AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0167640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167640 MtrunA17_Chr1g0183071 98.563 487 7 0 1 487 257 743 0.0 992
Msa0167640 MtrunA17_Chr7g0262511 62.706 547 143 8 1 487 226 771 0.0 639
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0167640 AT1G04140.2 48.197 527 226 10 1 485 262 783 8.15e-150 447
Msa0167640 AT1G04140.1 48.197 527 226 10 1 485 262 783 9.60e-150 447
Msa0167640 AT5G43930.2 49.692 487 203 9 1 473 265 723 2.90e-142 426
Msa0167640 AT5G43930.3 49.692 487 203 9 1 473 265 723 2.90e-142 426
Msa0167640 AT5G43930.1 49.692 487 203 9 1 473 265 723 2.90e-142 426
Msa0167640 AT5G43930.4 49.692 487 203 9 1 473 291 749 7.56e-142 425

Find 164 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTTACCTGTAACTGATTT+TGG 0.115003 1_4:+49577833 Msa0167640:CDS
TGGACCAAGAAGTTCGTTTA+TGG 0.217778 1_4:+49576577 Msa0167640:five_prime_UTR
TCACCCTTTCCTTCTGCTCT+TGG 0.281689 1_4:+49581076 Msa0167640:three_prime_UTR
TATATCATGTGTCCTGAAAA+TGG 0.283329 1_4:-49581143 None:intergenic
CTGAAAAGCATTGTCATTGA+TGG 0.314557 1_4:+49580083 Msa0167640:CDS
GAGCTAGCTGTGCCACCTTC+AGG 0.320449 1_4:+49577743 Msa0167640:CDS
AGCTGCAGTGGCCACTGATT+TGG 0.321943 1_4:-49577936 None:intergenic
CGACTGGATTCGATTTATAA+TGG 0.323236 1_4:-49577906 None:intergenic
TTTGATTAGGCAAAGTAGTA+TGG 0.323889 1_4:-49577436 None:intergenic
ATGCCAATTCTCATTTGATT+AGG 0.329540 1_4:-49577449 None:intergenic
GCACTGTTAACTTAAAAGTA+TGG 0.343310 1_4:+49577975 Msa0167640:CDS
CATCCCATAAACGAACTTCT+TGG 0.352429 1_4:-49576581 None:intergenic
GGACCAAGAAGTTCGTTTAT+GGG 0.353788 1_4:+49576578 Msa0167640:five_prime_UTR
CAACTGTGTTTGCAGTGAAA+TGG 0.357749 1_4:+49578308 Msa0167640:intron
AGGCAATGAGCAGCTCTAAT+TGG 0.358191 1_4:-49578658 None:intergenic
TGACATGTTGATCTGCGTCC+TGG 0.364210 1_4:-49577270 None:intergenic
CTCTCGCTTTCCATGCCAAT+GGG 0.366859 1_4:+49576762 Msa0167640:five_prime_UTR
TTGCCTAATCAAATGAGAAT+TGG 0.367098 1_4:+49577446 Msa0167640:CDS
CAAAATCAGTTACAGGTAAA+CGG 0.375548 1_4:-49577832 None:intergenic
TATCAGATATGGAACTTGTC+AGG 0.380466 1_4:+49580706 Msa0167640:CDS
CATTACAAGTACGGTCAAAC+TGG 0.380771 1_4:-49580906 None:intergenic
GAAATAATTGCTGTTGCATC+AGG 0.391123 1_4:+49576785 Msa0167640:five_prime_UTR
TTCCCTGAGGAGAACATGAT+TGG 0.394808 1_4:+49580952 Msa0167640:CDS
GGATTCGATTTATAATGGTT+TGG 0.398188 1_4:-49577901 None:intergenic
GTTCCGTCACCAGATTCTAA+TGG 0.400356 1_4:+49577599 Msa0167640:CDS
ACCTGAGCAGTTAAAAGATA+TGG 0.402129 1_4:-49577048 None:intergenic
TCATGTTGGCTTGCTTCGGC+TGG 0.407111 1_4:-49577515 None:intergenic
AGATTGCCAAAATCAGTTAC+AGG 0.408627 1_4:-49577839 None:intergenic
CCTGGATCAGCTTCCATATG+AGG 0.422073 1_4:-49578387 None:intergenic
ATTACTTGATGTGCTGAGAT+TGG 0.422477 1_4:-49578465 None:intergenic
CCTCATATGGAAGCTGATCC+AGG 0.426677 1_4:+49578387 Msa0167640:CDS
GGTATATAGAGTATCAGATA+TGG 0.427126 1_4:+49580695 Msa0167640:intron
GCATCTTTGTAGTGGGGCGC+AGG 0.430270 1_4:-49578017 None:intergenic
CTGATTTGGCAAGTTCCGAC+TGG 0.435137 1_4:-49577922 None:intergenic
TCTATTAATTTGCCGCATGA+TGG 0.442110 1_4:+49577869 Msa0167640:CDS
AACTGTGTTTGCAGTGAAAT+GGG 0.443834 1_4:+49578309 Msa0167640:intron
ACTCCAATCATGTTCTCCTC+AGG 0.445874 1_4:-49580955 None:intergenic
CAAACCGGAGCAGAATATAA+TGG 0.448038 1_4:+49577413 Msa0167640:CDS
CAAGAAAGGTTTCTATATCA+TGG 0.453405 1_4:+49581120 Msa0167640:three_prime_UTR
TCATGCGGCAAATTAATAGA+AGG 0.456728 1_4:-49577866 None:intergenic
TGCATGTATGCACCCTCATA+TGG 0.459866 1_4:+49578374 Msa0167640:CDS
CGCGTTGAACTCTCTGAGCT+TGG 0.460612 1_4:+49577560 Msa0167640:CDS
CTTGTCTTCAACACAAATAC+TGG 0.462774 1_4:-49576985 None:intergenic
AAAATCAGTTACAGGTAAAC+GGG 0.463268 1_4:-49577831 None:intergenic
GAAGACAAGGCGCTCGCTAC+GGG 0.464062 1_4:+49576999 Msa0167640:five_prime_UTR
ATCTGTTGAGGAAGCATTGA+GGG 0.465688 1_4:-49577677 None:intergenic
AGCTCCCATCCATTAGAATC+TGG 0.465836 1_4:-49577608 None:intergenic
TGTACAAGAGTTTGTAATCC+TGG 0.469949 1_4:-49578405 None:intergenic
GGATGTCGAGTTGGTGATGT+TGG 0.470361 1_4:-49578444 None:intergenic
AATGTGAATGGCACTGGATC+TGG 0.470886 1_4:+49580925 Msa0167640:CDS
TGGAAAGCGAGAGATGCAAT+AGG 0.471210 1_4:-49576752 None:intergenic
TCAATGCTTCCTCAACAGAT+TGG 0.475654 1_4:+49577680 Msa0167640:CDS
AGTCGTACGTTGCTTCCTCC+AGG 0.477811 1_4:-49578509 None:intergenic
TTGAACAGTCAAAGCAAGAA+AGG 0.478577 1_4:+49581106 Msa0167640:three_prime_UTR
TGAGCTCCGGATATATTCCC+TGG 0.480311 1_4:+49578491 Msa0167640:CDS
GGTTGTAGGAAGGAAAGCTT+AGG 0.485120 1_4:+49580878 Msa0167640:intron
CTATTAATTTGCCGCATGAT+GGG 0.485445 1_4:+49577870 Msa0167640:CDS
CTTCCTCCAGGGAATATATC+CGG 0.487419 1_4:-49578497 None:intergenic
GATACTTGCTAGTGGGAGCT+TGG 0.487519 1_4:+49576557 Msa0167640:five_prime_UTR
TCATTGCCTGACTTCAATCC+AGG 0.496863 1_4:+49578672 Msa0167640:CDS
AACTGACCTGGATTGAAGTC+AGG 0.498949 1_4:-49578678 None:intergenic
GACATGTTGATCTGCGTCCT+GGG 0.499424 1_4:-49577269 None:intergenic
ATCATCAATATATACAGTCT+TGG 0.501445 1_4:+49580115 Msa0167640:CDS
ATCAAGTAATGTATGAGCTC+CGG 0.501752 1_4:+49578478 Msa0167640:CDS
ATGTTGGAAGTCCAGGCTCC+TGG 0.502548 1_4:-49578428 None:intergenic
GTTGGTGATGTTGGAAGTCC+AGG 0.505185 1_4:-49578435 None:intergenic
GGCATCAATAACCTCACAAT+GGG 0.506104 1_4:+49577467 Msa0167640:CDS
AACAGCAATTATTTCCCCAT+TGG 0.507326 1_4:-49576777 None:intergenic
GAGCATATTCTGCTCGCCTA+TGG 0.507585 1_4:+49580041 Msa0167640:CDS
ACTAACCATCCTTGCAGAAA+AGG 0.507866 1_4:-49577632 None:intergenic
TGAAGACAAGGCGCTCGCTA+CGG 0.509890 1_4:+49576998 Msa0167640:five_prime_UTR
TGCAGGTATGCTGATGCCAT+TGG 0.509948 1_4:-49577771 None:intergenic
CAATTATTTCCCCATTGGCA+TGG 0.510982 1_4:-49576772 None:intergenic
GCTTTCTAGTGCAGAGGATG+AGG 0.517539 1_4:+49580731 Msa0167640:CDS
ACTCTTGTACACCAGGAGCC+TGG 0.517642 1_4:+49578417 Msa0167640:CDS
AGAGCTATGACGTCGACCAT+AGG 0.518312 1_4:-49580057 None:intergenic
TCTCTCGCTTTCCATGCCAA+TGG 0.519282 1_4:+49576761 Msa0167640:five_prime_UTR
GACCGTACTTGTAATGTGAA+TGG 0.523270 1_4:+49580913 Msa0167640:CDS
TAACCAAGAGCAGAAGGAAA+GGG 0.524017 1_4:-49581079 None:intergenic
GGAAAGCGAGAGATGCAATA+GGG 0.526031 1_4:-49576751 None:intergenic
CGTCACCAGATTCTAATGGA+TGG 0.526206 1_4:+49577603 Msa0167640:CDS
TTAGACGGCATCTTTGTAGT+GGG 0.528947 1_4:-49578024 None:intergenic
AATAATTAACCAAGAGCAGA+AGG 0.530368 1_4:-49581085 None:intergenic
TAACCTCACAATGGGTGGTA+GGG 0.531061 1_4:+49577475 Msa0167640:CDS
GTATCTGTCGTTGCAATGGA+TGG 0.531769 1_4:-49576539 None:intergenic
TTGTCACAAATGTTCATCCC+AGG 0.536231 1_4:+49577252 Msa0167640:CDS
TGCTCCGGTTTGAGAGCTAG+TGG 0.536252 1_4:-49577402 None:intergenic
ATCAATATATACAGTCTTGG+AGG 0.536387 1_4:+49580118 Msa0167640:CDS
TACCACATGTCGTCCTCTGC+AGG 0.539111 1_4:+49578050 Msa0167640:CDS
TTGGTGGTGAACAGATTAGA+TGG 0.541889 1_4:-49577716 None:intergenic
ATGGCCATTATATTCTGCTC+CGG 0.541908 1_4:-49577417 None:intergenic
ACTTGTAATGTGAATGGCAC+TGG 0.544885 1_4:+49580919 Msa0167640:CDS
GCAGGTATGCTGATGCCATT+GGG 0.544979 1_4:-49577770 None:intergenic
CACAGCTAGCTCAACATTGG+TGG 0.546180 1_4:-49577732 None:intergenic
AAAGATATGGTGCCCCATGC+GGG 0.547922 1_4:-49577035 None:intergenic
TTGAGAGCTAGTGGGTATCT+CGG 0.549485 1_4:-49577393 None:intergenic
GCAAGTATCTGTCGTTGCAA+TGG 0.550367 1_4:-49576543 None:intergenic
ATGACAGAGGCAACATCTCA+TGG 0.552996 1_4:+49577200 Msa0167640:CDS
ATCAATAACCTCACAATGGG+TGG 0.553944 1_4:+49577470 Msa0167640:CDS
CAGGGTGCTTTCTAGTGCAG+AGG 0.555084 1_4:+49580725 Msa0167640:CDS
ATAACCTCACAATGGGTGGT+AGG 0.558003 1_4:+49577474 Msa0167640:CDS
GTCACCAGATTCTAATGGAT+GGG 0.560045 1_4:+49577604 Msa0167640:CDS
TTAACCAAGAGCAGAAGGAA+AGG 0.561620 1_4:-49581080 None:intergenic
GCATTGAGGGAACACCAACT+TGG 0.562253 1_4:-49577664 None:intergenic
AAGTTACATGTGAAAATGTA+AGG 0.563802 1_4:+49581181 Msa0167640:three_prime_UTR
CATCTTTGTAGTGGGGCGCA+GGG 0.564972 1_4:-49578016 None:intergenic
GTTAGACGGCATCTTTGTAG+TGG 0.565047 1_4:-49578025 None:intergenic
AATTCTACTCTTGACACTGG+TGG 0.566633 1_4:-49577299 None:intergenic
CAGTATTTGTGTTGAAGACA+AGG 0.566784 1_4:+49576986 Msa0167640:five_prime_UTR
TGCCATTCACATTACAAGTA+CGG 0.568037 1_4:-49580915 None:intergenic
TTTCTGCAAGGATGGTTAGT+CGG 0.570950 1_4:+49577635 Msa0167640:CDS
CTCCAATCATGTTCTCCTCA+GGG 0.571222 1_4:-49580954 None:intergenic
ATGCCATTGGGCATTCCTGA+AGG 0.574190 1_4:-49577758 None:intergenic
AAACCTGATTGTAAAACTGC+AGG 0.577206 1_4:-49577788 None:intergenic
CAGCATGCTAGTAATGATGT+TGG 0.580772 1_4:+49577323 Msa0167640:CDS
ATACCCACTAGCTCTCAAAC+CGG 0.582499 1_4:+49577398 Msa0167640:CDS
GTGAAAGAACCAATCTGTTG+AGG 0.587730 1_4:-49577689 None:intergenic
CTGGATCAGCTTCCATATGA+GGG 0.589361 1_4:-49578386 None:intergenic
TGCTGTTGCATCAGGACACA+AGG 0.593272 1_4:+49576793 Msa0167640:five_prime_UTR
TAATTCTGTAGCAGCTGCAG+TGG 0.593424 1_4:-49577948 None:intergenic
GCTCCGGTTTGAGAGCTAGT+GGG 0.596135 1_4:-49577401 None:intergenic
TGTTGGTTTGAGTAGCATGC+AGG 0.596668 1_4:+49577340 Msa0167640:CDS
TCTGGTGACGGAACAATCTG+AGG 0.598901 1_4:-49577590 None:intergenic
CGACATGTGGTATAGTTAGA+CGG 0.600026 1_4:-49578039 None:intergenic
ATCAGATATGGAACTTGTCA+GGG 0.600976 1_4:+49580707 Msa0167640:CDS
AAAAGATATGGTGCCCCATG+CGG 0.601223 1_4:-49577036 None:intergenic
GTCGTACGTTGCTTCCTCCA+GGG 0.604411 1_4:-49578508 None:intergenic
CCTCACAATGGGTGGTAGGG+AGG 0.605498 1_4:+49577478 Msa0167640:CDS
AGCAGAATATGCTCAGATGT+AGG 0.609510 1_4:-49580032 None:intergenic
AGCATGCAGGTTGAACAATA+CGG 0.609677 1_4:+49577353 Msa0167640:CDS
ATTACAAACTCTTGTACACC+AGG 0.610235 1_4:+49578410 Msa0167640:CDS
TCATTTAGAATATCCTCCAC+CGG 0.610636 1_4:+49577223 Msa0167640:CDS
CAAGTATGTTGTACATTATG+CGG 0.612352 1_4:+49581237 Msa0167640:three_prime_UTR
CCACCTTCAGGAATGCCCAA+TGG 0.620224 1_4:+49577755 Msa0167640:CDS
CATTATAAATCGAATCCAGT+CGG 0.622471 1_4:+49577907 Msa0167640:CDS
TGGCACAGCTAGCTCAACAT+TGG 0.624707 1_4:-49577735 None:intergenic
GTCGGAACTTGCCAAATCAG+TGG 0.625008 1_4:+49577925 Msa0167640:CDS
AATCTGTTGAGGAAGCATTG+AGG 0.627493 1_4:-49577678 None:intergenic
CCATTGGGCATTCCTGAAGG+TGG 0.630429 1_4:-49577755 None:intergenic
TGGCATCAATAACCTCACAA+TGG 0.635026 1_4:+49577466 Msa0167640:CDS
TCAGTTACAGGTAAACGGGA+TGG 0.636538 1_4:-49577827 None:intergenic
AACGACAGATACTTGCTAGT+GGG 0.637390 1_4:+49576550 Msa0167640:five_prime_UTR
GCTGAGATTGGATGTCGAGT+TGG 0.638438 1_4:-49578453 None:intergenic
CAACGACAGATACTTGCTAG+TGG 0.639744 1_4:+49576549 Msa0167640:five_prime_UTR
TTCAGATTGCTCAATGACAG+AGG 0.641679 1_4:+49577187 Msa0167640:exon
ACTTCAGAAGGTACCTGCAG+AGG 0.645206 1_4:-49578063 None:intergenic
TTGGAGTCAATCAATGAGCA+AGG 0.650081 1_4:+49580971 Msa0167640:exon
TACTGTGTCAGTTGTACGTG+TGG 0.650194 1_4:+49576932 Msa0167640:intron
TAGACGGCATCTTTGTAGTG+GGG 0.650831 1_4:-49578023 None:intergenic
GTTGTAGGAAGGAAAGCTTA+GGG 0.656714 1_4:+49580879 Msa0167640:intron
TGCAATTCTACTCTTGACAC+TGG 0.657758 1_4:-49577302 None:intergenic
CCTCCCTACCACCCATTGTG+AGG 0.659125 1_4:-49577478 None:intergenic
CATCCATTAGAATCTGGTGA+CGG 0.670518 1_4:-49577602 None:intergenic
TTAGTCGGTCAAAGCCAAGT+TGG 0.670959 1_4:+49577650 Msa0167640:CDS
TACCTGCAGAGGACGACATG+TGG 0.671719 1_4:-49578052 None:intergenic
TGCAGAGGATGAGGTCAATG+TGG 0.674617 1_4:+49580740 Msa0167640:CDS
AGGGTGCATACATGCAACAC+AGG 0.677223 1_4:-49578367 None:intergenic
TGGCTATCAAACCCATCATG+CGG 0.678387 1_4:-49577881 None:intergenic
GTGCATACATGCAACACAGG+CGG 0.681773 1_4:-49578364 None:intergenic
TCTCGCTTTCCATGCCAATG+GGG 0.682220 1_4:+49576763 Msa0167640:five_prime_UTR
AGGGCTTGTCTATGGAACCA+AGG 0.695022 1_4:+49580788 Msa0167640:CDS
GGGATGCTAGCTCATCAGAG+TGG 0.698330 1_4:+49576598 Msa0167640:five_prime_UTR
TGGATCTGGTTACTTCCCTG+AGG 0.705098 1_4:+49580939 Msa0167640:CDS
GCTCCGGATATATTCCCTGG+AGG 0.749636 1_4:+49578494 Msa0167640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATCTCTATATAATTAT+TGG + chr1_4:49580486-49580505 Msa0167640:intron 10.0%
!!! TATTTTGTTTAATTGTGATT+TGG + chr1_4:49576903-49576922 Msa0167640:intron 15.0%
!!! CTATAAAAACTATTACTTTT+TGG + chr1_4:49577109-49577128 Msa0167640:intron 15.0%
!!! ATAAATTTTAATGATATGCT+TGG - chr1_4:49578591-49578610 None:intergenic 15.0%
!!! TGAATACATTATTCTTTTTT+TGG + chr1_4:49578757-49578776 Msa0167640:intron 15.0%
!!! GAATACATTATTCTTTTTTT+GGG + chr1_4:49578758-49578777 Msa0167640:intron 15.0%
!!! CTCTTTTTTATTTTATTTTG+AGG - chr1_4:49578833-49578852 None:intergenic 15.0%
!! CTCAAAATAAAATAAAAAAG+AGG + chr1_4:49578831-49578850 Msa0167640:intron 15.0%
!! TTCAAAAATTTAAAGGTTTA+AGG - chr1_4:49578929-49578948 None:intergenic 15.0%
!! AAAATAGAAATATGATTATG+AGG - chr1_4:49579504-49579523 None:intergenic 15.0%
!! AAAATAGAAATATGATTATG+AGG - chr1_4:49579504-49579523 None:intergenic 15.0%
!!! AATCAAAAAATTACTTTTCT+TGG + chr1_4:49579967-49579986 Msa0167640:intron 15.0%
!!! AATGCACTTATTTTTTTTTA+TGG + chr1_4:49580363-49580382 Msa0167640:intron 15.0%
!!! ATGCACTTATTTTTTTTTAT+GGG + chr1_4:49580364-49580383 Msa0167640:intron 15.0%
!!! ATTTTAATTTTATTTTCCTG+TGG + chr1_4:49581038-49581057 Msa0167640:three_prime_UTR 15.0%
!! ATGTGATTAACAATAGAAAA+GGG - chr1_4:49576663-49576682 None:intergenic 20.0%
!! AATGTGATTAACAATAGAAA+AGG - chr1_4:49576664-49576683 None:intergenic 20.0%
!! AAAGTTGTTATAGAAATGTT+TGG + chr1_4:49578238-49578257 Msa0167640:intron 20.0%
!!! TACATTTCTTTTAACAGATT+TGG + chr1_4:49578616-49578635 Msa0167640:intron 20.0%
!! TAAGGATAATTAATCCAAAT+TGG - chr1_4:49578911-49578930 None:intergenic 20.0%
!! TGCTAAAAAATTCAAAATTG+TGG - chr1_4:49578997-49579016 None:intergenic 20.0%
!!! TTACTTTCATATTGAACTTT+TGG - chr1_4:49579051-49579070 None:intergenic 20.0%
!! ATATGAAAGTAATGAAAATC+TGG + chr1_4:49579059-49579078 Msa0167640:intron 20.0%
!!! TTTTTGTGTCAAAAAAACAA+GGG - chr1_4:49579308-49579327 None:intergenic 20.0%
!!! ATTTTTGTGTCAAAAAAACA+AGG - chr1_4:49579309-49579328 None:intergenic 20.0%
!! ATGCTGAACATAAATTAAAA+AGG - chr1_4:49579470-49579489 None:intergenic 20.0%
!! ATGCTGAACATAAATTAAAA+AGG - chr1_4:49579470-49579489 None:intergenic 20.0%
!! AAATAGGTAAGTAAACTATT+AGG - chr1_4:49579876-49579895 None:intergenic 20.0%
!!! GATAATTTTAGATTGAGAAA+AGG - chr1_4:49580157-49580176 None:intergenic 20.0%
!! TCTAAATACCTCTAATTTAA+TGG + chr1_4:49580278-49580297 Msa0167640:intron 20.0%
!! TAATACTTCCATTAAATTAG+AGG - chr1_4:49580289-49580308 None:intergenic 20.0%
!! TAAAACACAAACAAATTCAA+AGG - chr1_4:49580675-49580694 None:intergenic 20.0%
!!! TTTGAATTTGTTTGTGTTTT+AGG + chr1_4:49580674-49580693 Msa0167640:intron 20.0%
!!! TGTCATACATTACATATTTT+TGG + chr1_4:49580994-49581013 Msa0167640:three_prime_UTR 20.0%
!!! GTCATACATTACATATTTTT+GGG + chr1_4:49580995-49581014 Msa0167640:three_prime_UTR 20.0%
!!! TCATACATTACATATTTTTG+GGG + chr1_4:49580996-49581015 Msa0167640:three_prime_UTR 20.0%
! TGTGATTAACAATAGAAAAG+GGG - chr1_4:49576662-49576681 None:intergenic 25.0%
! TTTCTCTTTGATGAACTTAA+TGG + chr1_4:49576711-49576730 Msa0167640:intron 25.0%
! TTCTCTTTGATGAACTTAAT+GGG + chr1_4:49576712-49576731 Msa0167640:intron 25.0%
!! TTGTTTAATTGTGATTTGGA+TGG + chr1_4:49576907-49576926 Msa0167640:intron 25.0%
!!! TTCTTTTTTGTCACCATATT+TGG + chr1_4:49577135-49577154 Msa0167640:intron 25.0%
!! TTCTTTTAACAGATTTGGAT+CGG + chr1_4:49578621-49578640 Msa0167640:intron 25.0%
! ATAAAGTAAATTAACTGACC+TGG - chr1_4:49578693-49578712 None:intergenic 25.0%
! AGTTAATTTACTTTATCACC+TGG + chr1_4:49578697-49578716 Msa0167640:intron 25.0%
! ATACATGTTAACTTAACAGT+AGG + chr1_4:49579170-49579189 Msa0167640:intron 25.0%
! TACATGTTAACTTAACAGTA+GGG + chr1_4:49579171-49579190 Msa0167640:intron 25.0%
! ACTGTATTGTTTAACATTGT+AGG + chr1_4:49579380-49579399 Msa0167640:intron 25.0%
! AATATGATTATGAGGATTGA+GGG - chr1_4:49579496-49579515 None:intergenic 25.0%
! AAATATGATTATGAGGATTG+AGG - chr1_4:49579497-49579516 None:intergenic 25.0%
! AATATGATTATGAGGATTGA+GGG - chr1_4:49579496-49579515 None:intergenic 25.0%
! AAATATGATTATGAGGATTG+AGG - chr1_4:49579497-49579516 None:intergenic 25.0%
! TTGTTTGTGTAATACAAACT+AGG - chr1_4:49579813-49579832 None:intergenic 25.0%
! GTTTGTATTACACAAACAAA+AGG + chr1_4:49579814-49579833 Msa0167640:intron 25.0%
!!! CAAAAAATTACTTTTCTTGG+TGG + chr1_4:49579970-49579989 Msa0167640:intron 25.0%
! ATCATCAATATATACAGTCT+TGG + chr1_4:49580115-49580134 Msa0167640:CDS 25.0%
!! GTTTTGCTTACAATCAAATT+TGG + chr1_4:49580442-49580461 Msa0167640:intron 25.0%
! ATAATTATTGGTCAACAAGT+AGG + chr1_4:49580498-49580517 Msa0167640:intron 25.0%
! TTAATGTTTAGTTGTTGTGT+TGG + chr1_4:49580537-49580556 Msa0167640:intron 25.0%
!!! TAATTTTATTTTCCTGTGGA+TGG + chr1_4:49581042-49581061 Msa0167640:three_prime_UTR 25.0%
! AAGTTACATGTGAAAATGTA+AGG + chr1_4:49581181-49581200 Msa0167640:three_prime_UTR 25.0%
!! GCTATTACTGAATTTGTTGT+TGG + chr1_4:49576688-49576707 Msa0167640:intron 30.0%
!! ACTGACTTGGATTAATTAAC+TGG + chr1_4:49577077-49577096 Msa0167640:intron 30.0%
TTTGATTAGGCAAAGTAGTA+TGG - chr1_4:49577439-49577458 None:intergenic 30.0%
TTGCCTAATCAAATGAGAAT+TGG + chr1_4:49577446-49577465 Msa0167640:CDS 30.0%
ATGCCAATTCTCATTTGATT+AGG - chr1_4:49577452-49577471 None:intergenic 30.0%
AAAATCAGTTACAGGTAAAC+GGG - chr1_4:49577834-49577853 None:intergenic 30.0%
CAAAATCAGTTACAGGTAAA+CGG - chr1_4:49577835-49577854 None:intergenic 30.0%
GGATTCGATTTATAATGGTT+TGG - chr1_4:49577904-49577923 None:intergenic 30.0%
CATTATAAATCGAATCCAGT+CGG + chr1_4:49577907-49577926 Msa0167640:CDS 30.0%
!!! ACTTTTAAGTTAACAGTGCA+AGG - chr1_4:49577974-49577993 None:intergenic 30.0%
GCACTGTTAACTTAAAAGTA+TGG + chr1_4:49577975-49577994 Msa0167640:CDS 30.0%
AACATAGACTGATTACTTGA+TGG + chr1_4:49578198-49578217 Msa0167640:intron 30.0%
TACTAGCAACAATTGTTGAA+AGG - chr1_4:49578538-49578557 None:intergenic 30.0%
TTGCATAATTTACATCAACC+AGG - chr1_4:49578718-49578737 None:intergenic 30.0%
!!! AATCCAAATTGGTTTTAGCA+GGG - chr1_4:49578900-49578919 None:intergenic 30.0%
!!! TAATCCAAATTGGTTTTAGC+AGG - chr1_4:49578901-49578920 None:intergenic 30.0%
GAGCTCAAAAATTGATTACT+AGG - chr1_4:49579086-49579105 None:intergenic 30.0%
TTTCTCGTGCTCATAAAAAA+AGG - chr1_4:49579245-49579264 None:intergenic 30.0%
!!! TTTTTTATGAGCACGAGAAA+TGG + chr1_4:49579245-49579264 Msa0167640:intron 30.0%
GTAATACAAACTAGGACAAA+AGG - chr1_4:49579805-49579824 None:intergenic 30.0%
CAAACAAAAGGTAAATCCAT+TGG + chr1_4:49579826-49579845 Msa0167640:intron 30.0%
GATAACAATTATAGTGCCAA+TGG - chr1_4:49579845-49579864 None:intergenic 30.0%
TGCAACTTCAAGACAAAAAT+AGG - chr1_4:49579892-49579911 None:intergenic 30.0%
! ATTTTTGTCTTGAAGTTGCA+TGG + chr1_4:49579892-49579911 Msa0167640:intron 30.0%
! TTTTTGTCTTGAAGTTGCAT+GGG + chr1_4:49579893-49579912 Msa0167640:intron 30.0%
ATCAATATATACAGTCTTGG+AGG + chr1_4:49580118-49580137 Msa0167640:CDS 30.0%
! TTCTTTTATTCGAGACATGA+GGG - chr1_4:49580226-49580245 None:intergenic 30.0%
! TTTCTTTTATTCGAGACATG+AGG - chr1_4:49580227-49580246 None:intergenic 30.0%
! CATTCTAAAAATGTCGTTCA+TGG - chr1_4:49580347-49580366 None:intergenic 30.0%
AAATACATGAATGAGATGAC+TGG - chr1_4:49580614-49580633 None:intergenic 30.0%
! GGTATATAGAGTATCAGATA+TGG + chr1_4:49580695-49580714 Msa0167640:intron 30.0%
AATAATTAACCAAGAGCAGA+AGG - chr1_4:49581088-49581107 None:intergenic 30.0%
CAAGAAAGGTTTCTATATCA+TGG + chr1_4:49581120-49581139 Msa0167640:three_prime_UTR 30.0%
TATATCATGTGTCCTGAAAA+TGG - chr1_4:49581146-49581165 None:intergenic 30.0%
CAAGTATGTTGTACATTATG+CGG + chr1_4:49581237-49581256 Msa0167640:three_prime_UTR 30.0%
AACAATAGAAAAGGGGAGAT+GGG - chr1_4:49576655-49576674 None:intergenic 35.0%
TAACAATAGAAAAGGGGAGA+TGG - chr1_4:49576656-49576675 None:intergenic 35.0%
AACAGCAATTATTTCCCCAT+TGG - chr1_4:49576780-49576799 None:intergenic 35.0%
! GAAATAATTGCTGTTGCATC+AGG + chr1_4:49576785-49576804 Msa0167640:five_prime_UTR 35.0%
TCACCAAAGGTTATAACACA+TGG - chr1_4:49576854-49576873 None:intergenic 35.0%
CTTGTCTTCAACACAAATAC+TGG - chr1_4:49576988-49577007 None:intergenic 35.0%
CAGTATTTGTGTTGAAGACA+AGG + chr1_4:49576986-49577005 Msa0167640:five_prime_UTR 35.0%
!! ACCATATCTTTTAACTGCTC+AGG + chr1_4:49577047-49577066 Msa0167640:five_prime_UTR 35.0%
ACCTGAGCAGTTAAAAGATA+TGG - chr1_4:49577051-49577070 None:intergenic 35.0%
! TCATTTAGAATATCCTCCAC+CGG + chr1_4:49577223-49577242 Msa0167640:CDS 35.0%
ACATTTGTGACAAAAACAGC+CGG - chr1_4:49577245-49577264 None:intergenic 35.0%
! ATACCTGCAGTTTTACAATC+AGG + chr1_4:49577785-49577804 Msa0167640:CDS 35.0%
AAACCTGATTGTAAAACTGC+AGG - chr1_4:49577791-49577810 None:intergenic 35.0%
!! CGTTTACCTGTAACTGATTT+TGG + chr1_4:49577833-49577852 Msa0167640:CDS 35.0%
AGATTGCCAAAATCAGTTAC+AGG - chr1_4:49577842-49577861 None:intergenic 35.0%
TCATGCGGCAAATTAATAGA+AGG - chr1_4:49577869-49577888 None:intergenic 35.0%
!! TCTATTAATTTGCCGCATGA+TGG + chr1_4:49577869-49577888 Msa0167640:CDS 35.0%
!! CTATTAATTTGCCGCATGAT+GGG + chr1_4:49577870-49577889 Msa0167640:CDS 35.0%
CGACTGGATTCGATTTATAA+TGG - chr1_4:49577909-49577928 None:intergenic 35.0%
GATAGGTTCATAACTTCAGA+AGG - chr1_4:49578078-49578097 None:intergenic 35.0%
ACACTATATCAATCACATGC+TGG - chr1_4:49578110-49578129 None:intergenic 35.0%
! AAATGTTTGGAGTGACTTTG+TGG + chr1_4:49578251-49578270 Msa0167640:intron 35.0%
AACTGTGTTTGCAGTGAAAT+GGG + chr1_4:49578309-49578328 Msa0167640:intron 35.0%
TCTACCACATGGTGAAAAAT+GGG - chr1_4:49578337-49578356 None:intergenic 35.0%
ATCTACCACATGGTGAAAAA+TGG - chr1_4:49578338-49578357 None:intergenic 35.0%
TGTACAAGAGTTTGTAATCC+TGG - chr1_4:49578408-49578427 None:intergenic 35.0%
ATTACAAACTCTTGTACACC+AGG + chr1_4:49578410-49578429 Msa0167640:CDS 35.0%
ATTACTTGATGTGCTGAGAT+TGG - chr1_4:49578468-49578487 None:intergenic 35.0%
ATCAAGTAATGTATGAGCTC+CGG + chr1_4:49578478-49578497 Msa0167640:CDS 35.0%
! TGAAAGCAGGTAGTTTTCAA+GGG - chr1_4:49578802-49578821 None:intergenic 35.0%
! ATGAAAGCAGGTAGTTTTCA+AGG - chr1_4:49578803-49578822 None:intergenic 35.0%
TGAGGACTAAAAATGAAAGC+AGG - chr1_4:49578815-49578834 None:intergenic 35.0%
! TTTTAGCAGGGACTAAAACT+GGG - chr1_4:49578888-49578907 None:intergenic 35.0%
! TGCGTGCAGGAAAATTTTAT+AGG + chr1_4:49579202-49579221 Msa0167640:intron 35.0%
! GCGTGCAGGAAAATTTTATA+GGG + chr1_4:49579203-49579222 Msa0167640:intron 35.0%
!!! ATGGAAGTTGGTGATTTTGT+AGG + chr1_4:49579264-49579283 Msa0167640:intron 35.0%
!!! TGGAAGTTGGTGATTTTGTA+GGG + chr1_4:49579265-49579284 Msa0167640:intron 35.0%
!! CTGAAAAGCATTGTCATTGA+TGG + chr1_4:49580083-49580102 Msa0167640:CDS 35.0%
TACAGTCTTGGAGGTAAAAA+TGG + chr1_4:49580127-49580146 Msa0167640:intron 35.0%
CAACAAGTAGGCACTATTTA+TGG + chr1_4:49580510-49580529 Msa0167640:intron 35.0%
TATCAGATATGGAACTTGTC+AGG + chr1_4:49580706-49580725 Msa0167640:CDS 35.0%
ATCAGATATGGAACTTGTCA+GGG + chr1_4:49580707-49580726 Msa0167640:CDS 35.0%
! TTGCATTCAAAAGCATACCT+TGG - chr1_4:49580808-49580827 None:intergenic 35.0%
TGCCATTCACATTACAAGTA+CGG - chr1_4:49580918-49580937 None:intergenic 35.0%
AAAAATTCACTTCCATCCAC+AGG - chr1_4:49581057-49581076 None:intergenic 35.0%
TTGAACAGTCAAAGCAAGAA+AGG + chr1_4:49581106-49581125 Msa0167640:three_prime_UTR 35.0%
!! TCTATATCATGGCCATTTTC+AGG + chr1_4:49581131-49581150 Msa0167640:three_prime_UTR 35.0%
! AACGACAGATACTTGCTAGT+GGG + chr1_4:49576550-49576569 Msa0167640:five_prime_UTR 40.0%
TGGACCAAGAAGTTCGTTTA+TGG + chr1_4:49576577-49576596 Msa0167640:five_prime_UTR 40.0%
GGACCAAGAAGTTCGTTTAT+GGG + chr1_4:49576578-49576597 Msa0167640:five_prime_UTR 40.0%
CATCCCATAAACGAACTTCT+TGG - chr1_4:49576584-49576603 None:intergenic 40.0%
CAATTATTTCCCCATTGGCA+TGG - chr1_4:49576775-49576794 None:intergenic 40.0%
TATAACACATGGCAGGTTCT+CGG - chr1_4:49576843-49576862 None:intergenic 40.0%
CAAAGGTTATAACACATGGC+AGG - chr1_4:49576850-49576869 None:intergenic 40.0%
CTGCCATGTGTTATAACCTT+TGG + chr1_4:49576848-49576867 Msa0167640:intron 40.0%
AAGGTAGAACATGTCACCAA+AGG - chr1_4:49576867-49576886 None:intergenic 40.0%
TGTGGCACTACAAAAATGCA+AGG + chr1_4:49576950-49576969 Msa0167640:five_prime_UTR 40.0%
GTGGCACTACAAAAATGCAA+GGG + chr1_4:49576951-49576970 Msa0167640:five_prime_UTR 40.0%
CCTGCACATCAATCCAAATA+TGG - chr1_4:49577151-49577170 None:intergenic 40.0%
CCATATTTGGATTGATGTGC+AGG + chr1_4:49577148-49577167 Msa0167640:intron 40.0%
TTCAGATTGCTCAATGACAG+AGG + chr1_4:49577187-49577206 Msa0167640:exon 40.0%
TTGTCACAAATGTTCATCCC+AGG + chr1_4:49577252-49577271 Msa0167640:CDS 40.0%
AATTCTACTCTTGACACTGG+TGG - chr1_4:49577302-49577321 None:intergenic 40.0%
TGCAATTCTACTCTTGACAC+TGG - chr1_4:49577305-49577324 None:intergenic 40.0%
CAGCATGCTAGTAATGATGT+TGG + chr1_4:49577323-49577342 Msa0167640:CDS 40.0%
! AGCATGCAGGTTGAACAATA+CGG + chr1_4:49577353-49577372 Msa0167640:CDS 40.0%
CAAACCGGAGCAGAATATAA+TGG + chr1_4:49577413-49577432 Msa0167640:CDS 40.0%
ATGGCCATTATATTCTGCTC+CGG - chr1_4:49577420-49577439 None:intergenic 40.0%
TGGCATCAATAACCTCACAA+TGG + chr1_4:49577466-49577485 Msa0167640:CDS 40.0%
GGCATCAATAACCTCACAAT+GGG + chr1_4:49577467-49577486 Msa0167640:CDS 40.0%
ATCAATAACCTCACAATGGG+TGG + chr1_4:49577470-49577489 Msa0167640:CDS 40.0%
!!! GTTTTCATGTTGGCTTGCTT+CGG - chr1_4:49577522-49577541 None:intergenic 40.0%
! CATGATCAGCGTTTTCATGT+TGG - chr1_4:49577532-49577551 None:intergenic 40.0%
CATCCATTAGAATCTGGTGA+CGG - chr1_4:49577605-49577624 None:intergenic 40.0%
! GTCACCAGATTCTAATGGAT+GGG + chr1_4:49577604-49577623 Msa0167640:CDS 40.0%
ACTAACCATCCTTGCAGAAA+AGG - chr1_4:49577635-49577654 None:intergenic 40.0%
TTTCTGCAAGGATGGTTAGT+CGG + chr1_4:49577635-49577654 Msa0167640:CDS 40.0%
!! ATCTGTTGAGGAAGCATTGA+GGG - chr1_4:49577680-49577699 None:intergenic 40.0%
!! AATCTGTTGAGGAAGCATTG+AGG - chr1_4:49577681-49577700 None:intergenic 40.0%
TCAATGCTTCCTCAACAGAT+TGG + chr1_4:49577680-49577699 Msa0167640:CDS 40.0%
GTGAAAGAACCAATCTGTTG+AGG - chr1_4:49577692-49577711 None:intergenic 40.0%
!! TTGGTGGTGAACAGATTAGA+TGG - chr1_4:49577719-49577738 None:intergenic 40.0%
TTAGACGGCATCTTTGTAGT+GGG - chr1_4:49578027-49578046 None:intergenic 40.0%
CGACATGTGGTATAGTTAGA+CGG - chr1_4:49578042-49578061 None:intergenic 40.0%
CAACTGTGTTTGCAGTGAAA+TGG + chr1_4:49578308-49578327 Msa0167640:intron 40.0%
!! GTTTTAGCAGGGACTAAAAC+TGG - chr1_4:49578889-49578908 None:intergenic 40.0%
AGTCCCTGCTAAAACCAATT+TGG + chr1_4:49578894-49578913 Msa0167640:intron 40.0%
CTCGTGCTCATAAAAAAAGG+TGG - chr1_4:49579242-49579261 None:intergenic 40.0%
AGCAGAATATGCTCAGATGT+AGG - chr1_4:49580035-49580054 None:intergenic 40.0%
! TGTTTAGTTGTTGTGTTGGC+TGG + chr1_4:49580541-49580560 Msa0167640:intron 40.0%
! CATGCTTTCATCCTTTTCCT+GGG + chr1_4:49580763-49580782 Msa0167640:CDS 40.0%
! ATGCTTTCATCCTTTTCCTG+GGG + chr1_4:49580764-49580783 Msa0167640:CDS 40.0%
GTTGTAGGAAGGAAAGCTTA+GGG + chr1_4:49580879-49580898 Msa0167640:intron 40.0%
CATTACAAGTACGGTCAAAC+TGG - chr1_4:49580909-49580928 None:intergenic 40.0%
GACCGTACTTGTAATGTGAA+TGG + chr1_4:49580913-49580932 Msa0167640:CDS 40.0%
ACTTGTAATGTGAATGGCAC+TGG + chr1_4:49580919-49580938 Msa0167640:CDS 40.0%
TTGGAGTCAATCAATGAGCA+AGG + chr1_4:49580971-49580990 Msa0167640:exon 40.0%
TAACCAAGAGCAGAAGGAAA+GGG - chr1_4:49581082-49581101 None:intergenic 40.0%
TTAACCAAGAGCAGAAGGAA+AGG - chr1_4:49581083-49581102 None:intergenic 40.0%
GTATCTGTCGTTGCAATGGA+TGG - chr1_4:49576542-49576561 None:intergenic 45.0%
GCAAGTATCTGTCGTTGCAA+TGG - chr1_4:49576546-49576565 None:intergenic 45.0%
! CAACGACAGATACTTGCTAG+TGG + chr1_4:49576549-49576568 Msa0167640:five_prime_UTR 45.0%
GGAAAGCGAGAGATGCAATA+GGG - chr1_4:49576754-49576773 None:intergenic 45.0%
TGGAAAGCGAGAGATGCAAT+AGG - chr1_4:49576755-49576774 None:intergenic 45.0%
TACTGTGTCAGTTGTACGTG+TGG + chr1_4:49576932-49576951 Msa0167640:intron 45.0%
AAAAGATATGGTGCCCCATG+CGG - chr1_4:49577039-49577058 None:intergenic 45.0%
ATGACAGAGGCAACATCTCA+TGG + chr1_4:49577200-49577219 Msa0167640:CDS 45.0%
TTTGTGACAAAAACAGCCGG+TGG - chr1_4:49577242-49577261 None:intergenic 45.0%
!! TGTTGGTTTGAGTAGCATGC+AGG + chr1_4:49577340-49577359 Msa0167640:CDS 45.0%
! TTGAGAGCTAGTGGGTATCT+CGG - chr1_4:49577396-49577415 None:intergenic 45.0%
! ATACCCACTAGCTCTCAAAC+CGG + chr1_4:49577398-49577417 Msa0167640:CDS 45.0%
ATAACCTCACAATGGGTGGT+AGG + chr1_4:49577474-49577493 Msa0167640:CDS 45.0%
TAACCTCACAATGGGTGGTA+GGG + chr1_4:49577475-49577494 Msa0167640:CDS 45.0%
GTTCCGTCACCAGATTCTAA+TGG + chr1_4:49577599-49577618 Msa0167640:CDS 45.0%
CGTCACCAGATTCTAATGGA+TGG + chr1_4:49577603-49577622 Msa0167640:CDS 45.0%
AGCTCCCATCCATTAGAATC+TGG - chr1_4:49577611-49577630 None:intergenic 45.0%
TTAGTCGGTCAAAGCCAAGT+TGG + chr1_4:49577650-49577669 Msa0167640:CDS 45.0%
TCAGTTACAGGTAAACGGGA+TGG - chr1_4:49577830-49577849 None:intergenic 45.0%
TGGCTATCAAACCCATCATG+CGG - chr1_4:49577884-49577903 None:intergenic 45.0%
TAATTCTGTAGCAGCTGCAG+TGG - chr1_4:49577951-49577970 None:intergenic 45.0%
TAGACGGCATCTTTGTAGTG+GGG - chr1_4:49578026-49578045 None:intergenic 45.0%
GTTAGACGGCATCTTTGTAG+TGG - chr1_4:49578028-49578047 None:intergenic 45.0%
CATGCTGGAGCAGATATGAT+AGG - chr1_4:49578095-49578114 None:intergenic 45.0%
GCGGCTAAAAATCTACCACA+TGG - chr1_4:49578348-49578367 None:intergenic 45.0%
TGCATGTATGCACCCTCATA+TGG + chr1_4:49578374-49578393 Msa0167640:CDS 45.0%
CTGGATCAGCTTCCATATGA+GGG - chr1_4:49578389-49578408 None:intergenic 45.0%
CTTCCTCCAGGGAATATATC+CGG - chr1_4:49578500-49578519 None:intergenic 45.0%
! TGGACTAGAGTACATCTGAG+AGG - chr1_4:49578571-49578590 None:intergenic 45.0%
! AGGCAATGAGCAGCTCTAAT+TGG - chr1_4:49578661-49578680 None:intergenic 45.0%
TCATTGCCTGACTTCAATCC+AGG + chr1_4:49578672-49578691 Msa0167640:CDS 45.0%
AACTGACCTGGATTGAAGTC+AGG - chr1_4:49578681-49578700 None:intergenic 45.0%
!! AGCAGGTAGTTTTCAAGGGA+CGG - chr1_4:49578798-49578817 None:intergenic 45.0%
! TAGGGAATAAAAGTGCGTGC+AGG + chr1_4:49579189-49579208 Msa0167640:intron 45.0%
TGAGCACGAGAAATGGAAGT+TGG + chr1_4:49579252-49579271 Msa0167640:intron 45.0%
! GCATGCTTTCATCCTTTTCC+TGG + chr1_4:49580762-49580781 Msa0167640:CDS 45.0%
! TGCTTTCATCCTTTTCCTGG+GGG + chr1_4:49580765-49580784 Msa0167640:CDS 45.0%
! GATTGATAACCCTTTGCTCG+TGG + chr1_4:49580854-49580873 Msa0167640:intron 45.0%
GGTTGTAGGAAGGAAAGCTT+AGG + chr1_4:49580878-49580897 Msa0167640:intron 45.0%
! AATGTGAATGGCACTGGATC+TGG + chr1_4:49580925-49580944 Msa0167640:CDS 45.0%
TTCCCTGAGGAGAACATGAT+TGG + chr1_4:49580952-49580971 Msa0167640:CDS 45.0%
CTCCAATCATGTTCTCCTCA+GGG - chr1_4:49580957-49580976 None:intergenic 45.0%
ACTCCAATCATGTTCTCCTC+AGG - chr1_4:49580958-49580977 None:intergenic 45.0%
!! ATAAAAAAATAAAAAAACAA+AGG - chr1_4:49576886-49576905 None:intergenic 5.0%
!! AAAATAATTCAAAAATTTAA+AGG - chr1_4:49578936-49578955 None:intergenic 5.0%
! GATACTTGCTAGTGGGAGCT+TGG + chr1_4:49576557-49576576 Msa0167640:five_prime_UTR 50.0%
TCTCTCGCTTTCCATGCCAA+TGG + chr1_4:49576761-49576780 Msa0167640:five_prime_UTR 50.0%
CTCTCGCTTTCCATGCCAAT+GGG + chr1_4:49576762-49576781 Msa0167640:five_prime_UTR 50.0%
TCTCGCTTTCCATGCCAATG+GGG + chr1_4:49576763-49576782 Msa0167640:five_prime_UTR 50.0%
TGCTGTTGCATCAGGACACA+AGG + chr1_4:49576793-49576812 Msa0167640:five_prime_UTR 50.0%
! CTGTGCATTTTCACCCGCAT+GGG + chr1_4:49577022-49577041 Msa0167640:five_prime_UTR 50.0%
! TGTGCATTTTCACCCGCATG+GGG + chr1_4:49577023-49577042 Msa0167640:five_prime_UTR 50.0%
AAAGATATGGTGCCCCATGC+GGG - chr1_4:49577038-49577057 None:intergenic 50.0%
CTCAGGTGAGTGAACTGACT+TGG + chr1_4:49577064-49577083 Msa0167640:intron 50.0%
GACATGTTGATCTGCGTCCT+GGG - chr1_4:49577272-49577291 None:intergenic 50.0%
TGACATGTTGATCTGCGTCC+TGG - chr1_4:49577273-49577292 None:intergenic 50.0%
!! TCTGGTGACGGAACAATCTG+AGG - chr1_4:49577593-49577612 None:intergenic 50.0%
! AGCTGCCTTTTCTGCAAGGA+TGG + chr1_4:49577627-49577646 Msa0167640:CDS 50.0%
GCATTGAGGGAACACCAACT+TGG - chr1_4:49577667-49577686 None:intergenic 50.0%
CACAGCTAGCTCAACATTGG+TGG - chr1_4:49577735-49577754 None:intergenic 50.0%
TGGCACAGCTAGCTCAACAT+TGG - chr1_4:49577738-49577757 None:intergenic 50.0%
ATGCCATTGGGCATTCCTGA+AGG - chr1_4:49577761-49577780 None:intergenic 50.0%
GCAGGTATGCTGATGCCATT+GGG - chr1_4:49577773-49577792 None:intergenic 50.0%
TGCAGGTATGCTGATGCCAT+TGG - chr1_4:49577774-49577793 None:intergenic 50.0%
!! CTGATTTGGCAAGTTCCGAC+TGG - chr1_4:49577925-49577944 None:intergenic 50.0%
GTCGGAACTTGCCAAATCAG+TGG + chr1_4:49577925-49577944 Msa0167640:CDS 50.0%
!! ACTTCAGAAGGTACCTGCAG+AGG - chr1_4:49578066-49578085 None:intergenic 50.0%
!! GGTGCCCATTTTTCACCATG+TGG + chr1_4:49578330-49578349 Msa0167640:CDS 50.0%
GTGCATACATGCAACACAGG+CGG - chr1_4:49578367-49578386 None:intergenic 50.0%
AGGGTGCATACATGCAACAC+AGG - chr1_4:49578370-49578389 None:intergenic 50.0%
CCTGGATCAGCTTCCATATG+AGG - chr1_4:49578390-49578409 None:intergenic 50.0%
CCTCATATGGAAGCTGATCC+AGG + chr1_4:49578387-49578406 Msa0167640:CDS 50.0%
!! GTTGGTGATGTTGGAAGTCC+AGG - chr1_4:49578438-49578457 None:intergenic 50.0%
!! GGATGTCGAGTTGGTGATGT+TGG - chr1_4:49578447-49578466 None:intergenic 50.0%
GCTGAGATTGGATGTCGAGT+TGG - chr1_4:49578456-49578475 None:intergenic 50.0%
TGAGCTCCGGATATATTCCC+TGG + chr1_4:49578491-49578510 Msa0167640:CDS 50.0%
GGGCGCAGGAAAATACTGTA+AGG - chr1_4:49578868-49578887 None:intergenic 50.0%
GAGCATATTCTGCTCGCCTA+TGG + chr1_4:49580041-49580060 Msa0167640:CDS 50.0%
AGAGCTATGACGTCGACCAT+AGG - chr1_4:49580060-49580079 None:intergenic 50.0%
! GCTTTCTAGTGCAGAGGATG+AGG + chr1_4:49580731-49580750 Msa0167640:CDS 50.0%
TGCAGAGGATGAGGTCAATG+TGG + chr1_4:49580740-49580759 Msa0167640:CDS 50.0%
! TTTCATCCTTTTCCTGGGGG+AGG + chr1_4:49580768-49580787 Msa0167640:CDS 50.0%
! TTCATCCTTTTCCTGGGGGA+GGG + chr1_4:49580769-49580788 Msa0167640:CDS 50.0%
AGGGCTTGTCTATGGAACCA+AGG + chr1_4:49580788-49580807 Msa0167640:CDS 50.0%
TGATAACCCTTTGCTCGTGG+TGG + chr1_4:49580857-49580876 Msa0167640:intron 50.0%
CTACAACCACCACGAGCAAA+GGG - chr1_4:49580866-49580885 None:intergenic 50.0%
TGGATCTGGTTACTTCCCTG+AGG + chr1_4:49580939-49580958 Msa0167640:CDS 50.0%
TCACCCTTTCCTTCTGCTCT+TGG + chr1_4:49581076-49581095 Msa0167640:three_prime_UTR 50.0%
GGGATGCTAGCTCATCAGAG+TGG + chr1_4:49576598-49576617 Msa0167640:five_prime_UTR 55.0%
! TGAAGACAAGGCGCTCGCTA+CGG + chr1_4:49576998-49577017 Msa0167640:five_prime_UTR 55.0%
! GCTGTGCATTTTCACCCGCA+TGG + chr1_4:49577021-49577040 Msa0167640:five_prime_UTR 55.0%
GTGACAAAAACAGCCGGTGG+AGG - chr1_4:49577239-49577258 None:intergenic 55.0%
! GCTCCGGTTTGAGAGCTAGT+GGG - chr1_4:49577404-49577423 None:intergenic 55.0%
! TGCTCCGGTTTGAGAGCTAG+TGG - chr1_4:49577405-49577424 None:intergenic 55.0%
!! TCATGTTGGCTTGCTTCGGC+TGG - chr1_4:49577518-49577537 None:intergenic 55.0%
CGCGTTGAACTCTCTGAGCT+TGG + chr1_4:49577560-49577579 Msa0167640:CDS 55.0%
! TGGGAGCTGCCTTTTCTGCA+AGG + chr1_4:49577623-49577642 Msa0167640:CDS 55.0%
CCATTGGGCATTCCTGAAGG+TGG - chr1_4:49577758-49577777 None:intergenic 55.0%
CCACCTTCAGGAATGCCCAA+TGG + chr1_4:49577755-49577774 Msa0167640:CDS 55.0%
! AGCTGCAGTGGCCACTGATT+TGG - chr1_4:49577939-49577958 None:intergenic 55.0%
! CATCTTTGTAGTGGGGCGCA+GGG - chr1_4:49578019-49578038 None:intergenic 55.0%
TACCACATGTCGTCCTCTGC+AGG + chr1_4:49578050-49578069 Msa0167640:CDS 55.0%
TACCTGCAGAGGACGACATG+TGG - chr1_4:49578055-49578074 None:intergenic 55.0%
ACTCTTGTACACCAGGAGCC+TGG + chr1_4:49578417-49578436 Msa0167640:CDS 55.0%
ATGTTGGAAGTCCAGGCTCC+TGG - chr1_4:49578431-49578450 None:intergenic 55.0%
GCTCCGGATATATTCCCTGG+AGG + chr1_4:49578494-49578513 Msa0167640:CDS 55.0%
GTCGTACGTTGCTTCCTCCA+GGG - chr1_4:49578511-49578530 None:intergenic 55.0%
AGTCGTACGTTGCTTCCTCC+AGG - chr1_4:49578512-49578531 None:intergenic 55.0%
GGAGGGAGGGACAGAGATAT+GGG - chr1_4:49579694-49579713 None:intergenic 55.0%
AGGAGGGAGGGACAGAGATA+TGG - chr1_4:49579695-49579714 None:intergenic 55.0%
GTGTATGTGTGTGCGCAGGA+GGG - chr1_4:49579711-49579730 None:intergenic 55.0%
TGTGTATGTGTGTGCGCAGG+AGG - chr1_4:49579712-49579731 None:intergenic 55.0%
GTGTGTGTATGTGTGTGCGC+AGG - chr1_4:49579715-49579734 None:intergenic 55.0%
! CAGGGTGCTTTCTAGTGCAG+AGG + chr1_4:49580725-49580744 Msa0167640:CDS 55.0%
CCTACAACCACCACGAGCAA+AGG - chr1_4:49580867-49580886 None:intergenic 55.0%
CCTTTGCTCGTGGTGGTTGT+AGG + chr1_4:49580864-49580883 Msa0167640:intron 55.0%
TGCTCGTGGTGGTTGTAGGA+AGG + chr1_4:49580868-49580887 Msa0167640:intron 55.0%
! GAAGACAAGGCGCTCGCTAC+GGG + chr1_4:49576999-49577018 Msa0167640:five_prime_UTR 60.0%
CCTCCCTACCACCCATTGTG+AGG - chr1_4:49577481-49577500 None:intergenic 60.0%
CCTCACAATGGGTGGTAGGG+AGG + chr1_4:49577478-49577497 Msa0167640:CDS 60.0%
GAGCTAGCTGTGCCACCTTC+AGG + chr1_4:49577743-49577762 Msa0167640:CDS 60.0%
! GCATCTTTGTAGTGGGGCGC+AGG - chr1_4:49578020-49578039 None:intergenic 60.0%
CAGGGACTAAAACTGGGCGC+AGG - chr1_4:49578882-49578901 None:intergenic 60.0%
ATGTGTGTGCGCAGGAGGGA+GGG - chr1_4:49579707-49579726 None:intergenic 60.0%
TATGTGTGTGCGCAGGAGGG+AGG - chr1_4:49579708-49579727 None:intergenic 60.0%
ACAAGCCCTCCCCCAGGAAA+AGG - chr1_4:49580777-49580796 None:intergenic 60.0%
CCATAGACAAGCCCTCCCCC+AGG - chr1_4:49580783-49580802 None:intergenic 65.0%
CCTGGGGGAGGGCTTGTCTA+TGG + chr1_4:49580780-49580799 Msa0167640:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 49576530 49581279 49576530 ID=Msa0167640;Name=Msa0167640
chr1_4 mRNA 49576530 49581279 49576530 ID=Msa0167640-mRNA-1;Parent=Msa0167640;Name=Msa0167640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=334|0.87|0.88|1|1|1|9|292|487
chr1_4 exon 49576530 49576639 49576530 ID=Msa0167640-mRNA-1:exon:14574;Parent=Msa0167640-mRNA-1
chr1_4 exon 49576747 49576814 49576747 ID=Msa0167640-mRNA-1:exon:14575;Parent=Msa0167640-mRNA-1
chr1_4 exon 49576943 49577068 49576943 ID=Msa0167640-mRNA-1:exon:14576;Parent=Msa0167640-mRNA-1
chr1_4 exon 49577170 49578071 49577170 ID=Msa0167640-mRNA-1:exon:14577;Parent=Msa0167640-mRNA-1
chr1_4 exon 49578323 49578523 49578323 ID=Msa0167640-mRNA-1:exon:14578;Parent=Msa0167640-mRNA-1
chr1_4 exon 49578633 49578693 49578633 ID=Msa0167640-mRNA-1:exon:14579;Parent=Msa0167640-mRNA-1
chr1_4 exon 49580026 49580139 49580026 ID=Msa0167640-mRNA-1:exon:14580;Parent=Msa0167640-mRNA-1
chr1_4 exon 49580696 49580809 49580696 ID=Msa0167640-mRNA-1:exon:14581;Parent=Msa0167640-mRNA-1
chr1_4 exon 49580886 49581279 49580886 ID=Msa0167640-mRNA-1:exon:14582;Parent=Msa0167640-mRNA-1
chr1_4 five_prime_UTR 49576530 49576639 49576530 ID=Msa0167640-mRNA-1:five_prime_utr;Parent=Msa0167640-mRNA-1
chr1_4 five_prime_UTR 49576747 49576814 49576747 ID=Msa0167640-mRNA-1:five_prime_utr;Parent=Msa0167640-mRNA-1
chr1_4 five_prime_UTR 49576943 49577068 49576943 ID=Msa0167640-mRNA-1:five_prime_utr;Parent=Msa0167640-mRNA-1
chr1_4 five_prime_UTR 49577170 49577199 49577170 ID=Msa0167640-mRNA-1:five_prime_utr;Parent=Msa0167640-mRNA-1
chr1_4 CDS 49577200 49578071 49577200 ID=Msa0167640-mRNA-1:cds;Parent=Msa0167640-mRNA-1
chr1_4 CDS 49578323 49578523 49578323 ID=Msa0167640-mRNA-1:cds;Parent=Msa0167640-mRNA-1
chr1_4 CDS 49578633 49578693 49578633 ID=Msa0167640-mRNA-1:cds;Parent=Msa0167640-mRNA-1
chr1_4 CDS 49580026 49580139 49580026 ID=Msa0167640-mRNA-1:cds;Parent=Msa0167640-mRNA-1
chr1_4 CDS 49580696 49580809 49580696 ID=Msa0167640-mRNA-1:cds;Parent=Msa0167640-mRNA-1
chr1_4 CDS 49580886 49580987 49580886 ID=Msa0167640-mRNA-1:cds;Parent=Msa0167640-mRNA-1
chr1_4 three_prime_UTR 49580988 49581279 49580988 ID=Msa0167640-mRNA-1:three_prime_utr;Parent=Msa0167640-mRNA-1
Gene Sequence

>Msa0167640

ATGACAGAGGCAACATCTCATGGTCATTTAGAATATCCTCCACCGGCTGTTTTTGTCACAAATGTTCATCCCAGGACGCAGATCAACATGTCAAGTGAACCACCAGTGTCAAGAGTAGAATTGCAGCATGCTAGTAATGATGTTGGTTTGAGTAGCATGCAGGTTGAACAATACGGTATTCGATTGTCAAACTCCGAGATACCCACTAGCTCTCAAACCGGAGCAGAATATAATGGCCATACTACTTTGCCTAATCAAATGAGAATTGGCATCAATAACCTCACAATGGGTGGTAGGGAGGCTTATGAAACAGAACCAGCCGAAGCAAGCCAACATGAAAACGCTGATCATGTTGTAAAACGCGTTGAACTCTCTGAGCTTGGTCAATTTCCTCAGATTGTTCCGTCACCAGATTCTAATGGATGGGAGCTGCCTTTTCTGCAAGGATGGTTAGTCGGTCAAAGCCAAGTTGGTGTTCCCTCAATGCTTCCTCAACAGATTGGTTCTTTCACTATGCCATCTAATCTGTTCACCACCAATGTTGAGCTAGCTGTGCCACCTTCAGGAATGCCCAATGGCATCAGCATACCTGCAGTTTTACAATCAGGTTTACAGAATCAATTTTCACCATCCCGTTTACCTGTAACTGATTTTGGCAATCTCGTTCCTTCTATTAATTTGCCGCATGATGGGTTTGATAGCCAAACCATTATAAATCGAATCCAGTCGGAACTTGCCAAATCAGTGGCCACTGCAGCTGCTACAGAATTACCTTGCACTGTTAACTTAAAAGTATGGTCATATGACTTAAAAAATCCCTGCGCCCCACTACAAAGATGCCGTCTAACTATACCACATGTCGTCCTCTGCAGTGAAATGGGTGCCCATTTTTCACCATGTGGTAGATTTTTAGCCGCCTGTGTTGCATGTATGCACCCTCATATGGAAGCTGATCCAGGATTACAAACTCTTGTACACCAGGAGCCTGGACTTCCAACATCACCAACTCGACATCCAATCTCAGCACATCAAGTAATGTATGAGCTCCGGATATATTCCCTGGAGGAAGCAACATTTGGATCGGTGCTTGTATCACGACCAATTAGAGCTGCTCATTGCCTGACTTCAATCCAGTTCTCGCCTACATCTGAGCATATTCTGCTCGCCTATGGTCGACGTCATAGCTCTCTTCTGAAAAGCATTGTCATTGATGGAGAAAAAACATCATCAATATATACAGTCTTGGAGGTATATAGAGTATCAGATATGGAACTTGTCAGGGTGCTTTCTAGTGCAGAGGATGAGGTCAATGTGGCATGCTTTCATCCTTTTCCTGGGGGAGGGCTTGTCTATGGAACCAAGGAAGGAAAGCTTAGGGTCTTCCAGTTTGACCGTACTTGTAATGTGAATGGCACTGGATCTGGTTACTTCCCTGAGGAGAACATGATTGGAGTCAATCAATGA
Protein sequence

>Msa0167640

MTEATSHGHLEYPPPAVFVTNVHPRTQINMSSEPPVSRVELQHASNDVGLSSMQVEQYGIRLSNSEIPTSSQTGAEYNGHTTLPNQMRIGINNLTMGGREAYETEPAEASQHENADHVVKRVELSELGQFPQIVPSPDSNGWELPFLQGWLVGQSQVGVPSMLPQQIGSFTMPSNLFTTNVELAVPPSGMPNGISIPAVLQSGLQNQFSPSRLPVTDFGNLVPSINLPHDGFDSQTIINRIQSELAKSVATAAATELPCTVNLKVWSYDLKNPCAPLQRCRLTIPHVVLCSEMGAHFSPCGRFLAACVACMHPHMEADPGLQTLVHQEPGLPTSPTRHPISAHQVMYELRIYSLEEATFGSVLVSRPIRAAHCLTSIQFSPTSEHILLAYGRRHSSLLKSIVIDGEKTSSIYTVLEVYRVSDMELVRVLSSAEDEVNVACFHPFPGGGLVYGTKEGKLRVFQFDRTCNVNGTGSGYFPEENMIGVNQ*