AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1045200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045200 MtrunA17_Chr7g0225161 97.574 907 21 1 1 907 1 906 0.0 1792
Msa1045200 MtrunA17_Chr4g0061371 88.565 892 102 0 1 892 1 892 0.0 1616
Msa1045200 MtrunA17_Chr7g0218421 49.249 865 413 9 4 853 86 939 0.0 842
Msa1045200 MtrunA17_Chr6g0454071 49.481 867 408 9 4 853 82 935 0.0 838
Msa1045200 MtrunA17_Chr3g0137071 49.112 845 401 10 33 859 123 956 0.0 799
Msa1045200 MtrunA17_Chr8g0385811 46.676 722 314 9 149 858 244 906 0.0 638
Msa1045200 MtrunA17_Chr2g0329561 67.715 477 144 3 400 875 4 471 0.0 634
Msa1045200 MtrunA17_Chr3g0131711 47.149 719 309 10 152 858 243 902 0.0 628
Msa1045200 MtrunA17_Chr3g0134631 46.399 722 316 9 149 858 245 907 0.0 628
Msa1045200 MtrunA17_Chr3g0131351 41.984 736 345 13 145 861 279 951 5.08e-180 545
Msa1045200 MtrunA17_Chr2g0277781 72.054 297 77 2 543 838 2 293 1.38e-145 432
Msa1045200 MtrunA17_Chr3g0102771 32.832 798 464 25 91 852 11 772 7.29e-103 339
Msa1045200 MtrunA17_Chr2g0277771 76.437 174 36 1 720 893 1 169 2.14e-84 268
Msa1045200 MtrunA17_Chr3g0135231 43.094 362 170 6 183 536 261 594 1.18e-76 263
Msa1045200 MtrunA17_Chr3g0135231 43.750 96 54 0 677 772 546 641 1.69e-15 80.9
Msa1045200 MtrunA17_Chr7g0260941 64.881 168 14 2 720 887 1 123 7.56e-59 196
Msa1045200 MtrunA17_Chr7g0260931 86.316 95 13 0 530 624 1 95 1.74e-48 166
Msa1045200 MtrunA17_Chr1g0188061 62.791 86 32 0 631 716 232 317 9.23e-30 121
Msa1045200 MtrunA17_Chr2g0277791 66.216 74 21 1 461 534 1 70 2.65e-21 88.6
Msa1045200 MtrunA17_Chr1g0177421 26.117 291 182 9 17 279 23 308 2.25e-16 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045200 AT1G74310.1 80.851 893 165 3 1 893 1 887 0.0 1488
Msa1045200 AT1G74310.2 81.985 816 144 1 1 816 1 813 0.0 1383
Msa1045200 AT4G14670.1 65.303 660 187 5 1 658 1 620 0.0 835
Msa1045200 AT5G15450.1 48.724 862 421 9 4 853 80 932 0.0 829
Msa1045200 AT2G25140.1 48.023 885 435 10 1 869 83 958 0.0 808
Msa1045200 AT5G50920.1 46.592 719 313 11 152 858 245 904 0.0 630
Msa1045200 AT3G48870.2 45.570 711 316 7 160 858 243 894 0.0 617
Msa1045200 AT3G48870.1 45.570 711 316 7 160 858 274 925 0.0 616
Msa1045200 AT3G48870.4 45.570 711 316 7 160 858 274 925 0.0 616
Msa1045200 AT3G48870.3 45.570 711 316 7 160 858 274 925 0.0 616
Msa1045200 AT5G51070.1 51.282 312 141 1 535 835 590 901 2.36e-98 330
Msa1045200 AT5G51070.1 51.004 249 114 4 164 405 271 518 4.26e-69 248
Msa1045200 AT4G14675.1 50.000 148 42 1 720 867 1 116 6.20e-43 154
Msa1045200 AT3G45450.1 45.763 177 76 4 176 350 151 309 6.21e-39 148
Msa1045200 AT3G52490.1 27.599 279 166 9 17 277 23 283 7.05e-16 82.8

Find 204 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAATTGATCGATTGATTT+TGG 0.076721 7_2:+4427310 Msa1045200:CDS
CCAACCTTTCTTTATCATTT+TGG 0.125585 7_2:-4429222 None:intergenic
TTGATAATGGAAGAGCTTTC+TGG 0.214612 7_2:-4427236 None:intergenic
CATCTCATAAGTGGACTTTC+AGG 0.227432 7_2:+4430043 Msa1045200:CDS
CTTAAAGCAAAGAATTATTT+TGG 0.230548 7_2:-4430881 None:intergenic
ATGGAAGAATAAGCTTTATT+AGG 0.230747 7_2:+4430654 Msa1045200:exon
AAGTTCATTCTCATCAATTT+TGG 0.242631 7_2:+4430981 Msa1045200:three_prime_UTR
TTACTAACAAAAGATGCTTT+AGG 0.265842 7_2:+4430799 Msa1045200:three_prime_UTR
GGGAAACTTGATCCTGTTAT+TGG 0.273106 7_2:+4427512 Msa1045200:CDS
AATCTGGTGTGGCTGCTTCT+AGG 0.276407 7_2:+4427372 Msa1045200:CDS
TCCAGCCTATTCAACAATTC+TGG 0.282474 7_2:-4430127 None:intergenic
TTCTCAAGCCACCTTCTAAT+TGG 0.289169 7_2:-4430402 None:intergenic
GTTGCATTCTCTTCCTTTCA+AGG 0.293230 7_2:-4428563 None:intergenic
ACTAAATCAATTGCCTTATC+AGG 0.295202 7_2:-4428480 None:intergenic
TAGGTTATTTGCTTTGGATA+TGG 0.298718 7_2:+4427694 Msa1045200:CDS
TTTGAAGCATTGAAAACTTA+TGG 0.300040 7_2:+4427467 Msa1045200:CDS
AAGAACAATCCTGTTATTAT+AGG 0.300913 7_2:+4427584 Msa1045200:CDS
TGCTTCTAGGGTTAAATTAG+AGG 0.305282 7_2:+4427385 Msa1045200:CDS
TACTAACAAAAGATGCTTTA+GGG 0.316449 7_2:+4430800 Msa1045200:three_prime_UTR
GATGAAATTCATCTTGTTCT+CGG 0.335841 7_2:+4427821 Msa1045200:CDS
AGGTTATTTGCTTTGGATAT+GGG 0.347039 7_2:+4427695 Msa1045200:CDS
AGTCGCTGGTACTCAGTATA+GGG 0.347042 7_2:+4427724 Msa1045200:CDS
GCTATCTATGATGCTTATAA+AGG 0.353907 7_2:+4430440 Msa1045200:CDS
TTTATTGTTGTGTAGGTGTA+TGG 0.363041 7_2:+4430372 Msa1045200:intron
GCTAATAAAAGAGATACTTA+TGG 0.363368 7_2:-4430720 None:intergenic
TGATGTTAGGTTATTTGCTT+TGG 0.368946 7_2:+4427688 Msa1045200:CDS
CTAGTAATCTTGCTGATGTT+AGG 0.368970 7_2:+4427675 Msa1045200:CDS
TCTTTCAATGACTTTGATAA+TGG 0.377205 7_2:-4427249 None:intergenic
TTCCTATTCCTTGGTCCAAC+CGG 0.381964 7_2:+4429367 Msa1045200:CDS
ATATCGTAGGTCTGCAGCTC+TGG 0.383932 7_2:-4429044 None:intergenic
GGAAGTGGAACTTCATGCTT+TGG 0.387740 7_2:+4428587 Msa1045200:CDS
CCTGGCTCACCTATAATAAC+AGG 0.397627 7_2:-4427593 None:intergenic
ACTGGTTCCTTCCTATTCCT+TGG 0.398409 7_2:+4429358 Msa1045200:CDS
GCAGACTTGTTGACAGAATC+TGG 0.398994 7_2:+4427356 Msa1045200:CDS
TCTTCATCACGTCCAATAAC+AGG 0.401467 7_2:-4427524 None:intergenic
TCAGGCCAGAATTGTTGAAT+AGG 0.402278 7_2:+4430122 Msa1045200:CDS
CACCGACATTGGAAATTGCT+TGG 0.405651 7_2:-4427127 None:intergenic
TCAAGGTTGTCAATTTCCTC+TGG 0.405921 7_2:-4428546 None:intergenic
TTCTCGGTATCAAGATTGAT+TGG 0.410667 7_2:+4429487 Msa1045200:CDS
ATGTCTAGTCGGTACATAAC+TGG 0.411033 7_2:+4428115 Msa1045200:CDS
CGAAGAATACTAATGGTATC+AGG 0.411773 7_2:-4428019 None:intergenic
CAACAACACTTGATGAATAT+AGG 0.412222 7_2:+4427927 Msa1045200:CDS
GTCACGCGGCGACACTCATT+TGG 0.416515 7_2:+4427289 Msa1045200:CDS
TAGTCGCTGGTACTCAGTAT+AGG 0.418958 7_2:+4427723 Msa1045200:CDS
CTAACATCAGCAAGATTACT+AGG 0.421459 7_2:-4427674 None:intergenic
ATCTGGTGTGGCTGCTTCTA+GGG 0.427152 7_2:+4427373 Msa1045200:CDS
ATTCATCTTGTTCTCGGTGC+CGG 0.428777 7_2:+4427827 Msa1045200:CDS
TAAAATCCACAGTTCTTCCT+TGG 0.449120 7_2:-4429979 None:intergenic
CAGCGACAGCTTTAACTGCT+TGG 0.449855 7_2:-4429288 None:intergenic
TTGGCTAAGAGAATAGTTAG+AGG 0.451148 7_2:+4427644 Msa1045200:CDS
ATTTGAAAGGAGGTTTCAAC+AGG 0.451749 7_2:+4427973 Msa1045200:CDS
ACTTTAATTTCTGATCTCAA+TGG 0.452305 7_2:+4427095 Msa1045200:CDS
GAAAATCTTCGCAGTAAAGA+AGG 0.454419 7_2:+4427410 Msa1045200:CDS
TGCTCGCGACCGAGTAATGC+TGG 0.456834 7_2:+4430084 Msa1045200:CDS
TGAAAGGAAGAGAATGCAAC+TGG 0.457893 7_2:+4428566 Msa1045200:CDS
TGACGAAGGTGGACAATTAA+CGG 0.460785 7_2:+4429841 Msa1045200:CDS
ACTTGACATGTCGGAATACA+TGG 0.463181 7_2:+4429459 Msa1045200:CDS
GAAGAGAATGCAACTGGAAG+TGG 0.463753 7_2:+4428572 Msa1045200:CDS
ACAACCTCAGCTATTTGATC+TGG 0.466362 7_2:-4429163 None:intergenic
ATCAATTGCTCGTGAGATAG+AGG 0.468800 7_2:-4430169 None:intergenic
AGAGCTCCTCTTTGCACTAC+AGG 0.471282 7_2:+4428997 Msa1045200:CDS
TAGGCCACGAAGAATACTAA+TGG 0.472618 7_2:-4428026 None:intergenic
GCCAGAATTGTTGAATAGGC+TGG 0.473395 7_2:+4430126 Msa1045200:CDS
AGAGCTGCAGACCTACGATA+TGG 0.473492 7_2:+4429046 Msa1045200:CDS
AATCTTGAAGGTAGCACTGA+TGG 0.474434 7_2:+4429100 Msa1045200:CDS
GGGATTGTCGATGCTGAAAC+TGG 0.476416 7_2:+4430546 Msa1045200:CDS
CACCGGTTGGACCAAGGAAT+AGG 0.477910 7_2:-4429369 None:intergenic
TAGGCCAAAATGATAAAGAA+AGG 0.482063 7_2:+4429218 Msa1045200:CDS
AGGGCGTCGTCTTCCTGATA+AGG 0.483337 7_2:+4428467 Msa1045200:intron
ACTTCATGCTTTGGAGAAAG+AGG 0.483359 7_2:+4428596 Msa1045200:CDS
AATGATAAAGAAAGGTTGGT+TGG 0.485880 7_2:+4429226 Msa1045200:CDS
AGAAAACTAGCAATAAGTTC+AGG 0.485939 7_2:+4427038 Msa1045200:CDS
AAAGAAAGGTTGGTTGGACT+TGG 0.488358 7_2:+4429232 Msa1045200:CDS
CACAGTTCTTCCTTGGCCAT+CGG 0.490236 7_2:-4429972 None:intergenic
TCTGGTACATGCTGTGGTGG+AGG 0.490797 7_2:-4427218 None:intergenic
ATAGGGGACAATTTGAAGAA+AGG 0.491092 7_2:+4427741 Msa1045200:CDS
GAAAATGGATATGAGGTCAT+TGG 0.492246 7_2:+4430621 Msa1045200:CDS
TGAGCCAGGTGTTGGTAAAA+CGG 0.492934 7_2:+4427607 Msa1045200:CDS
CAAGCAGTTAAAGCTGTCGC+TGG 0.493333 7_2:+4429289 Msa1045200:CDS
ACTGTAAGGCCTTCTCCTTA+CGG 0.493558 7_2:-4429867 None:intergenic
GGCAATTGATTTAGTTGATG+AGG 0.493813 7_2:+4428488 Msa1045200:CDS
CTCGGTGCCGGTCGATGTCA+AGG 0.494184 7_2:+4427839 Msa1045200:CDS
GTGAGATCGAGAGCTGGTCT+AGG 0.495303 7_2:+4429319 Msa1045200:CDS
AGTATAGCAAAGAGAAAGAG+AGG 0.498177 7_2:+4428939 Msa1045200:CDS
ATATAGGAAATATGTTGAAA+AGG 0.498900 7_2:+4427943 Msa1045200:CDS
AACGGCTGTTGTTGAAGGGT+TGG 0.499734 7_2:+4427625 Msa1045200:CDS
TTGCTATACTTCATCTTCAG+AGG 0.500208 7_2:-4428926 None:intergenic
GACGTGATGAAGAGATAAGA+AGG 0.502930 7_2:+4427534 Msa1045200:CDS
CCTGTTATTATAGGTGAGCC+AGG 0.503359 7_2:+4427593 Msa1045200:CDS
AGATTGATTGGTGCACCACC+AGG 0.503361 7_2:+4429499 Msa1045200:CDS
GGTAAAACGGCTGTTGTTGA+AGG 0.506366 7_2:+4427620 Msa1045200:CDS
AGGAAATTGACAACCTTGAA+AGG 0.506457 7_2:+4428550 Msa1045200:CDS
TATAACAATTCACTTCCCTT+AGG 0.506610 7_2:-4430504 None:intergenic
GATACCATTAGTATTCTTCG+TGG 0.506815 7_2:+4428022 Msa1045200:CDS
ATGCATTGATGCTGGTCCTA+AGG 0.506976 7_2:+4430488 Msa1045200:CDS
GACAATTAACGGAAGCCGTA+AGG 0.509021 7_2:+4429852 Msa1045200:CDS
TTCCAAGCAATTTCCAATGT+CGG 0.510415 7_2:+4427125 Msa1045200:CDS
AGAGACTTGGTCGAACAAGC+AGG 0.512072 7_2:+4427491 Msa1045200:CDS
GGTCATTGGCGATGATGAAA+TGG 0.512438 7_2:+4430635 Msa1045200:CDS
CCAAAATGATAAAGAAAGGT+TGG 0.513032 7_2:+4429222 Msa1045200:CDS
TAAAGTGGATGCAAGGTGTA+CGG 0.516884 7_2:-4427078 None:intergenic
CTAATGGTATCAGGCACACT+AGG 0.517122 7_2:-4428010 None:intergenic
AAGCAGTTAAAGCTGTCGCT+GGG 0.520029 7_2:+4429290 Msa1045200:CDS
AAGGAACCAGTTGGTTGTTG+TGG 0.521039 7_2:-4429346 None:intergenic
GGAAGACCACAACAACCAAC+TGG 0.521898 7_2:+4429340 Msa1045200:CDS
TGCTTCAAGTCTTAGATGAC+GGG 0.522426 7_2:+4429942 Msa1045200:CDS
TAAACGAGTCACTGGTATAC+CGG 0.522890 7_2:-4429197 None:intergenic
AAAATCACGTATCCATTATG+TGG 0.523551 7_2:-4430752 None:intergenic
TTCCTTGGTCCAACCGGTGT+CGG 0.525904 7_2:+4429373 Msa1045200:CDS
TTATACCGTGTGGAAAAGAA+TGG 0.527875 7_2:+4430522 Msa1045200:CDS
ACAATTTGAAGAAAGGTTGA+AGG 0.528800 7_2:+4427748 Msa1045200:CDS
GGTATACCAGTGACTCGTTT+AGG 0.529289 7_2:+4429199 Msa1045200:CDS
AAAGTGGATGCAAGGTGTAC+GGG 0.529432 7_2:-4427077 None:intergenic
GAGAAATACGAGGGTCATCA+TGG 0.530329 7_2:+4428052 Msa1045200:CDS
ATTGAGATCAGAAATTAAAG+TGG 0.531542 7_2:-4427093 None:intergenic
CATTGATCCTTGACATCGAC+CGG 0.533522 7_2:-4427846 None:intergenic
CGGTCGATGTCAAGGATCAA+TGG 0.534003 7_2:+4427847 Msa1045200:CDS
ATCTCACGAGCAATTGATGA+AGG 0.536962 7_2:+4430174 Msa1045200:CDS
GATATGGGAGCGTTAGTCGC+TGG 0.541820 7_2:+4427710 Msa1045200:CDS
TGACGATGAAAATGGATATG+AGG 0.542396 7_2:+4430614 Msa1045200:CDS
GCAAGTATATAATCTAGTGC+TGG 0.545509 7_2:-4430268 None:intergenic
AGATTGCATAGTAGAGTTGT+GGG 0.545910 7_2:+4429259 Msa1045200:CDS
ATTATAGGTGAGCCAGGTGT+TGG 0.546216 7_2:+4427599 Msa1045200:CDS
CTTTGATAATGAAAATCAGA+TGG 0.549900 7_2:+4429432 Msa1045200:CDS
CAGATTGCATAGTAGAGTTG+TGG 0.550710 7_2:+4429258 Msa1045200:CDS
AAAAGGATGCAGCATTTGAA+AGG 0.550728 7_2:+4427960 Msa1045200:CDS
AGTGGAAGATGCTGAAGGGA+AGG 0.551183 7_2:+4427784 Msa1045200:CDS
TGACGAATCTGCACGTTCCG+TGG 0.559545 7_2:+4427151 Msa1045200:CDS
CGGTAAAACAGAACTTGCTA+AGG 0.560192 7_2:+4429393 Msa1045200:CDS
AAGAGATAAGAAGGGTTGTG+AGG 0.561006 7_2:+4427543 Msa1045200:CDS
TAACGGAAGCCGTAAGGAGA+AGG 0.562264 7_2:+4429858 Msa1045200:CDS
AGGATGCAGCATTTGAAAGG+AGG 0.563288 7_2:+4427963 Msa1045200:CDS
CTGCTTCAAGTCTTAGATGA+CGG 0.564051 7_2:+4429941 Msa1045200:CDS
TGCTGAGAGAGGAATTGCAT+TGG 0.564643 7_2:+4430234 Msa1045200:CDS
AAGAAGTGGAAGATGCTGAA+GGG 0.565725 7_2:+4427780 Msa1045200:CDS
ACGTGATGAAGAGATAAGAA+GGG 0.566866 7_2:+4427535 Msa1045200:CDS
CAAGCAATTTCCAATGTCGG+TGG 0.569212 7_2:+4427128 Msa1045200:CDS
CAAAGTCATTGAAAGAGCAC+AGG 0.574398 7_2:+4427256 Msa1045200:CDS
GGTGCCGAGCATCTCATAAG+TGG 0.576050 7_2:+4430034 Msa1045200:CDS
AGATTCGTCACCACCGACAT+TGG 0.576451 7_2:-4427138 None:intergenic
ATCTTGAAGGTAGCACTGAT+GGG 0.576475 7_2:+4429101 Msa1045200:CDS
CGTGGACAACTTAGATGCAT+CGG 0.576960 7_2:+4427902 Msa1045200:CDS
CAGAAATTAAAGTGGATGCA+AGG 0.580621 7_2:-4427085 None:intergenic
TTCAAACCTATGCTTGCTCG+TGG 0.581065 7_2:+4427884 Msa1045200:CDS
GAGGTTGTAAGCCGATGGAC+CGG 0.583520 7_2:+4429178 Msa1045200:CDS
AGTTGTCCACGAGCAAGCAT+AGG 0.583829 7_2:-4427890 None:intergenic
TGCATTGATGCTGGTCCTAA+GGG 0.583971 7_2:+4430489 Msa1045200:CDS
AGCAATTGATGAAGGTTGCA+AGG 0.584736 7_2:+4430182 Msa1045200:CDS
TAGCTGAGGTTGTAAGCCGA+TGG 0.585089 7_2:+4429173 Msa1045200:CDS
ATTATCATGACTTCAAACCT+TGG 0.585540 7_2:+4430013 Msa1045200:CDS
GGTTGCAAGGTTGCAAATGA+AGG 0.587123 7_2:+4430195 Msa1045200:CDS
GAGCTTTCTGGTACATGCTG+TGG 0.588543 7_2:-4427224 None:intergenic
CTTTCTGGTACATGCTGTGG+TGG 0.588981 7_2:-4427221 None:intergenic
TACCGTGTGGAAAAGAATGG+AGG 0.589660 7_2:+4430525 Msa1045200:CDS
ATATGGTGCAATTGAAGAGG+TGG 0.594534 7_2:+4429063 Msa1045200:CDS
AAGTCCACTTATGAGATGCT+CGG 0.596761 7_2:-4430038 None:intergenic
TTGATGCTGACGGAAACTGT+TGG 0.601313 7_2:+4429139 Msa1045200:CDS
GAAAACTTATGGTAGAGACT+TGG 0.601752 7_2:+4427478 Msa1045200:CDS
TACCGACACCGGTTGGACCA+AGG 0.602227 7_2:-4429375 None:intergenic
ACCGTGTGGAAAAGAATGGA+GGG 0.604577 7_2:+4430526 Msa1045200:CDS
ACAACTGTATGCATTGATGC+TGG 0.605777 7_2:+4430480 Msa1045200:CDS
AAAATCTTCGCAGTAAAGAA+GGG 0.606540 7_2:+4427411 Msa1045200:CDS
AAAGAAGTGGAAGATGCTGA+AGG 0.609450 7_2:+4427779 Msa1045200:CDS
CAGCCTCCTGTAGTGCAAAG+AGG 0.611133 7_2:-4429003 None:intergenic
GTAAAACGGCTGTTGTTGAA+GGG 0.614423 7_2:+4427621 Msa1045200:CDS
GCTGTAGTGAGATCGAGAGC+TGG 0.614617 7_2:+4429313 Msa1045200:CDS
TGTGGTGGAGGCTGTTGAGT+AGG 0.617546 7_2:-4427206 None:intergenic
GGTAGCACTGATGGGAACAA+AGG 0.620040 7_2:+4429109 Msa1045200:CDS
GCTAGTCGTCTTGCTGAGAG+AGG 0.621064 7_2:+4430223 Msa1045200:CDS
GGGAGATTAACCGATGGCCA+AGG 0.621274 7_2:+4429962 Msa1045200:CDS
AAGTGAATTGTTATACCGTG+TGG 0.624493 7_2:+4430512 Msa1045200:CDS
ACGATATGGTGCAATTGAAG+AGG 0.629693 7_2:+4429060 Msa1045200:CDS
TTGCAGCTCAGATGTCTAGT+CGG 0.630610 7_2:+4428104 Msa1045200:CDS
TCACTGGTATACCGGTCCAT+CGG 0.631048 7_2:-4429189 None:intergenic
CTTCAATTGCACCATATCGT+AGG 0.632100 7_2:-4429057 None:intergenic
TCGGTCGCGAGCAACTTGCA+TGG 0.632357 7_2:-4430074 None:intergenic
GAGACTTGGTCGAACAAGCA+GGG 0.634624 7_2:+4427492 Msa1045200:CDS
GATGGTTAGACTTGACATGT+CGG 0.635197 7_2:+4429450 Msa1045200:CDS
TATATTGGACATGACGAAGG+TGG 0.635832 7_2:+4429830 Msa1045200:CDS
AGGTATATTGGACATGACGA+AGG 0.636676 7_2:+4429827 Msa1045200:intron
GAGCTGCAACAACAATTGCA+CGG 0.636905 7_2:-4428090 None:intergenic
TCATGCTTTGGAGAAAGAGG+AGG 0.637227 7_2:+4428599 Msa1045200:CDS
GTCGCTGGTACTCAGTATAG+GGG 0.640895 7_2:+4427725 Msa1045200:CDS
AGGTGAGAACTTGATGCTGA+CGG 0.642271 7_2:+4429129 Msa1045200:CDS
ATGGTGCTAGACCAATTAGA+AGG 0.648738 7_2:+4430391 Msa1045200:CDS
TTATGAGATGCTCGGCACCA+AGG 0.663875 7_2:-4430030 None:intergenic
CAGGAAGCACAGAAGTCACG+CGG 0.664958 7_2:+4427275 Msa1045200:CDS
CACTACAGGAGGCTGAGAGG+CGG 0.665779 7_2:+4429011 Msa1045200:CDS
AGGAATAGGAAGGAACCAGT+TGG 0.666288 7_2:-4429355 None:intergenic
GTGCTAGACCAATTAGAAGG+TGG 0.668833 7_2:+4430394 Msa1045200:CDS
GGTTGGACCAAGGAATAGGA+AGG 0.669647 7_2:-4429365 None:intergenic
GCTCCTCTTTGCACTACAGG+AGG 0.670257 7_2:+4429000 Msa1045200:CDS
CTTGTTGACAGAATCTGGTG+TGG 0.670357 7_2:+4427361 Msa1045200:CDS
TTGCACTACAGGAGGCTGAG+AGG 0.672526 7_2:+4429008 Msa1045200:CDS
TCAACTTGACAGTCAGCCAG+AGG 0.673368 7_2:+4428530 Msa1045200:CDS
AGCAGTTAAAGCTGTCGCTG+GGG 0.679969 7_2:+4429291 Msa1045200:CDS
GATTGATTGGTGCACCACCA+GGG 0.685797 7_2:+4429500 Msa1045200:CDS
GGCCTAAAAGAGAAATACGA+GGG 0.688403 7_2:+4428043 Msa1045200:CDS
CGATGGCCAAGGAAGAACTG+TGG 0.695583 7_2:+4429973 Msa1045200:CDS
TGGACCAGATCAAATAGCTG+AGG 0.699839 7_2:+4429159 Msa1045200:CDS
AATACAATATCTTACCCTGG+TGG 0.701412 7_2:-4429514 None:intergenic
TGGCCTAAAAGAGAAATACG+AGG 0.725492 7_2:+4428042 Msa1045200:CDS
GATGACGGGAGATTAACCGA+TGG 0.733986 7_2:+4429956 Msa1045200:CDS
AAGGTGGCTTGAGAAGAATG+TGG 0.734759 7_2:+4430410 Msa1045200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATCTCCAAATATAATTT+AGG - chr7_2:4429567-4429586 None:intergenic 15.0%
!!! GATAAAACATTTAATTTGTT+TGG + chr7_2:4429581-4429600 Msa1045200:intron 15.0%
!! TCTTTAAATATTTCAAATGT+CGG + chr7_2:4429630-4429649 Msa1045200:intron 15.0%
!!! ATCTTTTGTTAGTAATATTA+TGG - chr7_2:4430794-4430813 None:intergenic 15.0%
!! ATATAGGAAATATGTTGAAA+AGG + chr7_2:4427943-4427962 Msa1045200:CDS 20.0%
!! ATGAGATGATAAATAGTTAT+AGG + chr7_2:4428297-4428316 Msa1045200:intron 20.0%
!!! TTGAGTTTTTCTTTTAACTA+AGG + chr7_2:4428664-4428683 Msa1045200:intron 20.0%
!!! TGAGTTTTTCTTTTAACTAA+GGG + chr7_2:4428665-4428684 Msa1045200:intron 20.0%
!! GAATAAAACTAAAAAATGAG+TGG + chr7_2:4428777-4428796 Msa1045200:intron 20.0%
!! ATTAGAATAAAGGAGAATAA+TGG - chr7_2:4428850-4428869 None:intergenic 20.0%
!! GTCATCAATAATTAGAATAA+AGG - chr7_2:4428860-4428879 None:intergenic 20.0%
!! AATGCAATAAAAAATCTTGA+AGG + chr7_2:4429088-4429107 Msa1045200:CDS 20.0%
!! GTAAAAGCCTAAATTATATT+TGG + chr7_2:4429557-4429576 Msa1045200:intron 20.0%
!! TTTCTTGAGATTTATTTAAC+CGG + chr7_2:4429664-4429683 Msa1045200:intron 20.0%
!! AAGTCTAAACAAGTATTAAT+AGG - chr7_2:4429739-4429758 None:intergenic 20.0%
!!! ATTTTAATTCAGATACCAAA+TGG + chr7_2:4430582-4430601 Msa1045200:CDS 20.0%
!!! CTTAAAGCAAAGAATTATTT+TGG - chr7_2:4430884-4430903 None:intergenic 20.0%
!!! TTGCTTTAAGTTTTTCTTTT+TGG + chr7_2:4430894-4430913 Msa1045200:three_prime_UTR 20.0%
! ATTGAGATCAGAAATTAAAG+TGG - chr7_2:4427096-4427115 None:intergenic 25.0%
!! ACTTTAATTTCTGATCTCAA+TGG + chr7_2:4427095-4427114 Msa1045200:CDS 25.0%
!!! TTGTTTTAAAACTCTTTCCA+CGG - chr7_2:4427171-4427190 None:intergenic 25.0%
! TCTTTCAATGACTTTGATAA+TGG - chr7_2:4427252-4427271 None:intergenic 25.0%
!!! TTTGAAGCATTGAAAACTTA+TGG + chr7_2:4427467-4427486 Msa1045200:CDS 25.0%
! AAGAACAATCCTGTTATTAT+AGG + chr7_2:4427584-4427603 Msa1045200:CDS 25.0%
! AACAAGTAAAAAGAAACAGA+TGG - chr7_2:4428171-4428190 None:intergenic 25.0%
!!! TTTCTGTTTTGTGTTTGTTA+AGG + chr7_2:4428447-4428466 Msa1045200:intron 25.0%
!!! TTCTGTTTTGTGTTTGTTAA+GGG + chr7_2:4428448-4428467 Msa1045200:intron 25.0%
!!! TTTTTCTTTTAACTAAGGGT+TGG + chr7_2:4428669-4428688 Msa1045200:intron 25.0%
! TAAAACTAAAAAATGAGTGG+TGG + chr7_2:4428780-4428799 Msa1045200:intron 25.0%
!!! CTTTGATAATGAAAATCAGA+TGG + chr7_2:4429432-4429451 Msa1045200:CDS 25.0%
! AAAAATACAATATCTTACCC+TGG - chr7_2:4429520-4429539 None:intergenic 25.0%
! ATAAACCAAATTTCAAATGC+CGG - chr7_2:4429686-4429705 None:intergenic 25.0%
!!! AAATGAGTTTTCAGGTATAT+TGG + chr7_2:4429815-4429834 Msa1045200:intron 25.0%
! GATTATATAAGATCACTTAC+AGG - chr7_2:4430307-4430326 None:intergenic 25.0%
!!! ACTATGTTTTATTGTTGTGT+AGG + chr7_2:4430365-4430384 Msa1045200:intron 25.0%
!!! ATGGAAGAATAAGCTTTATT+AGG + chr7_2:4430654-4430673 Msa1045200:exon 25.0%
! GCTAATAAAAGAGATACTTA+TGG - chr7_2:4430723-4430742 None:intergenic 25.0%
!!! ATCTCTTTTATTAGCTCTTT+TGG + chr7_2:4430728-4430747 Msa1045200:three_prime_UTR 25.0%
! TTACTAACAAAAGATGCTTT+AGG + chr7_2:4430799-4430818 Msa1045200:three_prime_UTR 25.0%
! TACTAACAAAAGATGCTTTA+GGG + chr7_2:4430800-4430819 Msa1045200:three_prime_UTR 25.0%
! TTCATGAACAAAAACTAAAC+AGG - chr7_2:4430931-4430950 None:intergenic 25.0%
!! AAGTTCATTCTCATCAATTT+TGG + chr7_2:4430981-4431000 Msa1045200:three_prime_UTR 25.0%
!!! GTTTTGTTTGTAAACTTTCG+TGG - chr7_2:4426996-4427015 None:intergenic 30.0%
AGAAAACTAGCAATAAGTTC+AGG + chr7_2:4427038-4427057 Msa1045200:CDS 30.0%
!! GCAATTGATCGATTGATTTT+GGG + chr7_2:4427311-4427330 Msa1045200:CDS 30.0%
!! ATTGATTTTGGGAATTCTTG+AGG + chr7_2:4427322-4427341 Msa1045200:CDS 30.0%
AAAATCTTCGCAGTAAAGAA+GGG + chr7_2:4427411-4427430 Msa1045200:CDS 30.0%
TGATGTTAGGTTATTTGCTT+TGG + chr7_2:4427688-4427707 Msa1045200:CDS 30.0%
! TAGGTTATTTGCTTTGGATA+TGG + chr7_2:4427694-4427713 Msa1045200:CDS 30.0%
! AGGTTATTTGCTTTGGATAT+GGG + chr7_2:4427695-4427714 Msa1045200:CDS 30.0%
ACAATTTGAAGAAAGGTTGA+AGG + chr7_2:4427748-4427767 Msa1045200:CDS 30.0%
GATGAAATTCATCTTGTTCT+CGG + chr7_2:4427821-4427840 Msa1045200:CDS 30.0%
CAACAACACTTGATGAATAT+AGG + chr7_2:4427927-4427946 Msa1045200:CDS 30.0%
ACTAAATCAATTGCCTTATC+AGG - chr7_2:4428483-4428502 None:intergenic 30.0%
!! GAGAATAATGGATGTTACAA+AGG - chr7_2:4428838-4428857 None:intergenic 30.0%
! CTAATTATTGATGACATTGC+AGG + chr7_2:4428865-4428884 Msa1045200:intron 30.0%
TAGGCCAAAATGATAAAGAA+AGG + chr7_2:4429218-4429237 Msa1045200:CDS 30.0%
! CCAACCTTTCTTTATCATTT+TGG - chr7_2:4429225-4429244 None:intergenic 30.0%
CCAAAATGATAAAGAAAGGT+TGG + chr7_2:4429222-4429241 Msa1045200:CDS 30.0%
! AATGATAAAGAAAGGTTGGT+TGG + chr7_2:4429226-4429245 Msa1045200:CDS 30.0%
GGAATACATGGAAAAATTCT+CGG + chr7_2:4429471-4429490 Msa1045200:CDS 30.0%
!! CATTTAATTTGTTTGGTCCA+TGG + chr7_2:4429588-4429607 Msa1045200:intron 30.0%
! AAATTTGTAGCTCTTTTCCA+TGG - chr7_2:4429608-4429627 None:intergenic 30.0%
ATGGAAAAGAGCTACAAATT+TGG + chr7_2:4429607-4429626 Msa1045200:intron 30.0%
! TTTAACCGGCATTTGAAATT+TGG + chr7_2:4429678-4429697 Msa1045200:intron 30.0%
! TGATTGTGAAATGAGTTTTC+AGG + chr7_2:4429807-4429826 Msa1045200:intron 30.0%
!! TCAAAAAGTACTAGACTGTA+AGG - chr7_2:4429884-4429903 None:intergenic 30.0%
! ACTTTTTGATGAAGTTGAGA+AGG + chr7_2:4429895-4429914 Msa1045200:CDS 30.0%
ATTATCATGACTTCAAACCT+TGG + chr7_2:4430013-4430032 Msa1045200:CDS 30.0%
! TTTTTACTTCCAGCATTACT+CGG - chr7_2:4430096-4430115 None:intergenic 30.0%
!! TGGAAGTAAAAAAGCATTTC+AGG + chr7_2:4430104-4430123 Msa1045200:CDS 30.0%
TTTATTGTTGTGTAGGTGTA+TGG + chr7_2:4430372-4430391 Msa1045200:intron 30.0%
GCTATCTATGATGCTTATAA+AGG + chr7_2:4430440-4430459 Msa1045200:CDS 30.0%
TATAACAATTCACTTCCCTT+AGG - chr7_2:4430507-4430526 None:intergenic 30.0%
AAAATCACGTATCCATTATG+TGG - chr7_2:4430755-4430774 None:intergenic 30.0%
! AATGGATACGTGATTTTTGT+TGG + chr7_2:4430758-4430777 Msa1045200:three_prime_UTR 30.0%
! TTCATTCTCATCAATTTTGG+AGG + chr7_2:4430984-4431003 Msa1045200:three_prime_UTR 30.0%
! TCATTCTCATCAATTTTGGA+GGG + chr7_2:4430985-4431004 Msa1045200:three_prime_UTR 30.0%
CAGAAATTAAAGTGGATGCA+AGG - chr7_2:4427088-4427107 None:intergenic 35.0%
TTCCAAGCAATTTCCAATGT+CGG + chr7_2:4427125-4427144 Msa1045200:CDS 35.0%
!! TTGATAATGGAAGAGCTTTC+TGG - chr7_2:4427239-4427258 None:intergenic 35.0%
!! GGCAATTGATCGATTGATTT+TGG + chr7_2:4427310-4427329 Msa1045200:CDS 35.0%
!! TGCTTCTAGGGTTAAATTAG+AGG + chr7_2:4427385-4427404 Msa1045200:CDS 35.0%
GAAAATCTTCGCAGTAAAGA+AGG + chr7_2:4427410-4427429 Msa1045200:CDS 35.0%
GAAAACTTATGGTAGAGACT+TGG + chr7_2:4427478-4427497 Msa1045200:CDS 35.0%
ACGTGATGAAGAGATAAGAA+GGG + chr7_2:4427535-4427554 Msa1045200:CDS 35.0%
! TTGTGAGGATTTTGTCAAGA+AGG + chr7_2:4427558-4427577 Msa1045200:CDS 35.0%
TTGGCTAAGAGAATAGTTAG+AGG + chr7_2:4427644-4427663 Msa1045200:CDS 35.0%
CTAACATCAGCAAGATTACT+AGG - chr7_2:4427677-4427696 None:intergenic 35.0%
CTAGTAATCTTGCTGATGTT+AGG + chr7_2:4427675-4427694 Msa1045200:CDS 35.0%
ATAGGGGACAATTTGAAGAA+AGG + chr7_2:4427741-4427760 Msa1045200:CDS 35.0%
AAAAGGATGCAGCATTTGAA+AGG + chr7_2:4427960-4427979 Msa1045200:CDS 35.0%
ATTTGAAAGGAGGTTTCAAC+AGG + chr7_2:4427973-4427992 Msa1045200:CDS 35.0%
CGAAGAATACTAATGGTATC+AGG - chr7_2:4428022-4428041 None:intergenic 35.0%
GATACCATTAGTATTCTTCG+TGG + chr7_2:4428022-4428041 Msa1045200:CDS 35.0%
CAAGATGTATTGAGTGTGAA+TGG + chr7_2:4428394-4428413 Msa1045200:intron 35.0%
! AGTGTGAATGGTTTTTGTTG+TGG + chr7_2:4428406-4428425 Msa1045200:intron 35.0%
!! TTGTTGTGGTTTTGCTAACA+TGG + chr7_2:4428420-4428439 Msa1045200:intron 35.0%
! GGCAATTGATTTAGTTGATG+AGG + chr7_2:4428488-4428507 Msa1045200:CDS 35.0%
AGGAAATTGACAACCTTGAA+AGG + chr7_2:4428550-4428569 Msa1045200:CDS 35.0%
TTGCTATACTTCATCTTCAG+AGG - chr7_2:4428929-4428948 None:intergenic 35.0%
AGTATAGCAAAGAGAAAGAG+AGG + chr7_2:4428939-4428958 Msa1045200:CDS 35.0%
AGATTGCATAGTAGAGTTGT+GGG + chr7_2:4429259-4429278 Msa1045200:CDS 35.0%
TTCTCGGTATCAAGATTGAT+TGG + chr7_2:4429487-4429506 Msa1045200:CDS 35.0%
AATACAATATCTTACCCTGG+TGG - chr7_2:4429517-4429536 None:intergenic 35.0%
TAAAATCCACAGTTCTTCCT+TGG - chr7_2:4429982-4430001 None:intergenic 35.0%
! AAGGAAGAACTGTGGATTTT+AGG + chr7_2:4429981-4430000 Msa1045200:CDS 35.0%
GCAAGTATATAATCTAGTGC+TGG - chr7_2:4430271-4430290 None:intergenic 35.0%
AAGTGAATTGTTATACCGTG+TGG + chr7_2:4430512-4430531 Msa1045200:CDS 35.0%
TTATACCGTGTGGAAAAGAA+TGG + chr7_2:4430522-4430541 Msa1045200:CDS 35.0%
! CCATTTTCATCGTCAGTTTT+TGG - chr7_2:4430609-4430628 None:intergenic 35.0%
CCAAAAACTGACGATGAAAA+TGG + chr7_2:4430606-4430625 Msa1045200:CDS 35.0%
TGACGATGAAAATGGATATG+AGG + chr7_2:4430614-4430633 Msa1045200:CDS 35.0%
GAAAATGGATATGAGGTCAT+TGG + chr7_2:4430621-4430640 Msa1045200:CDS 35.0%
TAAAGTGGATGCAAGGTGTA+CGG - chr7_2:4427081-4427100 None:intergenic 40.0%
! CAAAGTCATTGAAAGAGCAC+AGG + chr7_2:4427256-4427275 Msa1045200:CDS 40.0%
GGGAAACTTGATCCTGTTAT+TGG + chr7_2:4427512-4427531 Msa1045200:CDS 40.0%
TCTTCATCACGTCCAATAAC+AGG - chr7_2:4427527-4427546 None:intergenic 40.0%
GACGTGATGAAGAGATAAGA+AGG + chr7_2:4427534-4427553 Msa1045200:CDS 40.0%
AAGAGATAAGAAGGGTTGTG+AGG + chr7_2:4427543-4427562 Msa1045200:CDS 40.0%
GTAAAACGGCTGTTGTTGAA+GGG + chr7_2:4427621-4427640 Msa1045200:CDS 40.0%
!!! GAAGGCAGTTTTGAAAGAAG+TGG + chr7_2:4427766-4427785 Msa1045200:CDS 40.0%
AAAGAAGTGGAAGATGCTGA+AGG + chr7_2:4427779-4427798 Msa1045200:CDS 40.0%
AAGAAGTGGAAGATGCTGAA+GGG + chr7_2:4427780-4427799 Msa1045200:CDS 40.0%
TAGGCCACGAAGAATACTAA+TGG - chr7_2:4428029-4428048 None:intergenic 40.0%
TGGCCTAAAAGAGAAATACG+AGG + chr7_2:4428042-4428061 Msa1045200:CDS 40.0%
GGCCTAAAAGAGAAATACGA+GGG + chr7_2:4428043-4428062 Msa1045200:CDS 40.0%
! GACCCTCGTATTTCTCTTTT+AGG - chr7_2:4428048-4428067 None:intergenic 40.0%
ATGTCTAGTCGGTACATAAC+TGG + chr7_2:4428115-4428134 Msa1045200:CDS 40.0%
TCAAGGTTGTCAATTTCCTC+TGG - chr7_2:4428549-4428568 None:intergenic 40.0%
GTTGCATTCTCTTCCTTTCA+AGG - chr7_2:4428566-4428585 None:intergenic 40.0%
TGAAAGGAAGAGAATGCAAC+TGG + chr7_2:4428566-4428585 Msa1045200:CDS 40.0%
!! ACTTCATGCTTTGGAGAAAG+AGG + chr7_2:4428596-4428615 Msa1045200:CDS 40.0%
! TATTGATGACATTGCAGGTG+CGG + chr7_2:4428870-4428889 Msa1045200:intron 40.0%
CTTCAATTGCACCATATCGT+AGG - chr7_2:4429060-4429079 None:intergenic 40.0%
ACGATATGGTGCAATTGAAG+AGG + chr7_2:4429060-4429079 Msa1045200:CDS 40.0%
ATATGGTGCAATTGAAGAGG+TGG + chr7_2:4429063-4429082 Msa1045200:CDS 40.0%
! AATCTTGAAGGTAGCACTGA+TGG + chr7_2:4429100-4429119 Msa1045200:CDS 40.0%
!! ATCTTGAAGGTAGCACTGAT+GGG + chr7_2:4429101-4429120 Msa1045200:CDS 40.0%
ACAACCTCAGCTATTTGATC+TGG - chr7_2:4429166-4429185 None:intergenic 40.0%
TAAACGAGTCACTGGTATAC+CGG - chr7_2:4429200-4429219 None:intergenic 40.0%
! AAAGAAAGGTTGGTTGGACT+TGG + chr7_2:4429232-4429251 Msa1045200:CDS 40.0%
CAGATTGCATAGTAGAGTTG+TGG + chr7_2:4429258-4429277 Msa1045200:CDS 40.0%
! AAGTTCTGTTTTACCGACAC+CGG - chr7_2:4429389-4429408 None:intergenic 40.0%
!! CGGTAAAACAGAACTTGCTA+AGG + chr7_2:4429393-4429412 Msa1045200:CDS 40.0%
GATGGTTAGACTTGACATGT+CGG + chr7_2:4429450-4429469 Msa1045200:CDS 40.0%
ACTTGACATGTCGGAATACA+TGG + chr7_2:4429459-4429478 Msa1045200:CDS 40.0%
AGGTATATTGGACATGACGA+AGG + chr7_2:4429827-4429846 Msa1045200:intron 40.0%
TATATTGGACATGACGAAGG+TGG + chr7_2:4429830-4429849 Msa1045200:CDS 40.0%
TGACGAAGGTGGACAATTAA+CGG + chr7_2:4429841-4429860 Msa1045200:CDS 40.0%
CTGCTTCAAGTCTTAGATGA+CGG + chr7_2:4429941-4429960 Msa1045200:CDS 40.0%
TGCTTCAAGTCTTAGATGAC+GGG + chr7_2:4429942-4429961 Msa1045200:CDS 40.0%
AAGTCCACTTATGAGATGCT+CGG - chr7_2:4430041-4430060 None:intergenic 40.0%
! CATCTCATAAGTGGACTTTC+AGG + chr7_2:4430043-4430062 Msa1045200:CDS 40.0%
TCAGGCCAGAATTGTTGAAT+AGG + chr7_2:4430122-4430141 Msa1045200:CDS 40.0%
TCCAGCCTATTCAACAATTC+TGG - chr7_2:4430130-4430149 None:intergenic 40.0%
ATCAATTGCTCGTGAGATAG+AGG - chr7_2:4430172-4430191 None:intergenic 40.0%
ATCTCACGAGCAATTGATGA+AGG + chr7_2:4430174-4430193 Msa1045200:CDS 40.0%
AGCAATTGATGAAGGTTGCA+AGG + chr7_2:4430182-4430201 Msa1045200:CDS 40.0%
! ATGGTGCTAGACCAATTAGA+AGG + chr7_2:4430391-4430410 Msa1045200:CDS 40.0%
TTCTCAAGCCACCTTCTAAT+TGG - chr7_2:4430405-4430424 None:intergenic 40.0%
! ACAACTGTATGCATTGATGC+TGG + chr7_2:4430480-4430499 Msa1045200:CDS 40.0%
!!! TCGTCAGTTTTTGGTCCATT+TGG - chr7_2:4430600-4430619 None:intergenic 40.0%
! AGCTCTTTTGGTCCACATAA+TGG + chr7_2:4430740-4430759 Msa1045200:three_prime_UTR 40.0%
AAAGTGGATGCAAGGTGTAC+GGG - chr7_2:4427080-4427099 None:intergenic 45.0%
CACCGACATTGGAAATTGCT+TGG - chr7_2:4427130-4427149 None:intergenic 45.0%
CAAGCAATTTCCAATGTCGG+TGG + chr7_2:4427128-4427147 Msa1045200:CDS 45.0%
!! GCAGACTTGTTGACAGAATC+TGG + chr7_2:4427356-4427375 Msa1045200:CDS 45.0%
CTTGTTGACAGAATCTGGTG+TGG + chr7_2:4427361-4427380 Msa1045200:CDS 45.0%
CCTGGCTCACCTATAATAAC+AGG - chr7_2:4427596-4427615 None:intergenic 45.0%
CCTGTTATTATAGGTGAGCC+AGG + chr7_2:4427593-4427612 Msa1045200:CDS 45.0%
ATTATAGGTGAGCCAGGTGT+TGG + chr7_2:4427599-4427618 Msa1045200:CDS 45.0%
!! TGAGCCAGGTGTTGGTAAAA+CGG + chr7_2:4427607-4427626 Msa1045200:CDS 45.0%
GGTAAAACGGCTGTTGTTGA+AGG + chr7_2:4427620-4427639 Msa1045200:CDS 45.0%
TAGTCGCTGGTACTCAGTAT+AGG + chr7_2:4427723-4427742 Msa1045200:CDS 45.0%
AGTCGCTGGTACTCAGTATA+GGG + chr7_2:4427724-4427743 Msa1045200:CDS 45.0%
! ATTCATCTTGTTCTCGGTGC+CGG + chr7_2:4427827-4427846 Msa1045200:CDS 45.0%
CATTGATCCTTGACATCGAC+CGG - chr7_2:4427849-4427868 None:intergenic 45.0%
TTCAAACCTATGCTTGCTCG+TGG + chr7_2:4427884-4427903 Msa1045200:CDS 45.0%
CGTGGACAACTTAGATGCAT+CGG + chr7_2:4427902-4427921 Msa1045200:CDS 45.0%
AGGATGCAGCATTTGAAAGG+AGG + chr7_2:4427963-4427982 Msa1045200:CDS 45.0%
CTAATGGTATCAGGCACACT+AGG - chr7_2:4428013-4428032 None:intergenic 45.0%
GAGAAATACGAGGGTCATCA+TGG + chr7_2:4428052-4428071 Msa1045200:CDS 45.0%
GAGCTGCAACAACAATTGCA+CGG - chr7_2:4428093-4428112 None:intergenic 45.0%
TTGCAGCTCAGATGTCTAGT+CGG + chr7_2:4428104-4428123 Msa1045200:CDS 45.0%
GAAGAGAATGCAACTGGAAG+TGG + chr7_2:4428572-4428591 Msa1045200:CDS 45.0%
GGAAGTGGAACTTCATGCTT+TGG + chr7_2:4428587-4428606 Msa1045200:CDS 45.0%
!! TCATGCTTTGGAGAAAGAGG+AGG + chr7_2:4428599-4428618 Msa1045200:CDS 45.0%
AGGTGAGAACTTGATGCTGA+CGG + chr7_2:4429129-4429148 Msa1045200:CDS 45.0%
TTGATGCTGACGGAAACTGT+TGG + chr7_2:4429139-4429158 Msa1045200:CDS 45.0%
TGGACCAGATCAAATAGCTG+AGG + chr7_2:4429159-4429178 Msa1045200:CDS 45.0%
GGTATACCAGTGACTCGTTT+AGG + chr7_2:4429199-4429218 Msa1045200:CDS 45.0%
! TTTTGGCCTAAACGAGTCAC+TGG - chr7_2:4429208-4429227 None:intergenic 45.0%
AAGCAGTTAAAGCTGTCGCT+GGG + chr7_2:4429290-4429309 Msa1045200:CDS 45.0%
AAGGAACCAGTTGGTTGTTG+TGG - chr7_2:4429349-4429368 None:intergenic 45.0%
AGGAATAGGAAGGAACCAGT+TGG - chr7_2:4429358-4429377 None:intergenic 45.0%
! ACTGGTTCCTTCCTATTCCT+TGG + chr7_2:4429358-4429377 Msa1045200:CDS 45.0%
TTCCTATTCCTTGGTCCAAC+CGG + chr7_2:4429367-4429386 Msa1045200:CDS 45.0%
GACAATTAACGGAAGCCGTA+AGG + chr7_2:4429852-4429871 Msa1045200:CDS 45.0%
ACTGTAAGGCCTTCTCCTTA+CGG - chr7_2:4429870-4429889 None:intergenic 45.0%
GCCAGAATTGTTGAATAGGC+TGG + chr7_2:4430126-4430145 Msa1045200:CDS 45.0%
GGTTGCAAGGTTGCAAATGA+AGG + chr7_2:4430195-4430214 Msa1045200:CDS 45.0%
TGCTGAGAGAGGAATTGCAT+TGG + chr7_2:4430234-4430253 Msa1045200:CDS 45.0%
GTGCTAGACCAATTAGAAGG+TGG + chr7_2:4430394-4430413 Msa1045200:CDS 45.0%
AAGGTGGCTTGAGAAGAATG+TGG + chr7_2:4430410-4430429 Msa1045200:CDS 45.0%
! ATGCATTGATGCTGGTCCTA+AGG + chr7_2:4430488-4430507 Msa1045200:CDS 45.0%
! TGCATTGATGCTGGTCCTAA+GGG + chr7_2:4430489-4430508 Msa1045200:CDS 45.0%
TACCGTGTGGAAAAGAATGG+AGG + chr7_2:4430525-4430544 Msa1045200:CDS 45.0%
ACCGTGTGGAAAAGAATGGA+GGG + chr7_2:4430526-4430545 Msa1045200:CDS 45.0%
! TCCCTCCATTCTTTTCCACA+CGG - chr7_2:4430530-4430549 None:intergenic 45.0%
GGTCATTGGCGATGATGAAA+TGG + chr7_2:4430635-4430654 Msa1045200:CDS 45.0%
AGATTCGTCACCACCGACAT+TGG - chr7_2:4427141-4427160 None:intergenic 50.0%
! CTTTCTGGTACATGCTGTGG+TGG - chr7_2:4427224-4427243 None:intergenic 50.0%
! GAGCTTTCTGGTACATGCTG+TGG - chr7_2:4427227-4427246 None:intergenic 50.0%
AATCTGGTGTGGCTGCTTCT+AGG + chr7_2:4427372-4427391 Msa1045200:CDS 50.0%
ATCTGGTGTGGCTGCTTCTA+GGG + chr7_2:4427373-4427392 Msa1045200:CDS 50.0%
! AGAGACTTGGTCGAACAAGC+AGG + chr7_2:4427491-4427510 Msa1045200:CDS 50.0%
! GAGACTTGGTCGAACAAGCA+GGG + chr7_2:4427492-4427511 Msa1045200:CDS 50.0%
!! ACAGCCGTTTTACCAACACC+TGG - chr7_2:4427614-4427633 None:intergenic 50.0%
AACGGCTGTTGTTGAAGGGT+TGG + chr7_2:4427625-4427644 Msa1045200:CDS 50.0%
GTCGCTGGTACTCAGTATAG+GGG + chr7_2:4427725-4427744 Msa1045200:CDS 50.0%
AGTGGAAGATGCTGAAGGGA+AGG + chr7_2:4427784-4427803 Msa1045200:CDS 50.0%
CGGTCGATGTCAAGGATCAA+TGG + chr7_2:4427847-4427866 Msa1045200:CDS 50.0%
AGTTGTCCACGAGCAAGCAT+AGG - chr7_2:4427893-4427912 None:intergenic 50.0%
TCAACTTGACAGTCAGCCAG+AGG + chr7_2:4428530-4428549 Msa1045200:CDS 50.0%
AGAGCTCCTCTTTGCACTAC+AGG + chr7_2:4428997-4429016 Msa1045200:CDS 50.0%
ATATCGTAGGTCTGCAGCTC+TGG - chr7_2:4429047-4429066 None:intergenic 50.0%
AGAGCTGCAGACCTACGATA+TGG + chr7_2:4429046-4429065 Msa1045200:CDS 50.0%
!! GGTAGCACTGATGGGAACAA+AGG + chr7_2:4429109-4429128 Msa1045200:CDS 50.0%
TAGCTGAGGTTGTAAGCCGA+TGG + chr7_2:4429173-4429192 Msa1045200:CDS 50.0%
TCACTGGTATACCGGTCCAT+CGG - chr7_2:4429192-4429211 None:intergenic 50.0%
! CAGCGACAGCTTTAACTGCT+TGG - chr7_2:4429291-4429310 None:intergenic 50.0%
CAAGCAGTTAAAGCTGTCGC+TGG + chr7_2:4429289-4429308 Msa1045200:CDS 50.0%
AGCAGTTAAAGCTGTCGCTG+GGG + chr7_2:4429291-4429310 Msa1045200:CDS 50.0%
GGAAGACCACAACAACCAAC+TGG + chr7_2:4429340-4429359 Msa1045200:CDS 50.0%
GGTTGGACCAAGGAATAGGA+AGG - chr7_2:4429368-4429387 None:intergenic 50.0%
! TCTGTTTTACCGACACCGGT+TGG - chr7_2:4429385-4429404 None:intergenic 50.0%
AGATTGATTGGTGCACCACC+AGG + chr7_2:4429499-4429518 Msa1045200:CDS 50.0%
GATTGATTGGTGCACCACCA+GGG + chr7_2:4429500-4429519 Msa1045200:CDS 50.0%
TAACGGAAGCCGTAAGGAGA+AGG + chr7_2:4429858-4429877 Msa1045200:CDS 50.0%
!! GATGACGGGAGATTAACCGA+TGG + chr7_2:4429956-4429975 Msa1045200:CDS 50.0%
CACAGTTCTTCCTTGGCCAT+CGG - chr7_2:4429975-4429994 None:intergenic 50.0%
TTATGAGATGCTCGGCACCA+AGG - chr7_2:4430033-4430052 None:intergenic 50.0%
GGGATTGTCGATGCTGAAAC+TGG + chr7_2:4430546-4430565 Msa1045200:CDS 50.0%
TGACGAATCTGCACGTTCCG+TGG + chr7_2:4427151-4427170 Msa1045200:CDS 55.0%
! TGTGGTGGAGGCTGTTGAGT+AGG - chr7_2:4427209-4427228 None:intergenic 55.0%
TCTGGTACATGCTGTGGTGG+AGG - chr7_2:4427221-4427240 None:intergenic 55.0%
! CAGGAAGCACAGAAGTCACG+CGG + chr7_2:4427275-4427294 Msa1045200:CDS 55.0%
!! GATATGGGAGCGTTAGTCGC+TGG + chr7_2:4427710-4427729 Msa1045200:CDS 55.0%
!! AGGGCGTCGTCTTCCTGATA+AGG + chr7_2:4428467-4428486 Msa1045200:intron 55.0%
GCTCCTCTTTGCACTACAGG+AGG + chr7_2:4429000-4429019 Msa1045200:CDS 55.0%
CAGCCTCCTGTAGTGCAAAG+AGG - chr7_2:4429006-4429025 None:intergenic 55.0%
TTGCACTACAGGAGGCTGAG+AGG + chr7_2:4429008-4429027 Msa1045200:CDS 55.0%
GAGGTTGTAAGCCGATGGAC+CGG + chr7_2:4429178-4429197 Msa1045200:CDS 55.0%
GCTGTAGTGAGATCGAGAGC+TGG + chr7_2:4429313-4429332 Msa1045200:CDS 55.0%
! GTGAGATCGAGAGCTGGTCT+AGG + chr7_2:4429319-4429338 Msa1045200:CDS 55.0%
! CACCGGTTGGACCAAGGAAT+AGG - chr7_2:4429372-4429391 None:intergenic 55.0%
TTCCTTGGTCCAACCGGTGT+CGG + chr7_2:4429373-4429392 Msa1045200:CDS 55.0%
GGGAGATTAACCGATGGCCA+AGG + chr7_2:4429962-4429981 Msa1045200:CDS 55.0%
CGATGGCCAAGGAAGAACTG+TGG + chr7_2:4429973-4429992 Msa1045200:CDS 55.0%
! GGTGCCGAGCATCTCATAAG+TGG + chr7_2:4430034-4430053 Msa1045200:CDS 55.0%
GCTAGTCGTCTTGCTGAGAG+AGG + chr7_2:4430223-4430242 Msa1045200:CDS 55.0%
GTCACGCGGCGACACTCATT+TGG + chr7_2:4427289-4427308 Msa1045200:CDS 60.0%
CACTACAGGAGGCTGAGAGG+CGG + chr7_2:4429011-4429030 Msa1045200:CDS 60.0%
! TACCGACACCGGTTGGACCA+AGG - chr7_2:4429378-4429397 None:intergenic 60.0%
TCGGTCGCGAGCAACTTGCA+TGG - chr7_2:4430077-4430096 None:intergenic 60.0%
TGCTCGCGACCGAGTAATGC+TGG + chr7_2:4430084-4430103 Msa1045200:CDS 60.0%
!! CTCGGTGCCGGTCGATGTCA+AGG + chr7_2:4427839-4427858 Msa1045200:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 4426982 4431058 4426982 ID=Msa1045200;Name=Msa1045200
chr7_2 mRNA 4426982 4431058 4426982 ID=Msa1045200-mRNA-1;Parent=Msa1045200;Name=Msa1045200-mRNA-1;_AED=0.02;_eAED=0.02;_QI=5|1|1|1|1|1|5|393|907
chr7_2 exon 4426982 4428136 4426982 ID=Msa1045200-mRNA-1:exon:1039;Parent=Msa1045200-mRNA-1
chr7_2 exon 4428469 4428650 4428469 ID=Msa1045200-mRNA-1:exon:1040;Parent=Msa1045200-mRNA-1
chr7_2 exon 4428887 4429521 4428887 ID=Msa1045200-mRNA-1:exon:1041;Parent=Msa1045200-mRNA-1
chr7_2 exon 4429829 4430306 4429829 ID=Msa1045200-mRNA-1:exon:1042;Parent=Msa1045200-mRNA-1
chr7_2 exon 4430387 4431058 4430387 ID=Msa1045200-mRNA-1:exon:1043;Parent=Msa1045200-mRNA-1
chr7_2 five_prime_UTR 4426982 4426986 4426982 ID=Msa1045200-mRNA-1:five_prime_utr;Parent=Msa1045200-mRNA-1
chr7_2 CDS 4426987 4428136 4426987 ID=Msa1045200-mRNA-1:cds;Parent=Msa1045200-mRNA-1
chr7_2 CDS 4428469 4428650 4428469 ID=Msa1045200-mRNA-1:cds;Parent=Msa1045200-mRNA-1
chr7_2 CDS 4428887 4429521 4428887 ID=Msa1045200-mRNA-1:cds;Parent=Msa1045200-mRNA-1
chr7_2 CDS 4429829 4430306 4429829 ID=Msa1045200-mRNA-1:cds;Parent=Msa1045200-mRNA-1
chr7_2 CDS 4430387 4430665 4430387 ID=Msa1045200-mRNA-1:cds;Parent=Msa1045200-mRNA-1
chr7_2 three_prime_UTR 4430666 4431058 4430666 ID=Msa1045200-mRNA-1:three_prime_utr;Parent=Msa1045200-mRNA-1
Gene Sequence

>Msa1045200

ATGGATCCACGAAAGTTTACAAACAAAACAAACGAATCATTTGCTGTTGCTAGAAAACTAGCAATAAGTTCAGGACATGCTCAGCTCACTCCCGTACACCTTGCATCCACTTTAATTTCTGATCTCAATGGTATATTTTTCCAAGCAATTTCCAATGTCGGTGGTGACGAATCTGCACGTTCCGTGGAAAGAGTTTTAAAACAAGCACTGAAAAAATATCCTACTCAACAGCCTCCACCACAGCATGTACCAGAAAGCTCTTCCATTATCAAAGTCATTGAAAGAGCACAGGAAGCACAGAAGTCACGCGGCGACACTCATTTGGCAATTGATCGATTGATTTTGGGAATTCTTGAGGATTCTCATATTGCAGACTTGTTGACAGAATCTGGTGTGGCTGCTTCTAGGGTTAAATTAGAGGTTGAAAATCTTCGCAGTAAAGAAGGGACGAAAGTTGAGAGTGCTTGTAGTGACAATAAATTTGAAGCATTGAAAACTTATGGTAGAGACTTGGTCGAACAAGCAGGGAAACTTGATCCTGTTATTGGACGTGATGAAGAGATAAGAAGGGTTGTGAGGATTTTGTCAAGAAGGACAAAGAACAATCCTGTTATTATAGGTGAGCCAGGTGTTGGTAAAACGGCTGTTGTTGAAGGGTTGGCTAAGAGAATAGTTAGAGGAGATGTTCCTAGTAATCTTGCTGATGTTAGGTTATTTGCTTTGGATATGGGAGCGTTAGTCGCTGGTACTCAGTATAGGGGACAATTTGAAGAAAGGTTGAAGGCAGTTTTGAAAGAAGTGGAAGATGCTGAAGGGAAGGTTATTGTTTTCATTGATGAAATTCATCTTGTTCTCGGTGCCGGTCGATGTCAAGGATCAATGGATGCTGCTAATCTTTTCAAACCTATGCTTGCTCGTGGACAACTTAGATGCATCGGTGCAACAACACTTGATGAATATAGGAAATATGTTGAAAAGGATGCAGCATTTGAAAGGAGGTTTCAACAGGTTCATGTTTCTGAACCTAGTGTGCCTGATACCATTAGTATTCTTCGTGGCCTAAAAGAGAAATACGAGGGTCATCATGGTGTCAGAATTCAAGACCGTGCAATTGTTGTTGCAGCTCAGATGTCTAGTCGGTACATAACTGGGCGTCGTCTTCCTGATAAGGCAATTGATTTAGTTGATGAGGCTTGTGCAAATGTTAGAGTTCAACTTGACAGTCAGCCAGAGGAAATTGACAACCTTGAAAGGAAGAGAATGCAACTGGAAGTGGAACTTCATGCTTTGGAGAAAGAGGAGGACAAAGCTAGCAAAGCTCGTCTTGTAGATGTGCGGAAAGAACTTGACAATTTAAGAGACAAGCTTCAACCTCTGAAGATGAAGTATAGCAAAGAGAAAGAGAGGATTGATGAGATTCGAAGTCTGAAACAGAAACGTGAAGAGCTCCTCTTTGCACTACAGGAGGCTGAGAGGCGGTATGATCTAGCCAGAGCTGCAGACCTACGATATGGTGCAATTGAAGAGGTGGAAAATGCAATAAAAAATCTTGAAGGTAGCACTGATGGGAACAAAGGTGAGAACTTGATGCTGACGGAAACTGTTGGACCAGATCAAATAGCTGAGGTTGTAAGCCGATGGACCGGTATACCAGTGACTCGTTTAGGCCAAAATGATAAAGAAAGGTTGGTTGGACTTGGTGACAGATTGCATAGTAGAGTTGTGGGACAAGACCAAGCAGTTAAAGCTGTCGCTGGGGCTGTAGTGAGATCGAGAGCTGGTCTAGGAAGACCACAACAACCAACTGGTTCCTTCCTATTCCTTGGTCCAACCGGTGTCGGTAAAACAGAACTTGCTAAGGCTCTTGCTCAACAACTCTTTGATAATGAAAATCAGATGGTTAGACTTGACATGTCGGAATACATGGAAAAATTCTCGGTATCAAGATTGATTGGTGCACCACCAGGGTATATTGGACATGACGAAGGTGGACAATTAACGGAAGCCGTAAGGAGAAGGCCTTACAGTCTAGTACTTTTTGATGAAGTTGAGAAGGCACACACATCTGTATTCAACACTCTGCTTCAAGTCTTAGATGACGGGAGATTAACCGATGGCCAAGGAAGAACTGTGGATTTTAGGAACACAGTCATTATCATGACTTCAAACCTTGGTGCCGAGCATCTCATAAGTGGACTTTCAGGAAATTGTACCATGCAAGTTGCTCGCGACCGAGTAATGCTGGAAGTAAAAAAGCATTTCAGGCCAGAATTGTTGAATAGGCTGGACGAAGTTGTTGTATTCGATCCTCTATCTCACGAGCAATTGATGAAGGTTGCAAGGTTGCAAATGAAGGATGTAGCTAGTCGTCTTGCTGAGAGAGGAATTGCATTGGCAGTTACTGATCCAGCACTAGATTATATACTTGCTGAAAGCTATGATCCTGTGTATGGTGCTAGACCAATTAGAAGGTGGCTTGAGAAGAATGTGGTGACAGAGCTATCTATGATGCTTATAAAGGAAGAAATTGATGAGAATACAACTGTATGCATTGATGCTGGTCCTAAGGGAAGTGAATTGTTATACCGTGTGGAAAAGAATGGAGGGATTGTCGATGCTGAAACTGGTGTGAAGTCAGATATTTTAATTCAGATACCAAATGGACCAAAAACTGACGATGAAAATGGATATGAGGTCATTGGCGATGATGAAATGGAAGAATAA

Protein sequence

>Msa1045200

MDPRKFTNKTNESFAVARKLAISSGHAQLTPVHLASTLISDLNGIFFQAISNVGGDESARSVERVLKQALKKYPTQQPPPQHVPESSSIIKVIERAQEAQKSRGDTHLAIDRLILGILEDSHIADLLTESGVAASRVKLEVENLRSKEGTKVESACSDNKFEALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVIIGEPGVGKTAVVEGLAKRIVRGDVPSNLADVRLFALDMGALVAGTQYRGQFEERLKAVLKEVEDAEGKVIVFIDEIHLVLGAGRCQGSMDAANLFKPMLARGQLRCIGATTLDEYRKYVEKDAAFERRFQQVHVSEPSVPDTISILRGLKEKYEGHHGVRIQDRAIVVAAQMSSRYITGRRLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEEDKASKARLVDVRKELDNLRDKLQPLKMKYSKEKERIDEIRSLKQKREELLFALQEAERRYDLARAADLRYGAIEEVENAIKNLEGSTDGNKGENLMLTETVGPDQIAEVVSRWTGIPVTRLGQNDKERLVGLGDRLHSRVVGQDQAVKAVAGAVVRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAQQLFDNENQMVRLDMSEYMEKFSVSRLIGAPPGYIGHDEGGQLTEAVRRRPYSLVLFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLISGLSGNCTMQVARDRVMLEVKKHFRPELLNRLDEVVVFDPLSHEQLMKVARLQMKDVASRLAERGIALAVTDPALDYILAESYDPVYGARPIRRWLEKNVVTELSMMLIKEEIDENTTVCIDAGPKGSELLYRVEKNGGIVDAETGVKSDILIQIPNGPKTDDENGYEVIGDDEMEE*