Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294720 | AFK45555.1 | 94.231 | 312 | 11 | 3 | 11 | 316 | 1 | 311 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294720 | sp|Q9LKA0|IQD10_ARATH | 54.741 | 232 | 91 | 4 | 11 | 242 | 1 | 218 | 1.01e-78 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294720 | I3SZ63 | 94.231 | 312 | 11 | 3 | 11 | 316 | 1 | 311 | 0.0 | 598 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018060 | Msa0294720 | 0.813742 | 2.194660e-51 | -8.615850e-47 |
| Msa0052380 | Msa0294720 | 0.810991 | 8.750005e-51 | -8.615850e-47 |
| Msa0199960 | Msa0294720 | 0.828234 | 1.006590e-54 | -8.615850e-47 |
| Msa0228250 | Msa0294720 | 0.985931 | 3.981697e-165 | -8.615850e-47 |
| Msa0242490 | Msa0294720 | 0.848244 | 6.935257e-60 | -8.615850e-47 |
| Msa0243600 | Msa0294720 | 0.825873 | 3.695702e-54 | -8.615850e-47 |
| Msa0255620 | Msa0294720 | 0.959115 | 4.356786e-117 | -8.615850e-47 |
| Msa0280690 | Msa0294720 | 0.853638 | 2.092935e-61 | -8.615850e-47 |
| Msa0282220 | Msa0294720 | 0.824088 | 9.753773e-54 | -8.615850e-47 |
| Msa0294720 | Msa0319940 | 0.814085 | 1.844058e-51 | -8.615850e-47 |
| Msa0294720 | Msa0333070 | 0.828439 | 8.983529e-55 | -8.615850e-47 |
| Msa0294720 | Msa0580580 | 0.807668 | 4.518000e-50 | -8.615850e-47 |
| Msa0294720 | Msa0726330 | 0.801776 | 7.674464e-49 | -8.615850e-47 |
| Msa0294720 | Msa1418990 | 0.805741 | 1.152957e-49 | -8.615850e-47 |
| Msa0294720 | Msa1436420 | 0.808383 | 3.182629e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294720 | MtrunA17_Chr2g0316401 | 93.168 | 322 | 10 | 4 | 1 | 316 | 1 | 316 | 0.0 | 584 |
| Msa0294720 | MtrunA17_Chr2g0283321 | 47.119 | 295 | 134 | 7 | 11 | 296 | 1 | 282 | 5.21e-79 | 242 |
| Msa0294720 | MtrunA17_Chr4g0025441 | 43.373 | 166 | 93 | 1 | 75 | 240 | 98 | 262 | 1.95e-32 | 124 |
| Msa0294720 | MtrunA17_Chr1g0200161 | 37.427 | 171 | 98 | 4 | 74 | 238 | 142 | 309 | 4.46e-30 | 119 |
| Msa0294720 | MtrunA17_Chr6g0462191 | 36.313 | 179 | 102 | 4 | 67 | 238 | 101 | 274 | 1.03e-28 | 114 |
| Msa0294720 | MtrunA17_Chr1g0181581 | 35.260 | 173 | 103 | 3 | 66 | 234 | 109 | 276 | 1.35e-26 | 108 |
| Msa0294720 | MtrunA17_Chr7g0263731 | 37.500 | 184 | 101 | 5 | 74 | 252 | 109 | 283 | 4.99e-25 | 104 |
| Msa0294720 | MtrunA17_Chr3g0135851 | 35.359 | 181 | 104 | 5 | 75 | 245 | 93 | 270 | 3.55e-22 | 96.3 |
| Msa0294720 | MtrunA17_Chr4g0045641 | 32.258 | 186 | 105 | 6 | 64 | 234 | 137 | 316 | 5.99e-20 | 90.1 |
| Msa0294720 | MtrunA17_Chr8g0346021 | 30.645 | 186 | 104 | 6 | 73 | 240 | 127 | 305 | 1.98e-15 | 76.6 |
| Msa0294720 | MtrunA17_Chr8g0342551 | 30.412 | 194 | 126 | 4 | 75 | 260 | 92 | 284 | 2.66e-13 | 70.1 |
| Msa0294720 | MtrunA17_Chr2g0330051 | 32.759 | 174 | 106 | 4 | 75 | 238 | 80 | 252 | 2.51e-11 | 63.9 |
| Msa0294720 | MtrunA17_Chr4g0020671 | 26.506 | 166 | 112 | 3 | 69 | 232 | 97 | 254 | 8.99e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0294720 | AT3G15050.1 | 54.741 | 232 | 91 | 4 | 11 | 242 | 1 | 218 | 1.03e-79 | 243 |
| Msa0294720 | AT2G33990.1 | 49.254 | 201 | 96 | 4 | 75 | 272 | 49 | 246 | 2.54e-62 | 199 |
| Msa0294720 | AT3G22190.3 | 35.841 | 226 | 141 | 3 | 72 | 295 | 87 | 310 | 4.88e-31 | 121 |
| Msa0294720 | AT3G22190.2 | 35.841 | 226 | 141 | 3 | 72 | 295 | 87 | 310 | 4.88e-31 | 121 |
| Msa0294720 | AT3G22190.4 | 35.841 | 226 | 141 | 3 | 72 | 295 | 87 | 310 | 4.88e-31 | 121 |
| Msa0294720 | AT3G22190.1 | 35.841 | 226 | 141 | 3 | 72 | 295 | 87 | 310 | 4.88e-31 | 121 |
| Msa0294720 | AT2G26180.1 | 40.571 | 175 | 95 | 4 | 75 | 241 | 86 | 259 | 2.59e-29 | 116 |
| Msa0294720 | AT2G26410.2 | 36.471 | 170 | 100 | 4 | 75 | 239 | 150 | 316 | 8.28e-29 | 116 |
| Msa0294720 | AT2G26410.1 | 36.471 | 170 | 100 | 4 | 75 | 239 | 150 | 316 | 8.28e-29 | 116 |
| Msa0294720 | AT5G03040.1 | 32.189 | 233 | 129 | 9 | 19 | 238 | 64 | 280 | 8.29e-27 | 110 |
| Msa0294720 | AT5G03040.3 | 32.189 | 233 | 129 | 9 | 19 | 238 | 64 | 280 | 8.29e-27 | 110 |
| Msa0294720 | AT5G03040.2 | 32.189 | 233 | 129 | 9 | 19 | 238 | 64 | 280 | 8.29e-27 | 110 |
| Msa0294720 | AT3G52290.1 | 35.227 | 176 | 106 | 4 | 66 | 238 | 101 | 271 | 2.34e-26 | 108 |
| Msa0294720 | AT3G09710.1 | 36.416 | 173 | 92 | 5 | 75 | 238 | 110 | 273 | 1.06e-25 | 106 |
| Msa0294720 | AT3G09710.2 | 34.066 | 182 | 98 | 4 | 75 | 238 | 110 | 287 | 1.09e-25 | 107 |
| Msa0294720 | AT1G72670.1 | 35.838 | 173 | 102 | 3 | 75 | 241 | 95 | 264 | 1.58e-24 | 103 |
| Msa0294720 | AT3G59690.2 | 32.948 | 173 | 102 | 7 | 61 | 230 | 157 | 318 | 2.30e-23 | 100 |
| Msa0294720 | AT3G59690.1 | 32.948 | 173 | 102 | 7 | 61 | 230 | 157 | 318 | 2.30e-23 | 100 |
| Msa0294720 | AT1G17480.1 | 34.091 | 176 | 93 | 6 | 56 | 229 | 85 | 239 | 2.65e-20 | 90.5 |
| Msa0294720 | AT2G43680.4 | 30.939 | 181 | 94 | 7 | 61 | 230 | 310 | 470 | 1.11e-17 | 84.0 |
| Msa0294720 | AT2G43680.2 | 30.939 | 181 | 94 | 7 | 61 | 230 | 310 | 470 | 1.11e-17 | 84.0 |
| Msa0294720 | AT2G43680.3 | 30.939 | 181 | 94 | 7 | 61 | 230 | 310 | 470 | 1.11e-17 | 84.0 |
| Msa0294720 | AT2G43680.5 | 30.939 | 181 | 94 | 7 | 61 | 230 | 310 | 470 | 1.11e-17 | 84.0 |
| Msa0294720 | AT2G43680.1 | 30.939 | 181 | 94 | 7 | 61 | 230 | 311 | 471 | 1.12e-17 | 84.0 |
| Msa0294720 | AT3G49260.1 | 25.888 | 197 | 121 | 4 | 75 | 252 | 122 | 312 | 4.67e-17 | 82.0 |
| Msa0294720 | AT3G49260.4 | 25.888 | 197 | 121 | 4 | 75 | 252 | 122 | 312 | 4.67e-17 | 82.0 |
| Msa0294720 | AT3G49260.2 | 25.888 | 197 | 121 | 4 | 75 | 252 | 122 | 312 | 4.67e-17 | 82.0 |
| Msa0294720 | AT3G49260.3 | 25.758 | 198 | 121 | 4 | 75 | 252 | 122 | 313 | 7.68e-17 | 81.3 |
| Msa0294720 | AT4G00820.1 | 27.488 | 211 | 125 | 7 | 48 | 241 | 112 | 311 | 1.44e-15 | 77.4 |
| Msa0294720 | AT1G01110.2 | 24.775 | 222 | 145 | 7 | 38 | 241 | 86 | 303 | 7.74e-13 | 69.3 |
Find 99 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGCATTTCGTTCATTTA+TGG | 0.156996 | 2_3:+46779832 | Msa0294720:CDS |
| ACTATTATTCCCTTCATTTC+AGG | 0.158527 | 2_3:+46782220 | Msa0294720:three_prime_UTR |
| GCCGTTGAGTTTCTTTGTTT+TGG | 0.177224 | 2_3:-46781806 | None:intergenic |
| TTGGTTTCTTCATCTTCTTT+TGG | 0.194840 | 2_3:+46782062 | Msa0294720:three_prime_UTR |
| GTGGTTCATCTTATCTAATT+TGG | 0.248605 | 2_3:-46781842 | None:intergenic |
| GAAGAACATTTCAACATCTA+AGG | 0.257374 | 2_3:+46781158 | Msa0294720:CDS |
| CCAAACTGTAACCAGTATTT+TGG | 0.272065 | 2_3:+46781682 | Msa0294720:CDS |
| CAGCGCGTCCTTGGGAGGTT+CGG | 0.294645 | 2_3:+46781767 | Msa0294720:CDS |
| TTGCATCCTTGTTTCAGTTC+AGG | 0.300797 | 2_3:+46778378 | Msa0294720:five_prime_UTR |
| AATGAAATGAAATGATAATT+AGG | 0.309959 | 2_3:-46778356 | None:intergenic |
| GTTGGGTTGCAGCGCGTCCT+TGG | 0.318135 | 2_3:+46781758 | Msa0294720:CDS |
| CTCCATCATCAAACCTTCAT+TGG | 0.319760 | 2_3:-46779759 | None:intergenic |
| TTCATGTTCTTGCTATTAGA+AGG | 0.344320 | 2_3:+46778704 | Msa0294720:five_prime_UTR |
| CTAATTTGGTCTTCTGCTGC+TGG | 0.344502 | 2_3:-46781828 | None:intergenic |
| AGATTCTCACAAGCCAAATA+TGG | 0.346709 | 2_3:-46782095 | None:intergenic |
| TGTTGTTCCTGTTTGGTCTC+TGG | 0.347194 | 2_3:-46781221 | None:intergenic |
| GTTGTCACACAACACTATTA+TGG | 0.372033 | 2_3:+46778224 | None:intergenic |
| TGGAGAGGACAGTTCCTTCC+AGG | 0.372133 | 2_3:+46779777 | Msa0294720:CDS |
| TTGGAGCTGGATGGAGCGTT+GGG | 0.373478 | 2_3:+46781741 | Msa0294720:CDS |
| CTATTAGAAGGTGCACTTGA+TGG | 0.373672 | 2_3:+46778716 | Msa0294720:exon |
| CCAAAATACTGGTTACAGTT+TGG | 0.386021 | 2_3:-46781682 | None:intergenic |
| GTTGGAGCTGGATGGAGCGT+TGG | 0.388313 | 2_3:+46781740 | Msa0294720:CDS |
| CACTTAACTACATACATTCA+TGG | 0.393069 | 2_3:+46781242 | Msa0294720:CDS |
| GGCATATGCTTTCTCTCATC+AGG | 0.394693 | 2_3:+46781578 | Msa0294720:CDS |
| ACTAAAGCTGCCATGTCAAA+TGG | 0.395308 | 2_3:+46781898 | Msa0294720:CDS |
| TTGGGTTGCAGCGCGTCCTT+GGG | 0.397902 | 2_3:+46781759 | Msa0294720:CDS |
| GAAACAGCTATCTTATTTCA+AGG | 0.401239 | 2_3:-46778684 | None:intergenic |
| GGTCAGGCTTCTTATAGCCT+TGG | 0.403857 | 2_3:+46781703 | Msa0294720:CDS |
| TAGCTGTTTCTCAACAAGAA+TGG | 0.414876 | 2_3:+46779045 | Msa0294720:CDS |
| AGCTGTTTCTCAACAAGAAT+GGG | 0.421083 | 2_3:+46779046 | Msa0294720:CDS |
| AAGAAGCCTGACCAAAATAC+TGG | 0.421606 | 2_3:-46781693 | None:intergenic |
| AGTTAAGTGTTGTTCCTGTT+TGG | 0.425963 | 2_3:-46781228 | None:intergenic |
| CAAGAATGGGTCCAAAGAAA+TGG | 0.430866 | 2_3:+46779059 | Msa0294720:CDS |
| AGCGCGTCCTTGGGAGGTTC+GGG | 0.435357 | 2_3:+46781768 | Msa0294720:CDS |
| GGCTTGTGAGAATCTATCAT+TGG | 0.440940 | 2_3:+46782103 | Msa0294720:three_prime_UTR |
| ATGAGGGCTGTGGTTCCCAT+TGG | 0.445641 | 2_3:-46779717 | None:intergenic |
| AGGGCTGTGGTTCCCATTGG+AGG | 0.449291 | 2_3:-46779714 | None:intergenic |
| TCCATCATCAAACCTTCATT+GGG | 0.455643 | 2_3:-46779758 | None:intergenic |
| GACATGGCAGCTTTAGTCAA+TGG | 0.463459 | 2_3:-46781892 | None:intergenic |
| AAGAAAGCTGGGGTTGGAGC+TGG | 0.466713 | 2_3:+46781728 | Msa0294720:CDS |
| AATCACTGCTCCTGAAATGA+AGG | 0.468044 | 2_3:-46782230 | None:intergenic |
| TTCTTCTCGCTGATGTATCC+TGG | 0.469935 | 2_3:-46781529 | None:intergenic |
| CAGGATTAAGCAAAAGAGAT+TGG | 0.472339 | 2_3:+46781318 | Msa0294720:CDS |
| CTTTCGTTGAAACATGGTAA+TGG | 0.482595 | 2_3:+46782194 | Msa0294720:three_prime_UTR |
| TTGATTCTTCATGAGGGCTG+TGG | 0.486263 | 2_3:-46779727 | None:intergenic |
| CTAAAGCTGCCATGTCAAAT+GGG | 0.486923 | 2_3:+46781899 | Msa0294720:CDS |
| ATAGCCTTGGTAAAGAAAGC+TGG | 0.489924 | 2_3:+46781716 | Msa0294720:CDS |
| GCTTGTGAGAATCTATCATT+GGG | 0.491190 | 2_3:+46782104 | Msa0294720:three_prime_UTR |
| AAGAACATTTCAACATCTAA+GGG | 0.495562 | 2_3:+46781159 | Msa0294720:CDS |
| GTGTTACTTGATTCTTCATG+AGG | 0.498076 | 2_3:-46779734 | None:intergenic |
| TAGCCTTGGTAAAGAAAGCT+GGG | 0.502264 | 2_3:+46781717 | Msa0294720:CDS |
| TTCACAATATTGCTGCTACT+CGG | 0.514388 | 2_3:+46779804 | Msa0294720:CDS |
| TTGGTAAAGAAAGCTGGGGT+TGG | 0.518496 | 2_3:+46781722 | Msa0294720:CDS |
| AGATAAATCAAACCAAGAAA+AGG | 0.519572 | 2_3:+46779117 | Msa0294720:CDS |
| GGGCTGTGGTTCCCATTGGA+GGG | 0.523559 | 2_3:-46779713 | None:intergenic |
| TTATAATCAGAAGGAAGAAA+CGG | 0.527194 | 2_3:+46779089 | Msa0294720:CDS |
| TCAAGTAACACTCCCAATGA+AGG | 0.535092 | 2_3:+46779746 | Msa0294720:CDS |
| TGCTAGCTTTCGTTGAAACA+TGG | 0.535564 | 2_3:+46782188 | Msa0294720:three_prime_UTR |
| TCCCAATGAAGGTTTGATGA+TGG | 0.538229 | 2_3:+46779757 | Msa0294720:CDS |
| CAATCTACTGAACCCTCCAA+TGG | 0.545908 | 2_3:+46779701 | Msa0294720:CDS |
| GTGCAGCGGTTCTGAAACAA+TGG | 0.546419 | 2_3:+46781494 | Msa0294720:CDS |
| ATCGCCATTAAAATCACCAT+TGG | 0.547703 | 2_3:+46781939 | Msa0294720:CDS |
| TTGTAGAGGATGATTAATGA+TGG | 0.548326 | 2_3:-46778311 | None:intergenic |
| AATCTACTGAACCCTCCAAT+GGG | 0.550183 | 2_3:+46779702 | Msa0294720:CDS |
| GACACGGAAGCTTTAGCCAA+TGG | 0.552731 | 2_3:-46781955 | None:intergenic |
| GGTTGCAGCGCGTCCTTGGG+AGG | 0.553914 | 2_3:+46781762 | Msa0294720:CDS |
| CACATGGCCAGAGACCAAAC+AGG | 0.554081 | 2_3:+46781214 | Msa0294720:CDS |
| AATGCGAAGGAGACTGAGAA+AGG | 0.557321 | 2_3:+46781979 | Msa0294720:CDS |
| GGTTTAAAATTATAATCAGA+AGG | 0.564252 | 2_3:+46779080 | Msa0294720:CDS |
| ACTCTCCTTCCCATTTGACA+TGG | 0.564367 | 2_3:-46781908 | None:intergenic |
| AGCTTCCGTGTCAAATGCGA+AGG | 0.566653 | 2_3:+46781966 | Msa0294720:CDS |
| CAATGGAAGAGATACTATCC+AGG | 0.570614 | 2_3:+46781511 | Msa0294720:CDS |
| ATCACTGCTCCTGAAATGAA+GGG | 0.571891 | 2_3:-46782229 | None:intergenic |
| AGTCTCCTTCGCATTTGACA+CGG | 0.580502 | 2_3:-46781971 | None:intergenic |
| CTGTTTGGTCTCTGGCCATG+TGG | 0.581097 | 2_3:-46781213 | None:intergenic |
| AGCTGCCATGTCAAATGGGA+AGG | 0.581376 | 2_3:+46781903 | Msa0294720:CDS |
| TGTGTATGATAACAGCAGCC+AGG | 0.581859 | 2_3:+46781299 | Msa0294720:CDS |
| AACCCCAGCTTTCTTTACCA+AGG | 0.586825 | 2_3:-46781720 | None:intergenic |
| ACTTGAACCCGAACCTCCCA+AGG | 0.587510 | 2_3:-46781775 | None:intergenic |
| TGTTACTTGATTCTTCATGA+GGG | 0.588183 | 2_3:-46779733 | None:intergenic |
| GAAATGAAATGATAATTAGG+AGG | 0.588318 | 2_3:-46778353 | None:intergenic |
| CCAATACCTGAACTGAAACA+AGG | 0.592576 | 2_3:-46778384 | None:intergenic |
| AGCAATATTGTGAATCAACC+TGG | 0.594625 | 2_3:-46779795 | None:intergenic |
| TGAATGTATCCCAGGTGGAA+TGG | 0.600817 | 2_3:+46781472 | Msa0294720:intron |
| CAAGAGGCTTACAATTGTAG+AGG | 0.612368 | 2_3:-46778325 | None:intergenic |
| AGCTTTAATTCAAGACCACA+TGG | 0.613946 | 2_3:+46781198 | Msa0294720:CDS |
| ATGAAGGTTTGATGATGGAG+AGG | 0.619518 | 2_3:+46779762 | Msa0294720:CDS |
| TCCCAGGTGGAATGGTGCAG+CGG | 0.626788 | 2_3:+46781480 | Msa0294720:intron |
| AAGCTGGGGTTGGAGCTGGA+TGG | 0.631067 | 2_3:+46781732 | Msa0294720:CDS |
| CCCAAAACAAAGAAACTCAA+CGG | 0.631804 | 2_3:+46781805 | Msa0294720:CDS |
| ATGAGAGAAAGCATATGCCA+TGG | 0.645984 | 2_3:-46781574 | None:intergenic |
| GGCTAAGATTAATGAGCTCG+AGG | 0.646302 | 2_3:+46781360 | Msa0294720:CDS |
| AATCAAACGAGAGCGAGCCA+TGG | 0.651456 | 2_3:+46781557 | Msa0294720:CDS |
| ATATTGTGAATCAACCTGGA+AGG | 0.653405 | 2_3:-46779791 | None:intergenic |
| TAATTAGGAGGATATACAAG+AGG | 0.670643 | 2_3:-46778341 | None:intergenic |
| AGAACATTTCAACATCTAAG+GGG | 0.685065 | 2_3:+46781160 | Msa0294720:CDS |
| AGCCTTGGTAAAGAAAGCTG+GGG | 0.695007 | 2_3:+46781718 | Msa0294720:CDS |
| TAAGATTAATGAGCTCGAGG+TGG | 0.704063 | 2_3:+46781363 | Msa0294720:CDS |
| TGGATAGTAATGTTAAGACG+TGG | 0.744653 | 2_3:-46778291 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAATGAAATTCTTT+TGG | - | chr2_3:46779456-46779475 | None:intergenic | 10.0% |
| !!! | AGTTTTAAATCAAATTTAAA+TGG | + | chr2_3:46780538-46780557 | Msa0294720:intron | 10.0% |
| !! | AATGAAATGAAATGATAATT+AGG | - | chr2_3:46778359-46778378 | None:intergenic | 15.0% |
| !!! | TTCAAAAGTTTATTTTTTTG+AGG | + | chr2_3:46778763-46778782 | Msa0294720:intron | 15.0% |
| !!! | TCAAAAGTTTATTTTTTTGA+GGG | + | chr2_3:46778764-46778783 | Msa0294720:intron | 15.0% |
| !!! | ATAATTTTAAACCATTTCTT+TGG | - | chr2_3:46779073-46779092 | None:intergenic | 15.0% |
| !!! | TTTGCAAATTTTAAAGTTAA+AGG | - | chr2_3:46779169-46779188 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTTTTATTACTAC+TGG | + | chr2_3:46780646-46780665 | Msa0294720:intron | 15.0% |
| !! | AAAATTATCTGTCATATTAT+GGG | - | chr2_3:46780874-46780893 | None:intergenic | 15.0% |
| !! | TAAAATTATCTGTCATATTA+TGG | - | chr2_3:46780875-46780894 | None:intergenic | 15.0% |
| !! | AAAATTATCTGTCATATTAT+GGG | - | chr2_3:46780874-46780893 | None:intergenic | 15.0% |
| !! | TAAAATTATCTGTCATATTA+TGG | - | chr2_3:46780875-46780894 | None:intergenic | 15.0% |
| !! | CATTTCATATATGAAGAAAA+GGG | + | chr2_3:46778440-46778459 | Msa0294720:intron | 20.0% |
| !! | ATTTCATATATGAAGAAAAG+GGG | + | chr2_3:46778441-46778460 | Msa0294720:intron | 20.0% |
| !! | TATATGTGCATAGTTAATTT+GGG | + | chr2_3:46778581-46778600 | Msa0294720:intron | 20.0% |
| !! | TCATCAAACAAACATTAAAA+GGG | - | chr2_3:46778933-46778952 | None:intergenic | 20.0% |
| !! | TTCATCAAACAAACATTAAA+AGG | - | chr2_3:46778934-46778953 | None:intergenic | 20.0% |
| !!! | GGTTTAAAATTATAATCAGA+AGG | + | chr2_3:46779080-46779099 | Msa0294720:CDS | 20.0% |
| !!! | CAAACTTAGTATTTTCATAA+GGG | - | chr2_3:46780215-46780234 | None:intergenic | 20.0% |
| !! | AAAATTCTATTTCCTTTAAG+TGG | + | chr2_3:46780264-46780283 | Msa0294720:intron | 20.0% |
| !! | ATAAAGTTCTATACTATCAA+AGG | + | chr2_3:46780402-46780421 | Msa0294720:intron | 20.0% |
| !! | TTTCAAACAGTTATAAAAGA+GGG | - | chr2_3:46780775-46780794 | None:intergenic | 20.0% |
| !! | TTTCAAACAGTTATAAAAGA+GGG | - | chr2_3:46780775-46780794 | None:intergenic | 20.0% |
| !! | AATAGAGATAACACTTTAAA+AGG | - | chr2_3:46781418-46781437 | None:intergenic | 20.0% |
| !!! | TCAAATTTTGTTTTCAAGAA+AGG | - | chr2_3:46781630-46781649 | None:intergenic | 20.0% |
| ! | GAAATGAAATGATAATTAGG+AGG | - | chr2_3:46778356-46778375 | None:intergenic | 25.0% |
| ! | TAAAATTGCATCAAAATCCA+AGG | - | chr2_3:46778414-46778433 | None:intergenic | 25.0% |
| !! | CCTTTTCTTCATATATGAAA+TGG | - | chr2_3:46778442-46778461 | None:intergenic | 25.0% |
| ! | CCATTTCATATATGAAGAAA+AGG | + | chr2_3:46778439-46778458 | Msa0294720:intron | 25.0% |
| ! | GTATATGTGCATAGTTAATT+TGG | + | chr2_3:46778580-46778599 | Msa0294720:intron | 25.0% |
| !!! | GATTGATTTTCAGATAGTTT+TGG | + | chr2_3:46778661-46778680 | Msa0294720:five_prime_UTR | 25.0% |
| ! | TTTGTTTGATGAACTCTTAA+CGG | + | chr2_3:46778941-46778960 | Msa0294720:intron | 25.0% |
| !! | TTTGAATATTGATGATATGC+AGG | + | chr2_3:46779015-46779034 | Msa0294720:intron | 25.0% |
| ! | TTATAATCAGAAGGAAGAAA+CGG | + | chr2_3:46779089-46779108 | Msa0294720:CDS | 25.0% |
| ! | AGATAAATCAAACCAAGAAA+AGG | + | chr2_3:46779117-46779136 | Msa0294720:CDS | 25.0% |
| ! | CCTGAAAGAAAATCTAAATT+AGG | - | chr2_3:46779224-46779243 | None:intergenic | 25.0% |
| !! | CCTAATTTAGATTTTCTTTC+AGG | + | chr2_3:46779221-46779240 | Msa0294720:intron | 25.0% |
| !!! | TTTTCTGTTTTAGTTGCATT+AGG | + | chr2_3:46779283-46779302 | Msa0294720:intron | 25.0% |
| !!! | TTTCTGTTTTAGTTGCATTA+GGG | + | chr2_3:46779284-46779303 | Msa0294720:intron | 25.0% |
| ! | ATTGTCATAATACACATTTC+TGG | + | chr2_3:46779379-46779398 | Msa0294720:intron | 25.0% |
| !! | TATGAGTTGACTAAAAAGTA+TGG | + | chr2_3:46779429-46779448 | Msa0294720:intron | 25.0% |
| !! | TATGAGTTGACTAAAAAGTA+TGG | + | chr2_3:46779429-46779448 | Msa0294720:intron | 25.0% |
| !! | AACGAAAAGTACAAATTTGA+AGG | + | chr2_3:46779573-46779592 | Msa0294720:intron | 25.0% |
| !! | ACGAAAAGTACAAATTTGAA+GGG | + | chr2_3:46779574-46779593 | Msa0294720:intron | 25.0% |
| ! | AAATGCATTTCGTTCATTTA+TGG | + | chr2_3:46779832-46779851 | Msa0294720:CDS | 25.0% |
| ! | TGTGAAAATTGTAGTAGAAA+TGG | - | chr2_3:46779892-46779911 | None:intergenic | 25.0% |
| ! | TAAAAATCACGAAATGCATA+AGG | - | chr2_3:46779962-46779981 | None:intergenic | 25.0% |
| !! | TTATGCATTTCGTGATTTTT+AGG | + | chr2_3:46779961-46779980 | Msa0294720:intron | 25.0% |
| !! | AGATGAGCTTTTTAATCTTA+CGG | - | chr2_3:46780023-46780042 | None:intergenic | 25.0% |
| ! | TAGTTCAAAAAACCAAAGTT+AGG | - | chr2_3:46780046-46780065 | None:intergenic | 25.0% |
| !! | GCAAACTTAGTATTTTCATA+AGG | - | chr2_3:46780216-46780235 | None:intergenic | 25.0% |
| !! | GAATATTTTGTATTTCCTCA+AGG | + | chr2_3:46780574-46780593 | Msa0294720:intron | 25.0% |
| !!! | TTGATAATGACTTTAGAACA+TGG | + | chr2_3:46780608-46780627 | Msa0294720:intron | 25.0% |
| ! | AACTTAAAGCAATTATGTTC+AGG | + | chr2_3:46780678-46780697 | Msa0294720:intron | 25.0% |
| ! | CTTTCAAACAGTTATAAAAG+AGG | - | chr2_3:46780776-46780795 | None:intergenic | 25.0% |
| ! | AAGTATAGAAAAACAGATGA+GGG | - | chr2_3:46780808-46780827 | None:intergenic | 25.0% |
| ! | TAAGTATAGAAAAACAGATG+AGG | - | chr2_3:46780809-46780828 | None:intergenic | 25.0% |
| !!! | TAATTAACTTGTTGTCAAGA+AGG | - | chr2_3:46780832-46780851 | None:intergenic | 25.0% |
| ! | CTTTCAAACAGTTATAAAAG+AGG | - | chr2_3:46780776-46780795 | None:intergenic | 25.0% |
| ! | AAGTATAGAAAAACAGATGA+GGG | - | chr2_3:46780808-46780827 | None:intergenic | 25.0% |
| ! | TAAGTATAGAAAAACAGATG+AGG | - | chr2_3:46780809-46780828 | None:intergenic | 25.0% |
| !!! | TAATTAACTTGTTGTCAAGA+AGG | - | chr2_3:46780832-46780851 | None:intergenic | 25.0% |
| !! | AATCGACATTTCTAAAGATA+GGG | - | chr2_3:46781046-46781065 | None:intergenic | 25.0% |
| !! | AAATCGACATTTCTAAAGAT+AGG | - | chr2_3:46781047-46781066 | None:intergenic | 25.0% |
| ! | AAGAACATTTCAACATCTAA+GGG | + | chr2_3:46781159-46781178 | Msa0294720:CDS | 25.0% |
| ! | AAATTTGACTACTAATGTCA+AGG | + | chr2_3:46781642-46781661 | Msa0294720:intron | 25.0% |
| !! | TTAGTCAATGGTGATTTTAA+TGG | - | chr2_3:46781883-46781902 | None:intergenic | 25.0% |
| ! | GAAAGAAAAACAAAACATGA+GGG | + | chr2_3:46782001-46782020 | Msa0294720:CDS | 25.0% |
| TTGTAGAGGATGATTAATGA+TGG | - | chr2_3:46778314-46778333 | None:intergenic | 30.0% | |
| TAATTAGGAGGATATACAAG+AGG | - | chr2_3:46778344-46778363 | None:intergenic | 30.0% | |
| ATGCAGTGTAATTCTATTTG+AGG | - | chr2_3:46778628-46778647 | None:intergenic | 30.0% | |
| AGAATTACACTGCATTAACT+TGG | + | chr2_3:46778633-46778652 | Msa0294720:intron | 30.0% | |
| ! | GAAACAGCTATCTTATTTCA+AGG | - | chr2_3:46778687-46778706 | None:intergenic | 30.0% |
| !! | TTCATGTTCTTGCTATTAGA+AGG | + | chr2_3:46778704-46778723 | Msa0294720:five_prime_UTR | 30.0% |
| TGATTTCAACTTTCAGTTTG+TGG | - | chr2_3:46778872-46778891 | None:intergenic | 30.0% | |
| ! | GAAAGGAAAAAACCTTTTCT+TGG | - | chr2_3:46779132-46779151 | None:intergenic | 30.0% |
| TTAGTTGACTAATGAGGATT+TGG | + | chr2_3:46779245-46779264 | Msa0294720:intron | 30.0% | |
| TAGTTGACTAATGAGGATTT+GGG | + | chr2_3:46779246-46779265 | Msa0294720:intron | 30.0% | |
| !! | GCATTAGGGTTTTAATATGT+TGG | + | chr2_3:46779298-46779317 | Msa0294720:intron | 30.0% |
| ! | AAGTTTTTCACCACTACTTT+TGG | - | chr2_3:46779512-46779531 | None:intergenic | 30.0% |
| ! | TAGTGGTGAAAAACTTTTGA+GGG | + | chr2_3:46779516-46779535 | Msa0294720:intron | 30.0% |
| ! | AGACGAGTCATATATGTTTT+TGG | - | chr2_3:46779601-46779620 | None:intergenic | 30.0% |
| ! | AAGACATTTTTACCTTGCTT+TGG | + | chr2_3:46779631-46779650 | Msa0294720:intron | 30.0% |
| ! | TGTTACTTGATTCTTCATGA+GGG | - | chr2_3:46779736-46779755 | None:intergenic | 30.0% |
| TTTGTGTAAACTTGATCCAA+CGG | + | chr2_3:46780087-46780106 | Msa0294720:intron | 30.0% | |
| CATGATTCCTTAACTACATA+GGG | + | chr2_3:46780136-46780155 | Msa0294720:intron | 30.0% | |
| ! | TTTTCATAAGGGTTAAGCAT+AGG | - | chr2_3:46780204-46780223 | None:intergenic | 30.0% |
| ! | ATTTTTGCTTTAGTAGACGA+AGG | - | chr2_3:46780249-46780268 | None:intergenic | 30.0% |
| AACTAGACTATCACTAAAGA+AGG | - | chr2_3:46780522-46780541 | None:intergenic | 30.0% | |
| TCAAAGTAAATGATACCTTG+AGG | - | chr2_3:46780592-46780611 | None:intergenic | 30.0% | |
| AAAAAAAGTGAAGACACTAG+TGG | - | chr2_3:46780635-46780654 | None:intergenic | 30.0% | |
| ! | ATCGACATTTCTAAAGATAG+GGG | - | chr2_3:46781045-46781064 | None:intergenic | 30.0% |
| GAAGAACATTTCAACATCTA+AGG | + | chr2_3:46781158-46781177 | Msa0294720:CDS | 30.0% | |
| AGAACATTTCAACATCTAAG+GGG | + | chr2_3:46781160-46781179 | Msa0294720:CDS | 30.0% | |
| CACTTAACTACATACATTCA+TGG | + | chr2_3:46781242-46781261 | Msa0294720:CDS | 30.0% | |
| GGAAAGTCAGTTAAAAATTG+AGG | + | chr2_3:46781339-46781358 | Msa0294720:CDS | 30.0% | |
| TCAAGAAAGGATAAATCAAG+TGG | - | chr2_3:46781617-46781636 | None:intergenic | 30.0% | |
| GTGGTTCATCTTATCTAATT+TGG | - | chr2_3:46781845-46781864 | None:intergenic | 30.0% | |
| !! | ATGGAGATTTTGTTTCATTG+TGG | - | chr2_3:46781864-46781883 | None:intergenic | 30.0% |
| ! | TTAGCCAATGGTGATTTTAA+TGG | - | chr2_3:46781946-46781965 | None:intergenic | 30.0% |
| GGAAAGAAAAACAAAACATG+AGG | + | chr2_3:46782000-46782019 | Msa0294720:CDS | 30.0% | |
| ! | TTGGTTTCTTCATCTTCTTT+TGG | + | chr2_3:46782062-46782081 | Msa0294720:three_prime_UTR | 30.0% |
| ! | TGGTTTCTTCATCTTCTTTT+GGG | + | chr2_3:46782063-46782082 | Msa0294720:three_prime_UTR | 30.0% |
| !! | TGGGGTTTATTTTCCATATT+TGG | + | chr2_3:46782082-46782101 | Msa0294720:three_prime_UTR | 30.0% |
| ACTATTATTCCCTTCATTTC+AGG | + | chr2_3:46782220-46782239 | Msa0294720:three_prime_UTR | 30.0% | |
| TGGATAGTAATGTTAAGACG+TGG | - | chr2_3:46778294-46778313 | None:intergenic | 35.0% | |
| CATATATGAAGAAAAGGGGT+TGG | + | chr2_3:46778445-46778464 | Msa0294720:intron | 35.0% | |
| ! | ACACTGCATTAACTTGGTTT+AGG | + | chr2_3:46778639-46778658 | Msa0294720:intron | 35.0% |
| !! | TAGCTGTTTCTCAACAAGAA+TGG | + | chr2_3:46779045-46779064 | Msa0294720:CDS | 35.0% |
| !! | AGCTGTTTCTCAACAAGAAT+GGG | + | chr2_3:46779046-46779065 | Msa0294720:CDS | 35.0% |
| TTGCAAACATGATGAGAGTT+TGG | + | chr2_3:46779182-46779201 | Msa0294720:intron | 35.0% | |
| !! | TCAGGATTAGTTGACTAATG+AGG | + | chr2_3:46779239-46779258 | Msa0294720:intron | 35.0% |
| AAAGTATGGACCAAAAGTAG+TGG | + | chr2_3:46779499-46779518 | Msa0294720:intron | 35.0% | |
| ! | GTAGTGGTGAAAAACTTTTG+AGG | + | chr2_3:46779515-46779534 | Msa0294720:intron | 35.0% |
| AAGAGAACAAGAAACAACAC+TGG | - | chr2_3:46779662-46779681 | None:intergenic | 35.0% | |
| !! | GTGTTACTTGATTCTTCATG+AGG | - | chr2_3:46779737-46779756 | None:intergenic | 35.0% |
| TCCATCATCAAACCTTCATT+GGG | - | chr2_3:46779761-46779780 | None:intergenic | 35.0% | |
| ATATTGTGAATCAACCTGGA+AGG | - | chr2_3:46779794-46779813 | None:intergenic | 35.0% | |
| AGCAATATTGTGAATCAACC+TGG | - | chr2_3:46779798-46779817 | None:intergenic | 35.0% | |
| TTCACAATATTGCTGCTACT+CGG | + | chr2_3:46779804-46779823 | Msa0294720:CDS | 35.0% | |
| AAAAGCTCATCTCCTAACTT+TGG | + | chr2_3:46780031-46780050 | Msa0294720:intron | 35.0% | |
| TTTGATGCAATCATACGATC+TGG | - | chr2_3:46780114-46780133 | None:intergenic | 35.0% | |
| CCTATGTAGTTAAGGAATCA+TGG | - | chr2_3:46780138-46780157 | None:intergenic | 35.0% | |
| CCATGATTCCTTAACTACAT+AGG | + | chr2_3:46780135-46780154 | Msa0294720:intron | 35.0% | |
| CTAGATTCCCTATGTAGTTA+AGG | - | chr2_3:46780146-46780165 | None:intergenic | 35.0% | |
| CTTAACTACATAGGGAATCT+AGG | + | chr2_3:46780144-46780163 | Msa0294720:intron | 35.0% | |
| !! | AGTTAGAAGGTACCACTTAA+AGG | - | chr2_3:46780279-46780298 | None:intergenic | 35.0% |
| TGATTGCAAGGAAAGTTAGA+AGG | - | chr2_3:46780292-46780311 | None:intergenic | 35.0% | |
| TTTCCTTGCAATCATAGACA+TGG | + | chr2_3:46780298-46780317 | Msa0294720:intron | 35.0% | |
| CAACTTAACAAAGTGACATG+AGG | + | chr2_3:46780354-46780373 | Msa0294720:intron | 35.0% | |
| ! | AGCTTTAATTCAAGACCACA+TGG | + | chr2_3:46781198-46781217 | Msa0294720:CDS | 35.0% |
| ! | AGTTAAGTGTTGTTCCTGTT+TGG | - | chr2_3:46781231-46781250 | None:intergenic | 35.0% |
| ! | CAATCTCTTTTGCTTAATCC+TGG | - | chr2_3:46781320-46781339 | None:intergenic | 35.0% |
| CAGGATTAAGCAAAAGAGAT+TGG | + | chr2_3:46781318-46781337 | Msa0294720:CDS | 35.0% | |
| ATGTCAAGGTAATATTGCAG+TGG | + | chr2_3:46781656-46781675 | Msa0294720:intron | 35.0% | |
| ! | CCAAAATACTGGTTACAGTT+TGG | - | chr2_3:46781685-46781704 | None:intergenic | 35.0% |
| ! | CCAAACTGTAACCAGTATTT+TGG | + | chr2_3:46781682-46781701 | Msa0294720:CDS | 35.0% |
| !!! | GTTGAGTTTCTTTGTTTTGG+GGG | - | chr2_3:46781806-46781825 | None:intergenic | 35.0% |
| !!! | CGTTGAGTTTCTTTGTTTTG+GGG | - | chr2_3:46781807-46781826 | None:intergenic | 35.0% |
| !!! | CCGTTGAGTTTCTTTGTTTT+GGG | - | chr2_3:46781808-46781827 | None:intergenic | 35.0% |
| CCCAAAACAAAGAAACTCAA+CGG | + | chr2_3:46781805-46781824 | Msa0294720:CDS | 35.0% | |
| ATCGCCATTAAAATCACCAT+TGG | + | chr2_3:46781939-46781958 | Msa0294720:CDS | 35.0% | |
| ! | TTTTCTGCCTCAGCATTTTT+TGG | - | chr2_3:46782030-46782049 | None:intergenic | 35.0% |
| CAGAAAAATTGAATGGCTCT+TGG | + | chr2_3:46782043-46782062 | Msa0294720:three_prime_UTR | 35.0% | |
| ! | GGTTTCTTCATCTTCTTTTG+GGG | + | chr2_3:46782064-46782083 | Msa0294720:three_prime_UTR | 35.0% |
| AGATTCTCACAAGCCAAATA+TGG | - | chr2_3:46782098-46782117 | None:intergenic | 35.0% | |
| GCTTGTGAGAATCTATCATT+GGG | + | chr2_3:46782104-46782123 | Msa0294720:three_prime_UTR | 35.0% | |
| CTTTCGTTGAAACATGGTAA+TGG | + | chr2_3:46782194-46782213 | Msa0294720:three_prime_UTR | 35.0% | |
| CAAGAGGCTTACAATTGTAG+AGG | - | chr2_3:46778328-46778347 | None:intergenic | 40.0% | |
| ! | TTGCATCCTTGTTTCAGTTC+AGG | + | chr2_3:46778378-46778397 | Msa0294720:five_prime_UTR | 40.0% |
| CCAATACCTGAACTGAAACA+AGG | - | chr2_3:46778387-46778406 | None:intergenic | 40.0% | |
| ! | CCTTGTTTCAGTTCAGGTAT+TGG | + | chr2_3:46778384-46778403 | Msa0294720:intron | 40.0% |
| ! | CTATTAGAAGGTGCACTTGA+TGG | + | chr2_3:46778716-46778735 | Msa0294720:exon | 40.0% |
| CAAGAATGGGTCCAAAGAAA+TGG | + | chr2_3:46779059-46779078 | Msa0294720:CDS | 40.0% | |
| AGGACTGAAAAGAGAGAGAA+AGG | - | chr2_3:46779149-46779168 | None:intergenic | 40.0% | |
| TCTCTTAGCACTCTTTGAAC+AGG | + | chr2_3:46779676-46779695 | Msa0294720:intron | 40.0% | |
| AATCTACTGAACCCTCCAAT+GGG | + | chr2_3:46779702-46779721 | Msa0294720:CDS | 40.0% | |
| TCAAGTAACACTCCCAATGA+AGG | + | chr2_3:46779746-46779765 | Msa0294720:CDS | 40.0% | |
| TCCCAATGAAGGTTTGATGA+TGG | + | chr2_3:46779757-46779776 | Msa0294720:CDS | 40.0% | |
| CTCCATCATCAAACCTTCAT+TGG | - | chr2_3:46779762-46779781 | None:intergenic | 40.0% | |
| !! | ATGAAGGTTTGATGATGGAG+AGG | + | chr2_3:46779762-46779781 | Msa0294720:CDS | 40.0% |
| ! | TCATTGACTGCATGATTGGA+TGG | - | chr2_3:46779994-46780013 | None:intergenic | 40.0% |
| ! | CAGATCATTGACTGCATGAT+TGG | - | chr2_3:46779998-46780017 | None:intergenic | 40.0% |
| !! | ACAGCTCTCTGATTTTGGAA+GGG | + | chr2_3:46780702-46780721 | Msa0294720:intron | 40.0% |
| TTGGAAGGGGAATTAAGTCA+TGG | + | chr2_3:46780716-46780735 | Msa0294720:intron | 40.0% | |
| TGGAAGGGGAATTAAGTCAT+GGG | + | chr2_3:46780717-46780736 | Msa0294720:intron | 40.0% | |
| TTGCCTGCATACATAGGTAT+GGG | - | chr2_3:46781138-46781157 | None:intergenic | 40.0% | |
| TTCTTCTTGCCTGCATACAT+AGG | - | chr2_3:46781144-46781163 | None:intergenic | 40.0% | |
| TAAGATTAATGAGCTCGAGG+TGG | + | chr2_3:46781363-46781382 | Msa0294720:CDS | 40.0% | |
| ! | ACGTTTTGTGAATGTATCCC+AGG | + | chr2_3:46781464-46781483 | Msa0294720:intron | 40.0% |
| ! | TTTTGTGAATGTATCCCAGG+TGG | + | chr2_3:46781467-46781486 | Msa0294720:intron | 40.0% |
| CAATGGAAGAGATACTATCC+AGG | + | chr2_3:46781511-46781530 | Msa0294720:CDS | 40.0% | |
| ! | ATGAGAGAAAGCATATGCCA+TGG | - | chr2_3:46781577-46781596 | None:intergenic | 40.0% |
| TCAAGGTAATATTGCAGTGG+AGG | + | chr2_3:46781659-46781678 | Msa0294720:intron | 40.0% | |
| !!! | CTGTAACCAGTATTTTGGTC+AGG | + | chr2_3:46781687-46781706 | Msa0294720:CDS | 40.0% |
| AAGAAGCCTGACCAAAATAC+TGG | - | chr2_3:46781696-46781715 | None:intergenic | 40.0% | |
| ! | ATAGCCTTGGTAAAGAAAGC+TGG | + | chr2_3:46781716-46781735 | Msa0294720:CDS | 40.0% |
| ! | TAGCCTTGGTAAAGAAAGCT+GGG | + | chr2_3:46781717-46781736 | Msa0294720:CDS | 40.0% |
| !! | GCCGTTGAGTTTCTTTGTTT+TGG | - | chr2_3:46781809-46781828 | None:intergenic | 40.0% |
| ACTAAAGCTGCCATGTCAAA+TGG | + | chr2_3:46781898-46781917 | Msa0294720:CDS | 40.0% | |
| CTAAAGCTGCCATGTCAAAT+GGG | + | chr2_3:46781899-46781918 | Msa0294720:CDS | 40.0% | |
| GCTGAGGCAGAAAAATTGAA+TGG | + | chr2_3:46782036-46782055 | Msa0294720:three_prime_UTR | 40.0% | |
| GGCTTGTGAGAATCTATCAT+TGG | + | chr2_3:46782103-46782122 | Msa0294720:three_prime_UTR | 40.0% | |
| !! | TGCTAGCTTTCGTTGAAACA+TGG | + | chr2_3:46782188-46782207 | Msa0294720:three_prime_UTR | 40.0% |
| ATCACTGCTCCTGAAATGAA+GGG | - | chr2_3:46782232-46782251 | None:intergenic | 40.0% | |
| AATCACTGCTCCTGAAATGA+AGG | - | chr2_3:46782233-46782252 | None:intergenic | 40.0% | |
| !! | GTTCAGGTATTGGAACTCCT+TGG | + | chr2_3:46778394-46778413 | Msa0294720:intron | 45.0% |
| CAATCTACTGAACCCTCCAA+TGG | + | chr2_3:46779701-46779720 | Msa0294720:CDS | 45.0% | |
| TTGATTCTTCATGAGGGCTG+TGG | - | chr2_3:46779730-46779749 | None:intergenic | 45.0% | |
| AATCATACGATCTGGACCGT+TGG | - | chr2_3:46780106-46780125 | None:intergenic | 45.0% | |
| CAGCCATGTCTATGATTGCA+AGG | - | chr2_3:46780304-46780323 | None:intergenic | 45.0% | |
| ! | CACAGCTCTCTGATTTTGGA+AGG | + | chr2_3:46780701-46780720 | Msa0294720:intron | 45.0% |
| !! | CAGCTCTCTGATTTTGGAAG+GGG | + | chr2_3:46780703-46780722 | Msa0294720:intron | 45.0% |
| TGCCTGCATACATAGGTATG+GGG | - | chr2_3:46781137-46781156 | None:intergenic | 45.0% | |
| CTTGCCTGCATACATAGGTA+TGG | - | chr2_3:46781139-46781158 | None:intergenic | 45.0% | |
| TGTTGTTCCTGTTTGGTCTC+TGG | - | chr2_3:46781224-46781243 | None:intergenic | 45.0% | |
| TGTGTATGATAACAGCAGCC+AGG | + | chr2_3:46781299-46781318 | Msa0294720:CDS | 45.0% | |
| GGCTAAGATTAATGAGCTCG+AGG | + | chr2_3:46781360-46781379 | Msa0294720:CDS | 45.0% | |
| TGAATGTATCCCAGGTGGAA+TGG | + | chr2_3:46781472-46781491 | Msa0294720:intron | 45.0% | |
| TTCTTCTCGCTGATGTATCC+TGG | - | chr2_3:46781532-46781551 | None:intergenic | 45.0% | |
| GGCATATGCTTTCTCTCATC+AGG | + | chr2_3:46781578-46781597 | Msa0294720:CDS | 45.0% | |
| AGCCTTGGTAAAGAAAGCTG+GGG | + | chr2_3:46781718-46781737 | Msa0294720:CDS | 45.0% | |
| AACCCCAGCTTTCTTTACCA+AGG | - | chr2_3:46781723-46781742 | None:intergenic | 45.0% | |
| TTGGTAAAGAAAGCTGGGGT+TGG | + | chr2_3:46781722-46781741 | Msa0294720:CDS | 45.0% | |
| ! | CTAATTTGGTCTTCTGCTGC+TGG | - | chr2_3:46781831-46781850 | None:intergenic | 45.0% |
| ! | GACATGGCAGCTTTAGTCAA+TGG | - | chr2_3:46781895-46781914 | None:intergenic | 45.0% |
| ACTCTCCTTCCCATTTGACA+TGG | - | chr2_3:46781911-46781930 | None:intergenic | 45.0% | |
| AGTCTCCTTCGCATTTGACA+CGG | - | chr2_3:46781974-46781993 | None:intergenic | 45.0% | |
| AATGCGAAGGAGACTGAGAA+AGG | + | chr2_3:46781979-46781998 | Msa0294720:CDS | 45.0% | |
| !!! | TTTAAAAGATTATAATATTT+TGG | + | chr2_3:46779350-46779369 | Msa0294720:intron | 5.0% |
| !!! | TTAAAAGATTATAATATTTT+GGG | + | chr2_3:46779351-46779370 | Msa0294720:intron | 5.0% |
| !! | TAATATACAAAAATAAAAAA+TGG | + | chr2_3:46780064-46780083 | Msa0294720:intron | 5.0% |
| ACACTGGATGTGCCAAAGCA+AGG | - | chr2_3:46779646-46779665 | None:intergenic | 50.0% | |
| ! | CAGGCACAGCTCTCTGATTT+TGG | + | chr2_3:46780697-46780716 | Msa0294720:intron | 50.0% |
| GCCTGCATACATAGGTATGG+GGG | - | chr2_3:46781136-46781155 | None:intergenic | 50.0% | |
| !! | GTGCAGCGGTTCTGAAACAA+TGG | + | chr2_3:46781494-46781513 | Msa0294720:CDS | 50.0% |
| AATCAAACGAGAGCGAGCCA+TGG | + | chr2_3:46781557-46781576 | Msa0294720:CDS | 50.0% | |
| GGTCAGGCTTCTTATAGCCT+TGG | + | chr2_3:46781703-46781722 | Msa0294720:CDS | 50.0% | |
| AGCTGCCATGTCAAATGGGA+AGG | + | chr2_3:46781903-46781922 | Msa0294720:CDS | 50.0% | |
| ! | GACACGGAAGCTTTAGCCAA+TGG | - | chr2_3:46781958-46781977 | None:intergenic | 50.0% |
| AGCTTCCGTGTCAAATGCGA+AGG | + | chr2_3:46781966-46781985 | Msa0294720:CDS | 50.0% | |
| AGGGCTGCCAAAAAATGCTG+AGG | + | chr2_3:46782020-46782039 | Msa0294720:exon | 50.0% | |
| ATGAGGGCTGTGGTTCCCAT+TGG | - | chr2_3:46779720-46779739 | None:intergenic | 55.0% | |
| TGGAGAGGACAGTTCCTTCC+AGG | + | chr2_3:46779777-46779796 | Msa0294720:CDS | 55.0% | |
| GCCCCCATACCTATGTATGC+AGG | + | chr2_3:46781132-46781151 | Msa0294720:intron | 55.0% | |
| CTGTTTGGTCTCTGGCCATG+TGG | - | chr2_3:46781216-46781235 | None:intergenic | 55.0% | |
| CACATGGCCAGAGACCAAAC+AGG | + | chr2_3:46781214-46781233 | Msa0294720:CDS | 55.0% | |
| AAGAAAGCTGGGGTTGGAGC+TGG | + | chr2_3:46781728-46781747 | Msa0294720:CDS | 55.0% | |
| ! | TTGGAGCTGGATGGAGCGTT+GGG | + | chr2_3:46781741-46781760 | Msa0294720:CDS | 55.0% |
| ACTTGAACCCGAACCTCCCA+AGG | - | chr2_3:46781778-46781797 | None:intergenic | 55.0% | |
| GGGCTGTGGTTCCCATTGGA+GGG | - | chr2_3:46779716-46779735 | None:intergenic | 60.0% | |
| AGGGCTGTGGTTCCCATTGG+AGG | - | chr2_3:46779717-46779736 | None:intergenic | 60.0% | |
| TCCCAGGTGGAATGGTGCAG+CGG | + | chr2_3:46781480-46781499 | Msa0294720:intron | 60.0% | |
| ACCGCTGCACCATTCCACCT+GGG | - | chr2_3:46781484-46781503 | None:intergenic | 60.0% | |
| AACCGCTGCACCATTCCACC+TGG | - | chr2_3:46781485-46781504 | None:intergenic | 60.0% | |
| AAGCTGGGGTTGGAGCTGGA+TGG | + | chr2_3:46781732-46781751 | Msa0294720:CDS | 60.0% | |
| GTTGGAGCTGGATGGAGCGT+TGG | + | chr2_3:46781740-46781759 | Msa0294720:CDS | 60.0% | |
| ! | TTGGGTTGCAGCGCGTCCTT+GGG | + | chr2_3:46781759-46781778 | Msa0294720:CDS | 60.0% |
| ! | GTTGGGTTGCAGCGCGTCCT+TGG | + | chr2_3:46781758-46781777 | Msa0294720:CDS | 65.0% |
| CAGCGCGTCCTTGGGAGGTT+CGG | + | chr2_3:46781767-46781786 | Msa0294720:CDS | 65.0% | |
| AGCGCGTCCTTGGGAGGTTC+GGG | + | chr2_3:46781768-46781787 | Msa0294720:CDS | 65.0% | |
| GGTTGCAGCGCGTCCTTGGG+AGG | + | chr2_3:46781762-46781781 | Msa0294720:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 46778234 | 46782300 | 46778234 | ID=Msa0294720;Name=Msa0294720 |
| chr2_3 | mRNA | 46778234 | 46782300 | 46778234 | ID=Msa0294720-mRNA-1;Parent=Msa0294720;Name=Msa0294720-mRNA-1;_AED=0.11;_eAED=0.11;_QI=240|0.83|0.85|1|0.5|0.57|7|280|316 |
| chr2_3 | exon | 46778234 | 46778399 | 46778234 | ID=Msa0294720-mRNA-1:exon:14598;Parent=Msa0294720-mRNA-1 |
| chr2_3 | exon | 46778661 | 46778737 | 46778661 | ID=Msa0294720-mRNA-1:exon:14599;Parent=Msa0294720-mRNA-1 |
| chr2_3 | exon | 46779037 | 46779138 | 46779037 | ID=Msa0294720-mRNA-1:exon:14600;Parent=Msa0294720-mRNA-1 |
| chr2_3 | exon | 46779698 | 46779853 | 46779698 | ID=Msa0294720-mRNA-1:exon:14601;Parent=Msa0294720-mRNA-1 |
| chr2_3 | exon | 46781154 | 46781384 | 46781154 | ID=Msa0294720-mRNA-1:exon:14602;Parent=Msa0294720-mRNA-1 |
| chr2_3 | exon | 46781486 | 46781599 | 46781486 | ID=Msa0294720-mRNA-1:exon:14603;Parent=Msa0294720-mRNA-1 |
| chr2_3 | exon | 46781676 | 46782300 | 46781676 | ID=Msa0294720-mRNA-1:exon:14604;Parent=Msa0294720-mRNA-1 |
| chr2_3 | five_prime_UTR | 46778234 | 46778399 | 46778234 | ID=Msa0294720-mRNA-1:five_prime_utr;Parent=Msa0294720-mRNA-1 |
| chr2_3 | five_prime_UTR | 46778661 | 46778734 | 46778661 | ID=Msa0294720-mRNA-1:five_prime_utr;Parent=Msa0294720-mRNA-1 |
| chr2_3 | CDS | 46778735 | 46778737 | 46778735 | ID=Msa0294720-mRNA-1:cds;Parent=Msa0294720-mRNA-1 |
| chr2_3 | CDS | 46779037 | 46779138 | 46779037 | ID=Msa0294720-mRNA-1:cds;Parent=Msa0294720-mRNA-1 |
| chr2_3 | CDS | 46779698 | 46779853 | 46779698 | ID=Msa0294720-mRNA-1:cds;Parent=Msa0294720-mRNA-1 |
| chr2_3 | CDS | 46781154 | 46781384 | 46781154 | ID=Msa0294720-mRNA-1:cds;Parent=Msa0294720-mRNA-1 |
| chr2_3 | CDS | 46781486 | 46781599 | 46781486 | ID=Msa0294720-mRNA-1:cds;Parent=Msa0294720-mRNA-1 |
| chr2_3 | CDS | 46781676 | 46782020 | 46781676 | ID=Msa0294720-mRNA-1:cds;Parent=Msa0294720-mRNA-1 |
| chr2_3 | three_prime_UTR | 46782021 | 46782300 | 46782021 | ID=Msa0294720-mRNA-1:three_prime_utr;Parent=Msa0294720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
