AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0392400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392400 MtrunA17_Chr3g0077591 97.810 137 3 0 249 385 1 137 6.40e-94 286
Msa0392400 MtrunA17_Chr4g0013971 84.354 147 23 0 239 385 48 194 9.12e-85 264
Msa0392400 MtrunA17_Chr2g0281891 55.714 280 106 6 108 385 16 279 6.51e-78 249
Msa0392400 MtrunA17_Chr3g0077601 86.755 151 10 2 1 143 1 149 8.30e-49 166
Msa0392400 MtrunA17_Chr1g0166661 28.947 152 101 3 217 368 515 659 3.27e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0392400 AT4G36690.2 64.174 321 99 8 80 388 27 343 3.90e-100 308
Msa0392400 AT4G36690.3 64.174 321 99 8 80 388 27 343 4.18e-100 308
Msa0392400 AT4G36690.1 64.174 321 99 8 80 388 27 343 1.32e-99 307
Msa0392400 AT4G36690.4 54.930 355 118 12 40 388 3 321 2.23e-98 303
Msa0392400 AT1G60900.1 78.307 189 37 2 199 385 170 356 6.79e-83 264
Msa0392400 AT2G33435.1 24.434 221 146 4 184 386 763 980 6.58e-15 77.4
Msa0392400 AT5G16780.3 40.833 120 68 2 51 169 28 145 6.93e-11 64.7
Msa0392400 AT5G16780.1 40.833 120 68 2 51 169 28 145 6.93e-11 64.7
Msa0392400 AT5G16780.2 40.833 120 68 2 51 169 28 145 6.93e-11 64.7

Find 213 sgRNAs with CRISPR-Local

Find 471 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAATATCTGCAGGTAATT+TGG 0.109716 3_2:+5530883 Msa0392400:intron
ATGCAGGGATTATTATATTT+TGG 0.152376 3_2:+5531694 Msa0392400:three_prime_UTR
AAAGAGAGAGACAGAGAAAA+TGG 0.193147 3_2:+5525294 Msa0392400:exon
GGAGAGAAAAGGAGAGAAAA+AGG 0.195497 3_2:+5526684 Msa0392400:CDS
AATGAGTTAAACACATAAAT+TGG 0.222018 3_2:-5531220 None:intergenic
ATCCAAAGCCATTGCATTGC+TGG 0.249411 3_2:-5529872 None:intergenic
GTAGGCAGGGGAAACATATT+TGG 0.249719 3_2:-5529098 None:intergenic
GGACTGAATGGAAGAAAATT+TGG 0.262626 3_2:+5531561 Msa0392400:three_prime_UTR
CGACAGGAATGCTCCAAATT+TGG 0.265569 3_2:+5530668 Msa0392400:three_prime_UTR
TATGATCTTCTTCTTGTTGT+TGG 0.275831 3_2:-5525351 None:intergenic
GGACTATCACCTGGCTCTGC+TGG 0.288932 3_2:+5530107 Msa0392400:three_prime_UTR
TGAGTTTCAGTAAAATAATA+AGG 0.289249 3_2:-5530170 None:intergenic
GGGTAGGTTGGCTTGGCCCT+AGG 0.312196 3_2:-5530062 None:intergenic
CTAATTGTGTTCTTGTTACT+TGG 0.313146 3_2:+5531647 Msa0392400:three_prime_UTR
TGACAAGAAGTTTGCCTTTG+TGG 0.314678 3_2:+5529828 Msa0392400:CDS
CTAGTGAAAGATAGAGAAAC+AGG 0.327721 3_2:+5530239 Msa0392400:three_prime_UTR
AACTTTCTTCAGTCAGGTTA+TGG 0.329007 3_2:+5529744 Msa0392400:CDS
GTCCAACTAAGCCCAGATTA+AGG 0.333587 3_2:-5530088 None:intergenic
GACTATCACCTGGCTCTGCT+GGG 0.339084 3_2:+5530108 Msa0392400:three_prime_UTR
GGAATGTCAGAAATTACTTA+TGG 0.339825 3_2:+5531367 Msa0392400:three_prime_UTR
GTACTTGCAGGTCAGATCTC+TGG 0.343612 3_2:+5529047 Msa0392400:intron
CTTATGGAAAATGATACTTA+TGG 0.347135 3_2:+5531383 Msa0392400:three_prime_UTR
GGGGCAAGTCCTGCTATTCC+TGG 0.350763 3_2:+5529068 Msa0392400:CDS
AACCTACCCAAACCTTAATC+TGG 0.350865 3_2:+5530076 Msa0392400:CDS
GGTTCTACCAAAGCCCGTTC+TGG 0.352285 3_2:+5531540 Msa0392400:three_prime_UTR
AGAGAAAAGGAGCGGGAGAA+TGG 0.360404 3_2:+5526662 Msa0392400:CDS
ATGCTCTCTTGTTCAGGTTT+AGG 0.362273 3_2:-5530401 None:intergenic
GCAGGGACAGGGTCAGAGAT+AGG 0.363846 3_2:+5526780 Msa0392400:CDS
TACTTGCAGGTCAGATCTCT+GGG 0.364212 3_2:+5529048 Msa0392400:intron
CTAAGCCCAGATTAAGGTTT+GGG 0.370397 3_2:-5530082 None:intergenic
GAGAAAAGGAGCGGGAGAAT+GGG 0.371959 3_2:+5526663 Msa0392400:CDS
TTGGGTGCTACTGGTGTTGC+AGG 0.372909 3_2:+5528332 Msa0392400:CDS
TGTTCAGGTTTAGGCTGCAT+TGG 0.376618 3_2:-5530392 None:intergenic
GATGTGACAACACACATAAT+TGG 0.379105 3_2:+5531247 Msa0392400:three_prime_UTR
GTTTGTCCTTCAGGAAATAA+TGG 0.379520 3_2:+5531052 Msa0392400:intron
TCTCCCTGTCTTGCCAGTTC+AGG 0.382609 3_2:+5529227 Msa0392400:CDS
AAAGGGATAAGGGAAGAGAC+AGG 0.384703 3_2:+5526702 Msa0392400:CDS
CCCTGAGCAAATTTGTTCTC+TGG 0.391081 3_2:-5531612 None:intergenic
ATTAAAATGCTCTCTTGTTC+AGG 0.391630 3_2:-5530407 None:intergenic
GTTCAGGTTTAGGCTGCATT+GGG 0.392860 3_2:-5530391 None:intergenic
AACATATTTGGAAACATTCC+AGG 0.392880 3_2:-5529086 None:intergenic
TTGGAGTATGCTGATGTTGA+TGG 0.396211 3_2:+5531519 Msa0392400:three_prime_UTR
AGCCAGCAATGCAATGGCTT+TGG 0.400570 3_2:+5529870 Msa0392400:CDS
TCAGAGATAGGGAGAGAAGC+AGG 0.402248 3_2:+5526792 Msa0392400:CDS
TGTTCTAATACAATAATACT+TGG 0.404534 3_2:+5531788 Msa0392400:three_prime_UTR
TCATCATCTTTGAGCTCATC+AGG 0.405363 3_2:-5530617 None:intergenic
GTTTCCCCTGCCTACAAATC+AGG 0.406555 3_2:+5529106 Msa0392400:CDS
AAGGTTTGGGTAGGTTGGCT+TGG 0.407315 3_2:-5530069 None:intergenic
ACAGAGAGAGTGAGAGAAGC+AGG 0.408072 3_2:+5526762 Msa0392400:CDS
CAAAATAAATAATGCAGCAT+TGG 0.410945 3_2:-5531329 None:intergenic
TCAACAGGTGGTGGTGGTGG+TGG 0.412949 3_2:-5525400 None:intergenic
TTTATTCAAGATTTATATGC+AGG 0.413958 3_2:+5531678 Msa0392400:three_prime_UTR
AGTCAGGTTATGGCTACAAT+TGG 0.415102 3_2:+5529754 Msa0392400:CDS
CCGTCTCTAGCTGCTGCCCT+AGG 0.416793 3_2:+5530045 Msa0392400:CDS
AGTTGCAACTTTCTTCAGTC+AGG 0.418446 3_2:+5529738 Msa0392400:CDS
AATAATGCAGCATTGGCAAT+AGG 0.420280 3_2:-5531322 None:intergenic
TCACCATCAGGCCGTGGGCG+AGG 0.421457 3_2:-5530920 None:intergenic
GGTAGGTTGGCTTGGCCCTA+GGG 0.421681 3_2:-5530061 None:intergenic
TCCAGAGAACAAATTTGCTC+AGG 0.424734 3_2:+5531611 Msa0392400:three_prime_UTR
ATAGGGAGAGAAGCAGGGAC+AGG 0.428035 3_2:+5526798 Msa0392400:CDS
TCTTCCATTCAGTCCAGAAC+GGG 0.431470 3_2:-5531553 None:intergenic
ACCTTTGTTGCCACCAATGC+TGG 0.434466 3_2:-5530569 None:intergenic
AACCTTAATCTGGGCTTAGT+TGG 0.436600 3_2:+5530086 Msa0392400:exon
GCGGGAGAATGGGAGAGAAA+AGG 0.437926 3_2:+5526673 Msa0392400:CDS
AGATTAAGGTTTGGGTAGGT+TGG 0.438682 3_2:-5530074 None:intergenic
ATAGGGATAGGGAGAAAAGC+AGG 0.441332 3_2:+5526738 Msa0392400:CDS
ACAGGGAACGCGATCGGGAT+GGG 0.441548 3_2:+5526846 Msa0392400:CDS
GTGAGATCTTCTTCATCAAC+AGG 0.443011 3_2:-5525415 None:intergenic
ATAGCCTGAACTGGCAAGAC+AGG 0.443744 3_2:-5529231 None:intergenic
ACTAAGCCCAGATTAAGGTT+TGG 0.445569 3_2:-5530083 None:intergenic
GTGAGAGAAAGGAAAGGGTA+AGG 0.445978 3_2:+5526930 Msa0392400:CDS
CAAAGACAGGGAACGCGATC+GGG 0.446135 3_2:+5526841 Msa0392400:CDS
AAAATACCTGATTTGTAGGC+AGG 0.446527 3_2:-5529112 None:intergenic
TGCATTGCTGGCTTCTTCAA+CGG 0.451937 3_2:-5529860 None:intergenic
TCATCAACAGGTGGTGGTGG+TGG 0.453350 3_2:-5525403 None:intergenic
AAGAGAGAGACAGAGAAAAT+GGG 0.457112 3_2:+5525295 Msa0392400:exon
ATTCAGTCCAGAACGGGCTT+TGG 0.457567 3_2:-5531547 None:intergenic
ATCCCTCGCCCACGGCCTGA+TGG 0.463255 3_2:+5530917 Msa0392400:three_prime_UTR
AAATACGTTGGATTTGGAAT+CGG 0.463999 3_2:-5525437 None:intergenic
ATAGAAGCAGGGATAGGGAT+AGG 0.464430 3_2:+5526726 Msa0392400:CDS
AGGGTGCACCAGTGAAGGTC+AGG 0.465241 3_2:+5530004 Msa0392400:intron
CAGGGAACGCGATCGGGATG+GGG 0.465625 3_2:+5526847 Msa0392400:CDS
AAGCAAACCTTTCCAACTCC+AGG 0.469840 3_2:-5530950 None:intergenic
CCTGATGGTGAACTGTGCCC+TGG 0.472461 3_2:+5530932 Msa0392400:three_prime_UTR
GCAAAGACAGGGAACGCGAT+CGG 0.473825 3_2:+5526840 Msa0392400:CDS
CACAGTTCACCATCAGGCCG+TGG 0.474395 3_2:-5530926 None:intergenic
TATTCCATTGAGAGCTGCAC+AGG 0.475165 3_2:-5530318 None:intergenic
AGAGTGAGAGAAGCAGGGAC+AGG 0.475476 3_2:+5526768 Msa0392400:CDS
ACGCGATCGGGATGGGGAGA+AGG 0.475708 3_2:+5526853 Msa0392400:CDS
CACCATCAGGCCGTGGGCGA+GGG 0.476970 3_2:-5530919 None:intergenic
ATCGGGATGGGGAGAAGGAA+AGG 0.478929 3_2:+5526858 Msa0392400:CDS
ATTGCCTGTGCAGCTCTCAA+TGG 0.480717 3_2:+5530314 Msa0392400:three_prime_UTR
ATCCTCCAGAAGTAGAGAAA+AGG 0.482000 3_2:+5526649 Msa0392400:CDS
GGAGGAAACACCGCTGGTCC+AGG 0.482975 3_2:+5529775 Msa0392400:CDS
ACAGGGATAGAAGCAGGGAT+AGG 0.486106 3_2:+5526720 Msa0392400:CDS
GAAGAGACAGGGATAGAAGC+AGG 0.487067 3_2:+5526714 Msa0392400:CDS
TCTTCATCAACAGGTGGTGG+TGG 0.488161 3_2:-5525406 None:intergenic
CCAGGGCACAGTTCACCATC+AGG 0.489395 3_2:-5530932 None:intergenic
GTAGGTCTCCTGACCTTCAC+TGG 0.489485 3_2:-5530012 None:intergenic
ATGGGGAGAAGGAAAGGGAG+AGG 0.489505 3_2:+5526864 Msa0392400:CDS
ATAAATTGGCATACTCGCTT+CGG 0.490907 3_2:-5531206 None:intergenic
TAGAAGCAGGGATAGGGATA+GGG 0.492088 3_2:+5526727 Msa0392400:CDS
ACAGCAGCAGATTGCTCTGC+AGG 0.492821 3_2:+5530436 Msa0392400:three_prime_UTR
CTCTATGATGGTCACGGTCA+CGG 0.497953 3_2:-5526889 None:intergenic
CACCCAATATCGCAGAAGTA+GGG 0.498077 3_2:-5528316 None:intergenic
ATAGTGAGAAAAGCAAAGAC+AGG 0.498726 3_2:+5526828 Msa0392400:CDS
GTTCTCGTTCACGCTCCAAA+AGG 0.501480 3_2:+5527298 Msa0392400:CDS
TCTGCGATATTGGGTGCTAC+TGG 0.502664 3_2:+5528323 Msa0392400:CDS
GGAAACATTCCAGGAATAGC+AGG 0.503610 3_2:-5529077 None:intergenic
ACCTACCCAAACCTTAATCT+GGG 0.507464 3_2:+5530077 Msa0392400:CDS
ATTAGAACAAATCCTCCATC+AGG 0.508317 3_2:-5531774 None:intergenic
TGTTGTGTCATAGCCTGAAC+TGG 0.509316 3_2:-5529240 None:intergenic
CAGGGACAGGGTCAGAGATA+GGG 0.509318 3_2:+5526781 Msa0392400:CDS
CAGGTTATGGCTACAATTGG+AGG 0.509339 3_2:+5529757 Msa0392400:CDS
TAGGGAGAGAAGCAGGGACA+GGG 0.509753 3_2:+5526799 Msa0392400:CDS
CAGGGATCGTAGTGAGAGAA+AGG 0.516139 3_2:+5526919 Msa0392400:CDS
CAGGGATAGAAGCAGGGATA+GGG 0.516826 3_2:+5526721 Msa0392400:CDS
AGTTTGCCTTTGTGGAAATG+AGG 0.516873 3_2:+5529836 Msa0392400:CDS
GCACCCAATATCGCAGAAGT+AGG 0.517661 3_2:-5528317 None:intergenic
TCGGGATGGGGAGAAGGAAA+GGG 0.521356 3_2:+5526859 Msa0392400:CDS
TTTGCTCAGGGCGATTATGA+AGG 0.523159 3_2:+5531624 Msa0392400:three_prime_UTR
GGCTTAGTTGGACTATCACC+TGG 0.524073 3_2:+5530098 Msa0392400:exon
TATGTTACAACCAGCATTGG+TGG 0.524223 3_2:+5530559 Msa0392400:three_prime_UTR
CTCTCCTACAGCTAATGAGC+AGG 0.525438 3_2:+5529409 Msa0392400:CDS
AGTTCAGGCTATGACACAAC+AGG 0.528917 3_2:+5529242 Msa0392400:CDS
GGTGAACTGTGCCCTGGAGT+TGG 0.530525 3_2:+5530938 Msa0392400:three_prime_UTR
GGATTTCTAATGAATTATTG+TGG 0.530896 3_2:+5531715 Msa0392400:three_prime_UTR
AAAGCCCGTTCTGGACTGAA+TGG 0.531994 3_2:+5531549 Msa0392400:three_prime_UTR
ATGATCGAGAGGATAGGCAT+AGG 0.534779 3_2:+5527211 Msa0392400:CDS
GATTCTTGATGATATGCGAC+AGG 0.535785 3_2:+5530652 Msa0392400:three_prime_UTR
AGAGAAACAGGGAATTCAAA+GGG 0.536945 3_2:+5530251 Msa0392400:three_prime_UTR
TCGTAGTGAGAGAAAGGAAA+GGG 0.539193 3_2:+5526925 Msa0392400:CDS
ACTTATGTTACAACCAGCAT+TGG 0.539237 3_2:+5530556 Msa0392400:three_prime_UTR
AATTCAGGGTGCACCAGTGA+AGG 0.539964 3_2:+5529999 Msa0392400:intron
CGTCTCTAGCTGCTGCCCTA+GGG 0.541292 3_2:+5530046 Msa0392400:CDS
GACAGGGAACGCGATCGGGA+TGG 0.543148 3_2:+5526845 Msa0392400:CDS
CCCTGTGGCGATCTCTATGA+TGG 0.547978 3_2:-5526901 None:intergenic
AGGGAGAGAAGCAGGGACAG+GGG 0.548129 3_2:+5526800 Msa0392400:CDS
ACTATCACCTGGCTCTGCTG+GGG 0.549414 3_2:+5530109 Msa0392400:three_prime_UTR
CTCGATCTAGATCAAGGTCA+AGG 0.550814 3_2:+5527247 Msa0392400:CDS
GGGGACTTGATGGTCCTGAT+CGG 0.551785 3_2:+5530129 Msa0392400:three_prime_UTR
CAGAAGTAGAGAAAAGGAGC+GGG 0.551899 3_2:+5526655 Msa0392400:CDS
CTATCACCTGGCTCTGCTGG+GGG 0.554838 3_2:+5530110 Msa0392400:three_prime_UTR
AAATACCTGATTTGTAGGCA+GGG 0.555176 3_2:-5529111 None:intergenic
TGAGAGAAAGGAAAGGGTAA+GGG 0.556831 3_2:+5526931 Msa0392400:CDS
CAAAGGCAAACTTCTTGTCA+TGG 0.559361 3_2:-5529825 None:intergenic
ACATTCACAACTGCATCACC+TGG 0.561956 3_2:-5529793 None:intergenic
GGCTACACGACATGCTAGAC+GGG 0.562074 3_2:+5529370 Msa0392400:intron
TTCTTCCATTCAGTCCAGAA+CGG 0.564603 3_2:-5531554 None:intergenic
TGGGGAGAAGGAAAGGGAGA+GGG 0.564967 3_2:+5526865 Msa0392400:CDS
TAGAGAAACAGGGAATTCAA+AGG 0.566427 3_2:+5530250 Msa0392400:three_prime_UTR
TGTTTGTTGGTATAGACGAA+GGG 0.568551 3_2:+5527185 Msa0392400:intron
AGCAATGCAATGGCTTTGGA+TGG 0.568787 3_2:+5529874 Msa0392400:CDS
ACAGAAGCCGAGGCTATGAC+AGG 0.570049 3_2:+5526975 Msa0392400:CDS
GCCGGTCTCGATCTAGATCA+AGG 0.570517 3_2:+5527241 Msa0392400:CDS
ACCAGCATTGGTGGCAACAA+AGG 0.576598 3_2:+5530568 Msa0392400:three_prime_UTR
AAGACAGGGAGAGCACTAAA+CGG 0.578187 3_2:-5529216 None:intergenic
TGATGAGCTCAAAGATGATG+AGG 0.579099 3_2:+5530619 Msa0392400:three_prime_UTR
AATACCTGATTTGTAGGCAG+GGG 0.580602 3_2:-5529110 None:intergenic
ATGTGGTGATCCCTCGCCCA+CGG 0.581857 3_2:+5530909 Msa0392400:three_prime_UTR
CTGAATGGAAGAAAATTTGG+TGG 0.582325 3_2:+5531564 Msa0392400:three_prime_UTR
CCAGAGAACAAATTTGCTCA+GGG 0.582597 3_2:+5531612 Msa0392400:three_prime_UTR
TGCAGGTAATTTGGTTAATG+TGG 0.583315 3_2:+5530892 Msa0392400:intron
ACCTTGATCTAGATCGAGAC+CGG 0.584536 3_2:-5527242 None:intergenic
GAGTGAGAGAAGCAGGGACA+GGG 0.585097 3_2:+5526769 Msa0392400:CDS
CGATTATATATAATAAATTG+TGG 0.585867 3_2:+5531462 Msa0392400:three_prime_UTR
TCTTCTTCATCAACAGGTGG+TGG 0.585996 3_2:-5525409 None:intergenic
GGGAGTATGATCGAGAGGAT+AGG 0.586837 3_2:+5527205 Msa0392400:CDS
GGCGATCTCTATGATGGTCA+CGG 0.587032 3_2:-5526895 None:intergenic
TGCAGCATTGGCAATAGGAA+AGG 0.587206 3_2:-5531317 None:intergenic
TTATTCAAGATTTATATGCA+GGG 0.587387 3_2:+5531679 Msa0392400:three_prime_UTR
ATCGTAGTGAGAGAAAGGAA+AGG 0.592512 3_2:+5526924 Msa0392400:CDS
CCTAGGGCAGCAGCTAGAGA+CGG 0.592863 3_2:-5530045 None:intergenic
ACCATCATAGAGATCGCCAC+AGG 0.594034 3_2:+5526900 Msa0392400:CDS
CTCGATCTGAGCATAGATCA+AGG 0.594382 3_2:+5527271 Msa0392400:CDS
AACTGCATCACCTGGACCAG+CGG 0.595274 3_2:-5529785 None:intergenic
TGAAGAAGCCAGCAATGCAA+TGG 0.598626 3_2:+5529864 Msa0392400:CDS
AAGGGATAAGGGAAGAGACA+GGG 0.599153 3_2:+5526703 Msa0392400:CDS
ACTTACAGCAAAAGGACTAG+TGG 0.602947 3_2:+5528278 Msa0392400:intron
ATTACCTGCTCATTAGCTGT+AGG 0.603989 3_2:-5529413 None:intergenic
GCTAGACGGGTGTATGTTGG+TGG 0.606173 3_2:+5529383 Msa0392400:CDS
ACCCAATATCGCAGAAGTAG+GGG 0.606263 3_2:-5528315 None:intergenic
CAGAGATAGGGAGAGAAGCA+GGG 0.607054 3_2:+5526793 Msa0392400:CDS
ACAGTTCACCATCAGGCCGT+GGG 0.609862 3_2:-5530925 None:intergenic
GCCCAGATTAAGGTTTGGGT+AGG 0.610361 3_2:-5530078 None:intergenic
AGGCTACACGACATGCTAGA+CGG 0.614733 3_2:+5529369 Msa0392400:intron
ACAATTGGAGGAAACACCGC+TGG 0.618666 3_2:+5529769 Msa0392400:CDS
AGCAAACCTTTCCAACTCCA+GGG 0.618687 3_2:-5530949 None:intergenic
CCCAATATCGCAGAAGTAGG+GGG 0.619164 3_2:-5528314 None:intergenic
GAGAGGATAGGCATAGGAGT+AGG 0.619167 3_2:+5527217 Msa0392400:CDS
TCAGCTGGAATAGCACCTGA+TGG 0.621294 3_2:+5531759 Msa0392400:three_prime_UTR
CAGAGAGAGTGAGAGAAGCA+GGG 0.625664 3_2:+5526763 Msa0392400:CDS
ACTGTGCCCTGGAGTTGGAA+AGG 0.629409 3_2:+5530943 Msa0392400:three_prime_UTR
CATGCTAGACGGGTGTATGT+TGG 0.630630 3_2:+5529380 Msa0392400:CDS
AAGAGACAGGGATAGAAGCA+GGG 0.631073 3_2:+5526715 Msa0392400:CDS
GCTCATTAGCTGTAGGAGAG+AGG 0.632892 3_2:-5529406 None:intergenic
TCGATCTAGATCAAGGTCAA+GGG 0.634343 3_2:+5527248 Msa0392400:CDS
TAGGGATAGGGAGAAAAGCA+GGG 0.634757 3_2:+5526739 Msa0392400:CDS
GCTGGAATAGCACCTGATGG+AGG 0.636746 3_2:+5531762 Msa0392400:three_prime_UTR
ACGAAGGGAGTATGATCGAG+AGG 0.637703 3_2:+5527200 Msa0392400:CDS
TAGCCTGAACTGGCAAGACA+GGG 0.642494 3_2:-5529230 None:intergenic
TAGTGAGAAAAGCAAAGACA+GGG 0.650122 3_2:+5526829 Msa0392400:CDS
ACTAGATCAAAACCCCGAAG+AGG 0.652640 3_2:-5530221 None:intergenic
AACGGACCTCATTTCCACAA+AGG 0.654413 3_2:-5529842 None:intergenic
GATGATTATCACAGAAGCCG+AGG 0.655256 3_2:+5526965 Msa0392400:CDS
CCAGAAGTAGAGAAAAGGAG+CGG 0.658550 3_2:+5526654 Msa0392400:CDS
AGATCTTCTTCATCAACAGG+TGG 0.670030 3_2:-5525412 None:intergenic
AGAGACGGATTATAATCAGT+AGG 0.689160 3_2:-5530030 None:intergenic
TTCTCTCACTACGATCCCTG+TGG 0.694836 3_2:-5526916 None:intergenic
CCATCATAGAGATCGCCACA+GGG 0.695430 3_2:+5526901 Msa0392400:CDS
ATAGGCATAGGAGTAGGCGC+CGG 0.701001 3_2:+5527223 Msa0392400:CDS
TAGTGAAAGATAGAGAAACA+GGG 0.705460 3_2:+5530240 Msa0392400:three_prime_UTR
ACTTGCAGGTCAGATCTCTG+GGG 0.748107 3_2:+5529049 Msa0392400:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAAATTCAATTATAA+CGG + chr3_2:5525522-5525541 Msa0392400:intron 10.0%
!!! GATTAAAATTTTGAAATTTT+AGG - chr3_2:5525707-5525726 None:intergenic 10.0%
!!! ATTTTAAGATTTTTCATTTT+AGG + chr3_2:5526028-5526047 Msa0392400:intron 10.0%
!! GTTAGATAATAAATAAATAT+TGG - chr3_2:5527163-5527182 None:intergenic 10.0%
!!! TATTTTGAAAAGAAAAAAAA+TGG + chr3_2:5531345-5531364 Msa0392400:three_prime_UTR 10.0%
!!! ATTTTGAAAAGAAAAAAAAT+GGG + chr3_2:5531346-5531365 Msa0392400:three_prime_UTR 10.0%
!!! ATGAATATTTTTTTTGTTTT+TGG + chr3_2:5531433-5531452 Msa0392400:three_prime_UTR 10.0%
!!! TGAATATTTTTTTTGTTTTT+GGG + chr3_2:5531434-5531453 Msa0392400:three_prime_UTR 10.0%
!! TGATTGAAATTGAAAAATAA+AGG - chr3_2:5525479-5525498 None:intergenic 15.0%
!!! TTTTTCAATTTCAATCAATT+AGG + chr3_2:5525482-5525501 Msa0392400:intron 15.0%
!!! TTTTCAATTTCAATCAATTA+GGG + chr3_2:5525483-5525502 Msa0392400:intron 15.0%
!! ATTCAATTGTATGATTATTT+AGG + chr3_2:5525593-5525612 Msa0392400:intron 15.0%
!! TTCAATTGTATGATTATTTA+GGG + chr3_2:5525594-5525613 Msa0392400:intron 15.0%
!! AATTGTATGATTGATTAATT+AGG + chr3_2:5525631-5525650 Msa0392400:intron 15.0%
!! ATTGTATGATTGATTAATTA+GGG + chr3_2:5525632-5525651 Msa0392400:intron 15.0%
!!! TATTAAAGTTTTGCAATTTT+AGG + chr3_2:5525815-5525834 Msa0392400:intron 15.0%
!! TTCAAAATTTCTTATGTAAA+GGG - chr3_2:5526381-5526400 None:intergenic 15.0%
!! ATTCAAAATTTCTTATGTAA+AGG - chr3_2:5526382-5526401 None:intergenic 15.0%
!! TAAGAAGAAAAAAAAACAAT+AGG - chr3_2:5526470-5526489 None:intergenic 15.0%
!!! TTAATGTTTTGTTTGTTTTT+TGG + chr3_2:5526591-5526610 Msa0392400:intron 15.0%
!! TGAATAGAAATTATAACAAT+TGG - chr3_2:5527127-5527146 None:intergenic 15.0%
!!! TCCATAAGATTTTTTTATTT+AGG + chr3_2:5527336-5527355 Msa0392400:intron 15.0%
!! ACCTAAATAAAAAAATCTTA+TGG - chr3_2:5527340-5527359 None:intergenic 15.0%
!! ATAAATATACATTCAACTAT+TGG + chr3_2:5527738-5527757 Msa0392400:intron 15.0%
!!! TAATTTAACCTTTTAATGTA+AGG + chr3_2:5528015-5528034 Msa0392400:intron 15.0%
!!! ATTTGAAATAATGAATATAC+AGG - chr3_2:5528085-5528104 None:intergenic 15.0%
!! TTCATTATTTCAAATTTCAT+AGG + chr3_2:5528090-5528109 Msa0392400:intron 15.0%
!! AAAATTCATATCAAATTACA+TGG + chr3_2:5528445-5528464 Msa0392400:intron 15.0%
!!! TGTAATTTCATTTTTAATTC+AGG + chr3_2:5529984-5530003 Msa0392400:intron 15.0%
!!! GTAATTTCATTTTTAATTCA+GGG + chr3_2:5529985-5530004 Msa0392400:intron 15.0%
!! CGATTATATATAATAAATTG+TGG + chr3_2:5531462-5531481 Msa0392400:three_prime_UTR 15.0%
!! GAAATTGAAAAATAAAGGAA+CGG - chr3_2:5525474-5525493 None:intergenic 20.0%
!! TCAATTGTATGATTATTTAG+GGG + chr3_2:5525595-5525614 Msa0392400:intron 20.0%
!!! TTTAGAATATTGATAACCTA+AGG + chr3_2:5525843-5525862 Msa0392400:intron 20.0%
!! TCATATAACTTTACAATTTC+TGG + chr3_2:5525867-5525886 Msa0392400:intron 20.0%
!! CCAAAATTTCTATTTGAAAA+GGG - chr3_2:5526103-5526122 None:intergenic 20.0%
!! ACCAAAATTTCTATTTGAAA+AGG - chr3_2:5526104-5526123 None:intergenic 20.0%
!! TATCACAATTGTTTCAATTT+CGG + chr3_2:5526130-5526149 Msa0392400:intron 20.0%
!!! TTCATTAAAATCGAACTTTT+TGG - chr3_2:5526312-5526331 None:intergenic 20.0%
!!! TTATTTTTGTTAGTGAATAG+AGG + chr3_2:5526337-5526356 Msa0392400:intron 20.0%
!!! TATTTTTGTTAGTGAATAGA+GGG + chr3_2:5526338-5526357 Msa0392400:intron 20.0%
!!! TGATGATGCATATAAAATTT+AGG - chr3_2:5526529-5526548 None:intergenic 20.0%
!! TATTATCTAACATTGTTTGT+TGG + chr3_2:5527172-5527191 Msa0392400:intron 20.0%
!!! AGAACTTGAAATTTTACAAA+TGG - chr3_2:5527396-5527415 None:intergenic 20.0%
!! ACACTGTTCATTATAAAATT+TGG + chr3_2:5527944-5527963 Msa0392400:intron 20.0%
!! GTAATATTCCTTACATTAAA+AGG - chr3_2:5528026-5528045 None:intergenic 20.0%
!! ATTATTTCAAATTTCATAGG+TGG + chr3_2:5528093-5528112 Msa0392400:intron 20.0%
!! ATCCAACACAAATAAAAAAT+GGG - chr3_2:5528165-5528184 None:intergenic 20.0%
!! AAAATTATAATATAGCAGTG+AGG + chr3_2:5528895-5528914 Msa0392400:intron 20.0%
!!! CATTTTTGTTTGTCTTTTTA+AGG + chr3_2:5529188-5529207 Msa0392400:intron 20.0%
!! TGAGTTTCAGTAAAATAATA+AGG - chr3_2:5530173-5530192 None:intergenic 20.0%
!! AACACAAAAATTACCAAATT+TGG - chr3_2:5530684-5530703 None:intergenic 20.0%
!! TAAAAGACTGAAAATTATGA+AGG - chr3_2:5530806-5530825 None:intergenic 20.0%
!! TAGAGAATTTCCAAAATAAT+AGG - chr3_2:5530982-5531001 None:intergenic 20.0%
!! AATGAGTTAAACACATAAAT+TGG - chr3_2:5531223-5531242 None:intergenic 20.0%
!! TTTATTCAAGATTTATATGC+AGG + chr3_2:5531678-5531697 Msa0392400:three_prime_UTR 20.0%
!! TTATTCAAGATTTATATGCA+GGG + chr3_2:5531679-5531698 Msa0392400:three_prime_UTR 20.0%
!! TGTTCTAATACAATAATACT+TGG + chr3_2:5531788-5531807 Msa0392400:three_prime_UTR 20.0%
! TTTAATCAAATTTGACCCTT+TGG + chr3_2:5525720-5525739 Msa0392400:intron 25.0%
! TTAATCAAATTTGACCCTTT+GGG + chr3_2:5525721-5525740 Msa0392400:intron 25.0%
!!! TGCATTAAGTTGGTATTATT+AGG + chr3_2:5525764-5525783 Msa0392400:intron 25.0%
!!! GCATTAAGTTGGTATTATTA+GGG + chr3_2:5525765-5525784 Msa0392400:intron 25.0%
! TGTAAAGTTATATGAACCTT+AGG - chr3_2:5525862-5525881 None:intergenic 25.0%
!!! ACTTTACAATTTCTGGTAAT+TGG + chr3_2:5525874-5525893 Msa0392400:intron 25.0%
!!! CTTTACAATTTCTGGTAATT+GGG + chr3_2:5525875-5525894 Msa0392400:intron 25.0%
!! CCCTTTTCAAATAGAAATTT+TGG + chr3_2:5526100-5526119 Msa0392400:intron 25.0%
!!! AGAGAAAAAATGTCACTTTT+GGG - chr3_2:5526192-5526211 None:intergenic 25.0%
!!! TAGAGAAAAAATGTCACTTT+TGG - chr3_2:5526193-5526212 None:intergenic 25.0%
! AGCAAAAAAATATCACTTGT+GGG + chr3_2:5526225-5526244 Msa0392400:intron 25.0%
!!! AAAGTTCGATTTTAATGAAG+AGG + chr3_2:5526313-5526332 Msa0392400:intron 25.0%
!! AGAAATTTTGAATTGCTAGA+TGG + chr3_2:5526389-5526408 Msa0392400:intron 25.0%
! TATCATCAAATTGGAAGATA+TGG + chr3_2:5526553-5526572 Msa0392400:intron 25.0%
! ATCATCAAATTGGAAGATAT+GGG + chr3_2:5526554-5526573 Msa0392400:intron 25.0%
!!! GTAAAAGTTATTTTCTGGTT+TGG + chr3_2:5526997-5527016 Msa0392400:intron 25.0%
! AAAATCTTATGGATCTTTCT+GGG - chr3_2:5527329-5527348 None:intergenic 25.0%
! AAAAATCTTATGGATCTTTC+TGG - chr3_2:5527330-5527349 None:intergenic 25.0%
! TTCGTTCAACAAATAGTTAA+AGG + chr3_2:5527418-5527437 Msa0392400:intron 25.0%
! ACATGAGAACTGTAATAAAA+TGG - chr3_2:5527520-5527539 None:intergenic 25.0%
!! ATATCCTTGATAATTTGATC+TGG + chr3_2:5527543-5527562 Msa0392400:intron 25.0%
!! TTATAAAATTTGGAACTCCA+TGG + chr3_2:5527954-5527973 Msa0392400:intron 25.0%
!! GAAGTATCTCTTAAAACTAA+AGG + chr3_2:5527982-5528001 Msa0392400:intron 25.0%
! TTATCAGTTGTTCATACTTT+AGG - chr3_2:5528059-5528078 None:intergenic 25.0%
! TAAAGTATGAACAACTGATA+AGG + chr3_2:5528058-5528077 Msa0392400:intron 25.0%
! AAAGTATGAACAACTGATAA+GGG + chr3_2:5528059-5528078 Msa0392400:intron 25.0%
! CATCCAACACAAATAAAAAA+TGG - chr3_2:5528166-5528185 None:intergenic 25.0%
! AAAAAAGGGGGAAAAAAAAA+AGG - chr3_2:5528403-5528422 None:intergenic 25.0%
!! TGATATGAATTTTCCATACT+AGG - chr3_2:5528438-5528457 None:intergenic 25.0%
! TTTACTTAGTGATACAATTC+TGG + chr3_2:5528563-5528582 Msa0392400:intron 25.0%
! ATAGAATTGCAAAAGATGAA+AGG + chr3_2:5528978-5528997 Msa0392400:intron 25.0%
!! AAGAAAAATACCTGATTTGT+AGG - chr3_2:5529119-5529138 None:intergenic 25.0%
! TGTTTGGTACATCAAAAAAA+GGG - chr3_2:5529346-5529365 None:intergenic 25.0%
! ATGTTTGGTACATCAAAAAA+AGG - chr3_2:5529347-5529366 None:intergenic 25.0%
!! CTTCAACATTTTATGAAACA+TGG - chr3_2:5529537-5529556 None:intergenic 25.0%
!!! TTTGGATGGAATTATTTTTG+AGG + chr3_2:5529888-5529907 Msa0392400:CDS 25.0%
!!! TATCTTTTGACTATAACTGA+TGG + chr3_2:5529911-5529930 Msa0392400:intron 25.0%
! ACTCATGCACAAAAAATTTA+AGG - chr3_2:5530496-5530515 None:intergenic 25.0%
! TTTATTTACACAATATCTGC+AGG + chr3_2:5530875-5530894 Msa0392400:intron 25.0%
!!! GCTTTTTTGACCTATTATTT+TGG + chr3_2:5530969-5530988 Msa0392400:intron 25.0%
! CAAAATAAATAATGCAGCAT+TGG - chr3_2:5531332-5531351 None:intergenic 25.0%
! CTTATGGAAAATGATACTTA+TGG + chr3_2:5531383-5531402 Msa0392400:three_prime_UTR 25.0%
!!! TTCTTTTTTGCAGGTATTTT+TGG + chr3_2:5531500-5531519 Msa0392400:three_prime_UTR 25.0%
!! ATGCAGGGATTATTATATTT+TGG + chr3_2:5531694-5531713 Msa0392400:three_prime_UTR 25.0%
! GGATTTCTAATGAATTATTG+TGG + chr3_2:5531715-5531734 Msa0392400:three_prime_UTR 25.0%
!!! ACATAAATGTTTTATTCAGC+TGG + chr3_2:5531744-5531763 Msa0392400:three_prime_UTR 25.0%
! TATGATCTTCTTCTTGTTGT+TGG - chr3_2:5525354-5525373 None:intergenic 30.0%
! AAATACGTTGGATTTGGAAT+CGG - chr3_2:5525440-5525459 None:intergenic 30.0%
TAGGAAAAATACGTTGGATT+TGG - chr3_2:5525446-5525465 None:intergenic 30.0%
GTGAATTAGGAAAAATACGT+TGG - chr3_2:5525452-5525471 None:intergenic 30.0%
AAATAAAGGAACGGTGAATT+AGG - chr3_2:5525465-5525484 None:intergenic 30.0%
GGGTAAATACTTGAATTGAT+CGG + chr3_2:5525652-5525671 Msa0392400:intron 30.0%
TAATCAAATTTGACCCTTTG+GGG + chr3_2:5525722-5525741 Msa0392400:intron 30.0%
TTGAGAAAAAAACGATGAAG+AGG - chr3_2:5525946-5525965 None:intergenic 30.0%
!!! GAGAAAAAATGTCACTTTTG+GGG - chr3_2:5526191-5526210 None:intergenic 30.0%
GAGCAAAAAAATATCACTTG+TGG + chr3_2:5526224-5526243 Msa0392400:intron 30.0%
GCAAAAAAATATCACTTGTG+GGG + chr3_2:5526226-5526245 Msa0392400:intron 30.0%
CATCACTGTTATCATCAAAT+TGG + chr3_2:5526544-5526563 Msa0392400:intron 30.0%
!! GACAGGTAAAAGTTATTTTC+TGG + chr3_2:5526992-5527011 Msa0392400:intron 30.0%
TCATCTATTGATCTTATGTG+AGG + chr3_2:5527055-5527074 Msa0392400:intron 30.0%
TAACATATAATGCATGTGCT+GGG + chr3_2:5527366-5527385 Msa0392400:intron 30.0%
TTGACCAGATCAAATTATCA+AGG - chr3_2:5527550-5527569 None:intergenic 30.0%
! CAACGTAACTAATTTAGAGT+GGG - chr3_2:5527684-5527703 None:intergenic 30.0%
TCAACGTAACTAATTTAGAG+TGG - chr3_2:5527685-5527704 None:intergenic 30.0%
ATTTCAAATTTCATAGGTGG+TGG + chr3_2:5528096-5528115 Msa0392400:intron 30.0%
CAACACAAATAAAAAATGGG+TGG - chr3_2:5528162-5528181 None:intergenic 30.0%
!!! CACCCATTTTTTATTTGTGT+TGG + chr3_2:5528160-5528179 Msa0392400:intron 30.0%
TATTTGTGTTGGATGCTATT+AGG + chr3_2:5528171-5528190 Msa0392400:intron 30.0%
TTTGATCTACTTACAGCAAA+AGG + chr3_2:5528270-5528289 Msa0392400:intron 30.0%
!!! TTTTTTTCCCCCTTTTTTGT+TGG + chr3_2:5528405-5528424 Msa0392400:intron 30.0%
AGATAAGTTTCAGTTACTAC+TGG + chr3_2:5528488-5528507 Msa0392400:intron 30.0%
GATAAGTTTCAGTTACTACT+GGG + chr3_2:5528489-5528508 Msa0392400:intron 30.0%
AAGACAAAATTACACACCAA+GGG - chr3_2:5528539-5528558 None:intergenic 30.0%
AAAGACAAAATTACACACCA+AGG - chr3_2:5528540-5528559 None:intergenic 30.0%
!! GATACAATTCTGGAACTAAA+TGG + chr3_2:5528573-5528592 Msa0392400:intron 30.0%
!!! TTGGTTTTTTGTCTTGTGTT+TGG + chr3_2:5528600-5528619 Msa0392400:intron 30.0%
ATTGCAAAAGATGAAAGGTA+TGG + chr3_2:5528983-5529002 Msa0392400:intron 30.0%
! TTGCAAAAGATGAAAGGTAT+GGG + chr3_2:5528984-5529003 Msa0392400:intron 30.0%
AACATATTTGGAAACATTCC+AGG - chr3_2:5529089-5529108 None:intergenic 30.0%
! TTTCTTTTTGTTCCCAATTC+TGG + chr3_2:5529133-5529152 Msa0392400:intron 30.0%
TAGGGAAATCAATGCTAAAA+GGG - chr3_2:5529316-5529335 None:intergenic 30.0%
TTAGGGAAATCAATGCTAAA+AGG - chr3_2:5529317-5529336 None:intergenic 30.0%
CAAAAAAAGGGACAAAGTTA+GGG - chr3_2:5529334-5529353 None:intergenic 30.0%
TCAAAAAAAGGGACAAAGTT+AGG - chr3_2:5529335-5529354 None:intergenic 30.0%
! TTTTGATGTACCAAACATGT+AGG + chr3_2:5529349-5529368 Msa0392400:intron 30.0%
TCAAAATGATCTTTCCATGT+TGG + chr3_2:5529446-5529465 Msa0392400:intron 30.0%
GACAAATAGGCAATTTAGAA+GGG - chr3_2:5529505-5529524 None:intergenic 30.0%
TGACAAATAGGCAATTTAGA+AGG - chr3_2:5529506-5529525 None:intergenic 30.0%
ATGGAAACTACATGACAAAT+AGG - chr3_2:5529518-5529537 None:intergenic 30.0%
! GATTCTTGTGATTTGAGTTT+AGG + chr3_2:5529601-5529620 Msa0392400:intron 30.0%
! TTTGAGTTTAGGAAGCAATT+AGG + chr3_2:5529612-5529631 Msa0392400:intron 30.0%
!!! AGTTTTGTTTGTGCTACTTT+TGG + chr3_2:5529677-5529696 Msa0392400:intron 30.0%
TAGTGAAAGATAGAGAAACA+GGG + chr3_2:5530240-5530259 Msa0392400:three_prime_UTR 30.0%
AGCTCTCAATGGAATAAAAA+TGG + chr3_2:5530325-5530344 Msa0392400:three_prime_UTR 30.0%
GCTCTCAATGGAATAAAAAT+GGG + chr3_2:5530326-5530345 Msa0392400:three_prime_UTR 30.0%
ATTAAAATGCTCTCTTGTTC+AGG - chr3_2:5530410-5530429 None:intergenic 30.0%
!! GTATGGTGGGATTATTATTT+TGG + chr3_2:5530458-5530477 Msa0392400:intron 30.0%
GGAGAATGTAAGATTACAAA+AGG - chr3_2:5530749-5530768 None:intergenic 30.0%
GGAATGTCAGAAATTACTTA+TGG + chr3_2:5531367-5531386 Msa0392400:three_prime_UTR 30.0%
ATACCTGCAAAAAAGAAAAC+AGG - chr3_2:5531497-5531516 None:intergenic 30.0%
CTAATTGTGTTCTTGTTACT+TGG + chr3_2:5531647-5531666 Msa0392400:three_prime_UTR 30.0%
AAAGAGAGAGACAGAGAAAA+TGG + chr3_2:5525294-5525313 Msa0392400:exon 35.0%
AAGAGAGAGACAGAGAAAAT+GGG + chr3_2:5525295-5525314 Msa0392400:exon 35.0%
ACGGCAAATTAGATATGTGT+TGG + chr3_2:5525541-5525560 Msa0392400:intron 35.0%
GCACCAAATGTGATATTTGA+AGG + chr3_2:5526285-5526304 Msa0392400:intron 35.0%
GGTCCTTCAAATATCACATT+TGG - chr3_2:5526291-5526310 None:intergenic 35.0%
TTTGAATTGCTAGATGGTTG+TGG + chr3_2:5526395-5526414 Msa0392400:intron 35.0%
! CTTTTACGTGCAATGTGATA+TGG + chr3_2:5526424-5526443 Msa0392400:intron 35.0%
!!! TTGTTTGTTTTTTGGCAGCA+TGG + chr3_2:5526599-5526618 Msa0392400:intron 35.0%
GAGAGAAAAGGAGAGAAAAA+GGG + chr3_2:5526685-5526704 Msa0392400:CDS 35.0%
AAAGGAGAGAAAAAGGGATA+AGG + chr3_2:5526691-5526710 Msa0392400:CDS 35.0%
AAGGAGAGAAAAAGGGATAA+GGG + chr3_2:5526692-5526711 Msa0392400:CDS 35.0%
ATAGTGAGAAAAGCAAAGAC+AGG + chr3_2:5526828-5526847 Msa0392400:CDS 35.0%
TAGTGAGAAAAGCAAAGACA+GGG + chr3_2:5526829-5526848 Msa0392400:CDS 35.0%
! TTGTTTGTTGGTATAGACGA+AGG + chr3_2:5527184-5527203 Msa0392400:intron 35.0%
! TGTTTGTTGGTATAGACGAA+GGG + chr3_2:5527185-5527204 Msa0392400:intron 35.0%
CTAACATATAATGCATGTGC+TGG + chr3_2:5527365-5527384 Msa0392400:intron 35.0%
TAATGTTGTGTGAATGCATG+TGG + chr3_2:5527462-5527481 Msa0392400:intron 35.0%
TTGAGTCTTAACAGTGCTAT+TGG + chr3_2:5527793-5527812 Msa0392400:intron 35.0%
ACACATACCAAGTTCTCAAA+AGG - chr3_2:5527819-5527838 None:intergenic 35.0%
GTTCGAAGAACATTTACTGT+CGG - chr3_2:5527857-5527876 None:intergenic 35.0%
CAAACATACTCAACACACAT+TGG - chr3_2:5527905-5527924 None:intergenic 35.0%
CAATGTGTGTTGAGTATGTT+TGG + chr3_2:5527903-5527922 Msa0392400:intron 35.0%
!!! AAGGACTAGTGGTTTTGATA+TGG + chr3_2:5528289-5528308 Msa0392400:CDS 35.0%
ATCAACACCAACAAAAAAGG+GGG - chr3_2:5528415-5528434 None:intergenic 35.0%
GATCAACACCAACAAAAAAG+GGG - chr3_2:5528416-5528435 None:intergenic 35.0%
GGATCAACACCAACAAAAAA+GGG - chr3_2:5528417-5528436 None:intergenic 35.0%
AGGATCAACACCAACAAAAA+AGG - chr3_2:5528418-5528437 None:intergenic 35.0%
CATGGTCTTTACTGTTTACT+TGG + chr3_2:5528463-5528482 Msa0392400:intron 35.0%
GGTATATAGCTCTTGAATAC+TGG + chr3_2:5528510-5528529 Msa0392400:intron 35.0%
!! TCTTGTCTTATGCTCTAAGA+AGG + chr3_2:5528645-5528664 Msa0392400:intron 35.0%
GACATAAAAGCTACAGATGT+CGG - chr3_2:5528715-5528734 None:intergenic 35.0%
! ATCTGTAGCTTTTATGTCCA+AGG + chr3_2:5528717-5528736 Msa0392400:intron 35.0%
CTGGAAACTATTACCTACTT+CGG + chr3_2:5528784-5528803 Msa0392400:intron 35.0%
! AAATACCTGATTTGTAGGCA+GGG - chr3_2:5529114-5529133 None:intergenic 35.0%
! AAAATACCTGATTTGTAGGC+AGG - chr3_2:5529115-5529134 None:intergenic 35.0%
TATGACACAACAGGTAAAAG+AGG + chr3_2:5529251-5529270 Msa0392400:intron 35.0%
GAAATCAATGCTAAAAGGGA+AGG - chr3_2:5529312-5529331 None:intergenic 35.0%
TTCTCATTCATGAACCAACA+TGG - chr3_2:5529463-5529482 None:intergenic 35.0%
!! TGTTGGTTCATGAATGAGAA+TGG + chr3_2:5529463-5529482 Msa0392400:intron 35.0%
!!! AGCTTTTTAGAGTATGTTGC+TGG + chr3_2:5529555-5529574 Msa0392400:intron 35.0%
TAGTTAAGTGAAGAACACGT+TGG + chr3_2:5529638-5529657 Msa0392400:intron 35.0%
AACTTTCTTCAGTCAGGTTA+TGG + chr3_2:5529744-5529763 Msa0392400:CDS 35.0%
!! AGAGACGGATTATAATCAGT+AGG - chr3_2:5530033-5530052 None:intergenic 35.0%
!! AGAGAGCTTTTAGAGACTTT+TGG + chr3_2:5530197-5530216 Msa0392400:three_prime_UTR 35.0%
CTAGTGAAAGATAGAGAAAC+AGG + chr3_2:5530239-5530258 Msa0392400:three_prime_UTR 35.0%
TAGAGAAACAGGGAATTCAA+AGG + chr3_2:5530250-5530269 Msa0392400:three_prime_UTR 35.0%
AGAGAAACAGGGAATTCAAA+GGG + chr3_2:5530251-5530270 Msa0392400:three_prime_UTR 35.0%
ACTTATGTTACAACCAGCAT+TGG + chr3_2:5530556-5530575 Msa0392400:three_prime_UTR 35.0%
AACTTAGGCCTGATTCTTTA+GGG - chr3_2:5530771-5530790 None:intergenic 35.0%
AAACTTAGGCCTGATTCTTT+AGG - chr3_2:5530772-5530791 None:intergenic 35.0%
CACAATATCTGCAGGTAATT+TGG + chr3_2:5530883-5530902 Msa0392400:intron 35.0%
TGCAGGTAATTTGGTTAATG+TGG + chr3_2:5530892-5530911 Msa0392400:intron 35.0%
! ATTCTCTACTCTTTTGTCTC+TGG + chr3_2:5530994-5531013 Msa0392400:intron 35.0%
GTTTGTCCTTCAGGAAATAA+TGG + chr3_2:5531052-5531071 Msa0392400:intron 35.0%
ATAAATTGGCATACTCGCTT+CGG - chr3_2:5531209-5531228 None:intergenic 35.0%
GATGTGACAACACACATAAT+TGG + chr3_2:5531247-5531266 Msa0392400:three_prime_UTR 35.0%
!! AATAATGCAGCATTGGCAAT+AGG - chr3_2:5531325-5531344 None:intergenic 35.0%
!! GAACCTGTTTTCTTTTTTGC+AGG + chr3_2:5531491-5531510 Msa0392400:three_prime_UTR 35.0%
GGACTGAATGGAAGAAAATT+TGG + chr3_2:5531561-5531580 Msa0392400:three_prime_UTR 35.0%
CTGAATGGAAGAAAATTTGG+TGG + chr3_2:5531564-5531583 Msa0392400:three_prime_UTR 35.0%
ATTAGAACAAATCCTCCATC+AGG - chr3_2:5531777-5531796 None:intergenic 35.0%
AGATCTTCTTCATCAACAGG+TGG - chr3_2:5525415-5525434 None:intergenic 40.0%
GTGAGATCTTCTTCATCAAC+AGG - chr3_2:5525418-5525437 None:intergenic 40.0%
GAATTGATCGGTGAAATCGT+AGG + chr3_2:5525664-5525683 Msa0392400:intron 40.0%
GTCCAAACAAAAACCCCAAA+GGG - chr3_2:5525738-5525757 None:intergenic 40.0%
GGACGAGAATTGCATTAAGT+TGG + chr3_2:5525754-5525773 Msa0392400:intron 40.0%
! CTGGTAATTGGGTACTGTAT+TGG + chr3_2:5525886-5525905 Msa0392400:intron 40.0%
AACGATGAAGAGGATTCATC+AGG - chr3_2:5525936-5525955 None:intergenic 40.0%
! TTCACATTTGAGACAACGCT+GGG - chr3_2:5526162-5526181 None:intergenic 40.0%
! ATTCACATTTGAGACAACGC+TGG - chr3_2:5526163-5526182 None:intergenic 40.0%
ATCCTCCAGAAGTAGAGAAA+AGG + chr3_2:5526649-5526668 Msa0392400:CDS 40.0%
GGAGAGAAAAGGAGAGAAAA+AGG + chr3_2:5526684-5526703 Msa0392400:CDS 40.0%
ATCGTAGTGAGAGAAAGGAA+AGG + chr3_2:5526924-5526943 Msa0392400:CDS 40.0%
TCGTAGTGAGAGAAAGGAAA+GGG + chr3_2:5526925-5526944 Msa0392400:CDS 40.0%
TGAGAGAAAGGAAAGGGTAA+GGG + chr3_2:5526931-5526950 Msa0392400:CDS 40.0%
! ACTTTTACCTGTCATAGCCT+CGG - chr3_2:5526985-5527004 None:intergenic 40.0%
TCGATCTAGATCAAGGTCAA+GGG + chr3_2:5527248-5527267 Msa0392400:CDS 40.0%
!!! TCTTTCTGGGACTTACCTTT+TGG - chr3_2:5527316-5527335 None:intergenic 40.0%
ATAGTTAAAGGATATGCGCG+AGG + chr3_2:5527430-5527449 Msa0392400:intron 40.0%
TAGTTAAAGGATATGCGCGA+GGG + chr3_2:5527431-5527450 Msa0392400:intron 40.0%
TTGTGTGAATGCATGTGGAA+GGG + chr3_2:5527467-5527486 Msa0392400:intron 40.0%
!!! CTATTGGCCTTTTGAGAACT+TGG + chr3_2:5527809-5527828 Msa0392400:intron 40.0%
! AATTTGGAACTCCATGGACT+TGG + chr3_2:5527960-5527979 Msa0392400:intron 40.0%
AAGAGATACTTCCAAGTCCA+TGG - chr3_2:5527974-5527993 None:intergenic 40.0%
!! CAAATTTCATAGGTGGTGGA+AGG + chr3_2:5528100-5528119 Msa0392400:intron 40.0%
ACTTACAGCAAAAGGACTAG+TGG + chr3_2:5528278-5528297 Msa0392400:intron 40.0%
!! TGTTGGTGTTGATCCTAGTA+TGG + chr3_2:5528422-5528441 Msa0392400:intron 40.0%
!! TCTTGAATACTGGTTTCCCT+TGG + chr3_2:5528520-5528539 Msa0392400:intron 40.0%
! TCTGGAACTAAATGGTGCTT+TGG + chr3_2:5528581-5528600 Msa0392400:intron 40.0%
!! ATGCTCTAAGAAGGCAATGT+TGG + chr3_2:5528654-5528673 Msa0392400:intron 40.0%
!! TGCTCTAAGAAGGCAATGTT+GGG + chr3_2:5528655-5528674 Msa0392400:intron 40.0%
! TGTAGCTTTTATGTCCAAGG+AGG + chr3_2:5528720-5528739 Msa0392400:intron 40.0%
! GGAATCAATGCACCTGTTTT+TGG + chr3_2:5528741-5528760 Msa0392400:intron 40.0%
!!! ATCAATGCACCTGTTTTTGG+TGG + chr3_2:5528744-5528763 Msa0392400:intron 40.0%
!!! TCAATGCACCTGTTTTTGGT+GGG + chr3_2:5528745-5528764 Msa0392400:intron 40.0%
ATTCGTAAGTCTACCGAAGT+AGG - chr3_2:5528800-5528819 None:intergenic 40.0%
! AATACCTGATTTGTAGGCAG+GGG - chr3_2:5529113-5529132 None:intergenic 40.0%
ATTACCTGCTCATTAGCTGT+AGG - chr3_2:5529416-5529435 None:intergenic 40.0%
AGTTGCAACTTTCTTCAGTC+AGG + chr3_2:5529738-5529757 Msa0392400:CDS 40.0%
AGTCAGGTTATGGCTACAAT+TGG + chr3_2:5529754-5529773 Msa0392400:CDS 40.0%
CAAAGGCAAACTTCTTGTCA+TGG - chr3_2:5529828-5529847 None:intergenic 40.0%
TGACAAGAAGTTTGCCTTTG+TGG + chr3_2:5529828-5529847 Msa0392400:CDS 40.0%
AGTTTGCCTTTGTGGAAATG+AGG + chr3_2:5529836-5529855 Msa0392400:CDS 40.0%
AGATTAAGGTTTGGGTAGGT+TGG - chr3_2:5530077-5530096 None:intergenic 40.0%
AACCTACCCAAACCTTAATC+TGG + chr3_2:5530076-5530095 Msa0392400:CDS 40.0%
ACCTACCCAAACCTTAATCT+GGG + chr3_2:5530077-5530096 Msa0392400:CDS 40.0%
CTAAGCCCAGATTAAGGTTT+GGG - chr3_2:5530085-5530104 None:intergenic 40.0%
ACTAAGCCCAGATTAAGGTT+TGG - chr3_2:5530086-5530105 None:intergenic 40.0%
AACCTTAATCTGGGCTTAGT+TGG + chr3_2:5530086-5530105 Msa0392400:exon 40.0%
! TAGAGACTTTTGGTCCTCTT+CGG + chr3_2:5530207-5530226 Msa0392400:three_prime_UTR 40.0%
! ATGCTCTCTTGTTCAGGTTT+AGG - chr3_2:5530404-5530423 None:intergenic 40.0%
! TATGTTACAACCAGCATTGG+TGG + chr3_2:5530559-5530578 Msa0392400:three_prime_UTR 40.0%
TCATCATCTTTGAGCTCATC+AGG - chr3_2:5530620-5530639 None:intergenic 40.0%
TGATGAGCTCAAAGATGATG+AGG + chr3_2:5530619-5530638 Msa0392400:three_prime_UTR 40.0%
! GATTCTTGATGATATGCGAC+AGG + chr3_2:5530652-5530671 Msa0392400:three_prime_UTR 40.0%
ACATTCTCCCCTAAAGAATC+AGG + chr3_2:5530760-5530779 Msa0392400:intron 40.0%
ACTTAGGCCTGATTCTTTAG+GGG - chr3_2:5530770-5530789 None:intergenic 40.0%
!! AGGCTTTGAGTCTGAAACTT+AGG - chr3_2:5530786-5530805 None:intergenic 40.0%
TTTGTCTGTGTTTGTCCTTC+AGG + chr3_2:5531043-5531062 Msa0392400:intron 40.0%
ATCACGCCATTATTTCCTGA+AGG - chr3_2:5531061-5531080 None:intergenic 40.0%
TTGGAGTATGCTGATGTTGA+TGG + chr3_2:5531519-5531538 Msa0392400:three_prime_UTR 40.0%
TTCTTCCATTCAGTCCAGAA+CGG - chr3_2:5531557-5531576 None:intergenic 40.0%
! TCCAGAGAACAAATTTGCTC+AGG + chr3_2:5531611-5531630 Msa0392400:three_prime_UTR 40.0%
! CCAGAGAACAAATTTGCTCA+GGG + chr3_2:5531612-5531631 Msa0392400:three_prime_UTR 40.0%
TCTTCTTCATCAACAGGTGG+TGG - chr3_2:5525412-5525431 None:intergenic 45.0%
!!! GACCCTTTGGGGTTTTTGTT+TGG + chr3_2:5525733-5525752 Msa0392400:intron 45.0%
CGTCCAAACAAAAACCCCAA+AGG - chr3_2:5525739-5525758 None:intergenic 45.0%
GCCAAAATTCACCACCATCT+GGG + chr3_2:5526248-5526267 Msa0392400:intron 45.0%
!! ACCCAGATGGTGGTGAATTT+TGG - chr3_2:5526252-5526271 None:intergenic 45.0%
AAATTCACCACCATCTGGGT+TGG + chr3_2:5526252-5526271 Msa0392400:intron 45.0%
AATTCACCACCATCTGGGTT+GGG + chr3_2:5526253-5526272 Msa0392400:intron 45.0%
AACTTTGATCCCAACCCAGA+TGG - chr3_2:5526265-5526284 None:intergenic 45.0%
! CTCCTTTTCTCTACTTCTGG+AGG - chr3_2:5526654-5526673 None:intergenic 45.0%
CCAGAAGTAGAGAAAAGGAG+CGG + chr3_2:5526654-5526673 Msa0392400:CDS 45.0%
CAGAAGTAGAGAAAAGGAGC+GGG + chr3_2:5526655-5526674 Msa0392400:CDS 45.0%
AAAGGGATAAGGGAAGAGAC+AGG + chr3_2:5526702-5526721 Msa0392400:CDS 45.0%
AAGGGATAAGGGAAGAGACA+GGG + chr3_2:5526703-5526722 Msa0392400:CDS 45.0%
AAGAGACAGGGATAGAAGCA+GGG + chr3_2:5526715-5526734 Msa0392400:CDS 45.0%
ATAGAAGCAGGGATAGGGAT+AGG + chr3_2:5526726-5526745 Msa0392400:CDS 45.0%
TAGAAGCAGGGATAGGGATA+GGG + chr3_2:5526727-5526746 Msa0392400:CDS 45.0%
ATAGGGATAGGGAGAAAAGC+AGG + chr3_2:5526738-5526757 Msa0392400:CDS 45.0%
TAGGGATAGGGAGAAAAGCA+GGG + chr3_2:5526739-5526758 Msa0392400:CDS 45.0%
GTGAGAGAAAGGAAAGGGTA+AGG + chr3_2:5526930-5526949 Msa0392400:CDS 45.0%
GATGATTATCACAGAAGCCG+AGG + chr3_2:5526965-5526984 Msa0392400:CDS 45.0%
ATGATCGAGAGGATAGGCAT+AGG + chr3_2:5527211-5527230 Msa0392400:CDS 45.0%
ACCTTGATCTAGATCGAGAC+CGG - chr3_2:5527245-5527264 None:intergenic 45.0%
CTCGATCTAGATCAAGGTCA+AGG + chr3_2:5527247-5527266 Msa0392400:CDS 45.0%
CTCGATCTGAGCATAGATCA+AGG + chr3_2:5527271-5527290 Msa0392400:CDS 45.0%
AGTTAAAGGATATGCGCGAG+GGG + chr3_2:5527432-5527451 Msa0392400:intron 45.0%
GTTGTGTGAATGCATGTGGA+AGG + chr3_2:5527466-5527485 Msa0392400:intron 45.0%
GTTACAATCACTGAGCAGCA+AGG - chr3_2:5528129-5528148 None:intergenic 45.0%
!!! GAACGTTGCTTTTCATGCAG+AGG - chr3_2:5528234-5528253 None:intergenic 45.0%
ACCCAATATCGCAGAAGTAG+GGG - chr3_2:5528318-5528337 None:intergenic 45.0%
CACCCAATATCGCAGAAGTA+GGG - chr3_2:5528319-5528338 None:intergenic 45.0%
GAACAAGACCCACCAAAAAC+AGG - chr3_2:5528756-5528775 None:intergenic 45.0%
!! GGGTCTTGTTCATCTTCAAC+TGG + chr3_2:5528765-5528784 Msa0392400:intron 45.0%
! CAACTGACTTCTGCTACAAC+TGG - chr3_2:5528943-5528962 None:intergenic 45.0%
! ATATGCCTTGCTGTACTTGC+AGG + chr3_2:5529035-5529054 Msa0392400:intron 45.0%
TACTTGCAGGTCAGATCTCT+GGG + chr3_2:5529048-5529067 Msa0392400:intron 45.0%
GGAAACATTCCAGGAATAGC+AGG - chr3_2:5529080-5529099 None:intergenic 45.0%
GTAGGCAGGGGAAACATATT+TGG - chr3_2:5529101-5529120 None:intergenic 45.0%
TGTCCAGCAGAACCAGAATT+GGG - chr3_2:5529148-5529167 None:intergenic 45.0%
TTGTCCAGCAGAACCAGAAT+TGG - chr3_2:5529149-5529168 None:intergenic 45.0%
!! AAGACAGGGAGAGCACTAAA+CGG - chr3_2:5529219-5529238 None:intergenic 45.0%
AGTTCAGGCTATGACACAAC+AGG + chr3_2:5529242-5529261 Msa0392400:CDS 45.0%
TGTCGTGTAGCCTACATGTT+TGG - chr3_2:5529362-5529381 None:intergenic 45.0%
CAGGTTATGGCTACAATTGG+AGG + chr3_2:5529757-5529776 Msa0392400:CDS 45.0%
ACATTCACAACTGCATCACC+TGG - chr3_2:5529796-5529815 None:intergenic 45.0%
AACGGACCTCATTTCCACAA+AGG - chr3_2:5529845-5529864 None:intergenic 45.0%
!! TGCATTGCTGGCTTCTTCAA+CGG - chr3_2:5529863-5529882 None:intergenic 45.0%
TGAAGAAGCCAGCAATGCAA+TGG + chr3_2:5529864-5529883 Msa0392400:CDS 45.0%
ATCCAAAGCCATTGCATTGC+TGG - chr3_2:5529875-5529894 None:intergenic 45.0%
!! AGCAATGCAATGGCTTTGGA+TGG + chr3_2:5529874-5529893 Msa0392400:CDS 45.0%
GTCCAACTAAGCCCAGATTA+AGG - chr3_2:5530091-5530110 None:intergenic 45.0%
! GGTCCTGATCGGATTTTTGT+TGG + chr3_2:5530140-5530159 Msa0392400:three_prime_UTR 45.0%
CCACCAACAAAAATCCGATC+AGG - chr3_2:5530146-5530165 None:intergenic 45.0%
! CCTGATCGGATTTTTGTTGG+TGG + chr3_2:5530143-5530162 Msa0392400:three_prime_UTR 45.0%
! AGAGACTTTTGGTCCTCTTC+GGG + chr3_2:5530208-5530227 Msa0392400:three_prime_UTR 45.0%
ACTAGATCAAAACCCCGAAG+AGG - chr3_2:5530224-5530243 None:intergenic 45.0%
TATTCCATTGAGAGCTGCAC+AGG - chr3_2:5530321-5530340 None:intergenic 45.0%
! GTTCAGGTTTAGGCTGCATT+GGG - chr3_2:5530394-5530413 None:intergenic 45.0%
! TGTTCAGGTTTAGGCTGCAT+TGG - chr3_2:5530395-5530414 None:intergenic 45.0%
CGACAGGAATGCTCCAAATT+TGG + chr3_2:5530668-5530687 Msa0392400:three_prime_UTR 45.0%
AGCAAACCTTTCCAACTCCA+GGG - chr3_2:5530952-5530971 None:intergenic 45.0%
AAGCAAACCTTTCCAACTCC+AGG - chr3_2:5530953-5530972 None:intergenic 45.0%
!! TGCAGCATTGGCAATAGGAA+AGG - chr3_2:5531320-5531339 None:intergenic 45.0%
TCTTCCATTCAGTCCAGAAC+GGG - chr3_2:5531556-5531575 None:intergenic 45.0%
! CCCTGAGCAAATTTGTTCTC+TGG - chr3_2:5531615-5531634 None:intergenic 45.0%
TTTGCTCAGGGCGATTATGA+AGG + chr3_2:5531624-5531643 Msa0392400:three_prime_UTR 45.0%
!!! ATTAAAATTTTGAAATTTTA+GGG - chr3_2:5525706-5525725 None:intergenic 5.0%
!!! CTTAAAATTTTAAAATTATT+AGG - chr3_2:5527642-5527661 None:intergenic 5.0%
! TCTTCATCAACAGGTGGTGG+TGG - chr3_2:5525409-5525428 None:intergenic 50.0%
GGCCAAAATTCACCACCATC+TGG + chr3_2:5526247-5526266 Msa0392400:intron 50.0%
TTTGATCCCAACCCAGATGG+TGG - chr3_2:5526262-5526281 None:intergenic 50.0%
! CCGCTCCTTTTCTCTACTTC+TGG - chr3_2:5526657-5526676 None:intergenic 50.0%
AGAGAAAAGGAGCGGGAGAA+TGG + chr3_2:5526662-5526681 Msa0392400:CDS 50.0%
GAGAAAAGGAGCGGGAGAAT+GGG + chr3_2:5526663-5526682 Msa0392400:CDS 50.0%
GAAGAGACAGGGATAGAAGC+AGG + chr3_2:5526714-5526733 Msa0392400:CDS 50.0%
ACAGGGATAGAAGCAGGGAT+AGG + chr3_2:5526720-5526739 Msa0392400:CDS 50.0%
CAGGGATAGAAGCAGGGATA+GGG + chr3_2:5526721-5526740 Msa0392400:CDS 50.0%
ACAGAGAGAGTGAGAGAAGC+AGG + chr3_2:5526762-5526781 Msa0392400:CDS 50.0%
CAGAGAGAGTGAGAGAAGCA+GGG + chr3_2:5526763-5526782 Msa0392400:CDS 50.0%
TCAGAGATAGGGAGAGAAGC+AGG + chr3_2:5526792-5526811 Msa0392400:CDS 50.0%
CAGAGATAGGGAGAGAAGCA+GGG + chr3_2:5526793-5526812 Msa0392400:CDS 50.0%
CTCTATGATGGTCACGGTCA+CGG - chr3_2:5526892-5526911 None:intergenic 50.0%
GGCGATCTCTATGATGGTCA+CGG - chr3_2:5526898-5526917 None:intergenic 50.0%
ACCATCATAGAGATCGCCAC+AGG + chr3_2:5526900-5526919 Msa0392400:CDS 50.0%
CCATCATAGAGATCGCCACA+GGG + chr3_2:5526901-5526920 Msa0392400:CDS 50.0%
TTCTCTCACTACGATCCCTG+TGG - chr3_2:5526919-5526938 None:intergenic 50.0%
CAGGGATCGTAGTGAGAGAA+AGG + chr3_2:5526919-5526938 Msa0392400:CDS 50.0%
! ACGAAGGGAGTATGATCGAG+AGG + chr3_2:5527200-5527219 Msa0392400:CDS 50.0%
! GGGAGTATGATCGAGAGGAT+AGG + chr3_2:5527205-5527224 Msa0392400:CDS 50.0%
GAGAGGATAGGCATAGGAGT+AGG + chr3_2:5527217-5527236 Msa0392400:CDS 50.0%
GTTCTCGTTCACGCTCCAAA+AGG + chr3_2:5527298-5527317 Msa0392400:CDS 50.0%
!! CGACTGGAACAACTTGTTGC+AGG - chr3_2:5527879-5527898 None:intergenic 50.0%
CAACACACATTGGACTCGAC+TGG - chr3_2:5527895-5527914 None:intergenic 50.0%
TCCCCCTACTTCTGCGATAT+TGG + chr3_2:5528313-5528332 Msa0392400:CDS 50.0%
CCCAATATCGCAGAAGTAGG+GGG - chr3_2:5528317-5528336 None:intergenic 50.0%
CCCCCTACTTCTGCGATATT+GGG + chr3_2:5528314-5528333 Msa0392400:CDS 50.0%
GCACCCAATATCGCAGAAGT+AGG - chr3_2:5528320-5528339 None:intergenic 50.0%
! TCTGCGATATTGGGTGCTAC+TGG + chr3_2:5528323-5528342 Msa0392400:CDS 50.0%
!! CAGGTGCATTGATTCCTCCT+TGG - chr3_2:5528737-5528756 None:intergenic 50.0%
TCTGACCTGCAAGTACAGCA+AGG - chr3_2:5529043-5529062 None:intergenic 50.0%
GTACTTGCAGGTCAGATCTC+TGG + chr3_2:5529047-5529066 Msa0392400:intron 50.0%
ACTTGCAGGTCAGATCTCTG+GGG + chr3_2:5529049-5529068 Msa0392400:intron 50.0%
GTTTCCCCTGCCTACAAATC+AGG + chr3_2:5529106-5529125 Msa0392400:CDS 50.0%
!! GTTCCCAATTCTGGTTCTGC+TGG + chr3_2:5529142-5529161 Msa0392400:intron 50.0%
AGGCTACACGACATGCTAGA+CGG + chr3_2:5529369-5529388 Msa0392400:intron 50.0%
CATGCTAGACGGGTGTATGT+TGG + chr3_2:5529380-5529399 Msa0392400:CDS 50.0%
GCTCATTAGCTGTAGGAGAG+AGG - chr3_2:5529409-5529428 None:intergenic 50.0%
CTCTCCTACAGCTAATGAGC+AGG + chr3_2:5529409-5529428 Msa0392400:CDS 50.0%
ACAATTGGAGGAAACACCGC+TGG + chr3_2:5529769-5529788 Msa0392400:CDS 50.0%
AGCCAGCAATGCAATGGCTT+TGG + chr3_2:5529870-5529889 Msa0392400:CDS 50.0%
AATTCAGGGTGCACCAGTGA+AGG + chr3_2:5529999-5530018 Msa0392400:intron 50.0%
! AAGGTTTGGGTAGGTTGGCT+TGG - chr3_2:5530072-5530091 None:intergenic 50.0%
GCCCAGATTAAGGTTTGGGT+AGG - chr3_2:5530081-5530100 None:intergenic 50.0%
GGCTTAGTTGGACTATCACC+TGG + chr3_2:5530098-5530117 Msa0392400:exon 50.0%
! GAGACTTTTGGTCCTCTTCG+GGG + chr3_2:5530209-5530228 Msa0392400:three_prime_UTR 50.0%
ATTGCCTGTGCAGCTCTCAA+TGG + chr3_2:5530314-5530333 Msa0392400:three_prime_UTR 50.0%
AGCAGATTGCTCTGCAGGTA+TGG + chr3_2:5530441-5530460 Msa0392400:intron 50.0%
AGATTGCTCTGCAGGTATGG+TGG + chr3_2:5530444-5530463 Msa0392400:intron 50.0%
GATTGCTCTGCAGGTATGGT+GGG + chr3_2:5530445-5530464 Msa0392400:intron 50.0%
!! ACCAGCATTGGTGGCAACAA+AGG + chr3_2:5530568-5530587 Msa0392400:three_prime_UTR 50.0%
ACCTTTGTTGCCACCAATGC+TGG - chr3_2:5530572-5530591 None:intergenic 50.0%
! ATTCAGTCCAGAACGGGCTT+TGG - chr3_2:5531550-5531569 None:intergenic 50.0%
! AAAGCCCGTTCTGGACTGAA+TGG + chr3_2:5531549-5531568 Msa0392400:three_prime_UTR 50.0%
TCAGCTGGAATAGCACCTGA+TGG + chr3_2:5531759-5531778 Msa0392400:three_prime_UTR 50.0%
!! TCATCAACAGGTGGTGGTGG+TGG - chr3_2:5525406-5525425 None:intergenic 55.0%
GCGGGAGAATGGGAGAGAAA+AGG + chr3_2:5526673-5526692 Msa0392400:CDS 55.0%
AGAGTGAGAGAAGCAGGGAC+AGG + chr3_2:5526768-5526787 Msa0392400:CDS 55.0%
GAGTGAGAGAAGCAGGGACA+GGG + chr3_2:5526769-5526788 Msa0392400:CDS 55.0%
CAGGGACAGGGTCAGAGATA+GGG + chr3_2:5526781-5526800 Msa0392400:CDS 55.0%
ATAGGGAGAGAAGCAGGGAC+AGG + chr3_2:5526798-5526817 Msa0392400:CDS 55.0%
TAGGGAGAGAAGCAGGGACA+GGG + chr3_2:5526799-5526818 Msa0392400:CDS 55.0%
GCAAAGACAGGGAACGCGAT+CGG + chr3_2:5526840-5526859 Msa0392400:CDS 55.0%
CAAAGACAGGGAACGCGATC+GGG + chr3_2:5526841-5526860 Msa0392400:CDS 55.0%
ATCGGGATGGGGAGAAGGAA+AGG + chr3_2:5526858-5526877 Msa0392400:CDS 55.0%
TCGGGATGGGGAGAAGGAAA+GGG + chr3_2:5526859-5526878 Msa0392400:CDS 55.0%
ATGGGGAGAAGGAAAGGGAG+AGG + chr3_2:5526864-5526883 Msa0392400:CDS 55.0%
TGGGGAGAAGGAAAGGGAGA+GGG + chr3_2:5526865-5526884 Msa0392400:CDS 55.0%
CCCTGTGGCGATCTCTATGA+TGG - chr3_2:5526904-5526923 None:intergenic 55.0%
ACAGAAGCCGAGGCTATGAC+AGG + chr3_2:5526975-5526994 Msa0392400:CDS 55.0%
ATAGGCATAGGAGTAGGCGC+CGG + chr3_2:5527223-5527242 Msa0392400:CDS 55.0%
GCCGGTCTCGATCTAGATCA+AGG + chr3_2:5527241-5527260 Msa0392400:CDS 55.0%
!! TTGGGTGCTACTGGTGTTGC+AGG + chr3_2:5528332-5528351 Msa0392400:CDS 55.0%
! TAGCCCCACTGTGCTGACAA+TGG + chr3_2:5528682-5528701 Msa0392400:intron 55.0%
! AGCCCCACTGTGCTGACAAT+GGG + chr3_2:5528683-5528702 Msa0392400:intron 55.0%
ACGCCCATTGTCAGCACAGT+GGG - chr3_2:5528689-5528708 None:intergenic 55.0%
GGCTACACGACATGCTAGAC+GGG + chr3_2:5529370-5529389 Msa0392400:intron 55.0%
GCTAGACGGGTGTATGTTGG+TGG + chr3_2:5529383-5529402 Msa0392400:CDS 55.0%
AACTGCATCACCTGGACCAG+CGG - chr3_2:5529788-5529807 None:intergenic 55.0%
GTAGGTCTCCTGACCTTCAC+TGG - chr3_2:5530015-5530034 None:intergenic 55.0%
!! GACTATCACCTGGCTCTGCT+GGG + chr3_2:5530108-5530127 Msa0392400:three_prime_UTR 55.0%
!! ACTATCACCTGGCTCTGCTG+GGG + chr3_2:5530109-5530128 Msa0392400:three_prime_UTR 55.0%
! GGGGACTTGATGGTCCTGAT+CGG + chr3_2:5530129-5530148 Msa0392400:three_prime_UTR 55.0%
ACAGCAGCAGATTGCTCTGC+AGG + chr3_2:5530436-5530455 Msa0392400:three_prime_UTR 55.0%
ACAGTTCACCATCAGGCCGT+GGG - chr3_2:5530928-5530947 None:intergenic 55.0%
ACTGTGCCCTGGAGTTGGAA+AGG + chr3_2:5530943-5530962 Msa0392400:three_prime_UTR 55.0%
GGTTCTACCAAAGCCCGTTC+TGG + chr3_2:5531540-5531559 Msa0392400:three_prime_UTR 55.0%
GCTGGAATAGCACCTGATGG+AGG + chr3_2:5531762-5531781 Msa0392400:three_prime_UTR 55.0%
!! TCAACAGGTGGTGGTGGTGG+TGG - chr3_2:5525403-5525422 None:intergenic 60.0%
GCAGGGACAGGGTCAGAGAT+AGG + chr3_2:5526780-5526799 Msa0392400:CDS 60.0%
AGGGAGAGAAGCAGGGACAG+GGG + chr3_2:5526800-5526819 Msa0392400:CDS 60.0%
ACAGGGAACGCGATCGGGAT+GGG + chr3_2:5526846-5526865 Msa0392400:CDS 60.0%
AAGGATATGCGCGAGGGGAC+TGG + chr3_2:5527437-5527456 Msa0392400:intron 60.0%
CGCCCATTGTCAGCACAGTG+GGG - chr3_2:5528688-5528707 None:intergenic 60.0%
CACGCCCATTGTCAGCACAG+TGG - chr3_2:5528690-5528709 None:intergenic 60.0%
GGGGCAAGTCCTGCTATTCC+TGG + chr3_2:5529068-5529087 Msa0392400:CDS 60.0%
AGGGTGCACCAGTGAAGGTC+AGG + chr3_2:5530004-5530023 Msa0392400:intron 60.0%
CCTAGGGCAGCAGCTAGAGA+CGG - chr3_2:5530048-5530067 None:intergenic 60.0%
CGTCTCTAGCTGCTGCCCTA+GGG + chr3_2:5530046-5530065 Msa0392400:CDS 60.0%
!! GGTAGGTTGGCTTGGCCCTA+GGG - chr3_2:5530064-5530083 None:intergenic 60.0%
!! GGACTATCACCTGGCTCTGC+TGG + chr3_2:5530107-5530126 Msa0392400:three_prime_UTR 60.0%
!! CTATCACCTGGCTCTGCTGG+GGG + chr3_2:5530110-5530129 Msa0392400:three_prime_UTR 60.0%
ATGTGGTGATCCCTCGCCCA+CGG + chr3_2:5530909-5530928 Msa0392400:three_prime_UTR 60.0%
CACAGTTCACCATCAGGCCG+TGG - chr3_2:5530929-5530948 None:intergenic 60.0%
CCAGGGCACAGTTCACCATC+AGG - chr3_2:5530935-5530954 None:intergenic 60.0%
! CCTGATGGTGAACTGTGCCC+TGG + chr3_2:5530932-5530951 Msa0392400:three_prime_UTR 60.0%
GGTGAACTGTGCCCTGGAGT+TGG + chr3_2:5530938-5530957 Msa0392400:three_prime_UTR 60.0%
!! GGTGGTGGTGGTGGTGGTTG+TGG - chr3_2:5525394-5525413 None:intergenic 65.0%
!! ACAGGTGGTGGTGGTGGTGG+TGG - chr3_2:5525400-5525419 None:intergenic 65.0%
GACAGGGAACGCGATCGGGA+TGG + chr3_2:5526845-5526864 Msa0392400:CDS 65.0%
CAGGGAACGCGATCGGGATG+GGG + chr3_2:5526847-5526866 Msa0392400:CDS 65.0%
ACGCGATCGGGATGGGGAGA+AGG + chr3_2:5526853-5526872 Msa0392400:CDS 65.0%
GGAGGAAACACCGCTGGTCC+AGG + chr3_2:5529775-5529794 Msa0392400:CDS 65.0%
CCGTCTCTAGCTGCTGCCCT+AGG + chr3_2:5530045-5530064 Msa0392400:CDS 65.0%
!! GGGTAGGTTGGCTTGGCCCT+AGG - chr3_2:5530065-5530084 None:intergenic 65.0%
TCAAGTCCCCCAGCAGAGCC+AGG - chr3_2:5530119-5530138 None:intergenic 65.0%
GGCTCTGCTGGGGGACTTGA+TGG + chr3_2:5530119-5530138 Msa0392400:three_prime_UTR 65.0%
ATCCCTCGCCCACGGCCTGA+TGG + chr3_2:5530917-5530936 Msa0392400:three_prime_UTR 70.0%
CACCATCAGGCCGTGGGCGA+GGG - chr3_2:5530922-5530941 None:intergenic 70.0%
TCACCATCAGGCCGTGGGCG+AGG - chr3_2:5530923-5530942 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 5525241 5531853 5525241 ID=Msa0392400;Name=Msa0392400
chr3_2 mRNA 5525241 5531853 5525241 ID=Msa0392400-mRNA-1;Parent=Msa0392400;Name=Msa0392400-mRNA-1;_AED=0.15;_eAED=0.15;_QI=72|1|1|1|0.90|0.83|12|1346|388
chr3_2 exon 5525241 5525453 5525241 ID=Msa0392400-mRNA-1:exon:1369;Parent=Msa0392400-mRNA-1
chr3_2 exon 5526617 5526996 5526617 ID=Msa0392400-mRNA-1:exon:1370;Parent=Msa0392400-mRNA-1
chr3_2 exon 5527200 5527319 5527200 ID=Msa0392400-mRNA-1:exon:1371;Parent=Msa0392400-mRNA-1
chr3_2 exon 5528286 5528353 5528286 ID=Msa0392400-mRNA-1:exon:1372;Parent=Msa0392400-mRNA-1
chr3_2 exon 5529057 5529127 5529057 ID=Msa0392400-mRNA-1:exon:1373;Parent=Msa0392400-mRNA-1
chr3_2 exon 5529210 5529263 5529210 ID=Msa0392400-mRNA-1:exon:1374;Parent=Msa0392400-mRNA-1
chr3_2 exon 5529371 5529430 5529371 ID=Msa0392400-mRNA-1:exon:1375;Parent=Msa0392400-mRNA-1
chr3_2 exon 5529736 5529909 5529736 ID=Msa0392400-mRNA-1:exon:1376;Parent=Msa0392400-mRNA-1
chr3_2 exon 5530006 5530457 5530006 ID=Msa0392400-mRNA-1:exon:1377;Parent=Msa0392400-mRNA-1
chr3_2 exon 5530554 5530689 5530554 ID=Msa0392400-mRNA-1:exon:1378;Parent=Msa0392400-mRNA-1
chr3_2 exon 5530897 5530964 5530897 ID=Msa0392400-mRNA-1:exon:1379;Parent=Msa0392400-mRNA-1
chr3_2 exon 5531065 5531853 5531065 ID=Msa0392400-mRNA-1:exon:1380;Parent=Msa0392400-mRNA-1
chr3_2 five_prime_UTR 5525241 5525312 5525241 ID=Msa0392400-mRNA-1:five_prime_utr;Parent=Msa0392400-mRNA-1
chr3_2 CDS 5525313 5525453 5525313 ID=Msa0392400-mRNA-1:cds;Parent=Msa0392400-mRNA-1
chr3_2 CDS 5526617 5526996 5526617 ID=Msa0392400-mRNA-1:cds;Parent=Msa0392400-mRNA-1
chr3_2 CDS 5527200 5527319 5527200 ID=Msa0392400-mRNA-1:cds;Parent=Msa0392400-mRNA-1
chr3_2 CDS 5528286 5528353 5528286 ID=Msa0392400-mRNA-1:cds;Parent=Msa0392400-mRNA-1
chr3_2 CDS 5529057 5529127 5529057 ID=Msa0392400-mRNA-1:cds;Parent=Msa0392400-mRNA-1
chr3_2 CDS 5529210 5529263 5529210 ID=Msa0392400-mRNA-1:cds;Parent=Msa0392400-mRNA-1
chr3_2 CDS 5529371 5529430 5529371 ID=Msa0392400-mRNA-1:cds;Parent=Msa0392400-mRNA-1
chr3_2 CDS 5529736 5529909 5529736 ID=Msa0392400-mRNA-1:cds;Parent=Msa0392400-mRNA-1
chr3_2 CDS 5530006 5530104 5530006 ID=Msa0392400-mRNA-1:cds;Parent=Msa0392400-mRNA-1
chr3_2 three_prime_UTR 5530105 5530457 5530105 ID=Msa0392400-mRNA-1:three_prime_utr;Parent=Msa0392400-mRNA-1
chr3_2 three_prime_UTR 5530554 5530689 5530554 ID=Msa0392400-mRNA-1:three_prime_utr;Parent=Msa0392400-mRNA-1
chr3_2 three_prime_UTR 5530897 5530964 5530897 ID=Msa0392400-mRNA-1:three_prime_utr;Parent=Msa0392400-mRNA-1
chr3_2 three_prime_UTR 5531065 5531853 5531065 ID=Msa0392400-mRNA-1:three_prime_utr;Parent=Msa0392400-mRNA-1
Gene Sequence

>Msa0392400

ATGGGTGAATACGAGTTCGAAGACGAAGAGAGAAAATTCCAACAACAAGAAGAAGATCATAATCACAACGATTCTTCTCCACAACCACCACCACCACCACCACCTGTTGATGAAGAAGATCTCACCGATTCCAAATCCAACCATGGTTCTCGTGATAATGACAGAGACAGAGAATCCTCCAGAAGTAGAGAAAAGGAGCGGGAGAATGGGAGAGAAAAGGAGAGAAAAAGGGATAAGGGAAGAGACAGGGATAGAAGCAGGGATAGGGATAGGGAGAAAAGCAGGGACAGAGAGAGTGAGAGAAGCAGGGACAGGGTCAGAGATAGGGAGAGAAGCAGGGACAGGGGCAGAGATAGTGAGAAAAGCAAAGACAGGGAACGCGATCGGGATGGGGAGAAGGAAAGGGAGAGGGACCGTGACCGTGACCATCATAGAGATCGCCACAGGGATCGTAGTGAGAGAAAGGAAAGGGTAAGGGATAGAGATGACGATGATTATCACAGAAGCCGAGGCTATGACAGACGAAGGGAGTATGATCGAGAGGATAGGCATAGGAGTAGGCGCCGGTCTCGATCTAGATCAAGGTCAAGGGCTCGATCTGAGCATAGATCAAGGTCACGTTCTCGTTCACGCTCCAAAAGCAAAAGGACTAGTGGTTTTGATATGGCTCCCCCTACTTCTGCGATATTGGGTGCTACTGGTGTTGCAGGTCAGATCTCTGGGGCAAGTCCTGCTATTCCTGGAATGTTTCCAAATATGTTTCCCCTGCCTACAAATCAGGTGCAGCCGTTTAGTGCTCTCCCTGTCTTGCCAGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGACGGGTGTATGTTGGTGGCCTCTCTCCTACAGCTAATGAGCAGTCAGTTGCAACTTTCTTCAGTCAGGTTATGGCTACAATTGGAGGAAACACCGCTGGTCCAGGTGATGCAGTTGTGAATGTTTACATTAACCATGACAAGAAGTTTGCCTTTGTGGAAATGAGGTCCGTTGAAGAAGCCAGCAATGCAATGGCTTTGGATGGAATTATTTTTGAGGGTGCACCAGTGAAGGTCAGGAGACCTACTGATTATAATCCGTCTCTAGCTGCTGCCCTAGGGCCAAGCCAACCTACCCAAACCTTAATCTGGGCTTAG
Protein sequence

>Msa0392400

MGEYEFEDEERKFQQQEEDHNHNDSSPQPPPPPPPVDEEDLTDSKSNHGSRDNDRDRESSRSREKERENGREKERKRDKGRDRDRSRDRDREKSRDRESERSRDRVRDRERSRDRGRDSEKSKDRERDRDGEKERERDRDRDHHRDRHRDRSERKERVRDRDDDDYHRSRGYDRRREYDREDRHRSRRRSRSRSRSRARSEHRSRSRSRSRSKSKRTSGFDMAPPTSAILGATGVAGQISGASPAIPGMFPNMFPLPTNQVQPFSALPVLPVQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPTQTLIWA*