AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0615710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0615710 MtrunA17_Chr4g0052291 99.764 423 1 0 1 423 1 423 0.0 880
Msa0615710 MtrunA17_Chr4g0036951 53.165 395 168 5 21 414 17 395 6.29e-142 410
Msa0615710 MtrunA17_Chr2g0299271 31.651 436 248 12 17 415 58 480 1.14e-61 207
Msa0615710 MtrunA17_Chr2g0330271 29.148 446 256 12 17 415 17 449 3.77e-50 176
Msa0615710 MtrunA17_Chr8g0377441 29.825 285 158 7 119 373 156 428 1.06e-30 123
Msa0615710 MtrunA17_Chr5g0406931 28.746 327 177 14 118 408 142 448 7.45e-25 105
Msa0615710 MtrunA17_Chr2g0283891 23.411 299 187 6 105 403 54 310 9.20e-19 86.7
Msa0615710 MtrunA17_Chr2g0283891 24.571 175 117 2 230 404 64 223 1.48e-11 65.1
Msa0615710 MtrunA17_Chr5g0401671 26.840 231 132 10 182 404 351 552 6.70e-15 76.6
Msa0615710 MtrunA17_Chr4g0053651 26.556 241 140 10 174 406 326 537 9.35e-15 76.3
Msa0615710 MtrunA17_Chr5g0401661 26.778 239 138 10 174 404 433 642 9.43e-15 76.3
Msa0615710 MtrunA17_Chr5g0447911 27.778 180 114 3 177 349 250 420 7.28e-13 70.1
Msa0615710 MtrunA17_Chr4g0004241 25.123 203 130 5 194 385 30 221 1.02e-12 70.1
Msa0615710 MtrunA17_Chr2g0281451 27.885 208 121 9 194 389 73 263 1.30e-12 70.1
Msa0615710 MtrunA17_Chr2g0281451 25.592 211 129 8 194 404 31 213 6.22e-11 64.7
Msa0615710 MtrunA17_Chr2g0331981 24.631 203 131 5 194 385 30 221 2.01e-12 69.3
Msa0615710 MtrunA17_Chr6g0448921 25.000 192 122 7 221 411 10 180 5.13e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0615710 AT5G58230.1 88.942 416 46 0 1 416 1 416 0.0 776
Msa0615710 AT2G16780.1 53.555 422 164 8 2 414 5 403 3.28e-152 437
Msa0615710 AT4G35050.1 52.439 410 175 6 6 409 4 399 1.43e-147 426
Msa0615710 AT2G19520.1 32.353 442 240 13 17 415 64 489 1.53e-62 210
Msa0615710 AT4G29730.1 29.412 442 251 12 13 415 50 469 1.31e-55 191
Msa0615710 AT4G29730.3 29.008 393 225 11 13 373 50 420 6.79e-45 162
Msa0615710 AT4G29730.2 29.008 393 225 11 13 373 50 420 6.79e-45 162
Msa0615710 AT2G19540.1 29.375 320 187 9 119 408 153 463 6.87e-31 124
Msa0615710 AT1G29260.1 25.957 235 152 4 169 403 97 309 3.98e-17 82.4
Msa0615710 AT1G29260.1 28.000 175 111 2 230 404 63 222 6.30e-14 72.8
Msa0615710 AT1G52360.4 25.616 203 129 5 194 385 30 221 8.67e-13 70.9
Msa0615710 AT1G52360.1 25.616 203 129 5 194 385 30 221 8.67e-13 70.9
Msa0615710 AT1G52360.3 25.616 203 129 5 194 385 30 221 9.63e-13 70.9
Msa0615710 AT2G32950.2 25.941 239 157 8 114 347 241 464 1.20e-12 70.1
Msa0615710 AT1G11160.3 28.431 204 125 9 194 389 31 221 1.23e-12 70.5
Msa0615710 AT1G52360.2 25.616 203 129 5 194 385 74 265 1.35e-12 70.5
Msa0615710 AT2G32950.1 25.941 239 157 8 114 347 354 577 1.46e-12 70.1
Msa0615710 AT1G11160.1 26.000 250 134 8 184 389 21 263 1.61e-12 70.1
Msa0615710 AT3G63460.3 26.923 182 117 6 174 346 118 292 1.67e-12 70.1
Msa0615710 AT3G63460.2 26.923 182 117 6 174 346 118 292 1.72e-12 70.1
Msa0615710 AT3G63460.1 26.923 182 117 6 174 346 118 292 1.78e-12 70.1
Msa0615710 AT1G11160.4 26.000 250 134 8 184 389 21 263 2.02e-12 69.7
Msa0615710 AT1G11160.2 26.000 250 134 8 184 389 21 263 2.04e-12 69.7
Msa0615710 AT3G49660.1 29.224 219 138 9 163 372 6 216 4.01e-12 67.4
Msa0615710 AT5G23430.3 25.543 184 116 6 221 404 10 172 4.78e-12 68.6
Msa0615710 AT5G23430.2 25.543 184 116 6 221 404 10 172 4.78e-12 68.6
Msa0615710 AT5G08390.1 25.000 192 122 7 221 411 10 180 4.83e-12 68.6
Msa0615710 AT5G23430.1 25.543 184 116 6 221 404 10 172 4.87e-12 68.6
Msa0615710 AT3G15980.7 25.123 203 130 5 194 385 30 221 5.17e-12 68.6
Msa0615710 AT3G15980.1 25.123 203 130 5 194 385 30 221 5.58e-12 68.2
Msa0615710 AT3G15980.3 25.123 203 130 5 194 385 30 221 5.70e-12 68.2
Msa0615710 AT3G15980.6 25.123 203 130 5 194 385 30 221 5.70e-12 68.2
Msa0615710 AT3G15980.2 25.123 203 130 5 194 385 30 221 5.70e-12 68.2
Msa0615710 AT3G15980.4 25.123 203 130 5 194 385 30 221 5.70e-12 68.2
Msa0615710 AT3G15980.5 25.123 203 130 5 194 385 30 221 5.88e-12 68.2
Msa0615710 AT5G13480.2 24.286 280 165 12 127 402 136 372 3.59e-11 65.5
Msa0615710 AT5G13480.3 24.286 280 165 12 127 402 113 349 3.60e-11 65.5
Msa0615710 AT5G13480.1 24.286 280 165 12 127 402 125 361 3.62e-11 65.5
Msa0615710 AT5G13480.4 24.286 280 165 12 127 402 113 349 3.78e-11 65.5
Msa0615710 AT1G79990.1 24.631 203 131 5 194 385 30 221 4.51e-11 65.5
Msa0615710 AT1G79990.2 24.631 203 131 5 194 385 30 221 4.86e-11 65.5
Msa0615710 AT2G43770.1 26.160 237 143 10 170 404 45 251 5.48e-11 63.9

Find 119 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAGACAGTTTCATTCTT+TGG 0.185089 4_2:+65212544 None:intergenic
AACTGAGTTCAATTACATTA+AGG 0.220917 4_2:+65211498 None:intergenic
ATTCAGCCACATCGGTTAAA+AGG 0.238214 4_2:+65211239 None:intergenic
ATTTGTTTGTGGGATATTAA+TGG 0.257426 4_2:-65214741 Msa0615710:CDS
CTGTGCGAGCATGAGGTAAT+TGG 0.260060 4_2:+65215118 None:intergenic
AGGTTGAATGTTTGGGTCTA+AGG 0.261250 4_2:-65211462 Msa0615710:three_prime_UTR
ACATCACATTTGAGAGAGTT+AGG 0.277178 4_2:-65215383 Msa0615710:five_prime_UTR
CCAAGACAGTTTCATTCTTT+GGG 0.298461 4_2:+65212545 None:intergenic
CGTCCTGAAGTTGGAGGGTT+TGG 0.303486 4_2:-65215041 Msa0615710:CDS
GCATCAAGAGACTTATTCTT+AGG 0.319433 4_2:+65214714 None:intergenic
ATGATCAGTATTTGCTTGTA+TGG 0.322224 4_2:-65214523 Msa0615710:CDS
CCATCAATTGGAGGCTTAGA+AGG 0.322579 4_2:+65214873 None:intergenic
GGGGCCTGTGCTGACTGTTC+TGG 0.324266 4_2:+65211519 None:intergenic
CTTTCAATCCCTTCAATGAA+TGG 0.340735 4_2:-65212774 Msa0615710:CDS
CCTTCTAAGCCTCCAATTGA+TGG 0.346065 4_2:-65214873 Msa0615710:CDS
TTGAGGCATGAGTATTTGTT+TGG 0.347301 4_2:-65214557 Msa0615710:CDS
TGTCCTCTTAACCTCAAATC+AGG 0.355268 4_2:+65214840 None:intergenic
TTGTTATGCGTCGAGTCATT+AGG 0.355516 4_2:-65211309 Msa0615710:three_prime_UTR
AAGACAACATACTTCAAATA+TGG 0.358936 4_2:-65211581 Msa0615710:CDS
ATTGTAGTTGTATTTCAATA+TGG 0.359917 4_2:-65211397 Msa0615710:three_prime_UTR
CATGGAACCCATGTGAAGAT+TGG 0.363420 4_2:-65211623 Msa0615710:CDS
ACTGAGTTCAATTACATTAA+GGG 0.365910 4_2:+65211499 None:intergenic
TGAAATATAGGTTGAATGTT+TGG 0.371631 4_2:-65211470 Msa0615710:three_prime_UTR
TCAACGAAGAATACAAAATC+TGG 0.373066 4_2:-65215298 Msa0615710:CDS
CTCAGTTTAGTGTGAAATAT+AGG 0.376554 4_2:-65211482 Msa0615710:three_prime_UTR
AGTATTTGTTTGGTTCTGTT+GGG 0.383674 4_2:-65214547 Msa0615710:CDS
GTCTTGGCTTCTTGTTGTCT+TGG 0.391546 4_2:-65212529 Msa0615710:CDS
GTGAAGAAGTGAGGAAGTAG+TGG 0.394173 4_2:-65215463 None:intergenic
TGGCTTCTTGTTGTCTTGGT+AGG 0.395080 4_2:-65212525 Msa0615710:CDS
CAACCAAACCCTCCAACTTC+AGG 0.396221 4_2:+65215038 None:intergenic
AAACAAGGACATTTGCTTAG+TGG 0.397496 4_2:-65214780 Msa0615710:CDS
GGACATAATACTGAAGGTTA+TGG 0.401530 4_2:-65214822 Msa0615710:CDS
CCGGCGGGTTCAGTGCGATC+TGG 0.403346 4_2:+65215197 None:intergenic
AACCCTGATTTGAGGTTAAG+AGG 0.408019 4_2:-65214843 Msa0615710:CDS
CTGAAGGTTATGGTTTGTCT+TGG 0.425247 4_2:-65214812 Msa0615710:CDS
GGGTTACAACTTCCATCAAT+TGG 0.425575 4_2:+65214861 None:intergenic
TTTGTTTGTTAGGTTCATGA+AGG 0.438709 4_2:-65214605 Msa0615710:intron
GAGTATTTGTTTGGTTCTGT+TGG 0.442494 4_2:-65214548 Msa0615710:CDS
GGAGGGTTTGGTTGTGCGAA+TGG 0.452217 4_2:-65215029 Msa0615710:CDS
TTGTGGGATCTGCGCAAGAT+TGG 0.469154 4_2:-65212715 Msa0615710:CDS
AGGAAGTAGTGGGATAGAGA+AGG 0.469360 4_2:-65215452 Msa0615710:five_prime_UTR
TGAGCAATGCAAGACTGAAC+AGG 0.469797 4_2:+65214473 None:intergenic
TCTTTGGGTTCCAGCCAACC+TGG 0.471969 4_2:+65212560 None:intergenic
GGAAGTAGTGGGATAGAGAA+GGG 0.472455 4_2:-65215451 Msa0615710:five_prime_UTR
GAGGGTTTGGTTGTGCGAAT+GGG 0.473972 4_2:-65215028 Msa0615710:CDS
GGACCATCTTCAGCATCCTC+TGG 0.473998 4_2:+65211699 None:intergenic
GAAATATAGGTTGAATGTTT+GGG 0.476064 4_2:-65211469 Msa0615710:three_prime_UTR
TGATGCTCAGATTTGTTTGT+GGG 0.482057 4_2:-65214751 Msa0615710:CDS
TGTGCGAGCATGAGGTAATT+GGG 0.482873 4_2:+65215119 None:intergenic
CATCACATTTGAGAGAGTTA+GGG 0.484531 4_2:-65215382 Msa0615710:five_prime_UTR
CGGACAAAACAGTGAAATTG+TGG 0.487959 4_2:-65212732 Msa0615710:CDS
CCCAAAGAATGAAACTGTCT+TGG 0.489287 4_2:-65212545 Msa0615710:CDS
GCAAAATATCCGACTTCTCA+TGG 0.491026 4_2:-65211641 Msa0615710:CDS
TTCAGCCACATCGGTTAAAA+GGG 0.497542 4_2:+65211240 None:intergenic
GATGACGATCGTCCTGAAGT+TGG 0.499636 4_2:-65215050 Msa0615710:CDS
AAGATGTGGCTTGGCATTTG+AGG 0.499952 4_2:-65214574 Msa0615710:CDS
TTGTATTTCAATATGGTATG+AGG 0.502486 4_2:-65211390 Msa0615710:three_prime_UTR
AGCAACTATCCATTCATTGA+AGG 0.510302 4_2:+65212765 None:intergenic
GGCAAAATGCTTTCATGCAC+GGG 0.511550 4_2:+65211192 None:intergenic
ATGATGCTCAGATTTGTTTG+TGG 0.513746 4_2:-65214752 Msa0615710:CDS
AATGAATGGATAGTTGCTAC+TGG 0.517233 4_2:-65212760 Msa0615710:CDS
TGATGGTGTGGGATCTTAGC+AGG 0.518950 4_2:-65212498 Msa0615710:intron
TGATCAGTATTTGCTTGTAT+GGG 0.519134 4_2:-65214522 Msa0615710:CDS
ACAACTACAATTGCGTAGAA+AGG 0.522646 4_2:+65211409 None:intergenic
ATGGAACCCATGTGAAGATT+GGG 0.525962 4_2:-65211622 Msa0615710:CDS
TTACAACTTCCATCAATTGG+AGG 0.527832 4_2:+65214864 None:intergenic
GATAGTTGCTACTGGTTCTA+CGG 0.527969 4_2:-65212752 Msa0615710:CDS
TTTCAATATGGTATGAGGTA+TGG 0.529152 4_2:-65211385 Msa0615710:three_prime_UTR
TTGTCTTGGTAGGAGACTGA+TGG 0.532965 4_2:-65212515 Msa0615710:CDS
TGAAGAAGTGAGGAAGTAGT+GGG 0.539371 4_2:-65215462 None:intergenic
TCATCACTCACGCTCTCGAA+TGG 0.541702 4_2:-65215244 Msa0615710:CDS
CTGAGTTCAATTACATTAAG+GGG 0.543271 4_2:+65211500 None:intergenic
GCAACTATCCATTCATTGAA+GGG 0.546007 4_2:+65212766 None:intergenic
AGGCAAAATGCTTTCATGCA+CGG 0.546627 4_2:+65211191 None:intergenic
TCACCAGAGGATGCTGAAGA+TGG 0.548104 4_2:-65211702 Msa0615710:CDS
GGACAAAACAGTGAAATTGT+GGG 0.548577 4_2:-65212731 Msa0615710:CDS
GGCCATCTCTCACCGTCGAA+TGG 0.548676 4_2:-65215223 Msa0615710:CDS
TACTAAGACGGTTAGTGCTG+AGG 0.555717 4_2:-65214922 Msa0615710:CDS
AGATTGGGTTGTTGCTAGTG+TGG 0.562356 4_2:-65211607 Msa0615710:CDS
ATTCAACAGATTAATCATGA+TGG 0.562715 4_2:-65214993 Msa0615710:CDS
GAAGTAGTGGGATAGAGAAG+GGG 0.568091 4_2:-65215450 Msa0615710:five_prime_UTR
GACGATCGTCCTGAAGTTGG+AGG 0.569228 4_2:-65215047 Msa0615710:CDS
GTATTTGTTTGGTTCTGTTG+GGG 0.571264 4_2:-65214546 Msa0615710:CDS
CAATTACCTCATGCTCGCAC+AGG 0.571545 4_2:-65215117 Msa0615710:CDS
TTAGGTTCATGAAGGTGTTG+TGG 0.572025 4_2:-65214597 Msa0615710:intron
AGTAACAGCACGAATACAGA+TGG 0.573291 4_2:+65211432 None:intergenic
GTTGAACCTGTGCGAGCATG+AGG 0.573425 4_2:+65215111 None:intergenic
GTCCTCTTAACCTCAAATCA+GGG 0.573483 4_2:+65214841 None:intergenic
GAAGTTGTAACCCTGATTTG+AGG 0.574752 4_2:-65214851 Msa0615710:CDS
AGCCATTCGACGGTGAGAGA+TGG 0.578728 4_2:+65215221 None:intergenic
TTGGTAGGAGACTGATGGTG+TGG 0.580867 4_2:-65212510 Msa0615710:CDS
AAGTAGTGGGATAGAGAAGG+GGG 0.585061 4_2:-65215449 Msa0615710:five_prime_UTR
CTGGCATATCATCTTCGTCA+TGG 0.595465 4_2:+65211538 None:intergenic
TTTCGGAAGTGTGGGTCCCG+AGG 0.597109 4_2:+65215147 None:intergenic
TCTTGGAGTAAGTTTAAACA+AGG 0.601573 4_2:-65214795 Msa0615710:CDS
CCAGATCGCACTGAACCCGC+CGG 0.601917 4_2:-65215197 Msa0615710:CDS
TGGTAGGAGACTGATGGTGT+GGG 0.611927 4_2:-65212509 Msa0615710:CDS
GATGACGAGATCGTAGAGGA+AGG 0.612226 4_2:+65215262 None:intergenic
ATGTTACTTATGGCAATCAA+AGG 0.614738 4_2:+65212678 None:intergenic
ACATGGGTTCCATGAGAAGT+CGG 0.616608 4_2:+65211632 None:intergenic
ACAGATTAATCATGATGGTG+AGG 0.616848 4_2:-65214988 Msa0615710:CDS
GCAACAACCCAATCTTCACA+TGG 0.617675 4_2:+65211615 None:intergenic
CATACTTCAAATATGGCAGA+TGG 0.618787 4_2:-65211574 Msa0615710:CDS
ACGATCGTCCTGAAGTTGGA+GGG 0.619003 4_2:-65215046 Msa0615710:CDS
CATTGCAGATTCAGCCACAT+CGG 0.621798 4_2:+65211231 None:intergenic
TGAAGGTGTTGTGGAAGATG+TGG 0.623313 4_2:-65214588 Msa0615710:CDS
TTAAGAGGACATAATACTGA+AGG 0.624264 4_2:-65214828 Msa0615710:CDS
GCAATCACAAAACTATTCTG+AGG 0.629163 4_2:+65214945 None:intergenic
ATGACGAGATCGTAGAGGAA+GGG 0.633340 4_2:+65215263 None:intergenic
TATGCCAGAACAGTCAGCAC+AGG 0.635935 4_2:-65211523 Msa0615710:CDS
GCGATCTGGAAGCCATTCGA+CGG 0.637412 4_2:+65215211 None:intergenic
AAAGAAGACGAAGAAATGAG+AGG 0.647955 4_2:-65215341 Msa0615710:CDS
GTGTTGTGGAAGATGTGGCT+TGG 0.652239 4_2:-65214583 Msa0615710:CDS
TTGCATTGCTCATTCAAGCG+AGG 0.660555 4_2:-65214462 Msa0615710:intron
TGAACAGGCTTAGTAACAGA+CGG 0.667956 4_2:+65214488 None:intergenic
TGACGAAGAGCAGTCACCAG+AGG 0.673679 4_2:-65211715 Msa0615710:CDS
ATGGTGAGGTTAATAGAGCG+AGG 0.684540 4_2:-65214974 Msa0615710:CDS
GAGTGATGACGAGATCGTAG+AGG 0.686206 4_2:+65215258 None:intergenic
CAACAACCCAATCTTCACAT+GGG 0.694803 4_2:+65211616 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATATAGAAAAATCTA+TGG + chr4_2:65213998-65214017 None:intergenic 10.0%
!! ATTTGTTTGTATATAATATA+TGG - chr4_2:65214598-65214617 Msa0615710:intron 10.0%
!! TTTGTTTGTATATAATATAT+GGG - chr4_2:65214599-65214618 Msa0615710:intron 10.0%
!!! TTTTATCTATGTTTAAATCT+AGG - chr4_2:65212215-65212234 Msa0615710:intron 15.0%
!!! TTTTACATTTGGTTTTTTTA+AGG - chr4_2:65212261-65212280 Msa0615710:intron 15.0%
!!! TTAATCTAGACAATTATTTT+TGG - chr4_2:65212363-65212382 Msa0615710:intron 15.0%
!!! TAGTTTTTTATGCTTTTTAT+AGG + chr4_2:65213203-65213222 None:intergenic 15.0%
!! TGATAATTGAAAATTAAACA+TGG - chr4_2:65213483-65213502 Msa0615710:intron 15.0%
!!! TTATAAGCTCTTTTTACATT+TGG - chr4_2:65212250-65212269 Msa0615710:intron 20.0%
!!! TAAGGAAGTATAATTAGTTT+AGG - chr4_2:65212279-65212298 Msa0615710:intron 20.0%
!!! AAGGAAGTATAATTAGTTTA+GGG - chr4_2:65212280-65212299 Msa0615710:intron 20.0%
!!! ATAATAAGCTCTTTTACATT+TGG - chr4_2:65212590-65212609 Msa0615710:intron 20.0%
!!! TAATAAGCTCTTTTACATTT+GGG - chr4_2:65212591-65212610 Msa0615710:intron 20.0%
!!! CGCTTAATTTATTTTCATAT+TGG + chr4_2:65212965-65212984 None:intergenic 20.0%
!!! TAATATCACTATGTTTTGAT+GGG + chr4_2:65213417-65213436 None:intergenic 20.0%
!!! TTTTCTTTATATAACGACAT+TGG - chr4_2:65213827-65213846 Msa0615710:intron 20.0%
!! TTAAAAAATTGACAATTGAG+AGG + chr4_2:65214340-65214359 None:intergenic 20.0%
!!! TTTTAACTTGAAACATTTGA+GGG + chr4_2:65214781-65214800 None:intergenic 20.0%
!!! ATTTTAACTTGAAACATTTG+AGG + chr4_2:65214782-65214801 None:intergenic 20.0%
!! ATTGTAGTTGTATTTCAATA+TGG - chr4_2:65215250-65215269 Msa0615710:CDS 20.0%
!!! TGAACATAATTCTGAAAAAT+TGG - chr4_2:65215301-65215320 Msa0615710:CDS 20.0%
! ATTCAACAGATTAATCATGA+TGG - chr4_2:65211654-65211673 Msa0615710:CDS 25.0%
! ATTTGTTTGTGGGATATTAA+TGG - chr4_2:65211906-65211925 Msa0615710:intron 25.0%
!! AGTATAATTAGTTTAGGGTT+TGG - chr4_2:65212285-65212304 Msa0615710:intron 25.0%
! ATTATCCAAAATAAACTCCT+AGG + chr4_2:65212575-65212594 None:intergenic 25.0%
!! AAGGAAGTATAATTAGTTCA+TGG - chr4_2:65212619-65212638 Msa0615710:intron 25.0%
! AGTATAATTAGTTCATGGTT+TGG - chr4_2:65212624-65212643 Msa0615710:intron 25.0%
! TTAATCTAGACAATTGTTTG+TGG - chr4_2:65212717-65212736 Msa0615710:CDS 25.0%
! TGAAAATAAATTAAGCGTGA+CGG - chr4_2:65212968-65212987 Msa0615710:intron 25.0%
! ACCTATAGTAGAAAAAATAG+TGG - chr4_2:65213075-65213094 Msa0615710:intron 25.0%
!!! TCCACTATTTTTTCTACTAT+AGG + chr4_2:65213079-65213098 None:intergenic 25.0%
!! TAGAAAAAATAGTGGAAACT+AGG - chr4_2:65213083-65213102 Msa0615710:intron 25.0%
! AAATCTTGAGATTAATGAGT+TGG - chr4_2:65213231-65213250 Msa0615710:intron 25.0%
!! TGAGTTGGATAGAAAAATAT+TGG - chr4_2:65213246-65213265 Msa0615710:intron 25.0%
!!! CTAATATCACTATGTTTTGA+TGG + chr4_2:65213418-65213437 None:intergenic 25.0%
!!! TTGATCTAGATTGTTGTTTT+CGG - chr4_2:65214044-65214063 Msa0615710:intron 25.0%
! AAAACTCAGTAAACATTTCA+GGG + chr4_2:65214233-65214252 None:intergenic 25.0%
! TAAATAATAAACCCAAAAGC+CGG - chr4_2:65214286-65214305 Msa0615710:intron 25.0%
!!! TTGTCAATTTTTTAACCTCA+TGG - chr4_2:65214345-65214364 Msa0615710:intron 25.0%
!!! TGTCAATTTTTTAACCTCAT+GGG - chr4_2:65214346-65214365 Msa0615710:intron 25.0%
! AACCTAATATAACTCAAGAA+AGG + chr4_2:65214422-65214441 None:intergenic 25.0%
! TGTATATAATATATGGGCTT+CGG - chr4_2:65214605-65214624 Msa0615710:intron 25.0%
! AACAACTAACTTCTAACATT+TGG + chr4_2:65214677-65214696 None:intergenic 25.0%
! AAATGTTAGAAGTTAGTTGT+TGG - chr4_2:65214676-65214695 Msa0615710:intron 25.0%
!!! TTTAACTTGAAACATTTGAG+GGG + chr4_2:65214780-65214799 None:intergenic 25.0%
! TCAAGTTAAAATGTCTAAAG+TGG - chr4_2:65214790-65214809 Msa0615710:CDS 25.0%
!! CAAGTTAAAATGTCTAAAGT+GGG - chr4_2:65214791-65214810 Msa0615710:CDS 25.0%
! AAGACAACATACTTCAAATA+TGG - chr4_2:65215066-65215085 Msa0615710:CDS 25.0%
! ACTGAGTTCAATTACATTAA+GGG + chr4_2:65215151-65215170 None:intergenic 25.0%
! AACTGAGTTCAATTACATTA+AGG + chr4_2:65215152-65215171 None:intergenic 25.0%
!! TGAAATATAGGTTGAATGTT+TGG - chr4_2:65215177-65215196 Msa0615710:CDS 25.0%
!! GAAATATAGGTTGAATGTTT+GGG - chr4_2:65215178-65215197 Msa0615710:CDS 25.0%
! TTGTATTTCAATATGGTATG+AGG - chr4_2:65215257-65215276 Msa0615710:CDS 25.0%
!!! ATGTGATGTTGTTTTTTCGA+GGG + chr4_2:65211253-65211272 None:intergenic 30.0%
!!! AATGTGATGTTGTTTTTTCG+AGG + chr4_2:65211254-65211273 None:intergenic 30.0%
TCAACGAAGAATACAAAATC+TGG - chr4_2:65211349-65211368 Msa0615710:three_prime_UTR 30.0%
! TTTTGTGATTGCTACTAAGA+CGG - chr4_2:65211713-65211732 Msa0615710:CDS 30.0%
TTAAGAGGACATAATACTGA+AGG - chr4_2:65211819-65211838 Msa0615710:intron 30.0%
TCTTGGAGTAAGTTTAAACA+AGG - chr4_2:65211852-65211871 Msa0615710:intron 30.0%
! TGATGCTCATCAGATTTTTA+AGG - chr4_2:65211950-65211969 Msa0615710:intron 30.0%
AACGAAAACATAAGTCGAAA+AGG + chr4_2:65211987-65212006 None:intergenic 30.0%
!!! TGTGTGGTTTTTTGTTTGTT+AGG - chr4_2:65212032-65212051 Msa0615710:intron 30.0%
! TTTGTTTGTTAGGTTCATGA+AGG - chr4_2:65212042-65212061 Msa0615710:intron 30.0%
!! AGTATTTGTTTGGTTCTGTT+GGG - chr4_2:65212100-65212119 Msa0615710:intron 30.0%
ATGATCAGTATTTGCTTGTA+TGG - chr4_2:65212124-65212143 Msa0615710:intron 30.0%
TGATCAGTATTTGCTTGTAT+GGG - chr4_2:65212125-65212144 Msa0615710:intron 30.0%
ATTTGCATCACATAAAGCAT+CGG + chr4_2:65212543-65212562 None:intergenic 30.0%
!! CTTTTACATTTGGGTTTTCA+AGG - chr4_2:65212600-65212619 Msa0615710:intron 30.0%
! TGAAAGTAGCAACTATTTTG+TGG - chr4_2:65212742-65212761 Msa0615710:CDS 30.0%
! ATTTTGTGGAAATTAGTGTG+AGG - chr4_2:65212756-65212775 Msa0615710:CDS 30.0%
! TTTTGTGGAAATTAGTGTGA+GGG - chr4_2:65212757-65212776 Msa0615710:CDS 30.0%
ATGTTAAGTGAACAGATACA+GGG - chr4_2:65212820-65212839 Msa0615710:intron 30.0%
!! AGTTGATGGGAAAATTTCAT+TGG - chr4_2:65212926-65212945 Msa0615710:intron 30.0%
TTGTGTTGAAAGACTTCATT+CGG - chr4_2:65213454-65213473 Msa0615710:intron 30.0%
TTGAAAATCTGAGTAAAGAC+AGG + chr4_2:65213631-65213650 None:intergenic 30.0%
! TAACGACATTGGATTTTGTT+AGG - chr4_2:65213838-65213857 Msa0615710:intron 30.0%
! ATTTTGTTAGGTTAACTGCT+TGG - chr4_2:65213850-65213869 Msa0615710:intron 30.0%
! ATGTTACTTATGGCAATCAA+AGG + chr4_2:65213972-65213991 None:intergenic 30.0%
! TCTATGGAGAATGTTACTTA+TGG + chr4_2:65213982-65214001 None:intergenic 30.0%
!!! TGATCTAGATTGTTGTTTTC+GGG - chr4_2:65214045-65214064 Msa0615710:intron 30.0%
CAAAACTCAGTAAACATTTC+AGG + chr4_2:65214234-65214253 None:intergenic 30.0%
! CTGAAATGTTTACTGAGTTT+TGG - chr4_2:65214232-65214251 Msa0615710:intron 30.0%
!! TTTACTGAGTTTTGGTATGT+TGG - chr4_2:65214240-65214259 Msa0615710:intron 30.0%
TAAGAGAAACTTTAATCCAG+TGG + chr4_2:65214317-65214336 None:intergenic 30.0%
ACTTAATTCGCTAAAAAGAG+TGG + chr4_2:65214384-65214403 None:intergenic 30.0%
!! ACTCTTTTTAGCGAATTAAG+TGG - chr4_2:65214383-65214402 Msa0615710:intron 30.0%
TGCCTTTCTTGAGTTATATT+AGG - chr4_2:65214417-65214436 Msa0615710:intron 30.0%
TAATGAGACTAATGGAGTAA+TGG - chr4_2:65214445-65214464 Msa0615710:intron 30.0%
TTAATATTTACTCCTTCGTC+CGG - chr4_2:65214700-65214719 Msa0615710:CDS 30.0%
! TTAACTTGAAACATTTGAGG+GGG + chr4_2:65214779-65214798 None:intergenic 30.0%
! TGTTGTTCACTCTTTTATGT+AGG - chr4_2:65214907-65214926 Msa0615710:CDS 30.0%
TGAATAAAAAGCAATTCTGG+TGG + chr4_2:65214972-65214991 None:intergenic 30.0%
CCATGAATAAAAAGCAATTC+TGG + chr4_2:65214975-65214994 None:intergenic 30.0%
!!! CCAGAATTGCTTTTTATTCA+TGG - chr4_2:65214972-65214991 Msa0615710:CDS 30.0%
!!! GAATTGCTTTTTATTCATGG+TGG - chr4_2:65214975-65214994 Msa0615710:CDS 30.0%
CTGAGTTCAATTACATTAAG+GGG + chr4_2:65215150-65215169 None:intergenic 30.0%
CTCAGTTTAGTGTGAAATAT+AGG - chr4_2:65215165-65215184 Msa0615710:CDS 30.0%
TTTCAATATGGTATGAGGTA+TGG - chr4_2:65215262-65215281 Msa0615710:CDS 30.0%
ACATCACATTTGAGAGAGTT+AGG - chr4_2:65211264-65211283 Msa0615710:three_prime_UTR 35.0%
CATCACATTTGAGAGAGTTA+GGG - chr4_2:65211265-65211284 Msa0615710:three_prime_UTR 35.0%
!!! TTAGGGTTTTGAAAGTGGAT+GGG - chr4_2:65211282-65211301 Msa0615710:three_prime_UTR 35.0%
AAAGAAGACGAAGAAATGAG+AGG - chr4_2:65211306-65211325 Msa0615710:three_prime_UTR 35.0%
! ACAGATTAATCATGATGGTG+AGG - chr4_2:65211659-65211678 Msa0615710:CDS 35.0%
GCAATCACAAAACTATTCTG+AGG + chr4_2:65211705-65211724 None:intergenic 35.0%
TTACAACTTCCATCAATTGG+AGG + chr4_2:65211786-65211805 None:intergenic 35.0%
GGACATAATACTGAAGGTTA+TGG - chr4_2:65211825-65211844 Msa0615710:intron 35.0%
AAACAAGGACATTTGCTTAG+TGG - chr4_2:65211867-65211886 Msa0615710:intron 35.0%
! ATGATGCTCAGATTTGTTTG+TGG - chr4_2:65211895-65211914 Msa0615710:intron 35.0%
! TGATGCTCAGATTTGTTTGT+GGG - chr4_2:65211896-65211915 Msa0615710:intron 35.0%
GCATCAAGAGACTTATTCTT+AGG + chr4_2:65211936-65211955 None:intergenic 35.0%
!! TATGTTTTCGTTGTTTTCGC+TGG - chr4_2:65211995-65212014 Msa0615710:intron 35.0%
TTGAGGCATGAGTATTTGTT+TGG - chr4_2:65212090-65212109 Msa0615710:intron 35.0%
!! GAGTATTTGTTTGGTTCTGT+TGG - chr4_2:65212099-65212118 Msa0615710:intron 35.0%
!! GTATTTGTTTGGTTCTGTTG+GGG - chr4_2:65212101-65212120 Msa0615710:intron 35.0%
! GAAAGTAGCAACCTATTTTG+TGG - chr4_2:65212389-65212408 Msa0615710:intron 35.0%
CGCACTAATTTCCACAAAAT+AGG + chr4_2:65212403-65212422 None:intergenic 35.0%
! ATTTTGTGGAAATTAGTGCG+AGG - chr4_2:65212403-65212422 Msa0615710:intron 35.0%
! TTTTGTGGAAATTAGTGCGA+GGG - chr4_2:65212404-65212423 Msa0615710:intron 35.0%
TGAATCTGTCAAAATGAGCA+TGG - chr4_2:65212432-65212451 Msa0615710:intron 35.0%
ATAACATGCACCATTCAAAC+TGG - chr4_2:65212494-65212513 Msa0615710:intron 35.0%
TTTCAACCATCCAGTTTGAA+TGG + chr4_2:65212507-65212526 None:intergenic 35.0%
TTCAAACTGGATGGTTGAAA+TGG - chr4_2:65212507-65212526 Msa0615710:CDS 35.0%
GCTTTATGTGATGCAAATGT+AGG - chr4_2:65212545-65212564 Msa0615710:CDS 35.0%
TATGTGATGCAAATGTAGGA+AGG - chr4_2:65212549-65212568 Msa0615710:CDS 35.0%
!!! TAGTTCATGGTTTGGTTTTG+TGG - chr4_2:65212632-65212651 Msa0615710:intron 35.0%
!!! AGTTCATGGTTTGGTTTTGT+GGG - chr4_2:65212633-65212652 Msa0615710:intron 35.0%
TGAATCTGTCAAAATGAGCA+TGG - chr4_2:65212432-65212451 Msa0615710:intron 35.0%
CTGTATCTGTTCACTTAACA+TGG + chr4_2:65212821-65212840 None:intergenic 35.0%
CATGTTAAGTGAACAGATAC+AGG - chr4_2:65212819-65212838 Msa0615710:intron 35.0%
CGCATCACATAAAATACTTG+AGG + chr4_2:65212893-65212912 None:intergenic 35.0%
!! AAAGTACTGCTCAAGTTGAT+GGG - chr4_2:65212913-65212932 Msa0615710:intron 35.0%
TGTAGTACACTAGACAAGAT+AGG - chr4_2:65213014-65213033 Msa0615710:intron 35.0%
! AAATAGTGGAAACTAGGCTT+AGG - chr4_2:65213089-65213108 Msa0615710:intron 35.0%
GAATTACTAGAGGTAGAAGA+AGG - chr4_2:65213177-65213196 Msa0615710:intron 35.0%
!!! TCACTATGTTTTGATGGGTT+GGG + chr4_2:65213412-65213431 None:intergenic 35.0%
!!! ATCACTATGTTTTGATGGGT+TGG + chr4_2:65213413-65213432 None:intergenic 35.0%
CATAGTGATATTAGACCGAA+AGG - chr4_2:65213424-65213443 Msa0615710:intron 35.0%
CAACACAATGTTGAACCTTT+CGG + chr4_2:65213442-65213461 None:intergenic 35.0%
TGTGTTGAAAGACTTCATTC+GGG - chr4_2:65213455-65213474 Msa0615710:intron 35.0%
CATCGTCAATATTTGAGAAC+TGG - chr4_2:65213526-65213545 Msa0615710:intron 35.0%
GTGGCTATATTTCACATATC+TGG - chr4_2:65213575-65213594 Msa0615710:intron 35.0%
AAAGTCGAATTAGAGCACAA+CGG + chr4_2:65213680-65213699 None:intergenic 35.0%
CTTTCAATCCCTTCAATGAA+TGG - chr4_2:65213873-65213892 Msa0615710:intron 35.0%
GCAACTATCCATTCATTGAA+GGG + chr4_2:65213884-65213903 None:intergenic 35.0%
AGCAACTATCCATTCATTGA+AGG + chr4_2:65213885-65213904 None:intergenic 35.0%
AATGAATGGATAGTTGCTAC+TGG - chr4_2:65213887-65213906 Msa0615710:intron 35.0%
GGACAAAACAGTGAAATTGT+GGG - chr4_2:65213916-65213935 Msa0615710:intron 35.0%
!!! ATTGTTGTTTTCGGGTTAAC+AGG - chr4_2:65214053-65214072 Msa0615710:intron 35.0%
!!! TTGTTGTTTTCGGGTTAACA+GGG - chr4_2:65214054-65214073 Msa0615710:intron 35.0%
CCAAGACAGTTTCATTCTTT+GGG + chr4_2:65214105-65214124 None:intergenic 35.0%
!! AATGAAAGCATCACCATATC+TGG - chr4_2:65214180-65214199 Msa0615710:intron 35.0%
TTCACTAGAAAGTCCAGATA+TGG + chr4_2:65214196-65214215 None:intergenic 35.0%
AGAAACTTTAATCCAGTGGA+AGG + chr4_2:65214313-65214332 None:intergenic 35.0%
AGGTTCTGTAATGAGACTAA+TGG - chr4_2:65214437-65214456 Msa0615710:intron 35.0%
ACATCAAAGTCCAAAGATCA+GGG + chr4_2:65214526-65214545 None:intergenic 35.0%
TACATCAAAGTCCAAAGATC+AGG + chr4_2:65214527-65214546 None:intergenic 35.0%
!!! CACCGACTTTTGTTATAGAT+GGG - chr4_2:65214548-65214567 Msa0615710:CDS 35.0%
!! ACCGACTTTTGTTATAGATG+GGG - chr4_2:65214549-65214568 Msa0615710:CDS 35.0%
ACCCCATCTATAACAAAAGT+CGG + chr4_2:65214553-65214572 None:intergenic 35.0%
! AATCAACAGAAGCATGCAAT+TGG + chr4_2:65214577-65214596 None:intergenic 35.0%
TAATATTTACTCCTTCGTCC+GGG - chr4_2:65214701-65214720 Msa0615710:CDS 35.0%
CATACTTCAAATATGGCAGA+TGG - chr4_2:65215073-65215092 Msa0615710:CDS 35.0%
ACAACTACAATTGCGTAGAA+AGG + chr4_2:65215241-65215260 None:intergenic 35.0%
!!! GAGAGTTAGGGTTTTGAAAG+TGG - chr4_2:65211277-65211296 Msa0615710:three_prime_UTR 40.0%
!!! GTTAGGGTTTTGAAAGTGGA+TGG - chr4_2:65211281-65211300 Msa0615710:three_prime_UTR 40.0%
!!! TAGGGTTTTGAAAGTGGATG+GGG - chr4_2:65211283-65211302 Msa0615710:three_prime_UTR 40.0%
! TTGGACGGAGTAATCTTTTC+CGG + chr4_2:65211472-65211491 None:intergenic 40.0%
! GAGGTAATTGGGTTCGTTTT+CGG + chr4_2:65211520-65211539 None:intergenic 40.0%
GGGTTACAACTTCCATCAAT+TGG + chr4_2:65211789-65211808 None:intergenic 40.0%
! GAAGTTGTAACCCTGATTTG+AGG - chr4_2:65211796-65211815 Msa0615710:intron 40.0%
! AACCCTGATTTGAGGTTAAG+AGG - chr4_2:65211804-65211823 Msa0615710:intron 40.0%
GTCCTCTTAACCTCAAATCA+GGG + chr4_2:65211809-65211828 None:intergenic 40.0%
TGTCCTCTTAACCTCAAATC+AGG + chr4_2:65211810-65211829 None:intergenic 40.0%
! CTGAAGGTTATGGTTTGTCT+TGG - chr4_2:65211835-65211854 Msa0615710:intron 40.0%
!!! GGATTGTTGGTGATTTTGTG+TGG - chr4_2:65212016-65212035 Msa0615710:intron 40.0%
!! TTAGGTTCATGAAGGTGTTG+TGG - chr4_2:65212050-65212069 Msa0615710:intron 40.0%
TGAACAGGCTTAGTAACAGA+CGG + chr4_2:65212162-65212181 None:intergenic 40.0%
! GAAGGCCTAGGAGTTTATTT+TGG - chr4_2:65212567-65212586 Msa0615710:CDS 40.0%
TGGAAATTAGTGTGAGGGAT+TGG - chr4_2:65212762-65212781 Msa0615710:CDS 40.0%
TGTCAAAATGAGCATGGCAT+GGG - chr4_2:65212791-65212810 Msa0615710:intron 40.0%
TGGGTGGTTGAAATGGAATA+GGG - chr4_2:65212867-65212886 Msa0615710:intron 40.0%
!! GAAAGTACTGCTCAAGTTGA+TGG - chr4_2:65212912-65212931 Msa0615710:intron 40.0%
! AAATTAAGCGTGACGGAGAT+AGG - chr4_2:65212975-65212994 Msa0615710:intron 40.0%
! AATTAAGCGTGACGGAGATA+GGG - chr4_2:65212976-65212995 Msa0615710:intron 40.0%
ACAACATTTGAGAGAGAGCT+GGG - chr4_2:65213047-65213066 Msa0615710:intron 40.0%
AAACTAGGCTTAGGTGGTTT+GGG - chr4_2:65213098-65213117 Msa0615710:intron 40.0%
CTGATCTATTGTCCTTACGA+CGG + chr4_2:65213149-65213168 None:intergenic 40.0%
CGTAAGGACAATAGATCAGA+TGG - chr4_2:65213150-65213169 Msa0615710:intron 40.0%
AAGGACAATAGATCAGATGG+AGG - chr4_2:65213153-65213172 Msa0615710:intron 40.0%
AGATGGAGGAGAATTACTAG+AGG - chr4_2:65213167-65213186 Msa0615710:intron 40.0%
GTGTTGAAAGACTTCATTCG+GGG - chr4_2:65213456-65213475 Msa0615710:intron 40.0%
!! GATAGTTGCTACTGGTTCTA+CGG - chr4_2:65213895-65213914 Msa0615710:intron 40.0%
CGGACAAAACAGTGAAATTG+TGG - chr4_2:65213915-65213934 Msa0615710:intron 40.0%
CCCAAAGAATGAAACTGTCT+TGG - chr4_2:65214102-65214121 Msa0615710:intron 40.0%
GCCAAGACAGTTTCATTCTT+TGG + chr4_2:65214106-65214125 None:intergenic 40.0%
!! ACTGAGTTTTGGTATGTTGG+TGG - chr4_2:65214243-65214262 Msa0615710:intron 40.0%
GGAACTTTAATTCACCCATG+AGG + chr4_2:65214363-65214382 None:intergenic 40.0%
CATCAAAGTCCAAAGATCAG+GGG + chr4_2:65214525-65214544 None:intergenic 40.0%
!!! GCACCGACTTTTGTTATAGA+TGG - chr4_2:65214547-65214566 Msa0615710:CDS 40.0%
GCAAAATATCCGACTTCTCA+TGG - chr4_2:65215006-65215025 Msa0615710:CDS 40.0%
ATGGAACCCATGTGAAGATT+GGG - chr4_2:65215025-65215044 Msa0615710:CDS 40.0%
CAACAACCCAATCTTCACAT+GGG + chr4_2:65215034-65215053 None:intergenic 40.0%
AGGTTGAATGTTTGGGTCTA+AGG - chr4_2:65215185-65215204 Msa0615710:CDS 40.0%
AGTAACAGCACGAATACAGA+TGG + chr4_2:65215218-65215237 None:intergenic 40.0%
TTGTTATGCGTCGAGTCATT+AGG - chr4_2:65215338-65215357 Msa0615710:CDS 40.0%
! TTCAGCCACATCGGTTAAAA+GGG + chr4_2:65215410-65215429 None:intergenic 40.0%
! ATTCAGCCACATCGGTTAAA+AGG + chr4_2:65215411-65215430 None:intergenic 40.0%
! AGGAAGTAGTGGGATAGAGA+AGG - chr4_2:65211195-65211214 Msa0615710:three_prime_UTR 45.0%
! GGAAGTAGTGGGATAGAGAA+GGG - chr4_2:65211196-65211215 Msa0615710:three_prime_UTR 45.0%
! GAAGTAGTGGGATAGAGAAG+GGG - chr4_2:65211197-65211216 Msa0615710:three_prime_UTR 45.0%
! AAGTAGTGGGATAGAGAAGG+GGG - chr4_2:65211198-65211217 Msa0615710:three_prime_UTR 45.0%
ATGACGAGATCGTAGAGGAA+GGG + chr4_2:65211387-65211406 None:intergenic 45.0%
TCCGTCCAAAAACTCATCCT+CGG - chr4_2:65211483-65211502 Msa0615710:three_prime_UTR 45.0%
TGTGCGAGCATGAGGTAATT+GGG + chr4_2:65211531-65211550 None:intergenic 45.0%
!! GTAATGACGAGCGTCGTTTT+CGG + chr4_2:65211577-65211596 None:intergenic 45.0%
ATGGTGAGGTTAATAGAGCG+AGG - chr4_2:65211673-65211692 Msa0615710:CDS 45.0%
TACTAAGACGGTTAGTGCTG+AGG - chr4_2:65211725-65211744 Msa0615710:intron 45.0%
CCATCAATTGGAGGCTTAGA+AGG + chr4_2:65211777-65211796 None:intergenic 45.0%
CCTTCTAAGCCTCCAATTGA+TGG - chr4_2:65211774-65211793 Msa0615710:intron 45.0%
!! CGTTGTTTTCGCTGGATTGT+TGG - chr4_2:65212003-65212022 Msa0615710:intron 45.0%
!! TGAAGGTGTTGTGGAAGATG+TGG - chr4_2:65212059-65212078 Msa0615710:intron 45.0%
! AAGATGTGGCTTGGCATTTG+AGG - chr4_2:65212073-65212092 Msa0615710:intron 45.0%
TGAGCAATGCAAGACTGAAC+AGG + chr4_2:65212177-65212196 None:intergenic 45.0%
TTGCATTGCTCATTCAAGCG+AGG - chr4_2:65212185-65212204 Msa0615710:intron 45.0%
TGGAAATTAGTGCGAGGGAT+TGG - chr4_2:65212409-65212428 Msa0615710:intron 45.0%
TGTCAAAATGAGCATGGCCT+GGG - chr4_2:65212438-65212457 Msa0615710:intron 45.0%
ACGTGCTAGGTGGAAAGATA+CGG - chr4_2:65212465-65212484 Msa0615710:intron 45.0%
CATGCACCATTCAAACTGGA+TGG - chr4_2:65212498-65212517 Msa0615710:intron 45.0%
TGGATGGTTGAAATGGAGCA+GGG - chr4_2:65212514-65212533 Msa0615710:CDS 45.0%
!! TGCATCACATAAAGCATCGG+AGG + chr4_2:65212540-65212559 None:intergenic 45.0%
ATGCAAATGTAGGAAGGCCT+AGG - chr4_2:65212555-65212574 Msa0615710:CDS 45.0%
CTGTCAAAATGAGCATGGCA+TGG - chr4_2:65212790-65212809 Msa0615710:CDS 45.0%
GTCAAAATGAGCATGGCATG+GGG - chr4_2:65212792-65212811 Msa0615710:intron 45.0%
TAAACACGCACCATTCAAGC+TGG - chr4_2:65212847-65212866 Msa0615710:intron 45.0%
AAACACGCACCATTCAAGCT+GGG - chr4_2:65212848-65212867 Msa0615710:intron 45.0%
TTTCAACCACCCAGCTTGAA+TGG + chr4_2:65212860-65212879 None:intergenic 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG - chr4_2:65212860-65212879 Msa0615710:intron 45.0%
CTGGGTGGTTGAAATGGAAT+AGG - chr4_2:65212866-65212885 Msa0615710:intron 45.0%
GACAACATTTGAGAGAGAGC+TGG - chr4_2:65213046-65213065 Msa0615710:intron 45.0%
CAACATTTGAGAGAGAGCTG+GGG - chr4_2:65213048-65213067 Msa0615710:intron 45.0%
TAGTGGAAACTAGGCTTAGG+TGG - chr4_2:65213092-65213111 Msa0615710:intron 45.0%
GAAACTAGGCTTAGGTGGTT+TGG - chr4_2:65213097-65213116 Msa0615710:intron 45.0%
TTGAAAGACTTCATTCGGGG+TGG - chr4_2:65213459-65213478 Msa0615710:intron 45.0%
TGAAAGACTTCATTCGGGGT+GGG - chr4_2:65213460-65213479 Msa0615710:intron 45.0%
GACAGGAAATTCTATCAGCG+AGG + chr4_2:65213614-65213633 None:intergenic 45.0%
!!! TTGTTTTCGGGTTAACAGGG+AGG - chr4_2:65214057-65214076 Msa0615710:intron 45.0%
! GTCTTGGCTTCTTGTTGTCT+TGG - chr4_2:65214118-65214137 Msa0615710:intron 45.0%
! TGGCTTCTTGTTGTCTTGGT+AGG - chr4_2:65214122-65214141 Msa0615710:intron 45.0%
TTGTCTTGGTAGGAGACTGA+TGG - chr4_2:65214132-65214151 Msa0615710:intron 45.0%
CTTTAATCCAGTGGAAGGAC+CGG + chr4_2:65214308-65214327 None:intergenic 45.0%
!! AGCTCAACTGGTTTGAGCTA+CGG + chr4_2:65214750-65214769 None:intergenic 45.0%
CTTGAAACATTTGAGGGGGT+TGG + chr4_2:65214775-65214794 None:intergenic 45.0%
ACATGGGTTCCATGAGAAGT+CGG + chr4_2:65215018-65215037 None:intergenic 45.0%
CATGGAACCCATGTGAAGAT+TGG - chr4_2:65215024-65215043 Msa0615710:CDS 45.0%
GCAACAACCCAATCTTCACA+TGG + chr4_2:65215035-65215054 None:intergenic 45.0%
! AGATTGGGTTGTTGCTAGTG+TGG - chr4_2:65215040-65215059 Msa0615710:CDS 45.0%
CTGGCATATCATCTTCGTCA+TGG + chr4_2:65215112-65215131 None:intergenic 45.0%
! CAGATCCCTTTTAACCGATG+TGG - chr4_2:65215402-65215421 Msa0615710:five_prime_UTR 45.0%
CATTGCAGATTCAGCCACAT+CGG + chr4_2:65215419-65215438 None:intergenic 45.0%
GGCAAAATGCTTTCATGCAC+GGG + chr4_2:65215458-65215477 None:intergenic 45.0%
GATGACGAGATCGTAGAGGA+AGG + chr4_2:65211388-65211407 None:intergenic 50.0%
! GAGTGATGACGAGATCGTAG+AGG + chr4_2:65211392-65211411 None:intergenic 50.0%
TCATCACTCACGCTCTCGAA+TGG - chr4_2:65211403-65211422 Msa0615710:three_prime_UTR 50.0%
! ACGGAGTAATCTTTTCCGGC+GGG + chr4_2:65211468-65211487 None:intergenic 50.0%
! GACGGAGTAATCTTTTCCGG+CGG + chr4_2:65211469-65211488 None:intergenic 50.0%
!! CCCGAGGATGAGTTTTTGGA+CGG + chr4_2:65211487-65211506 None:intergenic 50.0%
CCGTCCAAAAACTCATCCTC+GGG - chr4_2:65211484-65211503 Msa0615710:three_prime_UTR 50.0%
!! GGGTTCGTTTTCGGAAGTGT+GGG + chr4_2:65211511-65211530 None:intergenic 50.0%
! TGGGTTCGTTTTCGGAAGTG+TGG + chr4_2:65211512-65211531 None:intergenic 50.0%
CTGTGCGAGCATGAGGTAAT+TGG + chr4_2:65211532-65211551 None:intergenic 50.0%
CAATTACCTCATGCTCGCAC+AGG - chr4_2:65211530-65211549 Msa0615710:CDS 50.0%
GATGACGATCGTCCTGAAGT+TGG - chr4_2:65211597-65211616 Msa0615710:CDS 50.0%
ACGATCGTCCTGAAGTTGGA+GGG - chr4_2:65211601-65211620 Msa0615710:CDS 50.0%
CAACCAAACCCTCCAACTTC+AGG + chr4_2:65211612-65211631 None:intergenic 50.0%
! GAGGGTTTGGTTGTGCGAAT+GGG - chr4_2:65211619-65211638 Msa0615710:CDS 50.0%
GTGTTGTGGAAGATGTGGCT+TGG - chr4_2:65212064-65212083 Msa0615710:intron 50.0%
CTGTCAAAATGAGCATGGCC+TGG - chr4_2:65212437-65212456 Msa0615710:intron 50.0%
GTCAAAATGAGCATGGCCTG+GGG - chr4_2:65212439-65212458 Msa0615710:intron 50.0%
CTGGATGGTTGAAATGGAGC+AGG - chr4_2:65212513-65212532 Msa0615710:CDS 50.0%
CGGAGATAGGGATGTTGTGT+TGG - chr4_2:65212988-65213007 Msa0615710:intron 50.0%
GACATGTGCATTCCGTCGTA+AGG - chr4_2:65213134-65213153 Msa0615710:intron 50.0%
ACAACTGCAGAGTGGAGTCA+TGG + chr4_2:65213552-65213571 None:intergenic 50.0%
TCCACTCTGCAGTTGTACAG+TGG - chr4_2:65213556-65213575 Msa0615710:intron 50.0%
TTGTGGGATCTGCGCAAGAT+TGG - chr4_2:65213932-65213951 Msa0615710:intron 50.0%
!!! TTTTCGGGTTAACAGGGAGG+AGG - chr4_2:65214060-65214079 Msa0615710:intron 50.0%
! TAACAGGGAGGAGGTTTTCC+AGG - chr4_2:65214069-65214088 Msa0615710:intron 50.0%
! TTGGTAGGAGACTGATGGTG+TGG - chr4_2:65214137-65214156 Msa0615710:intron 50.0%
! TGGTAGGAGACTGATGGTGT+GGG - chr4_2:65214138-65214157 Msa0615710:intron 50.0%
! TGATGGTGTGGGATCTTAGC+AGG - chr4_2:65214149-65214168 Msa0615710:intron 50.0%
GTCCAAAGATCAGGGGACAT+GGG + chr4_2:65214518-65214537 None:intergenic 50.0%
AGTCCAAAGATCAGGGGACA+TGG + chr4_2:65214519-65214538 None:intergenic 50.0%
! CTACGGGATAACGAGGCATT+GGG + chr4_2:65214733-65214752 None:intergenic 50.0%
GTTTGAGCTACGGGATAACG+AGG + chr4_2:65214740-65214759 None:intergenic 50.0%
!! GCTCAACTGGTTTGAGCTAC+GGG + chr4_2:65214749-65214768 None:intergenic 50.0%
TCACCAGAGGATGCTGAAGA+TGG - chr4_2:65214945-65214964 Msa0615710:CDS 50.0%
TATGCCAGAACAGTCAGCAC+AGG - chr4_2:65215124-65215143 Msa0615710:CDS 50.0%
AGCCATTCGACGGTGAGAGA+TGG + chr4_2:65211429-65211448 None:intergenic 55.0%
GCGATCTGGAAGCCATTCGA+CGG + chr4_2:65211439-65211458 None:intergenic 55.0%
! GGGTCCCGAGGATGAGTTTT+TGG + chr4_2:65211491-65211510 None:intergenic 55.0%
GTTGAACCTGTGCGAGCATG+AGG + chr4_2:65211539-65211558 None:intergenic 55.0%
! CGTTTTCGGAGTCGTCGAGA+GGG + chr4_2:65211563-65211582 None:intergenic 55.0%
! TCGTTTTCGGAGTCGTCGAG+AGG + chr4_2:65211564-65211583 None:intergenic 55.0%
GACGATCGTCCTGAAGTTGG+AGG - chr4_2:65211600-65211619 Msa0615710:CDS 55.0%
CGTCCTGAAGTTGGAGGGTT+TGG - chr4_2:65211606-65211625 Msa0615710:CDS 55.0%
! GGAGGGTTTGGTTGTGCGAA+TGG - chr4_2:65211618-65211637 Msa0615710:CDS 55.0%
GCCACTGTACAACTGCAGAG+TGG + chr4_2:65213560-65213579 None:intergenic 55.0%
! AGGGAGGAGGTTTTCCAGGT+TGG - chr4_2:65214073-65214092 Msa0615710:intron 55.0%
!! AGGAGGTTTTCCAGGTTGGC+TGG - chr4_2:65214077-65214096 Msa0615710:intron 55.0%
! TCTTTGGGTTCCAGCCAACC+TGG + chr4_2:65214090-65214109 None:intergenic 55.0%
!! CAGTGGAAGGACCGGCTTTT+GGG + chr4_2:65214300-65214319 None:intergenic 55.0%
CACCCATGTCCCCTGATCTT+TGG - chr4_2:65214513-65214532 Msa0615710:CDS 55.0%
TTGGGTTCAAACCCGGACGA+AGG + chr4_2:65214715-65214734 None:intergenic 55.0%
!! CGAGGCATTGGGTTCAAACC+CGG + chr4_2:65214722-65214741 None:intergenic 55.0%
GCTACGGGATAACGAGGCAT+TGG + chr4_2:65214734-65214753 None:intergenic 55.0%
AGGGGGTTGGATAGCTCAAC+TGG + chr4_2:65214762-65214781 None:intergenic 55.0%
TGACGAAGAGCAGTCACCAG+AGG - chr4_2:65214932-65214951 Msa0615710:CDS 55.0%
GGACCATCTTCAGCATCCTC+TGG + chr4_2:65214951-65214970 None:intergenic 55.0%
GGCCATCTCTCACCGTCGAA+TGG - chr4_2:65211424-65211443 Msa0615710:three_prime_UTR 60.0%
! TTTCGGAAGTGTGGGTCCCG+AGG + chr4_2:65211503-65211522 None:intergenic 60.0%
TGGCCTGGGGATAACGTGCT+AGG - chr4_2:65212452-65212471 Msa0615710:intron 60.0%
CCACCTAGCACGTTATCCCC+AGG + chr4_2:65212458-65212477 None:intergenic 60.0%
CCTGGGGATAACGTGCTAGG+TGG - chr4_2:65212455-65212474 Msa0615710:intron 60.0%
CACGCACCATTCAAGCTGGG+TGG - chr4_2:65212851-65212870 Msa0615710:intron 60.0%
!! CCAGTGGAAGGACCGGCTTT+TGG + chr4_2:65214301-65214320 None:intergenic 60.0%
CCAAAAGCCGGTCCTTCCAC+TGG - chr4_2:65214298-65214317 Msa0615710:intron 60.0%
CCAGATCGCACTGAACCCGC+CGG - chr4_2:65211450-65211469 Msa0615710:three_prime_UTR 65.0%
!! GGGGCCTGTGCTGACTGTTC+TGG + chr4_2:65215131-65215150 None:intergenic 65.0%
! CCGGCGGGTTCAGTGCGATC+TGG + chr4_2:65211453-65211472 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 65211192 65215477 65211192 ID=Msa0615710;Name=Msa0615710
chr4_2 mRNA 65211192 65215477 65211192 ID=Msa0615710-mRNA-1;Parent=Msa0615710;Name=Msa0615710-mRNA-1;_AED=0.04;_eAED=0.04;_QI=108|1|1|1|1|1|5|323|423
chr4_2 exon 65211192 65211740 65211192 ID=Msa0615710-mRNA-1:exon:18445;Parent=Msa0615710-mRNA-1
chr4_2 exon 65212499 65212594 65212499 ID=Msa0615710-mRNA-1:exon:18444;Parent=Msa0615710-mRNA-1
chr4_2 exon 65212685 65212809 65212685 ID=Msa0615710-mRNA-1:exon:18443;Parent=Msa0615710-mRNA-1
chr4_2 exon 65214463 65214615 65214463 ID=Msa0615710-mRNA-1:exon:18442;Parent=Msa0615710-mRNA-1
chr4_2 exon 65214698 65215477 65214698 ID=Msa0615710-mRNA-1:exon:18441;Parent=Msa0615710-mRNA-1
chr4_2 five_prime_UTR 65215370 65215477 65215370 ID=Msa0615710-mRNA-1:five_prime_utr;Parent=Msa0615710-mRNA-1
chr4_2 CDS 65214698 65215369 65214698 ID=Msa0615710-mRNA-1:cds;Parent=Msa0615710-mRNA-1
chr4_2 CDS 65214463 65214615 65214463 ID=Msa0615710-mRNA-1:cds;Parent=Msa0615710-mRNA-1
chr4_2 CDS 65212685 65212809 65212685 ID=Msa0615710-mRNA-1:cds;Parent=Msa0615710-mRNA-1
chr4_2 CDS 65212499 65212594 65212499 ID=Msa0615710-mRNA-1:cds;Parent=Msa0615710-mRNA-1
chr4_2 CDS 65211515 65211740 65211515 ID=Msa0615710-mRNA-1:cds;Parent=Msa0615710-mRNA-1
chr4_2 three_prime_UTR 65211192 65211514 65211192 ID=Msa0615710-mRNA-1:three_prime_utr;Parent=Msa0615710-mRNA-1
Gene Sequence

>Msa0615710

ATGGGGAAAGAAGACGAAGAAATGAGAGGCGAAATAGAAGAACGAATAATCAACGAAGAATACAAAATCTGGAAGAAAAACAGTCCCTTCCTCTACGATCTCGTCATCACTCACGCTCTCGAATGGCCATCTCTCACCGTCGAATGGCTTCCAGATCGCACTGAACCCGCCGGAAAAGATTACTCCGTCCAAAAACTCATCCTCGGGACCCACACTTCCGAAAACGAACCCAATTACCTCATGCTCGCACAGGTTCAACTCCCTCTCGACGACTCCGAAAACGACGCTCGTCATTACGATGACGATCGTCCTGAAGTTGGAGGGTTTGGTTGTGCGAATGGGAAAGTTCAGATAATTCAACAGATTAATCATGATGGTGAGGTTAATAGAGCGAGGTATATGCCTCAGAATAGTTTTGTGATTGCTACTAAGACGGTTAGTGCTGAGGTTTATGTGTTTGATTATAGTAAACATCCTTCTAAGCCTCCAATTGATGGAAGTTGTAACCCTGATTTGAGGTTAAGAGGACATAATACTGAAGGTTATGGTTTGTCTTGGAGTAAGTTTAAACAAGGACATTTGCTTAGTGGTTCTGATGATGCTCAGATTTGTTTGTGGGATATTAATGGTACTCCTAAGAATAAGTCTCTTGATGCTCATCAGATTTTTAAGGTTCATGAAGGTGTTGTGGAAGATGTGGCTTGGCATTTGAGGCATGAGTATTTGTTTGGTTCTGTTGGGGATGATCAGTATTTGCTTGTATGGGATCTGAGAACACCGTCTGTTACTAAGCCTGTTCAGTCTTGCATTGCTCATTCAAGCGAGGTTAACTGCTTGGCTTTCAATCCCTTCAATGAATGGATAGTTGCTACTGGTTCTACGGACAAAACAGTGAAATTGTGGGATCTGCGCAAGATTGGCAATGTTCTTCACACCTTTGATTGCCATAAGGAGGAGGTTTTCCAGGTTGGCTGGAACCCAAAGAATGAAACTGTCTTGGCTTCTTGTTGTCTTGGTAGGAGACTGATGGTGTGGGATCTTAGCAGGATTGACGAAGAGCAGTCACCAGAGGATGCTGAAGATGGTCCACCAGAATTGCTTTTTATTCATGGTGGTCATACAAGCAAAATATCCGACTTCTCATGGAACCCATGTGAAGATTGGGTTGTTGCTAGTGTGGCTGAAGACAACATACTTCAAATATGGCAGATGGCAGAGAACATTTACCATGACGAAGATGATATGCCAGAACAGTCAGCACAGGCCCCTTAA

Protein sequence

>Msa0615710

MGKEDEEMRGEIEERIINEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRTEPAGKDYSVQKLILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRPEVGGFGCANGKVQIIQQINHDGEVNRARYMPQNSFVIATKTVSAEVYVFDYSKHPSKPPIDGSCNPDLRLRGHNTEGYGLSWSKFKQGHLLSGSDDAQICLWDINGTPKNKSLDAHQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLVWDLRTPSVTKPVQSCIAHSSEVNCLAFNPFNEWIVATGSTDKTVKLWDLRKIGNVLHTFDCHKEEVFQVGWNPKNETVLASCCLGRRLMVWDLSRIDEEQSPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDMPEQSAQAP*