr1_2:50002561-50002580 Msa0074950:CDS 55.0%
CCATTGGGCATTCCTGAAGG+TGG - chr1_2:50002696-50002715 None:intergenic 55.0%
CCACCTTCAGGAATGCCCAA+TGG + chr1_2:50002693-50002712 Msa0074950:CDS 55.0%
! AGCTGCAGTGGCCACTGATT+TGG - chr1_2:50002877-50002896 None:intergenic 55.0%
! CATCTTTGTAGTGGGGCGCA+GGG - chr1_2:50002957-50002976 None:intergenic 55.0%
TACCACATGTCGTCCTCTGC+AGG + chr1_2:50002988-50003007 Msa0074950:CDS 55.0%
TACCTGCAGAGGACGACATG+TGG - chr1_2:50002993-50003012 None:intergenic 55.0%
ACTCTTGTACACCAGGAGCC+TGG + chr1_2:50003355-50003374 Msa0074950:CDS 55.0%
ATGTTGGAAGTCCAGGCTCC+TGG - chr1_2:50003369-50003388 None:intergenic 55.0%
GCTCCGGATATATTCCCTGG+AGG + chr1_2:50003432-50003451 Msa0074950:CDS 55.0%
GTCGTACGTTGCTTCCTCCA+GGG - chr1_2:50003449-50003468 None:intergenic 55.0%
AGTCGTACGTTGCTTCCTCC+AGG - chr1_2:50003450-50003469 None:intergenic 55.0%
GGAGGGAGGGACAGAGATAT+GGG - chr1_2:50004746-50004765 None:intergenic 55.0%
AGGAGGGAGGGACAGAGATA+TGG - chr1_2:50004747-50004766 None:intergenic 55.0%
! CAGGGTGCTTTCTAGTGCAG+AGG + chr1_2:50005749-50005768 Msa0074950:CDS 55.0%
CCTACAACCACCACGAGCAA+AGG - chr1_2:50005891-50005910 None:intergenic 55.0%
CCTTTGCTCGTGGTGGTTGT+AGG + chr1_2:50005888-50005907 Msa0074950:intron 55.0%
TGCTCGTGGTGGTTGTAGGA+AGG + chr1_2:50005892-50005911 Msa0074950:intron 55.0%
GCAATAGTAGACCGTGGGGC+AGG - chr1_2:50000293-50000312 None:intergenic 60.0%
TTGGCCACAGAAGGACGCCT+TGG + chr1_2:50000503-50000522 Msa0074950:CDS 60.0%
TGGCCACAGAAGGACGCCTT+GGG + chr1_2:50000504-50000523 Msa0074950:CDS 60.0%
GGGCCCACAACACTTTCAGG+AGG - chr1_2:50000652-50000671 None:intergenic 60.0%
! GAAGACAAGGCGCTCGCTAC+GGG + chr1_2:50001938-50001957 Msa0074950:CDS 60.0%
CCTCCCTACCACCCATTGTG+AGG - chr1_2:50002419-50002438 None:intergenic 60.0%
CCTCACAATGGGTGGTAGGG+AGG + chr1_2:50002416-50002435 Msa0074950:CDS 60.0%
GAGCTAGCTGTGCCACCTTC+AGG + chr1_2:50002681-50002700 Msa0074950:CDS 60.0%
! GCATCTTTGTAGTGGGGCGC+AGG - chr1_2:50002958-50002977 None:intergenic 60.0%
CAGGGACTAAAACTGGGCGC+AGG - chr1_2:50003820-50003839 None:intergenic 60.0%
ACAAGCCCTCCCCCAGGAAA+AGG - chr1_2:50005801-50005820 None:intergenic 60.0%
! CCACCCAAGGCGTCCTTCTG+TGG - chr1_2:50000510-50000529 None:intergenic 65.0%
CCACAGAAGGACGCCTTGGG+TGG + chr1_2:50000507-50000526 Msa0074950:CDS 65.0%
CCATAGACAAGCCCTCCCCC+AGG - chr1_2:50005807-50005826 None:intergenic 65.0%
CCTGGGGGAGGGCTTGTCTA+TGG + chr1_2:50005804-50005823 Msa0074950:CDS 65.0%
GTGTGTGCGCGCGCGCAGGA+GGG - chr1_2:50004763-50004782 None:intergenic 75.0%
TGTGTGTGCGCGCGCGCAGG+AGG - chr1_2:50004764-50004783 None:intergenic 75.0%
GTGTGTGTGTGCGCGCGCGC+AGG - chr1_2:50004767-50004786 None:intergenic 75.0%
! GTGCGCGCGCGCAGGAGGGA+GGG - chr1_2:50004759-50004778 None:intergenic 80.0%
! TGTGCGCGCGCGCAGGAGGG+AGG - chr1_2:50004760-50004779 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 49998658 50006302 49998658 ID=Msa0074950;Name=Msa0074950
chr1_2 mRNA 49998658 50006302 49998658 ID=Msa0074950-mRNA-1;Parent=Msa0074950;Name=Msa0074950-mRNA-1;_AED=0.04;_eAED=0.04;_QI=374|1|1|1|1|1|13|291|743
chr1_2 exon 49998658 49999111 49998658 ID=Msa0074950-mRNA-1:exon:15337;Parent=Msa0074950-mRNA-1
chr1_2 exon 49999949 50000101 49999949 ID=Msa0074950-mRNA-1:exon:15338;Parent=Msa0074950-mRNA-1
chr1_2 exon 50000238 50000354 50000238 ID=Msa0074950-mRNA-1:exon:15339;Parent=Msa0074950-mRNA-1
chr1_2 exon 50000444 50000528 50000444 ID=Msa0074950-mRNA-1:exon:15340;Parent=Msa0074950-mRNA-1
chr1_2 exon 50001470 50001578 50001470 ID=Msa0074950-mRNA-1:exon:15341;Parent=Msa0074950-mRNA-1
chr1_2 exon 50001686 50001753 50001686 ID=Msa0074950-mRNA-1:exon:15342;Parent=Msa0074950-mRNA-1
chr1_2 exon 50001882 50002007 50001882 ID=Msa0074950-mRNA-1:exon:15343;Parent=Msa0074950-mRNA-1
chr1_2 exon 50002108 50003009 50002108 ID=Msa0074950-mRNA-1:exon:15344;Parent=Msa0074950-mRNA-1
chr1_2 exon 50003261 50003461 50003261 ID=Msa0074950-mRNA-1:exon:15345;Parent=Msa0074950-mRNA-1
chr1_2 exon 50003571 50003631 50003571 ID=Msa0074950-mRNA-1:exon:15346;Parent=Msa0074950-mRNA-1
chr1_2 exon 50005050 50005163 50005050 ID=Msa0074950-mRNA-1:exon:15347;Parent=Msa0074950-mRNA-1
chr1_2 exon 50005720 50005833 50005720 ID=Msa0074950-mRNA-1:exon:15348;Parent=Msa0074950-mRNA-1
chr1_2 exon 50005910 50006302 50005910 ID=Msa0074950-mRNA-1:exon:15349;Parent=Msa0074950-mRNA-1
chr1_2 five_prime_UTR 49998658 49999031 49998658 ID=Msa0074950-mRNA-1:five_prime_utr;Parent=Msa0074950-mRNA-1
chr1_2 CDS 49999032 49999111 49999032 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 CDS 49999949 50000101 49999949 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 CDS 50000238 50000354 50000238 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 CDS 50000444 50000528 50000444 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 CDS 50001470 50001578 50001470 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 CDS 50001686 50001753 50001686 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 CDS 50001882 50002007 50001882 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 CDS 50002108 50003009 50002108 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 CDS 50003261 50003461 50003261 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 CDS 50003571 50003631 50003571 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 CDS 50005050 50005163 50005050 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 CDS 50005720 50005833 50005720 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 CDS 50005910 50006011 50005910 ID=Msa0074950-mRNA-1:cds;Parent=Msa0074950-mRNA-1
chr1_2 three_prime_UTR 50006012 50006302 50006012 ID=Msa0074950-mRNA-1:three_prime_utr;Parent=Msa0074950-mRNA-1
Gene Sequence

>Msa0074950

ATGGAATTTTCCATGGAATCAGCGGAACTTCATCCTCTGTGTCATGATCAACCCTCATCCTCCCAGAATTCCAACACCAGTGGTAGAAATGTCTTCAGTTTGCTAGCTCAAAGAGAGATTTCACCTAGAAACAAGCATGTACGAAAGTGTCACTGGGGAGAATCTTCTGAATCAAAATCTGGCTGTTCTCGTTCTAGAACAGTGGTAGATGCAAAGTGTGGTCTCCTCTCATGGGTCGAGGCTGAGTCATTGCAGCATTTGTCAGCCAAGTATTGCCCTTTATTACCTGCCCCACGGTCTACTATTGCTGCAGCATTTAGTCCAGATGGGAAAATTCTTGCCTCCACACATGGTGACCACACAGTTAAGATCATTGATTGTGAAACTGGAAATTGCTTGAAGGTATTAGTTGGCCACAGAAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCAACGACAGATACTTGCTAGTGGGAGCTTGGACCAAGAAGTTCGTTTATGGGATGCTAGCTCATCAGAGTGGATTTTATCTCACTATTTTTATCGCCCTATTGCATCTCTCGCTTTCCATGCCAATGGGGAAATAATTGCTGTTGCATCAGGTCACAAGTTGTACGTGTGGCACTACAAAAATGCAAGGGAATTATCTTCACCAGTATTTGTGTTGAAGACAAGGCGCTCGCTACGGGCTGTGCATTTTCACCCGCATGGGGCACCATATCTTTTAACTGCTCAGGTCAATGATCTCAACTCTTCAGATTGCTCAATGACAGAGGCAACATCTCATGGTCATTTAGAATATCCTCCACCGGCTGTTTTTGTCACAAATGTTCATCCCAGGACGCAGATCAACATGTCAAGTGAACCACCAGTGTCAAGAGTAGAATTGCAGCATGCTAGTAATGATGTTGGTTTGAGTAGCATGCAGGTTGAACAATACGGTACTCGATTGTCAAACTCCGAGATACCCACTAGCTCTCAAACCGGAGCAGAATATAATGGCCATACTACTTTGCCTAATCAAATGAGAATTGGCATCAATAACCTCACAATGGGTGGTAGGGAGGCTTATGAAACAGAACCAGCCGAAGCAAGCCAACATGAAAACGCTGATCATGTTGTAAAACGCGTTGAACTCTCTGAGCTTGGTCAATTTCCTCAGATTGTTCCGTCACCAGATTCTAATGGATGGGAGCTGCCTTTTCTGCAAGGATGGTTAGTCGGTCAAAGCCAAGTTGGTGTTCCCTCAATGCTTCCTCAACAGATTGGTTCTTTCACTATGCCATCTAATCTGTTCACCACCAATGTTGAGCTAGCTGTGCCACCTTCAGGAATGCCCAATGGCATCAGCATACCTGCAGTTTTACAATCAGGTTTACAGAATCAATTTTCACCATCCCGTTTACCTGTAACTGATTTTGGCAATCTCGTTCCTTCTATTAATTTGCCGCATGATGGGTTTGATAGCCAAACCATTATAAATCGAATCCAGTCGGAACTTGCCAAATCAGTGGCCACTGCAGCTGCTACAGAATTACCTTGCACTGTTAACTTAAAAGTATGGTCATATGACTTAAAAAATCCCTGCGCCCCACTACAAAGATGCCGTCTAACTATACCACATGTCGTCCTCTGCAGTGAAATGGGTGCCCATTTTTCACCATGTGGTAGATTTTTAGCCGCCTGTGTTGCATGTATGCACCCTCATATGGAAGCTGATCCAGGATTACAAACTCTTGTACACCAGGAGCCTGGACTTCCAACATCACCAACTCGACATCCAATCTCAGCACATCAAGTAATGTATGAGCTCCGGATATATTCCCTGGAGGAAGCAACATTTGGATCGGTGCTTGTATCACGACCAATTAGAGCTGCTCATTGCCTGACTTCAATCCAGTTCTCGCCTACATCTGAGCATATTCTGCTCGCCTATGGTCGACGTCATAGCTCTCTTCTGAAAAGCATTGTCATTGATGGAGAAAAAACATCATCAATATATACAGTCTTGGAGGTATATAGAGTATCAGATATGGAACTTGTCAGGGTGCTTTCTAGTGCAGAGGATGAGGTCAATGTGGCATGCTTTCATCCTTTTCCTGGGGGAGGGCTTGTCTATGGAACCAAGGAAGGAAAGCTTAGGGTCTTCCAGTTTGACCGTACTTGTAATGTGAATGGCACTGGATCTGGTTACTTCCCTGAGGAGAACATGATTGGAGTCAATCAATGA
Protein sequence

>Msa0074950

MEFSMESAELHPLCHDQPSSSQNSNTSGRNVFSLLAQREISPRNKHVRKCHWGESSESKSGCSRSRTVVDAKCGLLSWVEAESLQHLSAKYCPLLPAPRSTIAAAFSPDGKILASTHGDHTVKIIDCETGNCLKVLVGHRRTPWVVRFHPLQRQILASGSLDQEVRLWDASSSEWILSHYFYRPIASLAFHANGEIIAVASGHKLYVWHYKNARELSSPVFVLKTRRSLRAVHFHPHGAPYLLTAQVNDLNSSDCSMTEATSHGHLEYPPPAVFVTNVHPRTQINMSSEPPVSRVELQHASNDVGLSSMQVEQYGTRLSNSEIPTSSQTGAEYNGHTTLPNQMRIGINNLTMGGREAYETEPAEASQHENADHVVKRVELSELGQFPQIVPSPDSNGWELPFLQGWLVGQSQVGVPSMLPQQIGSFTMPSNLFTTNVELAVPPSGMPNGISIPAVLQSGLQNQFSPSRLPVTDFGNLVPSINLPHDGFDSQTIINRIQSELAKSVATAAATELPCTVNLKVWSYDLKNPCAPLQRCRLTIPHVVLCSEMGAHFSPCGRFLAACVACMHPHMEADPGLQTLVHQEPGLPTSPTRHPISAHQVMYELRIYSLEEATFGSVLVSRPIRAAHCLTSIQFSPTSEHILLAYGRRHSSLLKSIVIDGEKTSSIYTVLEVYRVSDMELVRVLSSAEDEVNVACFHPFPGGGLVYGTKEGKLRVFQFDRTCNVNGTGSGYFPEENMIGVNQ*