Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228250 | AFK45555.1 | 94.231 | 312 | 11 | 3 | 11 | 316 | 1 | 311 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228250 | sp|Q9LKA0|IQD10_ARATH | 54.741 | 232 | 91 | 4 | 11 | 242 | 1 | 218 | 1.01e-78 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228250 | I3SZ63 | 94.231 | 312 | 11 | 3 | 11 | 316 | 1 | 311 | 0.0 | 598 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018060 | Msa0228250 | 0.818844 | 1.585376e-52 | -8.615850e-47 |
| Msa0052380 | Msa0228250 | 0.818451 | 1.947132e-52 | -8.615850e-47 |
| Msa0097390 | Msa0228250 | 0.806304 | 8.779953e-50 | -8.615850e-47 |
| Msa0199960 | Msa0228250 | 0.836844 | 7.376121e-57 | -8.615850e-47 |
| Msa0228250 | Msa0242490 | 0.857962 | 1.141715e-62 | -8.615850e-47 |
| Msa0228250 | Msa0243600 | 0.821831 | 3.276338e-53 | -8.615850e-47 |
| Msa0228250 | Msa0255620 | 0.965417 | 1.408697e-124 | -8.615850e-47 |
| Msa0228250 | Msa0280690 | 0.866167 | 3.474727e-65 | -8.615850e-47 |
| Msa0228250 | Msa0282220 | 0.818180 | 2.242877e-52 | -8.615850e-47 |
| Msa0228250 | Msa0294720 | 0.985931 | 3.981697e-165 | -8.615850e-47 |
| Msa0228250 | Msa0319940 | 0.816375 | 5.712069e-52 | -8.615850e-47 |
| Msa0228250 | Msa0333070 | 0.846153 | 2.597518e-59 | -8.615850e-47 |
| Msa0228250 | Msa0485970 | 0.803215 | 3.877581e-49 | -8.615850e-47 |
| Msa0228250 | Msa0564950 | 0.809064 | 2.276111e-50 | -8.615850e-47 |
| Msa0228250 | Msa0580580 | 0.819066 | 1.411656e-52 | -8.615850e-47 |
| Msa0228250 | Msa0618050 | 0.812728 | 3.663803e-51 | -8.615850e-47 |
| Msa0228250 | Msa0726330 | 0.808027 | 3.788778e-50 | -8.615850e-47 |
| Msa0228250 | Msa1037550 | 0.809290 | 2.035563e-50 | -8.615850e-47 |
| Msa0228250 | Msa1199270 | 0.801470 | 8.870481e-49 | -8.615850e-47 |
| Msa0228250 | Msa1418990 | 0.809512 | 1.823793e-50 | -8.615850e-47 |
| Msa0228250 | Msa1436420 | 0.802683 | 4.994065e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228250 | MtrunA17_Chr2g0316401 | 93.168 | 322 | 10 | 4 | 1 | 316 | 1 | 316 | 0.0 | 584 |
| Msa0228250 | MtrunA17_Chr2g0283321 | 47.119 | 295 | 134 | 7 | 11 | 296 | 1 | 282 | 5.21e-79 | 242 |
| Msa0228250 | MtrunA17_Chr4g0025441 | 43.373 | 166 | 93 | 1 | 75 | 240 | 98 | 262 | 1.95e-32 | 124 |
| Msa0228250 | MtrunA17_Chr1g0200161 | 37.427 | 171 | 98 | 4 | 74 | 238 | 142 | 309 | 4.46e-30 | 119 |
| Msa0228250 | MtrunA17_Chr6g0462191 | 36.313 | 179 | 102 | 4 | 67 | 238 | 101 | 274 | 1.03e-28 | 114 |
| Msa0228250 | MtrunA17_Chr1g0181581 | 35.260 | 173 | 103 | 3 | 66 | 234 | 109 | 276 | 1.35e-26 | 108 |
| Msa0228250 | MtrunA17_Chr7g0263731 | 37.500 | 184 | 101 | 5 | 74 | 252 | 109 | 283 | 4.99e-25 | 104 |
| Msa0228250 | MtrunA17_Chr3g0135851 | 35.359 | 181 | 104 | 5 | 75 | 245 | 93 | 270 | 3.55e-22 | 96.3 |
| Msa0228250 | MtrunA17_Chr4g0045641 | 32.258 | 186 | 105 | 6 | 64 | 234 | 137 | 316 | 5.99e-20 | 90.1 |
| Msa0228250 | MtrunA17_Chr8g0346021 | 30.645 | 186 | 104 | 6 | 73 | 240 | 127 | 305 | 1.98e-15 | 76.6 |
| Msa0228250 | MtrunA17_Chr8g0342551 | 30.412 | 194 | 126 | 4 | 75 | 260 | 92 | 284 | 2.66e-13 | 70.1 |
| Msa0228250 | MtrunA17_Chr2g0330051 | 32.759 | 174 | 106 | 4 | 75 | 238 | 80 | 252 | 2.51e-11 | 63.9 |
| Msa0228250 | MtrunA17_Chr4g0020671 | 26.506 | 166 | 112 | 3 | 69 | 232 | 97 | 254 | 8.99e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0228250 | AT3G15050.1 | 54.741 | 232 | 91 | 4 | 11 | 242 | 1 | 218 | 1.03e-79 | 243 |
| Msa0228250 | AT2G33990.1 | 49.254 | 201 | 96 | 4 | 75 | 272 | 49 | 246 | 2.54e-62 | 199 |
| Msa0228250 | AT3G22190.3 | 35.841 | 226 | 141 | 3 | 72 | 295 | 87 | 310 | 4.88e-31 | 121 |
| Msa0228250 | AT3G22190.2 | 35.841 | 226 | 141 | 3 | 72 | 295 | 87 | 310 | 4.88e-31 | 121 |
| Msa0228250 | AT3G22190.4 | 35.841 | 226 | 141 | 3 | 72 | 295 | 87 | 310 | 4.88e-31 | 121 |
| Msa0228250 | AT3G22190.1 | 35.841 | 226 | 141 | 3 | 72 | 295 | 87 | 310 | 4.88e-31 | 121 |
| Msa0228250 | AT2G26180.1 | 40.571 | 175 | 95 | 4 | 75 | 241 | 86 | 259 | 2.59e-29 | 116 |
| Msa0228250 | AT2G26410.2 | 36.471 | 170 | 100 | 4 | 75 | 239 | 150 | 316 | 8.28e-29 | 116 |
| Msa0228250 | AT2G26410.1 | 36.471 | 170 | 100 | 4 | 75 | 239 | 150 | 316 | 8.28e-29 | 116 |
| Msa0228250 | AT5G03040.1 | 32.189 | 233 | 129 | 9 | 19 | 238 | 64 | 280 | 8.29e-27 | 110 |
| Msa0228250 | AT5G03040.3 | 32.189 | 233 | 129 | 9 | 19 | 238 | 64 | 280 | 8.29e-27 | 110 |
| Msa0228250 | AT5G03040.2 | 32.189 | 233 | 129 | 9 | 19 | 238 | 64 | 280 | 8.29e-27 | 110 |
| Msa0228250 | AT3G52290.1 | 35.227 | 176 | 106 | 4 | 66 | 238 | 101 | 271 | 2.34e-26 | 108 |
| Msa0228250 | AT3G09710.1 | 36.416 | 173 | 92 | 5 | 75 | 238 | 110 | 273 | 1.06e-25 | 106 |
| Msa0228250 | AT3G09710.2 | 34.066 | 182 | 98 | 4 | 75 | 238 | 110 | 287 | 1.09e-25 | 107 |
| Msa0228250 | AT1G72670.1 | 35.838 | 173 | 102 | 3 | 75 | 241 | 95 | 264 | 1.58e-24 | 103 |
| Msa0228250 | AT3G59690.2 | 32.948 | 173 | 102 | 7 | 61 | 230 | 157 | 318 | 2.30e-23 | 100 |
| Msa0228250 | AT3G59690.1 | 32.948 | 173 | 102 | 7 | 61 | 230 | 157 | 318 | 2.30e-23 | 100 |
| Msa0228250 | AT1G17480.1 | 34.091 | 176 | 93 | 6 | 56 | 229 | 85 | 239 | 2.65e-20 | 90.5 |
| Msa0228250 | AT2G43680.4 | 30.939 | 181 | 94 | 7 | 61 | 230 | 310 | 470 | 1.11e-17 | 84.0 |
| Msa0228250 | AT2G43680.2 | 30.939 | 181 | 94 | 7 | 61 | 230 | 310 | 470 | 1.11e-17 | 84.0 |
| Msa0228250 | AT2G43680.3 | 30.939 | 181 | 94 | 7 | 61 | 230 | 310 | 470 | 1.11e-17 | 84.0 |
| Msa0228250 | AT2G43680.5 | 30.939 | 181 | 94 | 7 | 61 | 230 | 310 | 470 | 1.11e-17 | 84.0 |
| Msa0228250 | AT2G43680.1 | 30.939 | 181 | 94 | 7 | 61 | 230 | 311 | 471 | 1.12e-17 | 84.0 |
| Msa0228250 | AT3G49260.1 | 25.888 | 197 | 121 | 4 | 75 | 252 | 122 | 312 | 4.67e-17 | 82.0 |
| Msa0228250 | AT3G49260.4 | 25.888 | 197 | 121 | 4 | 75 | 252 | 122 | 312 | 4.67e-17 | 82.0 |
| Msa0228250 | AT3G49260.2 | 25.888 | 197 | 121 | 4 | 75 | 252 | 122 | 312 | 4.67e-17 | 82.0 |
| Msa0228250 | AT3G49260.3 | 25.758 | 198 | 121 | 4 | 75 | 252 | 122 | 313 | 7.68e-17 | 81.3 |
| Msa0228250 | AT4G00820.1 | 27.488 | 211 | 125 | 7 | 48 | 241 | 112 | 311 | 1.44e-15 | 77.4 |
| Msa0228250 | AT1G01110.2 | 24.775 | 222 | 145 | 7 | 38 | 241 | 86 | 303 | 7.74e-13 | 69.3 |
Find 99 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGCATTTCGTTCATTTA+TGG | 0.156996 | 2_1:+80008735 | Msa0228250:CDS |
| ACTATTATTCCCTTCATTTC+AGG | 0.158527 | 2_1:+80011123 | Msa0228250:three_prime_UTR |
| GCCGTTGAGTTTCTTTGTTT+TGG | 0.177224 | 2_1:-80010709 | None:intergenic |
| TTGGTTTCTTCATCTTCTTT+TGG | 0.194840 | 2_1:+80010965 | Msa0228250:three_prime_UTR |
| GTGGTTCATCTTATCTAATT+TGG | 0.248605 | 2_1:-80010745 | None:intergenic |
| GAAGAACATTTCAACATCTA+AGG | 0.257374 | 2_1:+80010061 | Msa0228250:CDS |
| CCAAACTGTAACCAGTATTT+TGG | 0.272065 | 2_1:+80010585 | Msa0228250:CDS |
| CAGCGCGTCCTTGGGAGGTT+CGG | 0.294645 | 2_1:+80010670 | Msa0228250:CDS |
| TTGCATCCTTGTTTCAGTTC+AGG | 0.300797 | 2_1:+80007277 | Msa0228250:five_prime_UTR |
| AATGAAATGAAATGATAATT+AGG | 0.309959 | 2_1:-80007255 | None:intergenic |
| GTTGGGTTGCAGCGCGTCCT+TGG | 0.318135 | 2_1:+80010661 | Msa0228250:CDS |
| CTCCATCATCAAACCTTCAT+TGG | 0.319760 | 2_1:-80008662 | None:intergenic |
| TTCATGTTCTTGCTATTAGA+AGG | 0.344320 | 2_1:+80007603 | Msa0228250:five_prime_UTR |
| CTAATTTGGTCTTCTGCTGC+TGG | 0.344502 | 2_1:-80010731 | None:intergenic |
| AGATTCTCACAAGCCAAATA+TGG | 0.346709 | 2_1:-80010998 | None:intergenic |
| TGTTGTTCCTGTTTGGTCTC+TGG | 0.347194 | 2_1:-80010124 | None:intergenic |
| GTTGTCACACAACACTATTA+TGG | 0.372033 | 2_1:+80007123 | None:intergenic |
| TGGAGAGGACAGTTCCTTCC+AGG | 0.372133 | 2_1:+80008680 | Msa0228250:CDS |
| TTGGAGCTGGATGGAGCGTT+GGG | 0.373478 | 2_1:+80010644 | Msa0228250:CDS |
| CTATTAGAAGGTGCACTTGA+TGG | 0.373672 | 2_1:+80007615 | Msa0228250:exon |
| CCAAAATACTGGTTACAGTT+TGG | 0.386021 | 2_1:-80010585 | None:intergenic |
| GTTGGAGCTGGATGGAGCGT+TGG | 0.388313 | 2_1:+80010643 | Msa0228250:CDS |
| CACTTAACTACATACATTCA+TGG | 0.393069 | 2_1:+80010145 | Msa0228250:CDS |
| GGCATATGCTTTCTCTCATC+AGG | 0.394693 | 2_1:+80010481 | Msa0228250:CDS |
| ACTAAAGCTGCCATGTCAAA+TGG | 0.395308 | 2_1:+80010801 | Msa0228250:CDS |
| TTGGGTTGCAGCGCGTCCTT+GGG | 0.397902 | 2_1:+80010662 | Msa0228250:CDS |
| GAAACAGCTATCTTATTTCA+AGG | 0.401239 | 2_1:-80007583 | None:intergenic |
| GGTCAGGCTTCTTATAGCCT+TGG | 0.403857 | 2_1:+80010606 | Msa0228250:CDS |
| TAGCTGTTTCTCAACAAGAA+TGG | 0.414876 | 2_1:+80007948 | Msa0228250:CDS |
| AGCTGTTTCTCAACAAGAAT+GGG | 0.421083 | 2_1:+80007949 | Msa0228250:CDS |
| AAGAAGCCTGACCAAAATAC+TGG | 0.421606 | 2_1:-80010596 | None:intergenic |
| AGTTAAGTGTTGTTCCTGTT+TGG | 0.425963 | 2_1:-80010131 | None:intergenic |
| CAAGAATGGGTCCAAAGAAA+TGG | 0.430866 | 2_1:+80007962 | Msa0228250:CDS |
| AGCGCGTCCTTGGGAGGTTC+GGG | 0.435357 | 2_1:+80010671 | Msa0228250:CDS |
| GGCTTGTGAGAATCTATCAT+TGG | 0.440940 | 2_1:+80011006 | Msa0228250:three_prime_UTR |
| ATGAGGGCTGTGGTTCCCAT+TGG | 0.445641 | 2_1:-80008620 | None:intergenic |
| AGGGCTGTGGTTCCCATTGG+AGG | 0.449291 | 2_1:-80008617 | None:intergenic |
| TCCATCATCAAACCTTCATT+GGG | 0.455643 | 2_1:-80008661 | None:intergenic |
| GACATGGCAGCTTTAGTCAA+TGG | 0.463459 | 2_1:-80010795 | None:intergenic |
| AAGAAAGCTGGGGTTGGAGC+TGG | 0.466713 | 2_1:+80010631 | Msa0228250:CDS |
| AATCACTGCTCCTGAAATGA+AGG | 0.468044 | 2_1:-80011133 | None:intergenic |
| TTCTTCTCGCTGATGTATCC+TGG | 0.469935 | 2_1:-80010432 | None:intergenic |
| CAGGATTAAGCAAAAGAGAT+TGG | 0.472339 | 2_1:+80010221 | Msa0228250:CDS |
| CTTTCGTTGAAACATGGTAA+TGG | 0.482595 | 2_1:+80011097 | Msa0228250:three_prime_UTR |
| TTGATTCTTCATGAGGGCTG+TGG | 0.486263 | 2_1:-80008630 | None:intergenic |
| CTAAAGCTGCCATGTCAAAT+GGG | 0.486923 | 2_1:+80010802 | Msa0228250:CDS |
| ATAGCCTTGGTAAAGAAAGC+TGG | 0.489924 | 2_1:+80010619 | Msa0228250:CDS |
| GCTTGTGAGAATCTATCATT+GGG | 0.491190 | 2_1:+80011007 | Msa0228250:three_prime_UTR |
| AAGAACATTTCAACATCTAA+GGG | 0.495562 | 2_1:+80010062 | Msa0228250:CDS |
| GTGTTACTTGATTCTTCATG+AGG | 0.498076 | 2_1:-80008637 | None:intergenic |
| TAGCCTTGGTAAAGAAAGCT+GGG | 0.502264 | 2_1:+80010620 | Msa0228250:CDS |
| TTCACAATATTGCTGCTACT+CGG | 0.514388 | 2_1:+80008707 | Msa0228250:CDS |
| TTGGTAAAGAAAGCTGGGGT+TGG | 0.518496 | 2_1:+80010625 | Msa0228250:CDS |
| AGATAAATCAAACCAAGAAA+AGG | 0.519572 | 2_1:+80008020 | Msa0228250:CDS |
| GGGCTGTGGTTCCCATTGGA+GGG | 0.523559 | 2_1:-80008616 | None:intergenic |
| TTATAATCAGAAGGAAGAAA+CGG | 0.527194 | 2_1:+80007992 | Msa0228250:CDS |
| TCAAGTAACACTCCCAATGA+AGG | 0.535092 | 2_1:+80008649 | Msa0228250:CDS |
| TGCTAGCTTTCGTTGAAACA+TGG | 0.535564 | 2_1:+80011091 | Msa0228250:three_prime_UTR |
| TCCCAATGAAGGTTTGATGA+TGG | 0.538229 | 2_1:+80008660 | Msa0228250:CDS |
| CAATCTACTGAACCCTCCAA+TGG | 0.545908 | 2_1:+80008604 | Msa0228250:CDS |
| GTGCAGCGGTTCTGAAACAA+TGG | 0.546419 | 2_1:+80010397 | Msa0228250:CDS |
| ATCGCCATTAAAATCACCAT+TGG | 0.547703 | 2_1:+80010842 | Msa0228250:CDS |
| TTGTAGAGGATGATTAATGA+TGG | 0.548326 | 2_1:-80007210 | None:intergenic |
| AATCTACTGAACCCTCCAAT+GGG | 0.550183 | 2_1:+80008605 | Msa0228250:CDS |
| GACACGGAAGCTTTAGCCAA+TGG | 0.552731 | 2_1:-80010858 | None:intergenic |
| GGTTGCAGCGCGTCCTTGGG+AGG | 0.553914 | 2_1:+80010665 | Msa0228250:CDS |
| CACATGGCCAGAGACCAAAC+AGG | 0.554081 | 2_1:+80010117 | Msa0228250:CDS |
| AATGCGAAGGAGACTGAGAA+AGG | 0.557321 | 2_1:+80010882 | Msa0228250:CDS |
| GGTTTAAAATTATAATCAGA+AGG | 0.564252 | 2_1:+80007983 | Msa0228250:CDS |
| ACTCTCCTTCCCATTTGACA+TGG | 0.564367 | 2_1:-80010811 | None:intergenic |
| AGCTTCCGTGTCAAATGCGA+AGG | 0.566653 | 2_1:+80010869 | Msa0228250:CDS |
| CAATGGAAGAGATACTATCC+AGG | 0.570614 | 2_1:+80010414 | Msa0228250:CDS |
| ATCACTGCTCCTGAAATGAA+GGG | 0.571891 | 2_1:-80011132 | None:intergenic |
| AGTCTCCTTCGCATTTGACA+CGG | 0.580502 | 2_1:-80010874 | None:intergenic |
| CTGTTTGGTCTCTGGCCATG+TGG | 0.581097 | 2_1:-80010116 | None:intergenic |
| AGCTGCCATGTCAAATGGGA+AGG | 0.581376 | 2_1:+80010806 | Msa0228250:CDS |
| TGTGTATGATAACAGCAGCC+AGG | 0.581859 | 2_1:+80010202 | Msa0228250:CDS |
| AACCCCAGCTTTCTTTACCA+AGG | 0.586825 | 2_1:-80010623 | None:intergenic |
| ACTTGAACCCGAACCTCCCA+AGG | 0.587510 | 2_1:-80010678 | None:intergenic |
| TGTTACTTGATTCTTCATGA+GGG | 0.588183 | 2_1:-80008636 | None:intergenic |
| GAAATGAAATGATAATTAGG+AGG | 0.588318 | 2_1:-80007252 | None:intergenic |
| CCAATACCTGAACTGAAACA+AGG | 0.592576 | 2_1:-80007283 | None:intergenic |
| AGCAATATTGTGAATCAACC+TGG | 0.594625 | 2_1:-80008698 | None:intergenic |
| TGAATGTATCCCAGGTGGAA+TGG | 0.600817 | 2_1:+80010375 | Msa0228250:intron |
| CAAGAGGCTTACAATTGTAG+AGG | 0.612368 | 2_1:-80007224 | None:intergenic |
| AGCTTTAATTCAAGACCACA+TGG | 0.613946 | 2_1:+80010101 | Msa0228250:CDS |
| ATGAAGGTTTGATGATGGAG+AGG | 0.619518 | 2_1:+80008665 | Msa0228250:CDS |
| TCCCAGGTGGAATGGTGCAG+CGG | 0.626788 | 2_1:+80010383 | Msa0228250:intron |
| AAGCTGGGGTTGGAGCTGGA+TGG | 0.631067 | 2_1:+80010635 | Msa0228250:CDS |
| CCCAAAACAAAGAAACTCAA+CGG | 0.631804 | 2_1:+80010708 | Msa0228250:CDS |
| ATGAGAGAAAGCATATGCCA+TGG | 0.645984 | 2_1:-80010477 | None:intergenic |
| GGCTAAGATTAATGAGCTCG+AGG | 0.646302 | 2_1:+80010263 | Msa0228250:CDS |
| AATCAAACGAGAGCGAGCCA+TGG | 0.651456 | 2_1:+80010460 | Msa0228250:CDS |
| ATATTGTGAATCAACCTGGA+AGG | 0.653405 | 2_1:-80008694 | None:intergenic |
| TAATTAGGAGGATATACAAG+AGG | 0.670643 | 2_1:-80007240 | None:intergenic |
| AGAACATTTCAACATCTAAG+GGG | 0.685065 | 2_1:+80010063 | Msa0228250:CDS |
| AGCCTTGGTAAAGAAAGCTG+GGG | 0.695007 | 2_1:+80010621 | Msa0228250:CDS |
| TAAGATTAATGAGCTCGAGG+TGG | 0.704063 | 2_1:+80010266 | Msa0228250:CDS |
| TGGATAGTAATGTTAAGACG+TGG | 0.744653 | 2_1:-80007190 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAATGAAATTCTTT+TGG | - | chr2_1:80008359-80008378 | None:intergenic | 10.0% |
| !!! | AGTTTTAAATCAAATTTAAA+TGG | + | chr2_1:80009441-80009460 | Msa0228250:intron | 10.0% |
| !! | AATGAAATGAAATGATAATT+AGG | - | chr2_1:80007258-80007277 | None:intergenic | 15.0% |
| !!! | TTCAAAAGTTTATTTTTTTG+AGG | + | chr2_1:80007662-80007681 | Msa0228250:intron | 15.0% |
| !!! | TCAAAAGTTTATTTTTTTGA+GGG | + | chr2_1:80007663-80007682 | Msa0228250:intron | 15.0% |
| !!! | ATAATTTTAAACCATTTCTT+TGG | - | chr2_1:80007976-80007995 | None:intergenic | 15.0% |
| !!! | TTTGCAAATTTTAAAGTTAA+AGG | - | chr2_1:80008072-80008091 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTTTTATTACTAC+TGG | + | chr2_1:80009549-80009568 | Msa0228250:intron | 15.0% |
| !! | AAAATTATCTGTCATATTAT+GGG | - | chr2_1:80009777-80009796 | None:intergenic | 15.0% |
| !! | TAAAATTATCTGTCATATTA+TGG | - | chr2_1:80009778-80009797 | None:intergenic | 15.0% |
| !! | AAAATTATCTGTCATATTAT+GGG | - | chr2_1:80009777-80009796 | None:intergenic | 15.0% |
| !! | TAAAATTATCTGTCATATTA+TGG | - | chr2_1:80009778-80009797 | None:intergenic | 15.0% |
| !! | CATTTCATATATGAAGAAAA+GGG | + | chr2_1:80007339-80007358 | Msa0228250:intron | 20.0% |
| !! | ATTTCATATATGAAGAAAAG+GGG | + | chr2_1:80007340-80007359 | Msa0228250:intron | 20.0% |
| !! | TATATGTGCATAGTTAATTT+GGG | + | chr2_1:80007480-80007499 | Msa0228250:intron | 20.0% |
| !! | TCATCAAACAAACATTAAAA+GGG | - | chr2_1:80007836-80007855 | None:intergenic | 20.0% |
| !! | TTCATCAAACAAACATTAAA+AGG | - | chr2_1:80007837-80007856 | None:intergenic | 20.0% |
| !!! | GGTTTAAAATTATAATCAGA+AGG | + | chr2_1:80007983-80008002 | Msa0228250:CDS | 20.0% |
| !!! | CAAACTTAGTATTTTCATAA+GGG | - | chr2_1:80009118-80009137 | None:intergenic | 20.0% |
| !! | AAAATTCTATTTCCTTTAAG+TGG | + | chr2_1:80009167-80009186 | Msa0228250:intron | 20.0% |
| !! | ATAAAGTTCTATACTATCAA+AGG | + | chr2_1:80009305-80009324 | Msa0228250:intron | 20.0% |
| !! | TTTCAAACAGTTATAAAAGA+GGG | - | chr2_1:80009678-80009697 | None:intergenic | 20.0% |
| !! | TTTCAAACAGTTATAAAAGA+GGG | - | chr2_1:80009678-80009697 | None:intergenic | 20.0% |
| !! | AATAGAGATAACACTTTAAA+AGG | - | chr2_1:80010321-80010340 | None:intergenic | 20.0% |
| !!! | TCAAATTTTGTTTTCAAGAA+AGG | - | chr2_1:80010533-80010552 | None:intergenic | 20.0% |
| ! | GAAATGAAATGATAATTAGG+AGG | - | chr2_1:80007255-80007274 | None:intergenic | 25.0% |
| ! | TAAAATTGCATCAAAATCCA+AGG | - | chr2_1:80007313-80007332 | None:intergenic | 25.0% |
| !! | CCTTTTCTTCATATATGAAA+TGG | - | chr2_1:80007341-80007360 | None:intergenic | 25.0% |
| ! | CCATTTCATATATGAAGAAA+AGG | + | chr2_1:80007338-80007357 | Msa0228250:intron | 25.0% |
| ! | GTATATGTGCATAGTTAATT+TGG | + | chr2_1:80007479-80007498 | Msa0228250:intron | 25.0% |
| !!! | GATTGATTTTCAGATAGTTT+TGG | + | chr2_1:80007560-80007579 | Msa0228250:five_prime_UTR | 25.0% |
| ! | TTTGTTTGATGAACTCTTAA+CGG | + | chr2_1:80007844-80007863 | Msa0228250:intron | 25.0% |
| !! | TTTGAATATTGATGATATGC+AGG | + | chr2_1:80007918-80007937 | Msa0228250:intron | 25.0% |
| ! | TTATAATCAGAAGGAAGAAA+CGG | + | chr2_1:80007992-80008011 | Msa0228250:CDS | 25.0% |
| ! | AGATAAATCAAACCAAGAAA+AGG | + | chr2_1:80008020-80008039 | Msa0228250:CDS | 25.0% |
| ! | CCTGAAAGAAAATCTAAATT+AGG | - | chr2_1:80008127-80008146 | None:intergenic | 25.0% |
| !! | CCTAATTTAGATTTTCTTTC+AGG | + | chr2_1:80008124-80008143 | Msa0228250:intron | 25.0% |
| !!! | TTTTCTGTTTTAGTTGCATT+AGG | + | chr2_1:80008186-80008205 | Msa0228250:intron | 25.0% |
| !!! | TTTCTGTTTTAGTTGCATTA+GGG | + | chr2_1:80008187-80008206 | Msa0228250:intron | 25.0% |
| ! | ATTGTCATAATACACATTTC+TGG | + | chr2_1:80008282-80008301 | Msa0228250:intron | 25.0% |
| !! | TATGAGTTGACTAAAAAGTA+TGG | + | chr2_1:80008332-80008351 | Msa0228250:intron | 25.0% |
| !! | TATGAGTTGACTAAAAAGTA+TGG | + | chr2_1:80008332-80008351 | Msa0228250:intron | 25.0% |
| !! | AACGAAAAGTACAAATTTGA+AGG | + | chr2_1:80008476-80008495 | Msa0228250:intron | 25.0% |
| !! | ACGAAAAGTACAAATTTGAA+GGG | + | chr2_1:80008477-80008496 | Msa0228250:intron | 25.0% |
| ! | AAATGCATTTCGTTCATTTA+TGG | + | chr2_1:80008735-80008754 | Msa0228250:CDS | 25.0% |
| ! | TGTGAAAATTGTAGTAGAAA+TGG | - | chr2_1:80008795-80008814 | None:intergenic | 25.0% |
| ! | TAAAAATCACGAAATGCATA+AGG | - | chr2_1:80008865-80008884 | None:intergenic | 25.0% |
| !! | TTATGCATTTCGTGATTTTT+AGG | + | chr2_1:80008864-80008883 | Msa0228250:intron | 25.0% |
| !! | AGATGAGCTTTTTAATCTTA+CGG | - | chr2_1:80008926-80008945 | None:intergenic | 25.0% |
| ! | TAGTTCAAAAAACCAAAGTT+AGG | - | chr2_1:80008949-80008968 | None:intergenic | 25.0% |
| !! | GCAAACTTAGTATTTTCATA+AGG | - | chr2_1:80009119-80009138 | None:intergenic | 25.0% |
| !! | GAATATTTTGTATTTCCTCA+AGG | + | chr2_1:80009477-80009496 | Msa0228250:intron | 25.0% |
| !!! | TTGATAATGACTTTAGAACA+TGG | + | chr2_1:80009511-80009530 | Msa0228250:intron | 25.0% |
| ! | AACTTAAAGCAATTATGTTC+AGG | + | chr2_1:80009581-80009600 | Msa0228250:intron | 25.0% |
| ! | CTTTCAAACAGTTATAAAAG+AGG | - | chr2_1:80009679-80009698 | None:intergenic | 25.0% |
| ! | AAGTATAGAAAAACAGATGA+GGG | - | chr2_1:80009711-80009730 | None:intergenic | 25.0% |
| ! | TAAGTATAGAAAAACAGATG+AGG | - | chr2_1:80009712-80009731 | None:intergenic | 25.0% |
| !!! | TAATTAACTTGTTGTCAAGA+AGG | - | chr2_1:80009735-80009754 | None:intergenic | 25.0% |
| ! | CTTTCAAACAGTTATAAAAG+AGG | - | chr2_1:80009679-80009698 | None:intergenic | 25.0% |
| ! | AAGTATAGAAAAACAGATGA+GGG | - | chr2_1:80009711-80009730 | None:intergenic | 25.0% |
| ! | TAAGTATAGAAAAACAGATG+AGG | - | chr2_1:80009712-80009731 | None:intergenic | 25.0% |
| !!! | TAATTAACTTGTTGTCAAGA+AGG | - | chr2_1:80009735-80009754 | None:intergenic | 25.0% |
| !! | AATCGACATTTCTAAAGATA+GGG | - | chr2_1:80009949-80009968 | None:intergenic | 25.0% |
| !! | AAATCGACATTTCTAAAGAT+AGG | - | chr2_1:80009950-80009969 | None:intergenic | 25.0% |
| ! | AAGAACATTTCAACATCTAA+GGG | + | chr2_1:80010062-80010081 | Msa0228250:CDS | 25.0% |
| ! | AAATTTGACTACTAATGTCA+AGG | + | chr2_1:80010545-80010564 | Msa0228250:intron | 25.0% |
| !! | TTAGTCAATGGTGATTTTAA+TGG | - | chr2_1:80010786-80010805 | None:intergenic | 25.0% |
| ! | GAAAGAAAAACAAAACATGA+GGG | + | chr2_1:80010904-80010923 | Msa0228250:CDS | 25.0% |
| TTGTAGAGGATGATTAATGA+TGG | - | chr2_1:80007213-80007232 | None:intergenic | 30.0% | |
| TAATTAGGAGGATATACAAG+AGG | - | chr2_1:80007243-80007262 | None:intergenic | 30.0% | |
| ATGCAGTGTAATTCTATTTG+AGG | - | chr2_1:80007527-80007546 | None:intergenic | 30.0% | |
| AGAATTACACTGCATTAACT+TGG | + | chr2_1:80007532-80007551 | Msa0228250:intron | 30.0% | |
| ! | GAAACAGCTATCTTATTTCA+AGG | - | chr2_1:80007586-80007605 | None:intergenic | 30.0% |
| !! | TTCATGTTCTTGCTATTAGA+AGG | + | chr2_1:80007603-80007622 | Msa0228250:five_prime_UTR | 30.0% |
| TGATTTCAACTTTCAGTTTG+TGG | - | chr2_1:80007775-80007794 | None:intergenic | 30.0% | |
| ! | GAAAGGAAAAAACCTTTTCT+TGG | - | chr2_1:80008035-80008054 | None:intergenic | 30.0% |
| TTAGTTGACTAATGAGGATT+TGG | + | chr2_1:80008148-80008167 | Msa0228250:intron | 30.0% | |
| TAGTTGACTAATGAGGATTT+GGG | + | chr2_1:80008149-80008168 | Msa0228250:intron | 30.0% | |
| !! | GCATTAGGGTTTTAATATGT+TGG | + | chr2_1:80008201-80008220 | Msa0228250:intron | 30.0% |
| ! | AAGTTTTTCACCACTACTTT+TGG | - | chr2_1:80008415-80008434 | None:intergenic | 30.0% |
| ! | TAGTGGTGAAAAACTTTTGA+GGG | + | chr2_1:80008419-80008438 | Msa0228250:intron | 30.0% |
| ! | AGACGAGTCATATATGTTTT+TGG | - | chr2_1:80008504-80008523 | None:intergenic | 30.0% |
| ! | AAGACATTTTTACCTTGCTT+TGG | + | chr2_1:80008534-80008553 | Msa0228250:intron | 30.0% |
| ! | TGTTACTTGATTCTTCATGA+GGG | - | chr2_1:80008639-80008658 | None:intergenic | 30.0% |
| TTTGTGTAAACTTGATCCAA+CGG | + | chr2_1:80008990-80009009 | Msa0228250:intron | 30.0% | |
| CATGATTCCTTAACTACATA+GGG | + | chr2_1:80009039-80009058 | Msa0228250:intron | 30.0% | |
| ! | TTTTCATAAGGGTTAAGCAT+AGG | - | chr2_1:80009107-80009126 | None:intergenic | 30.0% |
| ! | ATTTTTGCTTTAGTAGACGA+AGG | - | chr2_1:80009152-80009171 | None:intergenic | 30.0% |
| AACTAGACTATCACTAAAGA+AGG | - | chr2_1:80009425-80009444 | None:intergenic | 30.0% | |
| TCAAAGTAAATGATACCTTG+AGG | - | chr2_1:80009495-80009514 | None:intergenic | 30.0% | |
| AAAAAAAGTGAAGACACTAG+TGG | - | chr2_1:80009538-80009557 | None:intergenic | 30.0% | |
| ! | ATCGACATTTCTAAAGATAG+GGG | - | chr2_1:80009948-80009967 | None:intergenic | 30.0% |
| GAAGAACATTTCAACATCTA+AGG | + | chr2_1:80010061-80010080 | Msa0228250:CDS | 30.0% | |
| AGAACATTTCAACATCTAAG+GGG | + | chr2_1:80010063-80010082 | Msa0228250:CDS | 30.0% | |
| CACTTAACTACATACATTCA+TGG | + | chr2_1:80010145-80010164 | Msa0228250:CDS | 30.0% | |
| GGAAAGTCAGTTAAAAATTG+AGG | + | chr2_1:80010242-80010261 | Msa0228250:CDS | 30.0% | |
| TCAAGAAAGGATAAATCAAG+TGG | - | chr2_1:80010520-80010539 | None:intergenic | 30.0% | |
| GTGGTTCATCTTATCTAATT+TGG | - | chr2_1:80010748-80010767 | None:intergenic | 30.0% | |
| !! | ATGGAGATTTTGTTTCATTG+TGG | - | chr2_1:80010767-80010786 | None:intergenic | 30.0% |
| ! | TTAGCCAATGGTGATTTTAA+TGG | - | chr2_1:80010849-80010868 | None:intergenic | 30.0% |
| GGAAAGAAAAACAAAACATG+AGG | + | chr2_1:80010903-80010922 | Msa0228250:CDS | 30.0% | |
| ! | TTGGTTTCTTCATCTTCTTT+TGG | + | chr2_1:80010965-80010984 | Msa0228250:three_prime_UTR | 30.0% |
| ! | TGGTTTCTTCATCTTCTTTT+GGG | + | chr2_1:80010966-80010985 | Msa0228250:three_prime_UTR | 30.0% |
| !! | TGGGGTTTATTTTCCATATT+TGG | + | chr2_1:80010985-80011004 | Msa0228250:three_prime_UTR | 30.0% |
| ACTATTATTCCCTTCATTTC+AGG | + | chr2_1:80011123-80011142 | Msa0228250:three_prime_UTR | 30.0% | |
| TGGATAGTAATGTTAAGACG+TGG | - | chr2_1:80007193-80007212 | None:intergenic | 35.0% | |
| CATATATGAAGAAAAGGGGT+TGG | + | chr2_1:80007344-80007363 | Msa0228250:intron | 35.0% | |
| ! | ACACTGCATTAACTTGGTTT+AGG | + | chr2_1:80007538-80007557 | Msa0228250:intron | 35.0% |
| !! | TAGCTGTTTCTCAACAAGAA+TGG | + | chr2_1:80007948-80007967 | Msa0228250:CDS | 35.0% |
| !! | AGCTGTTTCTCAACAAGAAT+GGG | + | chr2_1:80007949-80007968 | Msa0228250:CDS | 35.0% |
| TTGCAAACATGATGAGAGTT+TGG | + | chr2_1:80008085-80008104 | Msa0228250:intron | 35.0% | |
| !! | TCAGGATTAGTTGACTAATG+AGG | + | chr2_1:80008142-80008161 | Msa0228250:intron | 35.0% |
| AAAGTATGGACCAAAAGTAG+TGG | + | chr2_1:80008402-80008421 | Msa0228250:intron | 35.0% | |
| ! | GTAGTGGTGAAAAACTTTTG+AGG | + | chr2_1:80008418-80008437 | Msa0228250:intron | 35.0% |
| AAGAGAACAAGAAACAACAC+TGG | - | chr2_1:80008565-80008584 | None:intergenic | 35.0% | |
| !! | GTGTTACTTGATTCTTCATG+AGG | - | chr2_1:80008640-80008659 | None:intergenic | 35.0% |
| TCCATCATCAAACCTTCATT+GGG | - | chr2_1:80008664-80008683 | None:intergenic | 35.0% | |
| ATATTGTGAATCAACCTGGA+AGG | - | chr2_1:80008697-80008716 | None:intergenic | 35.0% | |
| AGCAATATTGTGAATCAACC+TGG | - | chr2_1:80008701-80008720 | None:intergenic | 35.0% | |
| TTCACAATATTGCTGCTACT+CGG | + | chr2_1:80008707-80008726 | Msa0228250:CDS | 35.0% | |
| AAAAGCTCATCTCCTAACTT+TGG | + | chr2_1:80008934-80008953 | Msa0228250:intron | 35.0% | |
| TTTGATGCAATCATACGATC+TGG | - | chr2_1:80009017-80009036 | None:intergenic | 35.0% | |
| CCTATGTAGTTAAGGAATCA+TGG | - | chr2_1:80009041-80009060 | None:intergenic | 35.0% | |
| CCATGATTCCTTAACTACAT+AGG | + | chr2_1:80009038-80009057 | Msa0228250:intron | 35.0% | |
| CTAGATTCCCTATGTAGTTA+AGG | - | chr2_1:80009049-80009068 | None:intergenic | 35.0% | |
| CTTAACTACATAGGGAATCT+AGG | + | chr2_1:80009047-80009066 | Msa0228250:intron | 35.0% | |
| !! | AGTTAGAAGGTACCACTTAA+AGG | - | chr2_1:80009182-80009201 | None:intergenic | 35.0% |
| TGATTGCAAGGAAAGTTAGA+AGG | - | chr2_1:80009195-80009214 | None:intergenic | 35.0% | |
| TTTCCTTGCAATCATAGACA+TGG | + | chr2_1:80009201-80009220 | Msa0228250:intron | 35.0% | |
| CAACTTAACAAAGTGACATG+AGG | + | chr2_1:80009257-80009276 | Msa0228250:intron | 35.0% | |
| ! | AGCTTTAATTCAAGACCACA+TGG | + | chr2_1:80010101-80010120 | Msa0228250:CDS | 35.0% |
| ! | AGTTAAGTGTTGTTCCTGTT+TGG | - | chr2_1:80010134-80010153 | None:intergenic | 35.0% |
| ! | CAATCTCTTTTGCTTAATCC+TGG | - | chr2_1:80010223-80010242 | None:intergenic | 35.0% |
| CAGGATTAAGCAAAAGAGAT+TGG | + | chr2_1:80010221-80010240 | Msa0228250:CDS | 35.0% | |
| ATGTCAAGGTAATATTGCAG+TGG | + | chr2_1:80010559-80010578 | Msa0228250:intron | 35.0% | |
| ! | CCAAAATACTGGTTACAGTT+TGG | - | chr2_1:80010588-80010607 | None:intergenic | 35.0% |
| ! | CCAAACTGTAACCAGTATTT+TGG | + | chr2_1:80010585-80010604 | Msa0228250:CDS | 35.0% |
| !!! | GTTGAGTTTCTTTGTTTTGG+GGG | - | chr2_1:80010709-80010728 | None:intergenic | 35.0% |
| !!! | CGTTGAGTTTCTTTGTTTTG+GGG | - | chr2_1:80010710-80010729 | None:intergenic | 35.0% |
| !!! | CCGTTGAGTTTCTTTGTTTT+GGG | - | chr2_1:80010711-80010730 | None:intergenic | 35.0% |
| CCCAAAACAAAGAAACTCAA+CGG | + | chr2_1:80010708-80010727 | Msa0228250:CDS | 35.0% | |
| ATCGCCATTAAAATCACCAT+TGG | + | chr2_1:80010842-80010861 | Msa0228250:CDS | 35.0% | |
| ! | TTTTCTGCCTCAGCATTTTT+TGG | - | chr2_1:80010933-80010952 | None:intergenic | 35.0% |
| CAGAAAAATTGAATGGCTCT+TGG | + | chr2_1:80010946-80010965 | Msa0228250:three_prime_UTR | 35.0% | |
| ! | GGTTTCTTCATCTTCTTTTG+GGG | + | chr2_1:80010967-80010986 | Msa0228250:three_prime_UTR | 35.0% |
| AGATTCTCACAAGCCAAATA+TGG | - | chr2_1:80011001-80011020 | None:intergenic | 35.0% | |
| GCTTGTGAGAATCTATCATT+GGG | + | chr2_1:80011007-80011026 | Msa0228250:three_prime_UTR | 35.0% | |
| CTTTCGTTGAAACATGGTAA+TGG | + | chr2_1:80011097-80011116 | Msa0228250:three_prime_UTR | 35.0% | |
| CAAGAGGCTTACAATTGTAG+AGG | - | chr2_1:80007227-80007246 | None:intergenic | 40.0% | |
| ! | TTGCATCCTTGTTTCAGTTC+AGG | + | chr2_1:80007277-80007296 | Msa0228250:five_prime_UTR | 40.0% |
| CCAATACCTGAACTGAAACA+AGG | - | chr2_1:80007286-80007305 | None:intergenic | 40.0% | |
| ! | CCTTGTTTCAGTTCAGGTAT+TGG | + | chr2_1:80007283-80007302 | Msa0228250:intron | 40.0% |
| ! | CTATTAGAAGGTGCACTTGA+TGG | + | chr2_1:80007615-80007634 | Msa0228250:exon | 40.0% |
| CAAGAATGGGTCCAAAGAAA+TGG | + | chr2_1:80007962-80007981 | Msa0228250:CDS | 40.0% | |
| AGGACTGAAAAGAGAGAGAA+AGG | - | chr2_1:80008052-80008071 | None:intergenic | 40.0% | |
| TCTCTTAGCACTCTTTGAAC+AGG | + | chr2_1:80008579-80008598 | Msa0228250:intron | 40.0% | |
| AATCTACTGAACCCTCCAAT+GGG | + | chr2_1:80008605-80008624 | Msa0228250:CDS | 40.0% | |
| TCAAGTAACACTCCCAATGA+AGG | + | chr2_1:80008649-80008668 | Msa0228250:CDS | 40.0% | |
| TCCCAATGAAGGTTTGATGA+TGG | + | chr2_1:80008660-80008679 | Msa0228250:CDS | 40.0% | |
| CTCCATCATCAAACCTTCAT+TGG | - | chr2_1:80008665-80008684 | None:intergenic | 40.0% | |
| !! | ATGAAGGTTTGATGATGGAG+AGG | + | chr2_1:80008665-80008684 | Msa0228250:CDS | 40.0% |
| ! | TCATTGACTGCATGATTGGA+TGG | - | chr2_1:80008897-80008916 | None:intergenic | 40.0% |
| ! | CAGATCATTGACTGCATGAT+TGG | - | chr2_1:80008901-80008920 | None:intergenic | 40.0% |
| !! | ACAGCTCTCTGATTTTGGAA+GGG | + | chr2_1:80009605-80009624 | Msa0228250:intron | 40.0% |
| TTGGAAGGGGAATTAAGTCA+TGG | + | chr2_1:80009619-80009638 | Msa0228250:intron | 40.0% | |
| TGGAAGGGGAATTAAGTCAT+GGG | + | chr2_1:80009620-80009639 | Msa0228250:intron | 40.0% | |
| TTGCCTGCATACATAGGTAT+GGG | - | chr2_1:80010041-80010060 | None:intergenic | 40.0% | |
| TTCTTCTTGCCTGCATACAT+AGG | - | chr2_1:80010047-80010066 | None:intergenic | 40.0% | |
| TAAGATTAATGAGCTCGAGG+TGG | + | chr2_1:80010266-80010285 | Msa0228250:CDS | 40.0% | |
| ! | ACGTTTTGTGAATGTATCCC+AGG | + | chr2_1:80010367-80010386 | Msa0228250:intron | 40.0% |
| ! | TTTTGTGAATGTATCCCAGG+TGG | + | chr2_1:80010370-80010389 | Msa0228250:intron | 40.0% |
| CAATGGAAGAGATACTATCC+AGG | + | chr2_1:80010414-80010433 | Msa0228250:CDS | 40.0% | |
| ! | ATGAGAGAAAGCATATGCCA+TGG | - | chr2_1:80010480-80010499 | None:intergenic | 40.0% |
| TCAAGGTAATATTGCAGTGG+AGG | + | chr2_1:80010562-80010581 | Msa0228250:intron | 40.0% | |
| !!! | CTGTAACCAGTATTTTGGTC+AGG | + | chr2_1:80010590-80010609 | Msa0228250:CDS | 40.0% |
| AAGAAGCCTGACCAAAATAC+TGG | - | chr2_1:80010599-80010618 | None:intergenic | 40.0% | |
| ! | ATAGCCTTGGTAAAGAAAGC+TGG | + | chr2_1:80010619-80010638 | Msa0228250:CDS | 40.0% |
| ! | TAGCCTTGGTAAAGAAAGCT+GGG | + | chr2_1:80010620-80010639 | Msa0228250:CDS | 40.0% |
| !! | GCCGTTGAGTTTCTTTGTTT+TGG | - | chr2_1:80010712-80010731 | None:intergenic | 40.0% |
| ACTAAAGCTGCCATGTCAAA+TGG | + | chr2_1:80010801-80010820 | Msa0228250:CDS | 40.0% | |
| CTAAAGCTGCCATGTCAAAT+GGG | + | chr2_1:80010802-80010821 | Msa0228250:CDS | 40.0% | |
| GCTGAGGCAGAAAAATTGAA+TGG | + | chr2_1:80010939-80010958 | Msa0228250:three_prime_UTR | 40.0% | |
| GGCTTGTGAGAATCTATCAT+TGG | + | chr2_1:80011006-80011025 | Msa0228250:three_prime_UTR | 40.0% | |
| !! | TGCTAGCTTTCGTTGAAACA+TGG | + | chr2_1:80011091-80011110 | Msa0228250:three_prime_UTR | 40.0% |
| ATCACTGCTCCTGAAATGAA+GGG | - | chr2_1:80011135-80011154 | None:intergenic | 40.0% | |
| AATCACTGCTCCTGAAATGA+AGG | - | chr2_1:80011136-80011155 | None:intergenic | 40.0% | |
| !! | GTTCAGGTATTGGAACTCCT+TGG | + | chr2_1:80007293-80007312 | Msa0228250:intron | 45.0% |
| CAATCTACTGAACCCTCCAA+TGG | + | chr2_1:80008604-80008623 | Msa0228250:CDS | 45.0% | |
| TTGATTCTTCATGAGGGCTG+TGG | - | chr2_1:80008633-80008652 | None:intergenic | 45.0% | |
| AATCATACGATCTGGACCGT+TGG | - | chr2_1:80009009-80009028 | None:intergenic | 45.0% | |
| CAGCCATGTCTATGATTGCA+AGG | - | chr2_1:80009207-80009226 | None:intergenic | 45.0% | |
| ! | CACAGCTCTCTGATTTTGGA+AGG | + | chr2_1:80009604-80009623 | Msa0228250:intron | 45.0% |
| !! | CAGCTCTCTGATTTTGGAAG+GGG | + | chr2_1:80009606-80009625 | Msa0228250:intron | 45.0% |
| TGCCTGCATACATAGGTATG+GGG | - | chr2_1:80010040-80010059 | None:intergenic | 45.0% | |
| CTTGCCTGCATACATAGGTA+TGG | - | chr2_1:80010042-80010061 | None:intergenic | 45.0% | |
| TGTTGTTCCTGTTTGGTCTC+TGG | - | chr2_1:80010127-80010146 | None:intergenic | 45.0% | |
| TGTGTATGATAACAGCAGCC+AGG | + | chr2_1:80010202-80010221 | Msa0228250:CDS | 45.0% | |
| GGCTAAGATTAATGAGCTCG+AGG | + | chr2_1:80010263-80010282 | Msa0228250:CDS | 45.0% | |
| TGAATGTATCCCAGGTGGAA+TGG | + | chr2_1:80010375-80010394 | Msa0228250:intron | 45.0% | |
| TTCTTCTCGCTGATGTATCC+TGG | - | chr2_1:80010435-80010454 | None:intergenic | 45.0% | |
| GGCATATGCTTTCTCTCATC+AGG | + | chr2_1:80010481-80010500 | Msa0228250:CDS | 45.0% | |
| AGCCTTGGTAAAGAAAGCTG+GGG | + | chr2_1:80010621-80010640 | Msa0228250:CDS | 45.0% | |
| AACCCCAGCTTTCTTTACCA+AGG | - | chr2_1:80010626-80010645 | None:intergenic | 45.0% | |
| TTGGTAAAGAAAGCTGGGGT+TGG | + | chr2_1:80010625-80010644 | Msa0228250:CDS | 45.0% | |
| ! | CTAATTTGGTCTTCTGCTGC+TGG | - | chr2_1:80010734-80010753 | None:intergenic | 45.0% |
| ! | GACATGGCAGCTTTAGTCAA+TGG | - | chr2_1:80010798-80010817 | None:intergenic | 45.0% |
| ACTCTCCTTCCCATTTGACA+TGG | - | chr2_1:80010814-80010833 | None:intergenic | 45.0% | |
| AGTCTCCTTCGCATTTGACA+CGG | - | chr2_1:80010877-80010896 | None:intergenic | 45.0% | |
| AATGCGAAGGAGACTGAGAA+AGG | + | chr2_1:80010882-80010901 | Msa0228250:CDS | 45.0% | |
| !!! | TTTAAAAGATTATAATATTT+TGG | + | chr2_1:80008253-80008272 | Msa0228250:intron | 5.0% |
| !!! | TTAAAAGATTATAATATTTT+GGG | + | chr2_1:80008254-80008273 | Msa0228250:intron | 5.0% |
| !! | TAATATACAAAAATAAAAAA+TGG | + | chr2_1:80008967-80008986 | Msa0228250:intron | 5.0% |
| ACACTGGATGTGCCAAAGCA+AGG | - | chr2_1:80008549-80008568 | None:intergenic | 50.0% | |
| ! | CAGGCACAGCTCTCTGATTT+TGG | + | chr2_1:80009600-80009619 | Msa0228250:intron | 50.0% |
| GCCTGCATACATAGGTATGG+GGG | - | chr2_1:80010039-80010058 | None:intergenic | 50.0% | |
| !! | GTGCAGCGGTTCTGAAACAA+TGG | + | chr2_1:80010397-80010416 | Msa0228250:CDS | 50.0% |
| AATCAAACGAGAGCGAGCCA+TGG | + | chr2_1:80010460-80010479 | Msa0228250:CDS | 50.0% | |
| GGTCAGGCTTCTTATAGCCT+TGG | + | chr2_1:80010606-80010625 | Msa0228250:CDS | 50.0% | |
| AGCTGCCATGTCAAATGGGA+AGG | + | chr2_1:80010806-80010825 | Msa0228250:CDS | 50.0% | |
| ! | GACACGGAAGCTTTAGCCAA+TGG | - | chr2_1:80010861-80010880 | None:intergenic | 50.0% |
| AGCTTCCGTGTCAAATGCGA+AGG | + | chr2_1:80010869-80010888 | Msa0228250:CDS | 50.0% | |
| AGGGCTGCCAAAAAATGCTG+AGG | + | chr2_1:80010923-80010942 | Msa0228250:exon | 50.0% | |
| ATGAGGGCTGTGGTTCCCAT+TGG | - | chr2_1:80008623-80008642 | None:intergenic | 55.0% | |
| TGGAGAGGACAGTTCCTTCC+AGG | + | chr2_1:80008680-80008699 | Msa0228250:CDS | 55.0% | |
| GCCCCCATACCTATGTATGC+AGG | + | chr2_1:80010035-80010054 | Msa0228250:intron | 55.0% | |
| CTGTTTGGTCTCTGGCCATG+TGG | - | chr2_1:80010119-80010138 | None:intergenic | 55.0% | |
| CACATGGCCAGAGACCAAAC+AGG | + | chr2_1:80010117-80010136 | Msa0228250:CDS | 55.0% | |
| AAGAAAGCTGGGGTTGGAGC+TGG | + | chr2_1:80010631-80010650 | Msa0228250:CDS | 55.0% | |
| ! | TTGGAGCTGGATGGAGCGTT+GGG | + | chr2_1:80010644-80010663 | Msa0228250:CDS | 55.0% |
| ACTTGAACCCGAACCTCCCA+AGG | - | chr2_1:80010681-80010700 | None:intergenic | 55.0% | |
| GGGCTGTGGTTCCCATTGGA+GGG | - | chr2_1:80008619-80008638 | None:intergenic | 60.0% | |
| AGGGCTGTGGTTCCCATTGG+AGG | - | chr2_1:80008620-80008639 | None:intergenic | 60.0% | |
| TCCCAGGTGGAATGGTGCAG+CGG | + | chr2_1:80010383-80010402 | Msa0228250:intron | 60.0% | |
| ACCGCTGCACCATTCCACCT+GGG | - | chr2_1:80010387-80010406 | None:intergenic | 60.0% | |
| AACCGCTGCACCATTCCACC+TGG | - | chr2_1:80010388-80010407 | None:intergenic | 60.0% | |
| AAGCTGGGGTTGGAGCTGGA+TGG | + | chr2_1:80010635-80010654 | Msa0228250:CDS | 60.0% | |
| GTTGGAGCTGGATGGAGCGT+TGG | + | chr2_1:80010643-80010662 | Msa0228250:CDS | 60.0% | |
| ! | TTGGGTTGCAGCGCGTCCTT+GGG | + | chr2_1:80010662-80010681 | Msa0228250:CDS | 60.0% |
| ! | GTTGGGTTGCAGCGCGTCCT+TGG | + | chr2_1:80010661-80010680 | Msa0228250:CDS | 65.0% |
| CAGCGCGTCCTTGGGAGGTT+CGG | + | chr2_1:80010670-80010689 | Msa0228250:CDS | 65.0% | |
| AGCGCGTCCTTGGGAGGTTC+GGG | + | chr2_1:80010671-80010690 | Msa0228250:CDS | 65.0% | |
| GGTTGCAGCGCGTCCTTGGG+AGG | + | chr2_1:80010665-80010684 | Msa0228250:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 80007133 | 80011203 | 80007133 | ID=Msa0228250;Name=Msa0228250 |
| chr2_1 | mRNA | 80007133 | 80011203 | 80007133 | ID=Msa0228250-mRNA-1;Parent=Msa0228250;Name=Msa0228250-mRNA-1;_AED=0.11;_eAED=0.11;_QI=240|0.83|0.85|1|0.5|0.57|7|280|316 |
| chr2_1 | exon | 80007133 | 80007298 | 80007133 | ID=Msa0228250-mRNA-1:exon:24294;Parent=Msa0228250-mRNA-1 |
| chr2_1 | exon | 80007560 | 80007636 | 80007560 | ID=Msa0228250-mRNA-1:exon:24295;Parent=Msa0228250-mRNA-1 |
| chr2_1 | exon | 80007940 | 80008041 | 80007940 | ID=Msa0228250-mRNA-1:exon:24296;Parent=Msa0228250-mRNA-1 |
| chr2_1 | exon | 80008601 | 80008756 | 80008601 | ID=Msa0228250-mRNA-1:exon:24297;Parent=Msa0228250-mRNA-1 |
| chr2_1 | exon | 80010057 | 80010287 | 80010057 | ID=Msa0228250-mRNA-1:exon:24298;Parent=Msa0228250-mRNA-1 |
| chr2_1 | exon | 80010389 | 80010502 | 80010389 | ID=Msa0228250-mRNA-1:exon:24299;Parent=Msa0228250-mRNA-1 |
| chr2_1 | exon | 80010579 | 80011203 | 80010579 | ID=Msa0228250-mRNA-1:exon:24300;Parent=Msa0228250-mRNA-1 |
| chr2_1 | five_prime_UTR | 80007133 | 80007298 | 80007133 | ID=Msa0228250-mRNA-1:five_prime_utr;Parent=Msa0228250-mRNA-1 |
| chr2_1 | five_prime_UTR | 80007560 | 80007633 | 80007560 | ID=Msa0228250-mRNA-1:five_prime_utr;Parent=Msa0228250-mRNA-1 |
| chr2_1 | CDS | 80007634 | 80007636 | 80007634 | ID=Msa0228250-mRNA-1:cds;Parent=Msa0228250-mRNA-1 |
| chr2_1 | CDS | 80007940 | 80008041 | 80007940 | ID=Msa0228250-mRNA-1:cds;Parent=Msa0228250-mRNA-1 |
| chr2_1 | CDS | 80008601 | 80008756 | 80008601 | ID=Msa0228250-mRNA-1:cds;Parent=Msa0228250-mRNA-1 |
| chr2_1 | CDS | 80010057 | 80010287 | 80010057 | ID=Msa0228250-mRNA-1:cds;Parent=Msa0228250-mRNA-1 |
| chr2_1 | CDS | 80010389 | 80010502 | 80010389 | ID=Msa0228250-mRNA-1:cds;Parent=Msa0228250-mRNA-1 |
| chr2_1 | CDS | 80010579 | 80010923 | 80010579 | ID=Msa0228250-mRNA-1:cds;Parent=Msa0228250-mRNA-1 |
| chr2_1 | three_prime_UTR | 80010924 | 80011203 | 80010924 | ID=Msa0228250-mRNA-1:three_prime_utr;Parent=Msa0228250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
