AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0292370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292370 MtrunA17_Chr2g0313011 97.430 428 9 1 1 428 1 426 0.0 862
Msa0292370 MtrunA17_Chr7g0226391 79.348 92 19 0 331 422 1 92 1.10e-45 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0292370 AT1G78420.1 52.703 444 151 12 1 428 1 401 6.13e-131 383
Msa0292370 AT1G78420.2 52.703 444 151 12 1 428 1 401 6.13e-131 383
Msa0292370 AT1G17145.1 60.961 333 96 9 1 325 1 307 3.87e-117 345
Msa0292370 AT1G17145.2 66.270 252 64 6 1 246 1 237 5.90e-104 311

Find 132 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTAAAGTCTGTAATTT+TGG 0.109563 2_3:+41556794 Msa0292370:five_prime_UTR
TGCTTCAATCTTTCTTAAAT+TGG 0.170053 2_3:+41561887 Msa0292370:three_prime_UTR
AGAGTGCCCGATTTGCTTTC+TGG 0.213761 2_3:+41557532 Msa0292370:CDS
AGCAATCTGGCTTTCGATTC+AGG 0.228472 2_3:+41560116 Msa0292370:CDS
GGTGATGAATTGTGGGAATT+TGG 0.241533 2_3:+41556582 Msa0292370:five_prime_UTR
TCACACGACGTGTGCAATTT+TGG 0.242014 2_3:+41561968 Msa0292370:three_prime_UTR
AAGGTGCAAGCTTTGATTCT+AGG 0.295323 2_3:-41557472 None:intergenic
TTTACCTCTTGTTTACTTCA+AGG 0.309944 2_3:+41557046 Msa0292370:five_prime_UTR
GGCCTGCCGGGTCCTGTATT+TGG 0.315698 2_3:+41561931 Msa0292370:three_prime_UTR
TCTTTCGCTGATGCTACTTC+TGG 0.320602 2_3:+41561305 Msa0292370:CDS
TGTTGTGGAAATAGTGAATT+TGG 0.335511 2_3:+41556561 Msa0292370:five_prime_UTR
GCGCTTCATGGCAATAGTTT+AGG 0.346475 2_3:+41561855 Msa0292370:exon
TGATGTGTAAGCAGTGATTT+TGG 0.353189 2_3:+41556726 Msa0292370:five_prime_UTR
GATGCGGCAGCAGGAACTTC+AGG 0.362957 2_3:+41558620 Msa0292370:CDS
TGAAGAATTCAAAACATAAT+CGG 0.377826 2_3:+41557312 Msa0292370:five_prime_UTR
TAACCGGATTGGTAGAGATA+TGG 0.381702 2_3:+41561529 Msa0292370:CDS
TACGGCAGTTTCTTCATCTC+CGG 0.383737 2_3:-41557501 None:intergenic
TCAAAACTCTCAGGAACAAT+AGG 0.393911 2_3:-41561767 None:intergenic
TCCTCATCCCCATCCCCATC+AGG 0.397816 2_3:+41561386 Msa0292370:CDS
GCCTTGACTATGTGGCCTGC+CGG 0.401889 2_3:+41561918 Msa0292370:three_prime_UTR
TTCGTCTCCCATGGGTCAAC+AGG 0.420363 2_3:+41561355 Msa0292370:CDS
CATCTTGATCGGTTTAGACT+TGG 0.422282 2_3:-41558116 None:intergenic
CCCTGATGGGGATGGGGATG+AGG 0.422483 2_3:-41561387 None:intergenic
TTAGACCACCTCCTGCTACT+AGG 0.422910 2_3:+41558913 Msa0292370:CDS
TGTTGTCGAAACAGTGGTTT+TGG 0.423659 2_3:+41556937 Msa0292370:five_prime_UTR
AGAATTGTAATGAACAAGAA+AGG 0.432962 2_3:+41562200 Msa0292370:three_prime_UTR
AATTCTTCAACAAGATAATA+CGG 0.434180 2_3:-41557298 None:intergenic
AATCCGGTTATAAAACCTTC+TGG 0.439718 2_3:-41561516 None:intergenic
ACGCTCAGCAAGAGCTGCAA+TGG 0.441736 2_3:-41561423 None:intergenic
ACTTGGCATGGCTCGAGCTT+CGG 0.442906 2_3:-41561825 None:intergenic
TGTGTAGGCCGAGTTGAATT+CGG 0.453524 2_3:-41558268 None:intergenic
GACGATTTCATCGTGTTCAA+TGG 0.454271 2_3:-41558859 None:intergenic
CAAGTGGACAGAGCGCTTCA+TGG 0.454949 2_3:+41561843 Msa0292370:CDS
TCTCCCATGGGTCAACAGGC+AGG 0.455889 2_3:+41561359 Msa0292370:CDS
GTGAATTTGGTGATGAATTG+TGG 0.457708 2_3:+41556574 Msa0292370:five_prime_UTR
TCAAAACATAATCGGCAAAC+GGG 0.458068 2_3:+41557320 Msa0292370:five_prime_UTR
TTTGCTCAAACTCCAAATAC+AGG 0.458626 2_3:-41561943 None:intergenic
CGCTATGCTTCGTCTCCCAT+GGG 0.462162 2_3:+41561347 Msa0292370:CDS
CGGGCACTCTTCACGATCTA+CGG 0.462496 2_3:-41557519 None:intergenic
TTCAAAACATAATCGGCAAA+CGG 0.463545 2_3:+41557319 Msa0292370:five_prime_UTR
AAGCTTGCACCTTGCTATCC+CGG 0.465807 2_3:+41557482 Msa0292370:CDS
CATCTGGTGGCCCCTCATCC+AGG 0.467372 2_3:-41561574 None:intergenic
TACCTATTGGCCCTAGTAGC+AGG 0.467414 2_3:-41558924 None:intergenic
CCTTGACTATGTGGCCTGCC+GGG 0.468497 2_3:+41561919 Msa0292370:three_prime_UTR
TACATCATTCAACATGCTAC+CGG 0.468509 2_3:+41561490 Msa0292370:CDS
AATCATACCAGAAAGCAAAT+CGG 0.469586 2_3:-41557539 None:intergenic
GCTGAGCGTCAGCAAATGTC+TGG 0.471400 2_3:+41561437 Msa0292370:CDS
TCGCTATGCTTCGTCTCCCA+TGG 0.471409 2_3:+41561346 Msa0292370:CDS
CTCCTGCTACTAGGGCCAAT+AGG 0.472204 2_3:+41558922 Msa0292370:CDS
TAATGGTCATGGAAGCAATC+TGG 0.478936 2_3:+41560103 Msa0292370:CDS
GGGGCCACCAGATGATACTA+TGG 0.479702 2_3:+41561583 Msa0292370:CDS
TTTGTAACAGTGTGCTTTGG+TGG 0.480061 2_3:+41557198 Msa0292370:five_prime_UTR
GTCCCTGCCTGTTGACCCAT+GGG 0.480982 2_3:-41561362 None:intergenic
GGAGGAGCAGCGTGTTATTG+AGG 0.483212 2_3:+41558587 Msa0292370:intron
TACAGAAAATCAATGAGAGC+AGG 0.484183 2_3:-41562117 None:intergenic
ATCTGCTCCTCAAAACTCTC+AGG 0.487324 2_3:-41561776 None:intergenic
GTTGTTGCCATAGTATCATC+TGG 0.489130 2_3:-41561590 None:intergenic
CGATGCTTGCCTTGACTATG+TGG 0.489494 2_3:+41561910 Msa0292370:three_prime_UTR
ATCATACCAGAAAGCAAATC+GGG 0.489560 2_3:-41557538 None:intergenic
CATGAAGCGCTCTGTCCACT+TGG 0.490170 2_3:-41561842 None:intergenic
TAGACCACCTCCTGCTACTA+GGG 0.495326 2_3:+41558914 Msa0292370:CDS
TAAAATTACAGGAGAATGGC+AGG 0.498788 2_3:+41561270 Msa0292370:intron
ACGGCAGTTTCTTCATCTCC+GGG 0.500944 2_3:-41557500 None:intergenic
CAACTAGGTGTCATGATCAA+TGG 0.512630 2_3:+41561609 Msa0292370:CDS
TGAATCACAGGTAGCTGAAA+CGG 0.514060 2_3:+41561643 Msa0292370:CDS
TTATTCACCCACAGAAAACC+TGG 0.516563 2_3:+41561556 Msa0292370:CDS
GTAAAATCAAAAGAAGAGAA+GGG 0.518256 2_3:+41558451 Msa0292370:CDS
TGTTGATCTTGAGGACATAA+TGG 0.518495 2_3:+41560086 Msa0292370:CDS
TAGATGTCCCTTCTGTAAAA+CGG 0.520659 2_3:+41558402 Msa0292370:CDS
TGAATTTGGTGATGAATTGT+GGG 0.521403 2_3:+41556575 Msa0292370:five_prime_UTR
TGTCCCTGCCTGTTGACCCA+TGG 0.522801 2_3:-41561363 None:intergenic
GGAGCAGATGATGCTGGCTA+TGG 0.524553 2_3:+41561790 Msa0292370:CDS
CCTCATCCCCATCCCCATCA+GGG 0.525146 2_3:+41561387 Msa0292370:CDS
TGTAAAATCAAAAGAAGAGA+AGG 0.526230 2_3:+41558450 Msa0292370:CDS
TAACCATATCTCTACCAATC+CGG 0.528573 2_3:-41561532 None:intergenic
TCTTTGTGCAACATCTTGAT+CGG 0.528788 2_3:-41558127 None:intergenic
CTCCCATGGGTCAACAGGCA+GGG 0.534445 2_3:+41561360 Msa0292370:CDS
GTTTGATGGGTAATAAACTC+GGG 0.535047 2_3:+41557357 Msa0292370:exon
TTTGATTGTATTATATATGG+GGG 0.535073 2_3:+41557138 Msa0292370:five_prime_UTR
TCACAGTCTAATGACAATGA+TGG 0.540422 2_3:+41561722 Msa0292370:CDS
GTTGAATACAGTTCAAATGC+AGG 0.541389 2_3:+41558711 Msa0292370:CDS
GTATTAAAATTACAGGAGAA+TGG 0.543201 2_3:+41561266 Msa0292370:intron
TGTTTGATGGGTAATAAACT+CGG 0.549903 2_3:+41557356 Msa0292370:exon
TGAATTTGATGTTGATCTTG+AGG 0.552392 2_3:+41560077 Msa0292370:CDS
TAATGATTCAAGTTAGTGAA+AGG 0.555084 2_3:+41562054 Msa0292370:three_prime_UTR
CTCATCCCCATCCCCATCAG+GGG 0.555424 2_3:+41561388 Msa0292370:CDS
AGCGCTCTGTCCACTTGGCA+TGG 0.556265 2_3:-41561837 None:intergenic
GAGCATAGATCATGAATCAC+AGG 0.559149 2_3:+41561631 Msa0292370:CDS
ACGTCGATCAGAAGAAGCTG+AGG 0.563289 2_3:+41557441 Msa0292370:CDS
TTTGGCTTAGGTGAGTGTTG+TGG 0.566773 2_3:+41556546 Msa0292370:five_prime_UTR
TCTTGAGGACATAATGGTCA+TGG 0.569111 2_3:+41560092 Msa0292370:CDS
CCCGGCAGGCCACATAGTCA+AGG 0.574709 2_3:-41561919 None:intergenic
CATGGCAATAGTTTAGGTCA+AGG 0.575621 2_3:+41561861 Msa0292370:exon
TTATAAAACCTTCTGGAACC+CGG 0.576681 2_3:-41561509 None:intergenic
ACCCACAGAAAACCTGGATG+AGG 0.577604 2_3:+41561562 Msa0292370:CDS
TCTTCATCTCCGGGATAGCA+AGG 0.578489 2_3:-41557491 None:intergenic
TGCACAAAGAGCATTTGTAC+AGG 0.579872 2_3:+41558140 Msa0292370:CDS
CAAACTCCAAATACAGGACC+CGG 0.583382 2_3:-41561937 None:intergenic
ACATGCTACCGGGTTCCAGA+AGG 0.587505 2_3:+41561501 Msa0292370:CDS
TTTATATATACAGATGTCAA+AGG 0.587984 2_3:+41562026 Msa0292370:three_prime_UTR
CCCACAGAAAACCTGGATGA+GGG 0.588118 2_3:+41561563 Msa0292370:CDS
TTGGCCCTAGTAGCAGGAGG+TGG 0.589181 2_3:-41558918 None:intergenic
ATGATACTATGGCAACAACT+AGG 0.590761 2_3:+41561594 Msa0292370:CDS
TGGGTAATAAACTCGGGAGG+AGG 0.594697 2_3:+41557363 Msa0292370:CDS
ACAGAAAATCAATGAGAGCA+GGG 0.596938 2_3:-41562116 None:intergenic
GCAGGAACTTCAGGATGAAG+AGG 0.598330 2_3:+41558629 Msa0292370:CDS
TTGATTGTATTATATATGGG+GGG 0.599473 2_3:+41557139 Msa0292370:five_prime_UTR
CTCAGGAACAATAGGTTCTG+TGG 0.602243 2_3:-41561759 None:intergenic
ATCAAAAGAAGAGAAGGGGA+TGG 0.603530 2_3:+41558456 Msa0292370:CDS
CTCCAAATACAGGACCCGGC+AGG 0.608908 2_3:-41561933 None:intergenic
TTATGATTATACAACCCTTG+TGG 0.609519 2_3:-41557416 None:intergenic
GCAGGAGGTGGTCTAACCAT+CGG 0.610275 2_3:-41558906 None:intergenic
ACATCATTCAACATGCTACC+GGG 0.611208 2_3:+41561491 Msa0292370:CDS
CTAGTAACAGGATACTGTGT+AGG 0.613414 2_3:-41558283 None:intergenic
GAAGCTCGAGCCATGCCAAG+TGG 0.614648 2_3:+41561827 Msa0292370:CDS
TCATCCCCATCCCCATCAGG+GGG 0.614847 2_3:+41561389 Msa0292370:CDS
TAAAATCAAAAGAAGAGAAG+GGG 0.616791 2_3:+41558452 Msa0292370:CDS
AAGCTCTTCAAATGTGAATG+TGG 0.620819 2_3:+41558677 Msa0292370:CDS
CCACAGAAAACCTGGATGAG+GGG 0.621820 2_3:+41561564 Msa0292370:CDS
ATCACCTTGAAGTAAACAAG+AGG 0.621832 2_3:-41557050 None:intergenic
TGAAAGTTCCGAATTCAACT+CGG 0.633080 2_3:+41558260 Msa0292370:CDS
AGACTCGTGTGCCACACCGA+TGG 0.640068 2_3:+41558890 Msa0292370:CDS
GTTGAGTGTTGTCGAAACAG+TGG 0.662755 2_3:+41556931 Msa0292370:five_prime_UTR
AATTATGCTGTGGAGTATCG+TGG 0.665873 2_3:+41558427 Msa0292370:CDS
GTTGCCATAGTATCATCTGG+TGG 0.667006 2_3:-41561587 None:intergenic
ACTCGGGAGGAGGAGACAAG+TGG 0.676793 2_3:+41557373 Msa0292370:CDS
TCTGTTGAAGCAGAAGATCG+TGG 0.681261 2_3:+41561683 Msa0292370:CDS
TAAAACGGCGAATTATGCTG+TGG 0.684555 2_3:+41558417 Msa0292370:CDS
CTATTGGCCCTAGTAGCAGG+AGG 0.695760 2_3:-41558921 None:intergenic
AGCGATCATCAGCTACGTAG+TGG 0.698441 2_3:-41561328 None:intergenic
AGGTGGTCTAACCATCGGTG+TGG 0.700122 2_3:-41558901 None:intergenic
TGATGGGTAATAAACTCGGG+AGG 0.700314 2_3:+41557360 Msa0292370:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAATATATATATAAA+TGG + chr2_3:41559771-41559790 Msa0292370:intron 0.0%
!! ATAACATTATCTATAAAAAT+CGG - chr2_3:41557237-41557256 None:intergenic 10.0%
!!! TTAATACTTTTATAAACTAT+CGG + chr2_3:41560654-41560673 Msa0292370:intron 10.0%
!!! GTATAAATTAACATTTTTTT+AGG - chr2_3:41561045-41561064 None:intergenic 10.0%
!! AAAAAATGTTAATTTATACT+TGG + chr2_3:41561046-41561065 Msa0292370:intron 10.0%
!! TATATATGTATTAAAATTAC+AGG + chr2_3:41561259-41561278 Msa0292370:intron 10.0%
!!! GGGTTTTTTTTTTTTTTTTT+TGG + chr2_3:41556528-41556547 Msa0292370:five_prime_UTR 15.0%
!!! TTTTTTTTTTTTTTTGGCTT+AGG + chr2_3:41556534-41556553 Msa0292370:five_prime_UTR 15.0%
!!! TCTTTTGATTGTATTATATA+TGG + chr2_3:41557135-41557154 Msa0292370:five_prime_UTR 15.0%
!!! CTTTTGATTGTATTATATAT+GGG + chr2_3:41557136-41557155 Msa0292370:five_prime_UTR 15.0%
!!! TTTTGATTGTATTATATATG+GGG + chr2_3:41557137-41557156 Msa0292370:five_prime_UTR 15.0%
!!! GATTTTTGAAAATATATATG+TGG - chr2_3:41559857-41559876 None:intergenic 15.0%
!!! AGAAAGTATAATTTCAAAAA+TGG - chr2_3:41560011-41560030 None:intergenic 15.0%
!!! ATTTTTGAAATTATACTTTC+TGG + chr2_3:41560010-41560029 Msa0292370:intron 15.0%
!!! TTTTTGAAATTATACTTTCT+GGG + chr2_3:41560011-41560030 Msa0292370:intron 15.0%
!! AGTAAAAAATAGTATTAATG+AGG - chr2_3:41560424-41560443 None:intergenic 15.0%
!!! TTAATACTATTTTTTACTTC+TGG + chr2_3:41560426-41560445 Msa0292370:intron 15.0%
!! TAAAGAAATTTAAATGAAGA+GGG - chr2_3:41560602-41560621 None:intergenic 15.0%
!! ATAAAGAAATTTAAATGAAG+AGG - chr2_3:41560603-41560622 None:intergenic 15.0%
!!! TTAACATTTTTTTAGGAAAA+GGG - chr2_3:41561038-41561057 None:intergenic 15.0%
!!! ATTAACATTTTTTTAGGAAA+AGG - chr2_3:41561039-41561058 None:intergenic 15.0%
!!! TTTTGTATCGAATTGTTAAT+GGG + chr2_3:41556445-41556464 Msa0292370:five_prime_UTR 20.0%
!!! AAGTGATTTTCAAATTGTTA+AGG + chr2_3:41556622-41556641 Msa0292370:five_prime_UTR 20.0%
!!! ATAAGATAGTTTTGTGAATT+TGG + chr2_3:41556686-41556705 Msa0292370:five_prime_UTR 20.0%
!! TTTGATTGTATTATATATGG+GGG + chr2_3:41557138-41557157 Msa0292370:five_prime_UTR 20.0%
!! AATTCTTCAACAAGATAATA+CGG - chr2_3:41557301-41557320 None:intergenic 20.0%
!! TGAAGAATTCAAAACATAAT+CGG + chr2_3:41557312-41557331 Msa0292370:five_prime_UTR 20.0%
!!! AAAAACTGAATTTTGTTTGA+TGG + chr2_3:41557343-41557362 Msa0292370:exon 20.0%
!!! AAAACTGAATTTTGTTTGAT+GGG + chr2_3:41557344-41557363 Msa0292370:exon 20.0%
!! TATGCATAAGCTAAAAAATA+AGG - chr2_3:41557784-41557803 None:intergenic 20.0%
!! TAAGGTAGTTTATGAAAAAA+TGG + chr2_3:41557852-41557871 Msa0292370:intron 20.0%
!! TTGGATAATACTAAATTCAT+GGG - chr2_3:41558100-41558119 None:intergenic 20.0%
!! TTAATACTAAATCTACAAGA+AGG - chr2_3:41558358-41558377 None:intergenic 20.0%
!!! TTTTGTTTAAATTTCTGTAG+TGG + chr2_3:41558818-41558837 Msa0292370:intron 20.0%
!! AGTTGTGATTTAAAAATCAA+AGG - chr2_3:41559340-41559359 None:intergenic 20.0%
!!! GATTTTTAAATCACAACTAA+AGG + chr2_3:41559342-41559361 Msa0292370:intron 20.0%
!!! ACTTGATTTAGAATGTTTTA+CGG + chr2_3:41559579-41559598 Msa0292370:intron 20.0%
!! AACATTTAGCAAAAAATATC+AGG - chr2_3:41560041-41560060 None:intergenic 20.0%
!!! ATTGTTCTTTTGTAATGATA+GGG - chr2_3:41560813-41560832 None:intergenic 20.0%
!!! TATTGTTCTTTTGTAATGAT+AGG - chr2_3:41560814-41560833 None:intergenic 20.0%
!!! GAATGATGTATTTTCATTAT+TGG - chr2_3:41561480-41561499 None:intergenic 20.0%
!! TTTATATATACAGATGTCAA+AGG + chr2_3:41562026-41562045 Msa0292370:three_prime_UTR 20.0%
!! GTTTTGTATCGAATTGTTAA+TGG + chr2_3:41556444-41556463 Msa0292370:five_prime_UTR 25.0%
!! AATTTTGCTGCATTGAAATT+AGG + chr2_3:41556487-41556506 Msa0292370:five_prime_UTR 25.0%
!!! GTTTTGTGAATTTGGTTTTT+TGG + chr2_3:41556694-41556713 Msa0292370:five_prime_UTR 25.0%
!! TTGAGTGATTTTATTGCAAT+TGG + chr2_3:41556776-41556795 Msa0292370:five_prime_UTR 25.0%
!! ATTGGTAAAGTCTGTAATTT+TGG + chr2_3:41556794-41556813 Msa0292370:five_prime_UTR 25.0%
!! TTGGTAAAGTCTGTAATTTT+GGG + chr2_3:41556795-41556814 Msa0292370:five_prime_UTR 25.0%
!!! TTCTGAATTGGGATTTTTTT+TGG + chr2_3:41556895-41556914 Msa0292370:five_prime_UTR 25.0%
!!! TCTGAATTGGGATTTTTTTT+GGG + chr2_3:41556896-41556915 Msa0292370:five_prime_UTR 25.0%
! TTGATTGTATTATATATGGG+GGG + chr2_3:41557139-41557158 Msa0292370:five_prime_UTR 25.0%
! TGGTAGATGAAAAATATACA+CGG + chr2_3:41557393-41557412 Msa0292370:CDS 25.0%
! TTAAATAACTCGATTCAACT+TGG + chr2_3:41557605-41557624 Msa0292370:intron 25.0%
!!! TGTTTATGTAAAAGTGTTCA+AGG - chr2_3:41557718-41557737 None:intergenic 25.0%
! AAAAAATAAGGCAATCCAAA+CGG - chr2_3:41557772-41557791 None:intergenic 25.0%
!!! CATTATTCATTAGCTTGTTA+AGG + chr2_3:41557834-41557853 Msa0292370:intron 25.0%
! CAACGTAAAAGCTTATTTAT+TGG + chr2_3:41557915-41557934 Msa0292370:intron 25.0%
! CAAAAATAAGTCAATCCAAA+CGG + chr2_3:41557960-41557979 Msa0292370:intron 25.0%
! AAAAATAAGTCAATCCAAAC+GGG + chr2_3:41557961-41557980 Msa0292370:intron 25.0%
! GAATAGTTTGATTAGAAAAG+GGG - chr2_3:41558057-41558076 None:intergenic 25.0%
! GGAATAGTTTGATTAGAAAA+GGG - chr2_3:41558058-41558077 None:intergenic 25.0%
! TGGAATAGTTTGATTAGAAA+AGG - chr2_3:41558059-41558078 None:intergenic 25.0%
! CTTGGATAATACTAAATTCA+TGG - chr2_3:41558101-41558120 None:intergenic 25.0%
! CTGATAAAAGGAAATTAATC+AGG - chr2_3:41558225-41558244 None:intergenic 25.0%
! TGTAAAATCAAAAGAAGAGA+AGG + chr2_3:41558450-41558469 Msa0292370:CDS 25.0%
! GTAAAATCAAAAGAAGAGAA+GGG + chr2_3:41558451-41558470 Msa0292370:CDS 25.0%
! TAAAATCAAAAGAAGAGAAG+GGG + chr2_3:41558452-41558471 Msa0292370:CDS 25.0%
! ATGCATACTCATAAATATTC+AGG + chr2_3:41558566-41558585 Msa0292370:intron 25.0%
! TTACACATACAGAAAAAATC+TGG - chr2_3:41558763-41558782 None:intergenic 25.0%
!!! ATAAGTTGGTACAAAAACAA+TGG - chr2_3:41559021-41559040 None:intergenic 25.0%
!!! ATTGTTTTTGTACCAACTTA+TGG + chr2_3:41559020-41559039 Msa0292370:intron 25.0%
! TAGATCAAATATCCATAAGT+TGG - chr2_3:41559035-41559054 None:intergenic 25.0%
! TCATAAATGAATGTAACACT+TGG + chr2_3:41559205-41559224 Msa0292370:intron 25.0%
! ACAACTAAAGGAAATATTCA+TGG + chr2_3:41559354-41559373 Msa0292370:intron 25.0%
!!! AAAGCGATTAGCTTTTTAAA+AGG + chr2_3:41559502-41559521 Msa0292370:intron 25.0%
!!! CTTGATTTAGAATGTTTTAC+GGG + chr2_3:41559580-41559599 Msa0292370:intron 25.0%
! TAGAATGAGACAACTATTTA+AGG + chr2_3:41559643-41559662 Msa0292370:intron 25.0%
! AGACAACTATTTAAGGATTA+TGG + chr2_3:41559650-41559669 Msa0292370:intron 25.0%
!!! TCCATAAACCATTTTTAAAC+TGG + chr2_3:41559706-41559725 Msa0292370:intron 25.0%
! TTGCTAAATAAGCAGTAAAT+TGG + chr2_3:41559962-41559981 Msa0292370:intron 25.0%
! ATGCTAGATAATCTATTGTT+CGG + chr2_3:41560271-41560290 Msa0292370:intron 25.0%
! TTTCAAAATAGATCGACAAT+TGG - chr2_3:41560299-41560318 None:intergenic 25.0%
! TAATAATCCATAATTGAGCT+TGG + chr2_3:41560477-41560496 Msa0292370:intron 25.0%
! TTTAGGAAAAGGGAAATATA+TGG - chr2_3:41561028-41561047 None:intergenic 25.0%
! GTTCATATTATGAAATTCAG+TGG + chr2_3:41561136-41561155 Msa0292370:intron 25.0%
! GTATTAAAATTACAGGAGAA+TGG + chr2_3:41561266-41561285 Msa0292370:intron 25.0%
! TGCTTCAATCTTTCTTAAAT+TGG + chr2_3:41561887-41561906 Msa0292370:three_prime_UTR 25.0%
!! TAATGATTCAAGTTAGTGAA+AGG + chr2_3:41562054-41562073 Msa0292370:three_prime_UTR 25.0%
! CATCACACAGTAAAAAAAAA+TGG - chr2_3:41562093-41562112 None:intergenic 25.0%
! AGAATTGTAATGAACAAGAA+AGG + chr2_3:41562200-41562219 Msa0292370:three_prime_UTR 25.0%
!! AGGAGATTGTTTTGTGAATT+TGG + chr2_3:41556507-41556526 Msa0292370:five_prime_UTR 30.0%
!! GGAGATTGTTTTGTGAATTT+GGG + chr2_3:41556508-41556527 Msa0292370:five_prime_UTR 30.0%
TGTTGTGGAAATAGTGAATT+TGG + chr2_3:41556561-41556580 Msa0292370:five_prime_UTR 30.0%
!! TGAATTTGGTGATGAATTGT+GGG + chr2_3:41556575-41556594 Msa0292370:five_prime_UTR 30.0%
!!! CTGAATTGGGATTTTTTTTG+GGG + chr2_3:41556897-41556916 Msa0292370:five_prime_UTR 30.0%
! TTTGCAAAGTGTGTACTTTT+AGG + chr2_3:41557006-41557025 Msa0292370:five_prime_UTR 30.0%
!!! GTGTACTTTTAGGTTTTCTT+TGG + chr2_3:41557016-41557035 Msa0292370:five_prime_UTR 30.0%
! TTTACCTCTTGTTTACTTCA+AGG + chr2_3:41557046-41557065 Msa0292370:five_prime_UTR 30.0%
! TATTTTGTAACAGTGTGCTT+TGG + chr2_3:41557195-41557214 Msa0292370:five_prime_UTR 30.0%
TTCAAAACATAATCGGCAAA+CGG + chr2_3:41557319-41557338 Msa0292370:five_prime_UTR 30.0%
! TGTTTGATGGGTAATAAACT+CGG + chr2_3:41557356-41557375 Msa0292370:exon 30.0%
TTATGATTATACAACCCTTG+TGG - chr2_3:41557419-41557438 None:intergenic 30.0%
AATCATACCAGAAAGCAAAT+CGG - chr2_3:41557542-41557561 None:intergenic 30.0%
TAGCTATTGGAGATATGTAA+TGG - chr2_3:41557566-41557585 None:intergenic 30.0%
TACTGTAACTGAATAGCTAT+TGG - chr2_3:41557579-41557598 None:intergenic 30.0%
! TTTTCTTCGAACCAAACTAA+TGG + chr2_3:41557683-41557702 Msa0292370:intron 30.0%
AAAAATAAGGCAATCCAAAC+GGG - chr2_3:41557771-41557790 None:intergenic 30.0%
AAAAAACAGTCCATATGCTT+AGG - chr2_3:41557988-41558007 None:intergenic 30.0%
GGAAAAAAAACAAAGCACAA+TGG - chr2_3:41558079-41558098 None:intergenic 30.0%
! TAATGATTGGTTATCTTCAC+TGG + chr2_3:41558163-41558182 Msa0292370:intron 30.0%
CATACTCATAAATATTCAGG+AGG + chr2_3:41558569-41558588 Msa0292370:intron 30.0%
! GTGTTATTGAGGCAAAAATT+AGG + chr2_3:41558598-41558617 Msa0292370:CDS 30.0%
ACATAATAGGATAATGTTGC+GGG - chr2_3:41558980-41558999 None:intergenic 30.0%
GACATAATAGGATAATGTTG+CGG - chr2_3:41558981-41559000 None:intergenic 30.0%
CATTAGCACAAAATCATAGA+TGG - chr2_3:41559079-41559098 None:intergenic 30.0%
! ATGATTTTGTGCTAATGCTT+TGG + chr2_3:41559082-41559101 Msa0292370:intron 30.0%
GGAAATTCTTTCAACCAATA+AGG + chr2_3:41559103-41559122 Msa0292370:intron 30.0%
TTTCAACCAATAAGGTTACA+AGG + chr2_3:41559111-41559130 Msa0292370:intron 30.0%
AATACTCCTTGTAACCTTAT+TGG - chr2_3:41559120-41559139 None:intergenic 30.0%
TTAAAAATCAAAGGCTTAGC+TGG - chr2_3:41559331-41559350 None:intergenic 30.0%
ATCCATACAATCAAAACATC+AGG - chr2_3:41559429-41559448 None:intergenic 30.0%
!!! TGATGTTTTGATTGTATGGA+TGG + chr2_3:41559428-41559447 Msa0292370:intron 30.0%
TTGTATGGATGGATATGATT+AGG + chr2_3:41559439-41559458 Msa0292370:intron 30.0%
TGATACAAAAGAACGAATCA+TGG - chr2_3:41559557-41559576 None:intergenic 30.0%
GCCAGTTTAAAAATGGTTTA+TGG - chr2_3:41559710-41559729 None:intergenic 30.0%
CAAACAAGCCAGTTTAAAAA+TGG - chr2_3:41559717-41559736 None:intergenic 30.0%
ACTTGGATGTCATTAGTAAA+TGG - chr2_3:41559815-41559834 None:intergenic 30.0%
TATATGTGGAGTAACAATGA+AGG - chr2_3:41559843-41559862 None:intergenic 30.0%
! AGAGAAAAGAGTTTTCTCTT+AGG - chr2_3:41559883-41559902 None:intergenic 30.0%
TGAATTTGATGTTGATCTTG+AGG + chr2_3:41560077-41560096 Msa0292370:CDS 30.0%
AAAAGAAGCAAATTCTTCAC+AGG + chr2_3:41560368-41560387 Msa0292370:intron 30.0%
AAAGAAGCAAATTCTTCACA+GGG + chr2_3:41560369-41560388 Msa0292370:intron 30.0%
!! TACTTCTGGAAAGTGATTTT+TGG + chr2_3:41560440-41560459 Msa0292370:intron 30.0%
TTTATTGCTTGTGCATTTCT+AGG + chr2_3:41560618-41560637 Msa0292370:intron 30.0%
! TGTGTGAGACACTTATATTT+TGG + chr2_3:41560710-41560729 Msa0292370:intron 30.0%
TAATTAGACATCACATCACA+TGG - chr2_3:41560754-41560773 None:intergenic 30.0%
TAAATGTCACCCAAAATGAT+GGG - chr2_3:41560975-41560994 None:intergenic 30.0%
ATAAATGTCACCCAAAATGA+TGG - chr2_3:41560976-41560995 None:intergenic 30.0%
TTTGGGTGACATTTATATTG+TGG + chr2_3:41560980-41560999 Msa0292370:intron 30.0%
! AATATATGGTTTGGATGGAA+GGG - chr2_3:41561014-41561033 None:intergenic 30.0%
! AAATATATGGTTTGGATGGA+AGG - chr2_3:41561015-41561034 None:intergenic 30.0%
GAAAAGGGAAATATATGGTT+TGG - chr2_3:41561023-41561042 None:intergenic 30.0%
CATATTATGAAATTCAGTGG+TGG + chr2_3:41561139-41561158 Msa0292370:intron 30.0%
!! GTGAATTTGGTGATGAATTG+TGG + chr2_3:41556574-41556593 Msa0292370:five_prime_UTR 35.0%
! TGATGTGTAAGCAGTGATTT+TGG + chr2_3:41556726-41556745 Msa0292370:five_prime_UTR 35.0%
!! TACTCGCTTGTTTTCTGAAT+TGG + chr2_3:41556883-41556902 Msa0292370:five_prime_UTR 35.0%
!! ACTCGCTTGTTTTCTGAATT+GGG + chr2_3:41556884-41556903 Msa0292370:five_prime_UTR 35.0%
ATCACCTTGAAGTAAACAAG+AGG - chr2_3:41557053-41557072 None:intergenic 35.0%
GTATTATATATGGGGGGATT+AGG + chr2_3:41557145-41557164 Msa0292370:five_prime_UTR 35.0%
TCAAAACATAATCGGCAAAC+GGG + chr2_3:41557320-41557339 Msa0292370:five_prime_UTR 35.0%
! GTTTGATGGGTAATAAACTC+GGG + chr2_3:41557357-41557376 Msa0292370:exon 35.0%
AAAAATATACACGGCCACAA+GGG + chr2_3:41557402-41557421 Msa0292370:CDS 35.0%
ATCATACCAGAAAGCAAATC+GGG - chr2_3:41557541-41557560 None:intergenic 35.0%
! ATTTGACCTGTGATCAGTTT+TGG + chr2_3:41557647-41557666 Msa0292370:intron 35.0%
! TTTGACCTGTGATCAGTTTT+GGG + chr2_3:41557648-41557667 Msa0292370:intron 35.0%
GGTTACATTCTCCATTAGTT+TGG - chr2_3:41557697-41557716 None:intergenic 35.0%
AACATGCTGATCAGAATAGA+AGG + chr2_3:41557734-41557753 Msa0292370:intron 35.0%
TCAGAATAGAAGGAACACTA+AGG + chr2_3:41557744-41557763 Msa0292370:intron 35.0%
! GGTAAGCGAAATTCACATTT+TGG - chr2_3:41558036-41558055 None:intergenic 35.0%
TCTTTGTGCAACATCTTGAT+CGG - chr2_3:41558130-41558149 None:intergenic 35.0%
GCATTTGTACAGGTAATGAT+TGG + chr2_3:41558150-41558169 Msa0292370:intron 35.0%
!! GCAAAAAGCACTCTGATAAA+AGG - chr2_3:41558237-41558256 None:intergenic 35.0%
TGAAAGTTCCGAATTCAACT+CGG + chr2_3:41558260-41558279 Msa0292370:CDS 35.0%
TAGATGTCCCTTCTGTAAAA+CGG + chr2_3:41558402-41558421 Msa0292370:CDS 35.0%
!! TAATTCGCCGTTTTACAGAA+GGG - chr2_3:41558412-41558431 None:intergenic 35.0%
!! ATAATTCGCCGTTTTACAGA+AGG - chr2_3:41558413-41558432 None:intergenic 35.0%
TTGAGGCAAAAATTAGGATG+CGG + chr2_3:41558604-41558623 Msa0292370:CDS 35.0%
AAGCTCTTCAAATGTGAATG+TGG + chr2_3:41558677-41558696 Msa0292370:CDS 35.0%
GTTGAATACAGTTCAAATGC+AGG + chr2_3:41558711-41558730 Msa0292370:CDS 35.0%
GAAACGCTAAGAGACATAAT+AGG - chr2_3:41558993-41559012 None:intergenic 35.0%
TTATGTACTGAAAATCTCCC+TGG + chr2_3:41559254-41559273 Msa0292370:intron 35.0%
!!! CTCCTGATGTTTTGATTGTA+TGG + chr2_3:41559424-41559443 Msa0292370:intron 35.0%
!!! GCGATTAGCTTTTTAAAAGG+AGG + chr2_3:41559505-41559524 Msa0292370:intron 35.0%
! GGATTTGAGATACTGATATG+TGG + chr2_3:41559526-41559545 Msa0292370:intron 35.0%
AGTTGTCTCATTCTACTTCT+CGG - chr2_3:41559638-41559657 None:intergenic 35.0%
TAACAATGAAGGCTTCAACT+TGG - chr2_3:41559832-41559851 None:intergenic 35.0%
! CTCTTTTCTCTATCTTGTGA+TGG + chr2_3:41559892-41559911 Msa0292370:intron 35.0%
TGTTGATCTTGAGGACATAA+TGG + chr2_3:41560086-41560105 Msa0292370:CDS 35.0%
TAGTGTACCAAGCTCAATTA+TGG - chr2_3:41560487-41560506 None:intergenic 35.0%
! AAAGCAAATGCCCATCATTT+TGG + chr2_3:41560962-41560981 Msa0292370:intron 35.0%
! AAGCAAATGCCCATCATTTT+GGG + chr2_3:41560963-41560982 Msa0292370:intron 35.0%
! AGGGAAATATATGGTTTGGA+TGG - chr2_3:41561019-41561038 None:intergenic 35.0%
TACCTTATGCTTTACAGTTG+CGG - chr2_3:41561102-41561121 None:intergenic 35.0%
ATGCTGCCATGTAAAAGATT+TGG + chr2_3:41561164-41561183 Msa0292370:intron 35.0%
! GGTTTGCCAAATCTTTTACA+TGG - chr2_3:41561173-41561192 None:intergenic 35.0%
!! ATAGTAGTGTTAATGGACTC+AGG - chr2_3:41561194-41561213 None:intergenic 35.0%
AGTCCATTAACACTACTATG+TGG + chr2_3:41561195-41561214 Msa0292370:intron 35.0%
AAGCCACATAGTAGTGTTAA+TGG - chr2_3:41561201-41561220 None:intergenic 35.0%
TAAAATTACAGGAGAATGGC+AGG + chr2_3:41561270-41561289 Msa0292370:intron 35.0%
TACATCATTCAACATGCTAC+CGG + chr2_3:41561490-41561509 Msa0292370:CDS 35.0%
!! TTATAAAACCTTCTGGAACC+CGG - chr2_3:41561512-41561531 None:intergenic 35.0%
!! GTTCCAGAAGGTTTTATAAC+CGG + chr2_3:41561513-41561532 Msa0292370:CDS 35.0%
AATCCGGTTATAAAACCTTC+TGG - chr2_3:41561519-41561538 None:intergenic 35.0%
!! AGAAGGTTTTATAACCGGAT+TGG + chr2_3:41561518-41561537 Msa0292370:CDS 35.0%
TAACCATATCTCTACCAATC+CGG - chr2_3:41561535-41561554 None:intergenic 35.0%
ATGATACTATGGCAACAACT+AGG + chr2_3:41561594-41561613 Msa0292370:CDS 35.0%
TCACAGTCTAATGACAATGA+TGG + chr2_3:41561722-41561741 Msa0292370:CDS 35.0%
TCAAAACTCTCAGGAACAAT+AGG - chr2_3:41561770-41561789 None:intergenic 35.0%
! TATTGTTCCTGAGAGTTTTG+AGG + chr2_3:41561769-41561788 Msa0292370:CDS 35.0%
TTTGCTCAAACTCCAAATAC+AGG - chr2_3:41561946-41561965 None:intergenic 35.0%
ACAGAAAATCAATGAGAGCA+GGG - chr2_3:41562119-41562138 None:intergenic 35.0%
TACAGAAAATCAATGAGAGC+AGG - chr2_3:41562120-41562139 None:intergenic 35.0%
GGTGATGAATTGTGGGAATT+TGG + chr2_3:41556582-41556601 Msa0292370:five_prime_UTR 40.0%
! TGTTGTCGAAACAGTGGTTT+TGG + chr2_3:41556937-41556956 Msa0292370:five_prime_UTR 40.0%
! TTCAAGGTGATTTTGTCTGC+AGG + chr2_3:41557062-41557081 Msa0292370:five_prime_UTR 40.0%
! TCAAGGTGATTTTGTCTGCA+GGG + chr2_3:41557063-41557082 Msa0292370:five_prime_UTR 40.0%
TTTGTAACAGTGTGCTTTGG+TGG + chr2_3:41557198-41557217 Msa0292370:five_prime_UTR 40.0%
GAAAAATATACACGGCCACA+AGG + chr2_3:41557401-41557420 Msa0292370:CDS 40.0%
! AAGGTGCAAGCTTTGATTCT+AGG - chr2_3:41557475-41557494 None:intergenic 40.0%
! TTGACCTGTGATCAGTTTTG+GGG + chr2_3:41557649-41557668 Msa0292370:intron 40.0%
TAAACCCCAAAACTGATCAC+AGG - chr2_3:41557656-41557675 None:intergenic 40.0%
! CATCTTGATCGGTTTAGACT+TGG - chr2_3:41558119-41558138 None:intergenic 40.0%
!! TGCACAAAGAGCATTTGTAC+AGG + chr2_3:41558140-41558159 Msa0292370:CDS 40.0%
CTAGTAACAGGATACTGTGT+AGG - chr2_3:41558286-41558305 None:intergenic 40.0%
GAAGACAGACAACTAGTAAC+AGG - chr2_3:41558298-41558317 None:intergenic 40.0%
AGGGACATCTAATGCTGTTA+AGG - chr2_3:41558393-41558412 None:intergenic 40.0%
TAAAACGGCGAATTATGCTG+TGG + chr2_3:41558417-41558436 Msa0292370:CDS 40.0%
!! AATTATGCTGTGGAGTATCG+TGG + chr2_3:41558427-41558446 Msa0292370:CDS 40.0%
ATCAAAAGAAGAGAAGGGGA+TGG + chr2_3:41558456-41558475 Msa0292370:CDS 40.0%
GACGATTTCATCGTGTTCAA+TGG - chr2_3:41558862-41558881 None:intergenic 40.0%
GTGAACGCTATCATACCTAT+TGG - chr2_3:41558940-41558959 None:intergenic 40.0%
ATAGGATAATGTTGCGGGAT+TGG - chr2_3:41558975-41558994 None:intergenic 40.0%
!! GATGCTGACTTCAGGTAATT+TGG + chr2_3:41559279-41559298 Msa0292370:intron 40.0%
CAAAATGAATGCACCATAGC+TGG - chr2_3:41559306-41559325 None:intergenic 40.0%
! CAGCTATGGTGCATTCATTT+TGG + chr2_3:41559304-41559323 Msa0292370:intron 40.0%
GCACAGCTAAAACATAGTAG+CGG - chr2_3:41559678-41559697 None:intergenic 40.0%
AAGCAGTAAATTGGTGTGCA+TGG + chr2_3:41559971-41559990 Msa0292370:intron 40.0%
AGCAGTAAATTGGTGTGCAT+GGG + chr2_3:41559972-41559991 Msa0292370:intron 40.0%
TCTTGAGGACATAATGGTCA+TGG + chr2_3:41560092-41560111 Msa0292370:CDS 40.0%
TAATGGTCATGGAAGCAATC+TGG + chr2_3:41560103-41560122 Msa0292370:CDS 40.0%
TGTGAACCGCTATATTGCAA+GGG - chr2_3:41560219-41560238 None:intergenic 40.0%
TTGTGAACCGCTATATTGCA+AGG - chr2_3:41560220-41560239 None:intergenic 40.0%
TATAAGTGTCTCACACAGCA+TGG - chr2_3:41560707-41560726 None:intergenic 40.0%
!!! TGGGCATTTGCTTTTGACTT+TGG - chr2_3:41560956-41560975 None:intergenic 40.0%
ATCCGCAACTGTAAAGCATA+AGG + chr2_3:41561097-41561116 Msa0292370:intron 40.0%
ACATCATTCAACATGCTACC+GGG + chr2_3:41561491-41561510 Msa0292370:CDS 40.0%
!! TAACCGGATTGGTAGAGATA+TGG + chr2_3:41561529-41561548 Msa0292370:CDS 40.0%
TTATTCACCCACAGAAAACC+TGG + chr2_3:41561556-41561575 Msa0292370:CDS 40.0%
GTTGTTGCCATAGTATCATC+TGG - chr2_3:41561593-41561612 None:intergenic 40.0%
! CAACTAGGTGTCATGATCAA+TGG + chr2_3:41561609-41561628 Msa0292370:CDS 40.0%
GAGCATAGATCATGAATCAC+AGG + chr2_3:41561631-41561650 Msa0292370:CDS 40.0%
TGAATCACAGGTAGCTGAAA+CGG + chr2_3:41561643-41561662 Msa0292370:CDS 40.0%
CATGGCAATAGTTTAGGTCA+AGG + chr2_3:41561861-41561880 Msa0292370:exon 40.0%
!! TGCAATTTTGGTCAAGGATC+AGG + chr2_3:41561980-41561999 Msa0292370:three_prime_UTR 40.0%
! TTTGGCTTAGGTGAGTGTTG+TGG + chr2_3:41556546-41556565 Msa0292370:five_prime_UTR 45.0%
! GTTGAGTGTTGTCGAAACAG+TGG + chr2_3:41556931-41556950 Msa0292370:five_prime_UTR 45.0%
! GATTTTGTCTGCAGGGCTTT+TGG + chr2_3:41557070-41557089 Msa0292370:five_prime_UTR 45.0%
! TGATGGGTAATAAACTCGGG+AGG + chr2_3:41557360-41557379 Msa0292370:exon 45.0%
TACGGCAGTTTCTTCATCTC+CGG - chr2_3:41557504-41557523 None:intergenic 45.0%
! TGTGTAGGCCGAGTTGAATT+CGG - chr2_3:41558271-41558290 None:intergenic 45.0%
AGTTGTCTGTCTTCAATGCG+AGG + chr2_3:41558304-41558323 Msa0292370:intron 45.0%
AAAAATTAGGATGCGGCAGC+AGG + chr2_3:41558611-41558630 Msa0292370:CDS 45.0%
CAGGTAATTTGGTCCAGCTA+TGG + chr2_3:41559290-41559309 Msa0292370:intron 45.0%
CAAAACATCAGGAGCAGCAT+TGG - chr2_3:41559418-41559437 None:intergenic 45.0%
!! AGCAATCTGGCTTTCGATTC+AGG + chr2_3:41560116-41560135 Msa0292370:CDS 45.0%
ACCACTCCCTTGCAATATAG+CGG + chr2_3:41560210-41560229 Msa0292370:intron 45.0%
CATACAAGCTCGCATCTAGT+AGG + chr2_3:41560917-41560936 Msa0292370:intron 45.0%
! TCTTTCGCTGATGCTACTTC+TGG + chr2_3:41561305-41561324 Msa0292370:CDS 45.0%
GTTGCCATAGTATCATCTGG+TGG - chr2_3:41561590-41561609 None:intergenic 45.0%
TCTGTTGAAGCAGAAGATCG+TGG + chr2_3:41561683-41561702 Msa0292370:CDS 45.0%
CTCAGGAACAATAGGTTCTG+TGG - chr2_3:41561762-41561781 None:intergenic 45.0%
ATCTGCTCCTCAAAACTCTC+AGG - chr2_3:41561779-41561798 None:intergenic 45.0%
!! TTTTGAGGAGCAGATGATGC+TGG + chr2_3:41561784-41561803 Msa0292370:CDS 45.0%
GCGCTTCATGGCAATAGTTT+AGG + chr2_3:41561855-41561874 Msa0292370:exon 45.0%
CAAACTCCAAATACAGGACC+CGG - chr2_3:41561940-41561959 None:intergenic 45.0%
! TCACACGACGTGTGCAATTT+TGG + chr2_3:41561968-41561987 Msa0292370:three_prime_UTR 45.0%
!! GACGTGTGCAATTTTGGTCA+AGG + chr2_3:41561974-41561993 Msa0292370:three_prime_UTR 45.0%
TGGGTAATAAACTCGGGAGG+AGG + chr2_3:41557363-41557382 Msa0292370:CDS 50.0%
ACGTCGATCAGAAGAAGCTG+AGG + chr2_3:41557441-41557460 Msa0292370:CDS 50.0%
! AAGCTTGCACCTTGCTATCC+CGG + chr2_3:41557482-41557501 Msa0292370:CDS 50.0%
TCTTCATCTCCGGGATAGCA+AGG - chr2_3:41557494-41557513 None:intergenic 50.0%
ACGGCAGTTTCTTCATCTCC+GGG - chr2_3:41557503-41557522 None:intergenic 50.0%
! AGAGTGCCCGATTTGCTTTC+TGG + chr2_3:41557532-41557551 Msa0292370:CDS 50.0%
AGGAACACTAAGGTCCCGTT+TGG + chr2_3:41557754-41557773 Msa0292370:intron 50.0%
CCATATGCTTAGGACCCGTT+TGG - chr2_3:41557978-41557997 None:intergenic 50.0%
CCAAACGGGTCCTAAGCATA+TGG + chr2_3:41557975-41557994 Msa0292370:intron 50.0%
GCAGGAACTTCAGGATGAAG+AGG + chr2_3:41558629-41558648 Msa0292370:CDS 50.0%
TTAGACCACCTCCTGCTACT+AGG + chr2_3:41558913-41558932 Msa0292370:CDS 50.0%
TAGACCACCTCCTGCTACTA+GGG + chr2_3:41558914-41558933 Msa0292370:CDS 50.0%
TACCTATTGGCCCTAGTAGC+AGG - chr2_3:41558927-41558946 None:intergenic 50.0%
CCTGAAGTCAGCATCTTCCA+GGG - chr2_3:41559274-41559293 None:intergenic 50.0%
ACCTGAAGTCAGCATCTTCC+AGG - chr2_3:41559275-41559294 None:intergenic 50.0%
!! TCAGGAGCAGCATTGGTTCA+AGG - chr2_3:41559411-41559430 None:intergenic 50.0%
ACCGCTATATTGCAAGGGAG+TGG - chr2_3:41560214-41560233 None:intergenic 50.0%
AGGGTCAGTCAAAAGCTGAG+AGG - chr2_3:41560794-41560813 None:intergenic 50.0%
AGCGATCATCAGCTACGTAG+TGG - chr2_3:41561331-41561350 None:intergenic 50.0%
ACCCACAGAAAACCTGGATG+AGG + chr2_3:41561562-41561581 Msa0292370:CDS 50.0%
! CCCTCATCCAGGTTTTCTGT+GGG - chr2_3:41561566-41561585 None:intergenic 50.0%
CCCACAGAAAACCTGGATGA+GGG + chr2_3:41561563-41561582 Msa0292370:CDS 50.0%
CCACAGAAAACCTGGATGAG+GGG + chr2_3:41561564-41561583 Msa0292370:CDS 50.0%
CGATGCTTGCCTTGACTATG+TGG + chr2_3:41561910-41561929 Msa0292370:three_prime_UTR 50.0%
CGGGCACTCTTCACGATCTA+CGG - chr2_3:41557522-41557541 None:intergenic 55.0%
! GGAGGAGCAGCGTGTTATTG+AGG + chr2_3:41558587-41558606 Msa0292370:intron 55.0%
AGGTGGTCTAACCATCGGTG+TGG - chr2_3:41558904-41558923 None:intergenic 55.0%
GCAGGAGGTGGTCTAACCAT+CGG - chr2_3:41558909-41558928 None:intergenic 55.0%
CTATTGGCCCTAGTAGCAGG+AGG - chr2_3:41558924-41558943 None:intergenic 55.0%
CTCCTGCTACTAGGGCCAAT+AGG + chr2_3:41558922-41558941 Msa0292370:CDS 55.0%
!! CCCTGGAAGATGCTGACTTC+AGG + chr2_3:41559271-41559290 Msa0292370:intron 55.0%
TCGCTATGCTTCGTCTCCCA+TGG + chr2_3:41561346-41561365 Msa0292370:CDS 55.0%
CGCTATGCTTCGTCTCCCAT+GGG + chr2_3:41561347-41561366 Msa0292370:CDS 55.0%
TTCGTCTCCCATGGGTCAAC+AGG + chr2_3:41561355-41561374 Msa0292370:CDS 55.0%
ACAAGCAAGACCCCCTGATG+GGG - chr2_3:41561402-41561421 None:intergenic 55.0%
CACAAGCAAGACCCCCTGAT+GGG - chr2_3:41561403-41561422 None:intergenic 55.0%
GCTGAGCGTCAGCAAATGTC+TGG + chr2_3:41561437-41561456 Msa0292370:CDS 55.0%
ACATGCTACCGGGTTCCAGA+AGG + chr2_3:41561501-41561520 Msa0292370:CDS 55.0%
! CCCCTCATCCAGGTTTTCTG+TGG - chr2_3:41561567-41561586 None:intergenic 55.0%
GGGGCCACCAGATGATACTA+TGG + chr2_3:41561583-41561602 Msa0292370:CDS 55.0%
! GGAGCAGATGATGCTGGCTA+TGG + chr2_3:41561790-41561809 Msa0292370:CDS 55.0%
ACTTGGCATGGCTCGAGCTT+CGG - chr2_3:41561828-41561847 None:intergenic 55.0%
! CATGAAGCGCTCTGTCCACT+TGG - chr2_3:41561845-41561864 None:intergenic 55.0%
! CAAGTGGACAGAGCGCTTCA+TGG + chr2_3:41561843-41561862 Msa0292370:CDS 55.0%
ACTCGGGAGGAGGAGACAAG+TGG + chr2_3:41557373-41557392 Msa0292370:CDS 60.0%
GATGCGGCAGCAGGAACTTC+AGG + chr2_3:41558620-41558639 Msa0292370:CDS 60.0%
AGACTCGTGTGCCACACCGA+TGG + chr2_3:41558890-41558909 Msa0292370:CDS 60.0%
TTGGCCCTAGTAGCAGGAGG+TGG - chr2_3:41558921-41558940 None:intergenic 60.0%
TCTCCCATGGGTCAACAGGC+AGG + chr2_3:41561359-41561378 Msa0292370:CDS 60.0%
CTCCCATGGGTCAACAGGCA+GGG + chr2_3:41561360-41561379 Msa0292370:CDS 60.0%
GTCCCTGCCTGTTGACCCAT+GGG - chr2_3:41561365-41561384 None:intergenic 60.0%
TGTCCCTGCCTGTTGACCCA+TGG - chr2_3:41561366-41561385 None:intergenic 60.0%
TCCTCATCCCCATCCCCATC+AGG + chr2_3:41561386-41561405 Msa0292370:CDS 60.0%
CCTCATCCCCATCCCCATCA+GGG + chr2_3:41561387-41561406 Msa0292370:CDS 60.0%
CTCATCCCCATCCCCATCAG+GGG + chr2_3:41561388-41561407 Msa0292370:CDS 60.0%
TCATCCCCATCCCCATCAGG+GGG + chr2_3:41561389-41561408 Msa0292370:CDS 60.0%
AAGACCCCCTGATGGGGATG+GGG - chr2_3:41561396-41561415 None:intergenic 60.0%
CAAGACCCCCTGATGGGGAT+GGG - chr2_3:41561397-41561416 None:intergenic 60.0%
GCACAAGCAAGACCCCCTGA+TGG - chr2_3:41561404-41561423 None:intergenic 60.0%
GAAGCTCGAGCCATGCCAAG+TGG + chr2_3:41561827-41561846 Msa0292370:CDS 60.0%
AGCGCTCTGTCCACTTGGCA+TGG - chr2_3:41561840-41561859 None:intergenic 60.0%
GCCTTGACTATGTGGCCTGC+CGG + chr2_3:41561918-41561937 Msa0292370:three_prime_UTR 60.0%
CCTTGACTATGTGGCCTGCC+GGG + chr2_3:41561919-41561938 Msa0292370:three_prime_UTR 60.0%
CTCCAAATACAGGACCCGGC+AGG - chr2_3:41561936-41561955 None:intergenic 60.0%
CCCTGATGGGGATGGGGATG+AGG - chr2_3:41561390-41561409 None:intergenic 65.0%
GCAAGACCCCCTGATGGGGA+TGG - chr2_3:41561398-41561417 None:intergenic 65.0%
CATCTGGTGGCCCCTCATCC+AGG - chr2_3:41561577-41561596 None:intergenic 65.0%
CCCGGCAGGCCACATAGTCA+AGG - chr2_3:41561922-41561941 None:intergenic 65.0%
GGCCTGCCGGGTCCTGTATT+TGG + chr2_3:41561931-41561950 Msa0292370:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 41556437 41562278 41556437 ID=Msa0292370;Name=Msa0292370
chr2_3 mRNA 41556437 41562278 41556437 ID=Msa0292370-mRNA-1;Parent=Msa0292370;Name=Msa0292370-mRNA-1;_AED=0.09;_eAED=0.09;_QI=925|0.85|0.87|1|1|1|8|407|428
chr2_3 exon 41556437 41557553 41556437 ID=Msa0292370-mRNA-1:exon:13334;Parent=Msa0292370-mRNA-1
chr2_3 exon 41558110 41558161 41558110 ID=Msa0292370-mRNA-1:exon:13335;Parent=Msa0292370-mRNA-1
chr2_3 exon 41558245 41558290 41558245 ID=Msa0292370-mRNA-1:exon:13336;Parent=Msa0292370-mRNA-1
chr2_3 exon 41558399 41558486 41558399 ID=Msa0292370-mRNA-1:exon:13337;Parent=Msa0292370-mRNA-1
chr2_3 exon 41558588 41558732 41558588 ID=Msa0292370-mRNA-1:exon:13338;Parent=Msa0292370-mRNA-1
chr2_3 exon 41558838 41558943 41558838 ID=Msa0292370-mRNA-1:exon:13339;Parent=Msa0292370-mRNA-1
chr2_3 exon 41560071 41560137 41560071 ID=Msa0292370-mRNA-1:exon:13340;Parent=Msa0292370-mRNA-1
chr2_3 exon 41561281 41562278 41561281 ID=Msa0292370-mRNA-1:exon:13341;Parent=Msa0292370-mRNA-1
chr2_3 five_prime_UTR 41556437 41557361 41556437 ID=Msa0292370-mRNA-1:five_prime_utr;Parent=Msa0292370-mRNA-1
chr2_3 CDS 41557362 41557553 41557362 ID=Msa0292370-mRNA-1:cds;Parent=Msa0292370-mRNA-1
chr2_3 CDS 41558110 41558161 41558110 ID=Msa0292370-mRNA-1:cds;Parent=Msa0292370-mRNA-1
chr2_3 CDS 41558245 41558290 41558245 ID=Msa0292370-mRNA-1:cds;Parent=Msa0292370-mRNA-1
chr2_3 CDS 41558399 41558486 41558399 ID=Msa0292370-mRNA-1:cds;Parent=Msa0292370-mRNA-1
chr2_3 CDS 41558588 41558732 41558588 ID=Msa0292370-mRNA-1:cds;Parent=Msa0292370-mRNA-1
chr2_3 CDS 41558838 41558943 41558838 ID=Msa0292370-mRNA-1:cds;Parent=Msa0292370-mRNA-1
chr2_3 CDS 41560071 41560137 41560071 ID=Msa0292370-mRNA-1:cds;Parent=Msa0292370-mRNA-1
chr2_3 CDS 41561281 41561871 41561281 ID=Msa0292370-mRNA-1:cds;Parent=Msa0292370-mRNA-1
chr2_3 three_prime_UTR 41561872 41562278 41561872 ID=Msa0292370-mRNA-1:three_prime_utr;Parent=Msa0292370-mRNA-1
Gene Sequence

>Msa0292370

ATGGGTAATAAACTCGGGAGGAGGAGACAAGTGGTAGATGAAAAATATACACGGCCACAAGGGTTGTATAATCATAAAGACGTCGATCAGAAGAAGCTGAGGAAGCTAATCCTAGAATCAAAGCTTGCACCTTGCTATCCCGGAGATGAAGAAACTGCCGTAGATCGTGAAGAGTGCCCGATTTGCTTTCTGTATTATCCAAGTCTAAACCGATCAAGATGTTGCACAAAGAGCATTTGTACAGAGTGCTTTTTGCAGATGAAAGTTCCGAATTCAACTCGGCCTACACACATTAGATGTCCCTTCTGTAAAACGGCGAATTATGCTGTGGAGTATCGTGGTGTAAAATCAAAAGAAGAGAAGGGGATGGAACAGATTGAGGAGCAGCGTGTTATTGAGGCAAAAATTAGGATGCGGCAGCAGGAACTTCAGGATGAAGAGGAAAGAATGCATAAAAGACTAGAAGTAAGCTCTTCAAATGTGAATGTGGCTGTTGCAGATGTTGAATACAGTTCAAATGCAGTGGCTGAATCTTCAACATCTGCCATTGAACACGATGAAATCGTCTCTTCTCAAGACTCGTGTGCCACACCGATGGTTAGACCACCTCCTGCTACTAGGGCCAATAGAGATGATGAATTTGATGTTGATCTTGAGGACATAATGGTCATGGAAGCAATCTGGCTTTCGATTCAGGAGAATGGCAGGCAGAAAAATTTATCTTTCGCTGATGCTACTTCTGGCCACTACGTAGCTGATGATCGCTATGCTTCGTCTCCCATGGGTCAACAGGCAGGGACATCCTCATCCCCATCCCCATCAGGGGGTCTTGCTTGTGCCATTGCAGCTCTTGCTGAGCGTCAGCAAATGTCTGGAGAATCATCTGTAAGCTCCAATAATGAAAATACATCATTCAACATGCTACCGGGTTCCAGAAGGTTTTATAACCGGATTGGTAGAGATATGGTTAGTTATTCACCCACAGAAAACCTGGATGAGGGGCCACCAGATGATACTATGGCAACAACTAGGTGTCATGATCAATGGAGCATAGATCATGAATCACAGGTAGCTGAAACGGCAACTAGCTATGCAAACTCTGTTGAAGCAGAAGATCGTGGTGAACTGTCATCTATGTCACAGTCTAATGACAATGATGGAAGCTTTCAAACTGCCACAGAACCTATTGTTCCTGAGAGTTTTGAGGAGCAGATGATGCTGGCTATGGCTGTCTCTTTAGCCGAAGCTCGAGCCATGCCAAGTGGACAGAGCGCTTCATGGCAATAG
Protein sequence

>Msa0292370

MGNKLGRRRQVVDEKYTRPQGLYNHKDVDQKKLRKLILESKLAPCYPGDEETAVDREECPICFLYYPSLNRSRCCTKSICTECFLQMKVPNSTRPTHIRCPFCKTANYAVEYRGVKSKEEKGMEQIEEQRVIEAKIRMRQQELQDEEERMHKRLEVSSSNVNVAVADVEYSSNAVAESSTSAIEHDEIVSSQDSCATPMVRPPPATRANRDDEFDVDLEDIMVMEAIWLSIQENGRQKNLSFADATSGHYVADDRYASSPMGQQAGTSSSPSPSGGLACAIAALAERQQMSGESSVSSNNENTSFNMLPGSRRFYNRIGRDMVSYSPTENLDEGPPDDTMATTRCHDQWSIDHESQVAETATSYANSVEAEDRGELSSMSQSNDNDGSFQTATEPIVPESFEEQMMLAMAVSLAEARAMPSGQSASWQ*