AlfalfaGEDB | Msa0969730

M. sativa cultivar zhongmu-4 / Msa0969730

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969730	XP_024641846.2	99.716	352	1	0	1	352	1	352	0.0	735

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969730	sp\|Q9ZQ31\|STY13_ARATH	44.326	282	138	7	11	286	116	384	4.54e-74	238

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969730	A0A396HEF6	99.716	352	1	0	1	352	1	352	0.0	735

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0969730	0.814952	1.185098e-51	-8.615850e-47
Msa0006110	Msa0969730	0.813861	2.065630e-51	-8.615850e-47
Msa0007990	Msa0969730	0.817376	3.404433e-52	-8.615850e-47
Msa0010110	Msa0969730	0.807725	4.392649e-50	-8.615850e-47
Msa0011170	Msa0969730	0.818954	1.497022e-52	-8.615850e-47
Msa0027890	Msa0969730	0.834845	2.367821e-56	-8.615850e-47
Msa0031990	Msa0969730	-0.842005	3.367229e-58	-8.615850e-47
Msa0032470	Msa0969730	0.802437	5.613964e-49	-8.615850e-47
Msa0037880	Msa0969730	0.813862	2.065129e-51	-8.615850e-47
Msa0043980	Msa0969730	0.849227	3.702996e-60	-8.615850e-47

Showing 1 to 10 of 380 entries

Previous1 2 3 4 5…38Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969730	MtrunA17_Chr6g0449241	99.716	352	1	0	1	352	1	352	0.0	735
Msa0969730	MtrunA17_Chr3g0116981	78.125	352	77	0	1	352	1	352	0.0	593
Msa0969730	MtrunA17_Chr7g0244621	67.354	291	94	1	3	292	22	312	2.57e-147	420
Msa0969730	MtrunA17_Chr4g0059121	43.046	302	160	6	14	312	46	338	8.93e-80	248
Msa0969730	MtrunA17_Chr3g0090261	44.718	284	138	7	9	286	66	336	2.24e-77	242
Msa0969730	MtrunA17_Chr3g0117731	43.431	274	143	5	16	286	47	311	5.26e-75	235
Msa0969730	MtrunA17_Chr2g0282321	41.135	282	152	5	18	294	153	425	6.76e-75	238
Msa0969730	MtrunA17_Chr4g0075541	43.234	303	150	7	18	312	79	367	1.73e-74	235
Msa0969730	MtrunA17_Chr4g0047201	39.716	282	156	5	18	294	192	464	6.39e-74	237
Msa0969730	MtrunA17_Chr4g0047191	38.144	291	166	5	18	303	36	317	1.90e-73	231

Showing 1 to 10 of 501 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0969730	AT3G27560.1	78.151	357	70	3	1	351	1	355	0.0	573
Msa0969730	AT5G50180.1	77.326	344	78	0	9	352	3	346	0.0	573
Msa0969730	AT5G40540.1	77.778	351	75	2	1	348	1	351	0.0	568
Msa0969730	AT5G40540.2	81.455	275	48	2	77	348	1	275	4.22e-163	457
Msa0969730	AT5G40540.4	83.065	248	42	0	1	248	1	248	5.83e-158	444
Msa0969730	AT5G40540.3	80.709	254	46	2	98	348	1	254	8.26e-147	415
Msa0969730	AT5G01850.1	69.597	273	82	1	15	286	7	279	1.55e-143	409
Msa0969730	AT5G01850.2	63.973	297	82	2	15	286	7	303	7.26e-138	396
Msa0969730	AT5G66710.1	53.357	283	129	3	13	294	58	338	4.32e-104	312
Msa0969730	AT3G50720.1	46.975	281	146	3	3	282	25	303	5.11e-89	272

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 126 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAGGTGAAGGCTTT+TGG	0.239242	6_4:-1159760	None:intergenic
AAACTCCAGAAGAGATTTCA+AGG	0.490779	6_4:+1156921	Msa0969730:CDS
AAAGATGAAGAAAAGAAAGA+AGG	0.508913	6_4:-1155647	None:intergenic
AAAGTGCTTGGATATGCGTG+TGG	0.704064	6_4:+1157259	Msa0969730:CDS
AAATCATACAGATGCTCCTT+CGG	0.494850	6_4:+1159292	Msa0969730:CDS
AAATGGTAGAGAGATACCGA+AGG	0.694007	6_4:-1159308	None:intergenic
AACATTAATGCACTTGTACC+AGG	0.546040	6_4:-1159399	None:intergenic
AACCATCACAGGTTCTTTAC+AGG	0.285819	6_4:-1157177	None:intergenic
AACCGGTTCTAATGGCGAAA+TGG	0.471939	6_4:-1159325	None:intergenic
AACGGGAACATATCGTTGGA+TGG	0.612075	6_4:+1158187	Msa0969730:CDS

Showing 1 to 10 of 126 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAAACTTATCCCAAAAATCA+CGG	-	chr6_4:1155932-1155951	None:intergenic	30.0%
ACTATGTTTCAGTTCAGTTA+AGG	+	chr6_4:1156056-1156075	Msa0969730:five_prime_UTR	30.0%
CTATGTTTCAGTTCAGTTAA+GGG	+	chr6_4:1156057-1156076	Msa0969730:five_prime_UTR	30.0%
GTTGAGAGTGAAATTGAAAA+TGG	+	chr6_4:1156234-1156253	Msa0969730:exon	30.0%
GATCCTAAACAACTATTTGT+TGG	+	chr6_4:1156316-1156335	Msa0969730:CDS	30.0%
TGATGAGTTCATATGATAGA+AGG	-	chr6_4:1156435-1156454	None:intergenic	30.0%
AAACAGGTTAAGACATTGTT+TGG	-	chr6_4:1156777-1156796	None:intergenic	30.0%
AAACAATGTCTTAACCTGTT+TGG	+	chr6_4:1156776-1156795	Msa0969730:intron	30.0%
TGCTGTTAAAATCATCAACA+AGG	+	chr6_4:1156895-1156914	Msa0969730:CDS	30.0%
GCTGTTAAAATCATCAACAA+GGG	+	chr6_4:1156896-1156915	Msa0969730:CDS	30.0%

Showing 1 to 10 of 300 entries

Previous1 2 3 4 5…30Next

Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	1155477	1159931	1155477	ID=Msa0969730;Name=Msa0969730
chr6_4	mRNA	1155477	1159931	1155477	ID=Msa0969730-mRNA-1;Parent=Msa0969730;Name=Msa0969730-mRNA-1;_AED=0.20;_eAED=0.20;_QI=776\|1\|1\|1\|1\|1\|6\|422\|352
chr6_4	exon	1155477	1156383	1155477	ID=Msa0969730-mRNA-1:exon:594;Parent=Msa0969730-mRNA-1
chr6_4	exon	1156877	1157009	1156877	ID=Msa0969730-mRNA-1:exon:595;Parent=Msa0969730-mRNA-1
chr6_4	exon	1157167	1157362	1157167	ID=Msa0969730-mRNA-1:exon:596;Parent=Msa0969730-mRNA-1
chr6_4	exon	1158093	1158217	1158093	ID=Msa0969730-mRNA-1:exon:597;Parent=Msa0969730-mRNA-1
chr6_4	exon	1158311	1158469	1158311	ID=Msa0969730-mRNA-1:exon:598;Parent=Msa0969730-mRNA-1
chr6_4	exon	1159195	1159931	1159195	ID=Msa0969730-mRNA-1:exon:599;Parent=Msa0969730-mRNA-1
chr6_4	five_prime_UTR	1155477	1156252	1155477	ID=Msa0969730-mRNA-1:five_prime_utr;Parent=Msa0969730-mRNA-1
chr6_4	CDS	1156253	1156383	1156253	ID=Msa0969730-mRNA-1:cds;Parent=Msa0969730-mRNA-1
chr6_4	CDS	1156877	1157009	1156877	ID=Msa0969730-mRNA-1:cds;Parent=Msa0969730-mRNA-1
chr6_4	CDS	1157167	1157362	1157167	ID=Msa0969730-mRNA-1:cds;Parent=Msa0969730-mRNA-1
chr6_4	CDS	1158093	1158217	1158093	ID=Msa0969730-mRNA-1:cds;Parent=Msa0969730-mRNA-1
chr6_4	CDS	1158311	1158469	1158311	ID=Msa0969730-mRNA-1:cds;Parent=Msa0969730-mRNA-1
chr6_4	CDS	1159195	1159509	1159195	ID=Msa0969730-mRNA-1:cds;Parent=Msa0969730-mRNA-1
chr6_4	three_prime_UTR	1159510	1159931	1159510	ID=Msa0969730-mRNA-1:three_prime_utr;Parent=Msa0969730-mRNA-1

Gene Sequence

>Msa0969730

ATGGGATCTGGTAATGAAGTTCATTCTGTTGGAGAGTTTAATTTAGATGCTAAATGGCTTATAGATCCTAAACAACTATTTGTTGGTCCTAAAATTGGTGAAGGTGCTCATGCTAAAGTTTATGAAGGAAAATATAAAAATCAAACTATTGCTGTTAAAATCATCAACAAGGGTGAAACTCCAGAAGAGATTTCAAGGAGAGAGGCTCGATTTGGCAGAGAGGTAGCTATGTTGTCGAAAGTTCAACACAAAAATTTGGTCAAGTTTATTGGGGCCTGTAAAGAACCTGTGATGGTTATAGTAACTGAGCTTCTATTAGGTGGAACATTGCGTAAATATCTGTTGAGTATGCGACCAAAGTGCTTGGATATGCGTGTGGCTGTTGGATTTGCTCTTGATATCGCTCGAGCAATGGAATGCTTACACTCACATGGGATCATCCATCGTGACCTTAAACCTGATAACTTGATCTTGACCGGAGATCATAGGACAGTTAAACTTGCTGATTTCGGTCTAGCCAGAGAAGAGTCATTAACAGAGATGATGACTGCTGAAACGGGAACATATCGTTGGATGGCTCCAGAACTTTACAGCACTGTTACTCTAAGGCAAGGTGAGAAGAAGCATTACAATCATAAAGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAGCTCATCCATAACAAGTTGCCCTTTGAAGGCATGTCTAATCTACAAGCAGCATATGCAGCTGCTTTTAAGAATACAAGGCCTAGTGCCGAAGATCTTCCTGGAGATTTAGCTATGATTGTAACATCATGCTGGAAAGAGGATCCAAATGATAGGCCGAATTTTAGTGAAATCATACAGATGCTCCTTCGGTATCTCTCTACCATTTCGCCATTAGAACCGGTTGTTCCAATGCGGATGGCTTCATCTGAGAATATTGTATTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGTTTCGACGAGACGACTCTGGAGAAACCCCGAAAGCCAACGTGGAAGACAGGTTCAAAGGGTATTTCGTCTGCTTCAATCAGTGTTATTGA

Protein sequence

>Msa0969730

MGSGNEVHSVGEFNLDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQTIAVKIINKGETPEEISRREARFGREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLSMRPKCLDMRVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTGDHRTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPGDLAMIVTSCWKEDPNDRPNFSEIIQMLLRYLSTISPLEPVVPMRMASSENIVLPPESPGTSALMFRRDDSGETPKANVEDRFKGYFVCFNQCY*