Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726330 | XP_024639127.1 | 99.002 | 501 | 4 | 1 | 1 | 501 | 5 | 504 | 0.0 | 1022 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726330 | A0A072UPS9 | 99.002 | 501 | 4 | 1 | 1 | 501 | 5 | 504 | 0.0 | 1022 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018060 | Msa0726330 | 0.813184 | 2.910941e-51 | -8.615850e-47 |
| Msa0052380 | Msa0726330 | 0.828671 | 7.897074e-55 | -8.615850e-47 |
| Msa0097390 | Msa0726330 | 0.813709 | 2.230967e-51 | -8.615850e-47 |
| Msa0618050 | Msa0726330 | 0.832338 | 1.000509e-55 | -8.615850e-47 |
| Msa0726330 | Msa1037550 | 0.815107 | 1.095145e-51 | -8.615850e-47 |
| Msa0726330 | Msa1199260 | 0.829991 | 3.776849e-55 | -8.615850e-47 |
| Msa0726330 | Msa1199270 | 0.803912 | 2.778869e-49 | -8.615850e-47 |
| Msa0726330 | Msa1418990 | 0.810274 | 1.250411e-50 | -8.615850e-47 |
| Msa0199960 | Msa0726330 | 0.802042 | 6.768288e-49 | -8.615850e-47 |
| Msa0228250 | Msa0726330 | 0.808027 | 3.788778e-50 | -8.615850e-47 |
| Msa0294720 | Msa0726330 | 0.801776 | 7.674464e-49 | -8.615850e-47 |
| Msa0485970 | Msa0726330 | 0.829291 | 5.587665e-55 | -8.615850e-47 |
| Msa0564950 | Msa0726330 | 0.831314 | 1.791204e-55 | -8.615850e-47 |
| Msa0580580 | Msa0726330 | 0.841423 | 4.796413e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726330 | MtrunA17_Chr5g0418171 | 99.002 | 501 | 4 | 1 | 1 | 501 | 5 | 504 | 0.0 | 1022 |
| Msa0726330 | MtrunA17_Chr7g0218061 | 50.725 | 552 | 204 | 8 | 14 | 499 | 1 | 550 | 0.0 | 534 |
| Msa0726330 | MtrunA17_Chr5g0415321 | 43.778 | 450 | 206 | 8 | 85 | 492 | 38 | 482 | 9.91e-113 | 342 |
| Msa0726330 | MtrunA17_Chr6g0452251 | 39.655 | 406 | 241 | 2 | 87 | 492 | 37 | 438 | 1.53e-98 | 304 |
| Msa0726330 | MtrunA17_Chr4g0065381 | 26.122 | 245 | 138 | 10 | 244 | 484 | 468 | 673 | 9.10e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726330 | AT1G13970.1 | 54.753 | 526 | 171 | 11 | 14 | 497 | 1 | 501 | 0.0 | 526 |
| Msa0726330 | AT3G29180.3 | 53.247 | 462 | 144 | 6 | 107 | 500 | 51 | 508 | 4.21e-166 | 479 |
| Msa0726330 | AT3G29180.1 | 53.247 | 462 | 144 | 6 | 107 | 500 | 51 | 508 | 4.21e-166 | 479 |
| Msa0726330 | AT3G29180.2 | 53.247 | 462 | 144 | 6 | 107 | 500 | 51 | 508 | 4.21e-166 | 479 |
| Msa0726330 | AT5G39430.1 | 51.134 | 485 | 162 | 7 | 85 | 500 | 27 | 505 | 1.31e-154 | 450 |
| Msa0726330 | AT1G59650.1 | 59.559 | 272 | 109 | 1 | 222 | 492 | 214 | 485 | 4.96e-118 | 356 |
| Msa0726330 | AT1G10410.1 | 51.877 | 293 | 141 | 0 | 200 | 492 | 188 | 480 | 1.74e-106 | 326 |
Find 127 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAACACCAATTCTTTA+AGG | 0.142848 | 5_1:+27082608 | Msa0726330:CDS |
| TACTGGAGTAACTGAGTATT+TGG | 0.157211 | 5_1:-27080910 | None:intergenic |
| TAGAGAAAGACTCAAAATTT+TGG | 0.181148 | 5_1:+27082497 | Msa0726330:CDS |
| TAATATTACACAACACAATT+TGG | 0.218679 | 5_1:-27084286 | None:intergenic |
| GGAAAGGAAGGAAAGATTTC+TGG | 0.263361 | 5_1:+27084087 | Msa0726330:three_prime_UTR |
| CATTGGTATCTATTTGACTA+TGG | 0.304264 | 5_1:-27079999 | None:intergenic |
| GATGAGATGGAAAAGGTTAA+AGG | 0.325650 | 5_1:+27082447 | Msa0726330:CDS |
| TCATCCTGCTATGTAGATTC+AGG | 0.332131 | 5_1:+27080940 | Msa0726330:CDS |
| TAGTTGATCAATGGGGAAAA+TGG | 0.333557 | 5_1:+27084061 | Msa0726330:three_prime_UTR |
| ACAAATAAATCAACACCTAT+TGG | 0.333960 | 5_1:-27081716 | None:intergenic |
| TGACCCTTGCTCTTCCCATT+TGG | 0.338669 | 5_1:-27079763 | None:intergenic |
| TGGTCAAATTCCTACCATTA+TGG | 0.345688 | 5_1:+27084009 | Msa0726330:CDS |
| TCAACACCTATTGGTTTGTA+AGG | 0.351478 | 5_1:-27081707 | None:intergenic |
| TTGTATATACCTTAAAGAAT+TGG | 0.357864 | 5_1:-27082617 | None:intergenic |
| GCAATGTGATTTATCTTCCT+TGG | 0.359342 | 5_1:-27081743 | None:intergenic |
| AAAAGGCATTCCCTGGTTCC+TGG | 0.378446 | 5_1:+27081432 | Msa0726330:CDS |
| ACTTCTCATTGTAAATATAC+AGG | 0.382804 | 5_1:+27081814 | Msa0726330:CDS |
| GGTTTGTAAGGGCAGACATC+TGG | 0.386041 | 5_1:-27081695 | None:intergenic |
| GAACTCAGATTAAGGTCTTC+CGG | 0.386301 | 5_1:-27082534 | None:intergenic |
| ATGAGAAGTGAAGGTACATT+TGG | 0.397742 | 5_1:-27081800 | None:intergenic |
| AAAAGAAGGAGTCACAAATC+TGG | 0.397864 | 5_1:+27079787 | Msa0726330:CDS |
| CAATGAGTTAGTTGATCAAT+GGG | 0.411742 | 5_1:+27084053 | Msa0726330:three_prime_UTR |
| ACAATGAGTTAGTTGATCAA+TGG | 0.412291 | 5_1:+27084052 | Msa0726330:three_prime_UTR |
| TCTCTGCAGAACTCAGATTA+AGG | 0.418630 | 5_1:-27082542 | None:intergenic |
| TTCCAGAGTTGCCTTTGAAA+AGG | 0.419200 | 5_1:+27079839 | Msa0726330:CDS |
| GATGACTTCAGTAGTGTTCA+TGG | 0.422593 | 5_1:+27080746 | Msa0726330:CDS |
| TTTCTTTATCGTCCGAGAGC+AGG | 0.427390 | 5_1:+27081383 | Msa0726330:CDS |
| ATTTCCCATGGCGTTGCCGC+TGG | 0.431870 | 5_1:-27080884 | None:intergenic |
| TTGAAAAGGGTTAGCAATGC+AGG | 0.437666 | 5_1:+27079853 | Msa0726330:CDS |
| TATATCTTAATATGTGATGA+TGG | 0.443248 | 5_1:+27084225 | Msa0726330:three_prime_UTR |
| TCCAGTTTCTACTCAAGAAA+AGG | 0.443877 | 5_1:+27081415 | Msa0726330:CDS |
| TTTGTCTTCAAGAGCCATAA+TGG | 0.456248 | 5_1:-27084023 | None:intergenic |
| ATGAAAACCAAAATGTTGGC+TGG | 0.456829 | 5_1:+27079691 | None:intergenic |
| AGGTCTATCTCAAAGTAGTT+AGG | 0.458243 | 5_1:-27083369 | None:intergenic |
| AGTTGTGGTTCAAAACCAAA+TGG | 0.458980 | 5_1:+27079748 | Msa0726330:CDS |
| AGCAGGATGAACTTTCATAC+TGG | 0.460053 | 5_1:-27080927 | None:intergenic |
| TCCAGAGTTGCCTTTGAAAA+GGG | 0.461075 | 5_1:+27079840 | Msa0726330:CDS |
| ATTGGTTTGACAGAGATTAG+TGG | 0.462765 | 5_1:+27082422 | Msa0726330:intron |
| CTTCGAGACCGTGTAAAGAA+TGG | 0.470132 | 5_1:+27083438 | Msa0726330:CDS |
| TTTCGCCAGCGGCAACGCCA+TGG | 0.474812 | 5_1:+27080879 | Msa0726330:CDS |
| AAGTTAGCTTCCACCACAAT+GGG | 0.474875 | 5_1:+27079724 | Msa0726330:CDS |
| TATCCTGCTAGCATGTTCAT+TGG | 0.475103 | 5_1:+27081973 | Msa0726330:CDS |
| CTCCATTCTTATCTATCTTG+AGG | 0.475536 | 5_1:-27080993 | None:intergenic |
| AAGAATGGAATACTTGATGT+TGG | 0.478006 | 5_1:+27083453 | Msa0726330:CDS |
| ATGAGATGGAAAAGGTTAAA+GGG | 0.481261 | 5_1:+27082448 | Msa0726330:CDS |
| TTCTTTATCGTCCGAGAGCA+GGG | 0.483123 | 5_1:+27081384 | Msa0726330:CDS |
| TCCTCGATATATAGCTAAAA+CGG | 0.484530 | 5_1:-27083401 | None:intergenic |
| ACTGGAGTAACTGAGTATTT+GGG | 0.484825 | 5_1:-27080909 | None:intergenic |
| TCTCAGTGAATTTGTTCACC+TGG | 0.488032 | 5_1:+27079897 | Msa0726330:CDS |
| GTTGTCAGAGAATTTCGAAA+AGG | 0.488281 | 5_1:+27082038 | Msa0726330:CDS |
| TTTGACTATGGTATTGAACC+TGG | 0.496024 | 5_1:-27079987 | None:intergenic |
| ACTGAAGTCATCATCTGAAT+CGG | 0.496214 | 5_1:-27080735 | None:intergenic |
| TTTGGCTGGAGTAGTTAATC+CGG | 0.496798 | 5_1:+27082515 | Msa0726330:CDS |
| GAAATTACAGACCAGGAACC+AGG | 0.499193 | 5_1:-27081443 | None:intergenic |
| GTCTGCCCTTACAAACCAAT+AGG | 0.500993 | 5_1:+27081701 | Msa0726330:CDS |
| AGAGCAAGGGTCACAAAAGA+AGG | 0.502944 | 5_1:+27079773 | Msa0726330:CDS |
| TTCGCCAGCGGCAACGCCAT+GGG | 0.506780 | 5_1:+27080880 | Msa0726330:CDS |
| ATTGGTGATGCCAATGGAGA+AGG | 0.509060 | 5_1:+27081991 | Msa0726330:CDS |
| AGTCAAACCATGCATCCTCT+TGG | 0.515815 | 5_1:-27080691 | None:intergenic |
| TTGATTTATTTGTGAGTCCA+AGG | 0.519202 | 5_1:+27081726 | Msa0726330:CDS |
| AAGCAGCACAACACTTGCTC+AGG | 0.519810 | 5_1:-27083956 | None:intergenic |
| TTTACAGGCACAAAAGGAAG+AGG | 0.525168 | 5_1:+27083928 | Msa0726330:intron |
| AAGGCTCAAGCCTTCTCCAT+TGG | 0.526944 | 5_1:-27082001 | None:intergenic |
| GTGTTGAGGACGCGAAAGCA+CGG | 0.533305 | 5_1:-27082595 | None:intergenic |
| CATCCTGCTATGTAGATTCA+GGG | 0.534072 | 5_1:+27080941 | Msa0726330:CDS |
| AGATTCAGGGTGCAAATATG+AGG | 0.535593 | 5_1:+27080954 | Msa0726330:CDS |
| AGTGGATGATGAGATGGAAA+AGG | 0.536497 | 5_1:+27082440 | Msa0726330:CDS |
| TGATGTTGGATTAACTATCC+AGG | 0.538342 | 5_1:+27083467 | Msa0726330:CDS |
| GCACCCTGAATCTACATAGC+AGG | 0.539585 | 5_1:-27080944 | None:intergenic |
| GAGATTAGTGGATGATGAGA+TGG | 0.540497 | 5_1:+27082434 | Msa0726330:intron |
| AAAATTGACTTTGTTAACCA+TGG | 0.541173 | 5_1:+27083989 | Msa0726330:CDS |
| TGTTGAGGACGCGAAAGCAC+GGG | 0.543844 | 5_1:-27082594 | None:intergenic |
| AATTATGCAAAGTAACATAC+AGG | 0.545958 | 5_1:-27084257 | None:intergenic |
| ACTCAAGAAAAGGCATTCCC+TGG | 0.549261 | 5_1:+27081425 | Msa0726330:CDS |
| TCACCAATGAACATGCTAGC+AGG | 0.549372 | 5_1:-27081976 | None:intergenic |
| ATGGCGTTGCCGCTGGCGAA+AGG | 0.551383 | 5_1:-27080877 | None:intergenic |
| TTTGGATGTTCACCGACACT+TGG | 0.551399 | 5_1:-27081782 | None:intergenic |
| AACCACCTTTGTCAAAATCC+AGG | 0.552169 | 5_1:-27079915 | None:intergenic |
| TGAAACCTCTGATCTCCTAC+AGG | 0.552393 | 5_1:-27079944 | None:intergenic |
| CTGCGGAGCTTGAACACTGA+AGG | 0.553302 | 5_1:-27081467 | None:intergenic |
| CAACACCTATTGGTTTGTAA+GGG | 0.556147 | 5_1:-27081706 | None:intergenic |
| CAAGTATTCCATTCTTTACA+CGG | 0.563804 | 5_1:-27083446 | None:intergenic |
| GTTGTGGTTCAAAACCAAAT+GGG | 0.565547 | 5_1:+27079749 | Msa0726330:CDS |
| AAAATGTTGGACTTAAGAGA+AGG | 0.568369 | 5_1:-27084200 | None:intergenic |
| GATCAATGGGGAAAATGGAA+AGG | 0.573677 | 5_1:+27084066 | Msa0726330:three_prime_UTR |
| TCTTCAAGAGCCATAATGGT+AGG | 0.575430 | 5_1:-27084019 | None:intergenic |
| TAAGGGCAGACATCTGGAGC+AGG | 0.575624 | 5_1:-27081689 | None:intergenic |
| GAAGTTAGCTTCCACCACAA+TGG | 0.578899 | 5_1:+27079723 | Msa0726330:CDS |
| GGAACTTGAATCCCTGCTCT+CGG | 0.580440 | 5_1:-27081395 | None:intergenic |
| TACCTCAAGATAGATAAGAA+TGG | 0.583166 | 5_1:+27080991 | Msa0726330:CDS |
| GAGTATACCAAGAGGATGCA+TGG | 0.588884 | 5_1:+27080684 | Msa0726330:CDS |
| TTGACTATGGTATTGAACCT+GGG | 0.589577 | 5_1:-27079986 | None:intergenic |
| TTTATGTAGAGATAAGCAAA+AGG | 0.589636 | 5_1:+27081664 | Msa0726330:intron |
| ACCTTAAAGAATTGGTGTTG+AGG | 0.589868 | 5_1:-27082609 | None:intergenic |
| AGTATTTGGGACATTTCCCA+TGG | 0.591513 | 5_1:-27080896 | None:intergenic |
| AAAACCAAATGGGAAGAGCA+AGG | 0.596794 | 5_1:+27079759 | Msa0726330:CDS |
| TCCACCACAATGGGAAGTTG+TGG | 0.597370 | 5_1:+27079733 | Msa0726330:CDS |
| AACATGCTAGCAGGATATGT+AGG | 0.599426 | 5_1:-27081967 | None:intergenic |
| ACCACAACTTCCCATTGTGG+TGG | 0.601317 | 5_1:-27079734 | None:intergenic |
| TTTAGCTATATATCGAGGAA+GGG | 0.604329 | 5_1:+27083405 | Msa0726330:CDS |
| AAACCAAATGGGAAGAGCAA+GGG | 0.607442 | 5_1:+27079760 | Msa0726330:CDS |
| GGAAAATGGAAAGGAAAGGA+AGG | 0.607610 | 5_1:+27084075 | Msa0726330:three_prime_UTR |
| TGAACCACAACTTCCCATTG+TGG | 0.609774 | 5_1:-27079737 | None:intergenic |
| ATGGGGAAAATGGAAAGGAA+AGG | 0.612063 | 5_1:+27084071 | Msa0726330:three_prime_UTR |
| CATATTGAACTTCCAAGTGT+CGG | 0.612685 | 5_1:+27081770 | Msa0726330:CDS |
| TGTCAAGTTTCATCTTACCC+AGG | 0.615127 | 5_1:+27079969 | Msa0726330:CDS |
| AGCTAAAACGGTGTATGTCG+AGG | 0.615162 | 5_1:-27083389 | None:intergenic |
| ACAACTTAAAATATAGTACA+AGG | 0.619074 | 5_1:-27082020 | None:intergenic |
| GGCTGCCTGTAGGAGATCAG+AGG | 0.619461 | 5_1:+27079939 | Msa0726330:CDS |
| AAAGGTTAAAGGGTATGCAA+AGG | 0.623130 | 5_1:+27082458 | Msa0726330:CDS |
| CATAGTCAAATAGATACCAA+TGG | 0.629508 | 5_1:+27080000 | Msa0726330:CDS |
| ATGTTCATTGGTGATGCCAA+TGG | 0.630081 | 5_1:+27081985 | Msa0726330:CDS |
| TGAAGGCGAAATTACAGACC+AGG | 0.634925 | 5_1:-27081450 | None:intergenic |
| AAACTTATACATGCTTACAA+TGG | 0.638264 | 5_1:+27082567 | Msa0726330:CDS |
| ATATTTACAATGAGAAGTGA+AGG | 0.641644 | 5_1:-27081809 | None:intergenic |
| AAGGTGGTTCGGCTGCCTGT+AGG | 0.648103 | 5_1:+27079929 | Msa0726330:CDS |
| TAATGGTAGGAATTTGACCA+TGG | 0.659554 | 5_1:-27084006 | None:intergenic |
| AGCAATGCAGGAAACCGCGT+GGG | 0.670211 | 5_1:+27079865 | Msa0726330:CDS |
| CACAAATCTGGAAAGCGCAG+AGG | 0.672954 | 5_1:+27079799 | Msa0726330:CDS |
| TTGATCTTATCCTGAAAACA+CGG | 0.674237 | 5_1:-27082069 | None:intergenic |
| AAATTACAGACCAGGAACCA+GGG | 0.679337 | 5_1:-27081442 | None:intergenic |
| AGGCAACTCTGGAAGCGCAG+AGG | 0.680202 | 5_1:-27079830 | None:intergenic |
| TAGCAATGCAGGAAACCGCG+TGG | 0.700351 | 5_1:+27079864 | Msa0726330:CDS |
| TTAATCTGAGTTCTGCAGAG+AGG | 0.720842 | 5_1:+27082544 | Msa0726330:CDS |
| AATGAGTTAGTTGATCAATG+GGG | 0.746559 | 5_1:+27084054 | Msa0726330:three_prime_UTR |
| TGAGATTAAAATCTCCCACG+CGG | 0.794497 | 5_1:-27079879 | None:intergenic |
| GACTTCAGTAGTGTTCATGG+AGG | 0.803341 | 5_1:+27080749 | Msa0726330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTTTTTATTTTTT+TGG | - | chr5_1:27084155-27084174 | None:intergenic | 0.0% |
| !! | TTTATTTATATATTCCTTTA+TGG | + | chr5_1:27080838-27080857 | Msa0726330:intron | 10.0% |
| !! | TAATAATTTAAGAAAATAGA+AGG | - | chr5_1:27082231-27082250 | None:intergenic | 10.0% |
| !!! | TATTAATGTATTTTAAATAC+AGG | + | chr5_1:27083344-27083363 | Msa0726330:intron | 10.0% |
| !!! | ATTAATGTATTTTAAATACA+GGG | + | chr5_1:27083345-27083364 | Msa0726330:intron | 10.0% |
| !! | ATTTGTTTAATAAAAAGTAA+TGG | - | chr5_1:27083759-27083778 | None:intergenic | 10.0% |
| !! | ATTAAGATATAAAAAAATGT+TGG | - | chr5_1:27084216-27084235 | None:intergenic | 10.0% |
| !! | ATAAAACTAAAAATAACCAA+AGG | - | chr5_1:27080039-27080058 | None:intergenic | 15.0% |
| !! | AAAATTTGTGATTTCATTAT+TGG | + | chr5_1:27080587-27080606 | Msa0726330:intron | 15.0% |
| !!! | CATATATAAATACCAATTTT+TGG | - | chr5_1:27081637-27081656 | None:intergenic | 15.0% |
| !!! | ATTTTTCAACATTTTCAAAT+AGG | - | chr5_1:27081908-27081927 | None:intergenic | 15.0% |
| !! | TTTAATCAAGTAAATATTGA+TGG | - | chr5_1:27082112-27082131 | None:intergenic | 15.0% |
| !!! | GTTATTTTTGTATTCAATTT+TGG | + | chr5_1:27082847-27082866 | Msa0726330:intron | 15.0% |
| !!! | AAACTCATTTTAAATTATGT+AGG | - | chr5_1:27083175-27083194 | None:intergenic | 15.0% |
| !! | TGTTGTAACTCTTATTAATT+CGG | - | chr5_1:27081330-27081349 | None:intergenic | 20.0% |
| !! | TTGAGTACTTAATTTAATCA+CGG | + | chr5_1:27081927-27081946 | Msa0726330:intron | 20.0% |
| !! | ACAACTTAAAATATAGTACA+AGG | - | chr5_1:27082023-27082042 | None:intergenic | 20.0% |
| !! | AATTGAATCTAACTTTATGT+TGG | - | chr5_1:27082208-27082227 | None:intergenic | 20.0% |
| !!! | ATGATATTGTAACTTTAAGA+AGG | - | chr5_1:27082379-27082398 | None:intergenic | 20.0% |
| !! | TTGTATATACCTTAAAGAAT+TGG | - | chr5_1:27082620-27082639 | None:intergenic | 20.0% |
| !! | ATACAAATTTATGTCTTGAT+CGG | + | chr5_1:27082634-27082653 | Msa0726330:intron | 20.0% |
| !! | TTTAGAAGTAGTTATCATTA+AGG | - | chr5_1:27082751-27082770 | None:intergenic | 20.0% |
| !! | TTATAGATATGATAACACTA+GGG | + | chr5_1:27082870-27082889 | Msa0726330:intron | 20.0% |
| !! | CAACTATTATAAGTTTATAG+TGG | - | chr5_1:27083200-27083219 | None:intergenic | 20.0% |
| !! | TTGATAAAACTTATTAATCC+CGG | - | chr5_1:27083796-27083815 | None:intergenic | 20.0% |
| !! | CCTGTAAAAACATAAATATA+GGG | - | chr5_1:27083916-27083935 | None:intergenic | 20.0% |
| !! | TATATCTTAATATGTGATGA+TGG | + | chr5_1:27084225-27084244 | Msa0726330:three_prime_UTR | 20.0% |
| !! | TAATATTACACAACACAATT+TGG | - | chr5_1:27084289-27084308 | None:intergenic | 20.0% |
| !!! | TATATGATTTTGATTATGAG+AGG | + | chr5_1:27084307-27084326 | Msa0726330:three_prime_UTR | 20.0% |
| ! | AAAATACAAAGTTGAAACGT+GGG | - | chr5_1:27080223-27080242 | None:intergenic | 25.0% |
| ! | TAATGCAAACAATACAATGT+CGG | - | chr5_1:27080504-27080523 | None:intergenic | 25.0% |
| ! | TTTGTGATTTCATTATTGGA+AGG | + | chr5_1:27080591-27080610 | Msa0726330:intron | 25.0% |
| ! | ATTTCATTATTGGAAGGAAT+CGG | + | chr5_1:27080597-27080616 | Msa0726330:intron | 25.0% |
| ! | GTAAGTTATGTTAACTCTAA+GGG | - | chr5_1:27080626-27080645 | None:intergenic | 25.0% |
| ! | AGTAAGTTATGTTAACTCTA+AGG | - | chr5_1:27080627-27080646 | None:intergenic | 25.0% |
| ! | AAGACATGAAATGAAAACAA+AGG | - | chr5_1:27081137-27081156 | None:intergenic | 25.0% |
| ! | GAATGATAGACATAAATTAC+TGG | - | chr5_1:27081190-27081209 | None:intergenic | 25.0% |
| ! | TGTTAAAGCCTAAAAACATT+AGG | + | chr5_1:27081280-27081299 | Msa0726330:intron | 25.0% |
| !! | ATGAACTTCCTAATGTTTTT+AGG | - | chr5_1:27081291-27081310 | None:intergenic | 25.0% |
| ! | GTTCATTTACTTCCAAAAAT+TGG | + | chr5_1:27081622-27081641 | Msa0726330:intron | 25.0% |
| ! | TTTATGTAGAGATAAGCAAA+AGG | + | chr5_1:27081664-27081683 | Msa0726330:intron | 25.0% |
| ! | ACAAATAAATCAACACCTAT+TGG | - | chr5_1:27081719-27081738 | None:intergenic | 25.0% |
| ! | ATATTTACAATGAGAAGTGA+AGG | - | chr5_1:27081812-27081831 | None:intergenic | 25.0% |
| ! | ACTTCTCATTGTAAATATAC+AGG | + | chr5_1:27081814-27081833 | Msa0726330:CDS | 25.0% |
| !! | TATTCAATTCAGTTTTGCTA+TGG | + | chr5_1:27081861-27081880 | Msa0726330:intron | 25.0% |
| !!! | ATTTTGAGTCTTTCTCTAAA+GGG | - | chr5_1:27082495-27082514 | None:intergenic | 25.0% |
| !!! | AATTTTGAGTCTTTCTCTAA+AGG | - | chr5_1:27082496-27082515 | None:intergenic | 25.0% |
| !! | TAGAGAAAGACTCAAAATTT+TGG | + | chr5_1:27082497-27082516 | Msa0726330:CDS | 25.0% |
| ! | AAACTTATACATGCTTACAA+TGG | + | chr5_1:27082567-27082586 | Msa0726330:CDS | 25.0% |
| ! | AAATTAAAGTCGCATAGTTA+TGG | + | chr5_1:27082823-27082842 | Msa0726330:intron | 25.0% |
| ! | GTTATAGATATGATAACACT+AGG | + | chr5_1:27082869-27082888 | Msa0726330:intron | 25.0% |
| ! | TTGAATCTGATTATTCAGAA+AGG | + | chr5_1:27082907-27082926 | Msa0726330:intron | 25.0% |
| ! | TGAATCTGATTATTCAGAAA+GGG | + | chr5_1:27082908-27082927 | Msa0726330:intron | 25.0% |
| ! | TAATAATGTGTGAAATCACA+TGG | - | chr5_1:27083329-27083348 | None:intergenic | 25.0% |
| ! | AACTTTAGACTAAATTCGTT+AGG | + | chr5_1:27083610-27083629 | Msa0726330:intron | 25.0% |
| ! | AATAGCATATGAACTTATAG+CGG | - | chr5_1:27083718-27083737 | None:intergenic | 25.0% |
| !!! | CCCTATATTTATGTTTTTAC+AGG | + | chr5_1:27083913-27083932 | Msa0726330:intron | 25.0% |
| ! | GCCTGTAAAAACATAAATAT+AGG | - | chr5_1:27083917-27083936 | None:intergenic | 25.0% |
| !! | AAAATTGACTTTGTTAACCA+TGG | + | chr5_1:27083989-27084008 | Msa0726330:CDS | 25.0% |
| ! | AATTATGCAAAGTAACATAC+AGG | - | chr5_1:27084260-27084279 | None:intergenic | 25.0% |
| CATTGGTATCTATTTGACTA+TGG | - | chr5_1:27080002-27080021 | None:intergenic | 30.0% | |
| CATAGTCAAATAGATACCAA+TGG | + | chr5_1:27080000-27080019 | Msa0726330:CDS | 30.0% | |
| CCATCATAACAATATCATCA+AGG | - | chr5_1:27080064-27080083 | None:intergenic | 30.0% | |
| ! | CCTTGATGATATTGTTATGA+TGG | + | chr5_1:27080061-27080080 | Msa0726330:intron | 30.0% |
| GATAATGACAATGAACTTGT+TGG | + | chr5_1:27080120-27080139 | Msa0726330:intron | 30.0% | |
| !! | ACAATGAACTTGTTGGATTT+CGG | + | chr5_1:27080127-27080146 | Msa0726330:intron | 30.0% |
| CAAAATACAAAGTTGAAACG+TGG | - | chr5_1:27080224-27080243 | None:intergenic | 30.0% | |
| TAGTCAAAGAAACAATCGTT+TGG | - | chr5_1:27080316-27080335 | None:intergenic | 30.0% | |
| ATTTGCATGAAAATAGCAAG+AGG | + | chr5_1:27080398-27080417 | Msa0726330:intron | 30.0% | |
| AACAATCTGTTCAACCATAA+AGG | - | chr5_1:27080855-27080874 | None:intergenic | 30.0% | |
| TACCTCAAGATAGATAAGAA+TGG | + | chr5_1:27080991-27081010 | Msa0726330:CDS | 30.0% | |
| ACAATAATGAATCGTTGAAC+AGG | + | chr5_1:27081347-27081366 | Msa0726330:intron | 30.0% | |
| TTGATTTATTTGTGAGTCCA+AGG | + | chr5_1:27081726-27081745 | Msa0726330:CDS | 30.0% | |
| TTGATCTTATCCTGAAAACA+CGG | - | chr5_1:27082072-27082091 | None:intergenic | 30.0% | |
| ! | TTCATCGGTTGAAAATTCTA+GGG | + | chr5_1:27082296-27082315 | Msa0726330:intron | 30.0% |
| ATGAGATGGAAAAGGTTAAA+GGG | + | chr5_1:27082448-27082467 | Msa0726330:CDS | 30.0% | |
| GAATCTGATTATTCAGAAAG+GGG | + | chr5_1:27082909-27082928 | Msa0726330:intron | 30.0% | |
| ! | CTTAGAATCTGATTTTTGCA+TGG | + | chr5_1:27083052-27083071 | Msa0726330:intron | 30.0% |
| !! | AACTATTTGATAACTTGCTC+AGG | - | chr5_1:27083278-27083297 | None:intergenic | 30.0% |
| TCCTCGATATATAGCTAAAA+CGG | - | chr5_1:27083404-27083423 | None:intergenic | 30.0% | |
| !! | TTTTAGCTATATATCGAGGA+AGG | + | chr5_1:27083404-27083423 | Msa0726330:CDS | 30.0% |
| TTTAGCTATATATCGAGGAA+GGG | + | chr5_1:27083405-27083424 | Msa0726330:CDS | 30.0% | |
| CAAGTATTCCATTCTTTACA+CGG | - | chr5_1:27083449-27083468 | None:intergenic | 30.0% | |
| AAGAATGGAATACTTGATGT+TGG | + | chr5_1:27083453-27083472 | Msa0726330:CDS | 30.0% | |
| ACTTCAAACTAACGATTTCA+AGG | - | chr5_1:27083504-27083523 | None:intergenic | 30.0% | |
| !! | TTGTTAATTCAGTTCTAGAG+AGG | + | chr5_1:27083567-27083586 | Msa0726330:intron | 30.0% |
| !! | TATGTTTTTACAGGCACAAA+AGG | + | chr5_1:27083922-27083941 | Msa0726330:intron | 30.0% |
| ACAATGAGTTAGTTGATCAA+TGG | + | chr5_1:27084052-27084071 | Msa0726330:three_prime_UTR | 30.0% | |
| CAATGAGTTAGTTGATCAAT+GGG | + | chr5_1:27084053-27084072 | Msa0726330:three_prime_UTR | 30.0% | |
| AATGAGTTAGTTGATCAATG+GGG | + | chr5_1:27084054-27084073 | Msa0726330:three_prime_UTR | 30.0% | |
| AAAATGTTGGACTTAAGAGA+AGG | - | chr5_1:27084203-27084222 | None:intergenic | 30.0% | |
| AGTTGTGGTTCAAAACCAAA+TGG | + | chr5_1:27079748-27079767 | Msa0726330:CDS | 35.0% | |
| GTTGTGGTTCAAAACCAAAT+GGG | + | chr5_1:27079749-27079768 | Msa0726330:CDS | 35.0% | |
| AAAAGAAGGAGTCACAAATC+TGG | + | chr5_1:27079787-27079806 | Msa0726330:CDS | 35.0% | |
| ! | TTGACTATGGTATTGAACCT+GGG | - | chr5_1:27079989-27080008 | None:intergenic | 35.0% |
| ! | TTTGACTATGGTATTGAACC+TGG | - | chr5_1:27079990-27080009 | None:intergenic | 35.0% |
| AGGAGCAAAAAAGTTACCAT+TGG | - | chr5_1:27080019-27080038 | None:intergenic | 35.0% | |
| !!! | TGGTAACTTTTTTGCTCCTT+TGG | + | chr5_1:27080020-27080039 | Msa0726330:intron | 35.0% |
| !! | AACTTGTTGGATTTCGGATT+TGG | + | chr5_1:27080133-27080152 | Msa0726330:intron | 35.0% |
| AATCACACTATCTTCAATCC+TGG | + | chr5_1:27080175-27080194 | Msa0726330:intron | 35.0% | |
| TTGACCTGATTTACCAAAGT+TGG | + | chr5_1:27080241-27080260 | Msa0726330:intron | 35.0% | |
| CTTGTTTATCAAAGAAGCCA+TGG | - | chr5_1:27080361-27080380 | None:intergenic | 35.0% | |
| ATCGATTAGACAATCCAGAT+CGG | - | chr5_1:27080461-27080480 | None:intergenic | 35.0% | |
| AACAATACAATGTCGGAATG+TGG | - | chr5_1:27080497-27080516 | None:intergenic | 35.0% | |
| ATAAACCGTCTGATCAAGAT+CGG | - | chr5_1:27080553-27080572 | None:intergenic | 35.0% | |
| ACTGAAGTCATCATCTGAAT+CGG | - | chr5_1:27080738-27080757 | None:intergenic | 35.0% | |
| ! | CTATTGACTATGTTGAGCAT+TGG | + | chr5_1:27080793-27080812 | Msa0726330:intron | 35.0% |
| ACTGGAGTAACTGAGTATTT+GGG | - | chr5_1:27080912-27080931 | None:intergenic | 35.0% | |
| TACTGGAGTAACTGAGTATT+TGG | - | chr5_1:27080913-27080932 | None:intergenic | 35.0% | |
| CTCCATTCTTATCTATCTTG+AGG | - | chr5_1:27080996-27081015 | None:intergenic | 35.0% | |
| TCCAGTTTCTACTCAAGAAA+AGG | + | chr5_1:27081415-27081434 | Msa0726330:CDS | 35.0% | |
| ACTCCTTCTATGTGAATTGT+CGG | - | chr5_1:27081544-27081563 | None:intergenic | 35.0% | |
| ACGACTGTGTCAATGTTATT+CGG | - | chr5_1:27081599-27081618 | None:intergenic | 35.0% | |
| !! | CAACACCTATTGGTTTGTAA+GGG | - | chr5_1:27081709-27081728 | None:intergenic | 35.0% |
| !! | TCAACACCTATTGGTTTGTA+AGG | - | chr5_1:27081710-27081729 | None:intergenic | 35.0% |
| GCAATGTGATTTATCTTCCT+TGG | - | chr5_1:27081746-27081765 | None:intergenic | 35.0% | |
| CATATTGAACTTCCAAGTGT+CGG | + | chr5_1:27081770-27081789 | Msa0726330:CDS | 35.0% | |
| ! | ATGAGAAGTGAAGGTACATT+TGG | - | chr5_1:27081803-27081822 | None:intergenic | 35.0% |
| GTTGTCAGAGAATTTCGAAA+AGG | + | chr5_1:27082038-27082057 | Msa0726330:CDS | 35.0% | |
| !! | GTGTTTTCAGGATAAGATCA+AGG | + | chr5_1:27082071-27082090 | Msa0726330:CDS | 35.0% |
| GCACTTTCAATATGAAGAGT+CGG | - | chr5_1:27082165-27082184 | None:intergenic | 35.0% | |
| ! | CTTCATCGGTTGAAAATTCT+AGG | + | chr5_1:27082295-27082314 | Msa0726330:intron | 35.0% |
| TCTAATGAGCATGTCGTATA+AGG | - | chr5_1:27082343-27082362 | None:intergenic | 35.0% | |
| !! | ATTGGTTTGACAGAGATTAG+TGG | + | chr5_1:27082422-27082441 | Msa0726330:intron | 35.0% |
| GATGAGATGGAAAAGGTTAA+AGG | + | chr5_1:27082447-27082466 | Msa0726330:CDS | 35.0% | |
| ! | AAAGGTTAAAGGGTATGCAA+AGG | + | chr5_1:27082458-27082477 | Msa0726330:CDS | 35.0% |
| !! | GAAAGACTCAAAATTTTGGC+TGG | + | chr5_1:27082501-27082520 | Msa0726330:CDS | 35.0% |
| TCCTCAACACCAATTCTTTA+AGG | + | chr5_1:27082608-27082627 | Msa0726330:CDS | 35.0% | |
| !! | ACCTTAAAGAATTGGTGTTG+AGG | - | chr5_1:27082612-27082631 | None:intergenic | 35.0% |
| !!! | GTGATTCGTTGATTTTACAC+TGG | + | chr5_1:27082790-27082809 | Msa0726330:intron | 35.0% |
| !!! | GCACTATTCTGTGGTTTTAA+TGG | + | chr5_1:27082935-27082954 | Msa0726330:intron | 35.0% |
| ! | AGTTGATTCAAACCAGCTTA+TGG | - | chr5_1:27083094-27083113 | None:intergenic | 35.0% |
| AGGTCTATCTCAAAGTAGTT+AGG | - | chr5_1:27083372-27083391 | None:intergenic | 35.0% | |
| !!! | ACCGTTTTAGCTATATATCG+AGG | + | chr5_1:27083400-27083419 | Msa0726330:CDS | 35.0% |
| TGATGTTGGATTAACTATCC+AGG | + | chr5_1:27083467-27083486 | Msa0726330:CDS | 35.0% | |
| TTCAAGGATCAAACTATACC+TGG | - | chr5_1:27083488-27083507 | None:intergenic | 35.0% | |
| CAAATTAAACCTTGCATGTC+CGG | + | chr5_1:27083774-27083793 | Msa0726330:intron | 35.0% | |
| AAATTAAACCTTGCATGTCC+GGG | + | chr5_1:27083775-27083794 | Msa0726330:intron | 35.0% | |
| TATTAGCCAATGTGAGACTA+GGG | + | chr5_1:27083825-27083844 | Msa0726330:intron | 35.0% | |
| TAATGGTAGGAATTTGACCA+TGG | - | chr5_1:27084009-27084028 | None:intergenic | 35.0% | |
| TGGTCAAATTCCTACCATTA+TGG | + | chr5_1:27084009-27084028 | Msa0726330:CDS | 35.0% | |
| TTTGTCTTCAAGAGCCATAA+TGG | - | chr5_1:27084026-27084045 | None:intergenic | 35.0% | |
| TAGTTGATCAATGGGGAAAA+TGG | + | chr5_1:27084061-27084080 | Msa0726330:three_prime_UTR | 35.0% | |
| !! | TATGAGAGGCTTTTTAGTAG+TGG | + | chr5_1:27084321-27084340 | Msa0726330:three_prime_UTR | 35.0% |
| ! | AAGTTAGCTTCCACCACAAT+GGG | + | chr5_1:27079724-27079743 | Msa0726330:CDS | 40.0% |
| AAAACCAAATGGGAAGAGCA+AGG | + | chr5_1:27079759-27079778 | Msa0726330:CDS | 40.0% | |
| AAACCAAATGGGAAGAGCAA+GGG | + | chr5_1:27079760-27079779 | Msa0726330:CDS | 40.0% | |
| ! | TTCCAGAGTTGCCTTTGAAA+AGG | + | chr5_1:27079839-27079858 | Msa0726330:CDS | 40.0% |
| ! | TCCAGAGTTGCCTTTGAAAA+GGG | + | chr5_1:27079840-27079859 | Msa0726330:CDS | 40.0% |
| ! | GCATTGCTAACCCTTTTCAA+AGG | - | chr5_1:27079853-27079872 | None:intergenic | 40.0% |
| ! | TTGAAAAGGGTTAGCAATGC+AGG | + | chr5_1:27079853-27079872 | Msa0726330:CDS | 40.0% |
| TGAGATTAAAATCTCCCACG+CGG | - | chr5_1:27079882-27079901 | None:intergenic | 40.0% | |
| ! | TCTCAGTGAATTTGTTCACC+TGG | + | chr5_1:27079897-27079916 | Msa0726330:CDS | 40.0% |
| !! | GTTCACCTGGATTTTGACAA+AGG | + | chr5_1:27079910-27079929 | Msa0726330:CDS | 40.0% |
| AACCACCTTTGTCAAAATCC+AGG | - | chr5_1:27079918-27079937 | None:intergenic | 40.0% | |
| !! | GGATTTTGACAAAGGTGGTT+CGG | + | chr5_1:27079918-27079937 | Msa0726330:CDS | 40.0% |
| TGTCAAGTTTCATCTTACCC+AGG | + | chr5_1:27079969-27079988 | Msa0726330:CDS | 40.0% | |
| CGTTCCAACTTTGGTAAATC+AGG | - | chr5_1:27080248-27080267 | None:intergenic | 40.0% | |
| GATTTACCAAAGTTGGAACG+TGG | + | chr5_1:27080248-27080267 | Msa0726330:intron | 40.0% | |
| GATAATCCACGTTCCAACTT+TGG | - | chr5_1:27080257-27080276 | None:intergenic | 40.0% | |
| TGAATTTGATCTGATGCACC+AGG | + | chr5_1:27080277-27080296 | Msa0726330:intron | 40.0% | |
| GAAAATAGCAAGAGGATGCA+TGG | + | chr5_1:27080406-27080425 | Msa0726330:intron | 40.0% | |
| TCGATTAGACAATCCAGATC+GGG | - | chr5_1:27080460-27080479 | None:intergenic | 40.0% | |
| AATGTCGGAATGTGGACATT+TGG | - | chr5_1:27080489-27080508 | None:intergenic | 40.0% | |
| AAGATCGGACAGTTGACATT+CGG | - | chr5_1:27080538-27080557 | None:intergenic | 40.0% | |
| ! | AGCACTTGTGTACATTTTGC+AGG | + | chr5_1:27080662-27080681 | Msa0726330:intron | 40.0% |
| !! | TTTTGCAGGAGTATACCAAG+AGG | + | chr5_1:27080676-27080695 | Msa0726330:intron | 40.0% |
| GATGACTTCAGTAGTGTTCA+TGG | + | chr5_1:27080746-27080765 | Msa0726330:CDS | 40.0% | |
| ! | AGTATTTGGGACATTTCCCA+TGG | - | chr5_1:27080899-27080918 | None:intergenic | 40.0% |
| AGCAGGATGAACTTTCATAC+TGG | - | chr5_1:27080930-27080949 | None:intergenic | 40.0% | |
| TCATCCTGCTATGTAGATTC+AGG | + | chr5_1:27080940-27080959 | Msa0726330:CDS | 40.0% | |
| CATCCTGCTATGTAGATTCA+GGG | + | chr5_1:27080941-27080960 | Msa0726330:CDS | 40.0% | |
| AGATTCAGGGTGCAAATATG+AGG | + | chr5_1:27080954-27080973 | Msa0726330:CDS | 40.0% | |
| ! | GCCTTTTCTTGAGTAGAAAC+TGG | - | chr5_1:27081419-27081438 | None:intergenic | 40.0% |
| AAATTACAGACCAGGAACCA+GGG | - | chr5_1:27081445-27081464 | None:intergenic | 40.0% | |
| TAGAAGGAGTTTCTGTTGTC+TGG | + | chr5_1:27081554-27081573 | Msa0726330:intron | 40.0% | |
| AACATGCTAGCAGGATATGT+AGG | - | chr5_1:27081970-27081989 | None:intergenic | 40.0% | |
| TATCCTGCTAGCATGTTCAT+TGG | + | chr5_1:27081973-27081992 | Msa0726330:CDS | 40.0% | |
| !! | ATGTTCATTGGTGATGCCAA+TGG | + | chr5_1:27081985-27082004 | Msa0726330:CDS | 40.0% |
| ! | ATTTTCAACCGATGAAGCAC+TGG | - | chr5_1:27082292-27082311 | None:intergenic | 40.0% |
| ! | GAGATTAGTGGATGATGAGA+TGG | + | chr5_1:27082434-27082453 | Msa0726330:intron | 40.0% |
| AGTGGATGATGAGATGGAAA+AGG | + | chr5_1:27082440-27082459 | Msa0726330:CDS | 40.0% | |
| TTTGGCTGGAGTAGTTAATC+CGG | + | chr5_1:27082515-27082534 | Msa0726330:CDS | 40.0% | |
| GAACTCAGATTAAGGTCTTC+CGG | - | chr5_1:27082537-27082556 | None:intergenic | 40.0% | |
| TCTCTGCAGAACTCAGATTA+AGG | - | chr5_1:27082545-27082564 | None:intergenic | 40.0% | |
| TTAATCTGAGTTCTGCAGAG+AGG | + | chr5_1:27082544-27082563 | Msa0726330:CDS | 40.0% | |
| TGATAACACTAGGGTTCTGT+TGG | + | chr5_1:27082879-27082898 | Msa0726330:intron | 40.0% | |
| AAACTCGCTTTACCATAAGC+TGG | + | chr5_1:27083079-27083098 | Msa0726330:intron | 40.0% | |
| TTATTAATCCCGGACATGCA+AGG | - | chr5_1:27083786-27083805 | None:intergenic | 40.0% | |
| CTATTAGCCAATGTGAGACT+AGG | + | chr5_1:27083824-27083843 | Msa0726330:intron | 40.0% | |
| GAAAAACCCTAGTCTCACAT+TGG | - | chr5_1:27083834-27083853 | None:intergenic | 40.0% | |
| TTTACAGGCACAAAAGGAAG+AGG | + | chr5_1:27083928-27083947 | Msa0726330:intron | 40.0% | |
| TCTTCAAGAGCCATAATGGT+AGG | - | chr5_1:27084022-27084041 | None:intergenic | 40.0% | |
| GATCAATGGGGAAAATGGAA+AGG | + | chr5_1:27084066-27084085 | Msa0726330:three_prime_UTR | 40.0% | |
| ATGGGGAAAATGGAAAGGAA+AGG | + | chr5_1:27084071-27084090 | Msa0726330:three_prime_UTR | 40.0% | |
| GGAAAATGGAAAGGAAAGGA+AGG | + | chr5_1:27084075-27084094 | Msa0726330:three_prime_UTR | 40.0% | |
| GGAAAGGAAGGAAAGATTTC+TGG | + | chr5_1:27084087-27084106 | Msa0726330:three_prime_UTR | 40.0% | |
| ! | GAAGTTAGCTTCCACCACAA+TGG | + | chr5_1:27079723-27079742 | Msa0726330:CDS | 45.0% |
| TGAACCACAACTTCCCATTG+TGG | - | chr5_1:27079740-27079759 | None:intergenic | 45.0% | |
| AGAGCAAGGGTCACAAAAGA+AGG | + | chr5_1:27079773-27079792 | Msa0726330:CDS | 45.0% | |
| ! | ACCCTTTTCAAAGGCAACTC+TGG | - | chr5_1:27079844-27079863 | None:intergenic | 45.0% |
| !! | CACCTGGATTTTGACAAAGG+TGG | + | chr5_1:27079913-27079932 | Msa0726330:CDS | 45.0% |
| TGAAACCTCTGATCTCCTAC+AGG | - | chr5_1:27079947-27079966 | None:intergenic | 45.0% | |
| !! | AATCGTTTGGTGCAGTCACA+TGG | - | chr5_1:27080303-27080322 | None:intergenic | 45.0% |
| AAGAAGCCATGGCAACTCTA+CGG | - | chr5_1:27080350-27080369 | None:intergenic | 45.0% | |
| CAAGAGGATGCATGGTTTGA+CGG | + | chr5_1:27080414-27080433 | Msa0726330:intron | 45.0% | |
| GACAGTTGACATTCGGACTT+TGG | - | chr5_1:27080531-27080550 | None:intergenic | 45.0% | |
| ACTGTCCGATCTTGATCAGA+CGG | + | chr5_1:27080545-27080564 | Msa0726330:intron | 45.0% | |
| GAGTATACCAAGAGGATGCA+TGG | + | chr5_1:27080684-27080703 | Msa0726330:CDS | 45.0% | |
| AGTCAAACCATGCATCCTCT+TGG | - | chr5_1:27080694-27080713 | None:intergenic | 45.0% | |
| GACTTCAGTAGTGTTCATGG+AGG | + | chr5_1:27080749-27080768 | Msa0726330:CDS | 45.0% | |
| ! | GATTGTTTTCCTTTCGCCAG+CGG | + | chr5_1:27080868-27080887 | Msa0726330:intron | 45.0% |
| TTTCTTTATCGTCCGAGAGC+AGG | + | chr5_1:27081383-27081402 | Msa0726330:CDS | 45.0% | |
| TTCTTTATCGTCCGAGAGCA+GGG | + | chr5_1:27081384-27081403 | Msa0726330:CDS | 45.0% | |
| !! | ACTCAAGAAAAGGCATTCCC+TGG | + | chr5_1:27081425-27081444 | Msa0726330:CDS | 45.0% |
| GAAATTACAGACCAGGAACC+AGG | - | chr5_1:27081446-27081465 | None:intergenic | 45.0% | |
| TGAAGGCGAAATTACAGACC+AGG | - | chr5_1:27081453-27081472 | None:intergenic | 45.0% | |
| ACCTGAAAAACGTTTCGCTG+CGG | - | chr5_1:27081487-27081506 | None:intergenic | 45.0% | |
| ! | GCACCGACAATTCACATAGA+AGG | + | chr5_1:27081538-27081557 | Msa0726330:intron | 45.0% |
| TTCTGTTGTCTGGCACATGT+CGG | + | chr5_1:27081564-27081583 | Msa0726330:intron | 45.0% | |
| GTCTGCCCTTACAAACCAAT+AGG | + | chr5_1:27081701-27081720 | Msa0726330:CDS | 45.0% | |
| TTTGGATGTTCACCGACACT+TGG | - | chr5_1:27081785-27081804 | None:intergenic | 45.0% | |
| TCACCAATGAACATGCTAGC+AGG | - | chr5_1:27081979-27081998 | None:intergenic | 45.0% | |
| !! | ATTGGTGATGCCAATGGAGA+AGG | + | chr5_1:27081991-27082010 | Msa0726330:CDS | 45.0% |
| !! | TGAAGCACTGGTGCAAACAT+TGG | - | chr5_1:27082280-27082299 | None:intergenic | 45.0% |
| TGTTTGCACCAGTGCTTCAT+CGG | + | chr5_1:27082281-27082300 | Msa0726330:intron | 45.0% | |
| AAGGGGTTTGCACTATTCTG+TGG | + | chr5_1:27082926-27082945 | Msa0726330:intron | 45.0% | |
| AGCTAAAACGGTGTATGTCG+AGG | - | chr5_1:27083392-27083411 | None:intergenic | 45.0% | |
| CTTCGAGACCGTGTAAAGAA+TGG | + | chr5_1:27083438-27083457 | Msa0726330:CDS | 45.0% | |
| !!! | ATTTTAAGAAAAAATTATAT+TGG | + | chr5_1:27082404-27082423 | Msa0726330:intron | 5.0% |
| TCCACCACAATGGGAAGTTG+TGG | + | chr5_1:27079733-27079752 | Msa0726330:CDS | 50.0% | |
| ACCACAACTTCCCATTGTGG+TGG | - | chr5_1:27079737-27079756 | None:intergenic | 50.0% | |
| TGACCCTTGCTCTTCCCATT+TGG | - | chr5_1:27079766-27079785 | None:intergenic | 50.0% | |
| ! | CACAAATCTGGAAAGCGCAG+AGG | + | chr5_1:27079799-27079818 | Msa0726330:CDS | 50.0% |
| CTGATCTTGATCTGACGACC+AGG | - | chr5_1:27080196-27080215 | None:intergenic | 50.0% | |
| GCACCCTGAATCTACATAGC+AGG | - | chr5_1:27080947-27080966 | None:intergenic | 50.0% | |
| GGAACTTGAATCCCTGCTCT+CGG | - | chr5_1:27081398-27081417 | None:intergenic | 50.0% | |
| !! | AAAAGGCATTCCCTGGTTCC+TGG | + | chr5_1:27081432-27081451 | Msa0726330:CDS | 50.0% |
| ! | TCCGCAGCGAAACGTTTTTC+AGG | + | chr5_1:27081483-27081502 | Msa0726330:CDS | 50.0% |
| GGTTTGTAAGGGCAGACATC+TGG | - | chr5_1:27081698-27081717 | None:intergenic | 50.0% | |
| AAGGCTCAAGCCTTCTCCAT+TGG | - | chr5_1:27082004-27082023 | None:intergenic | 50.0% | |
| AAGCAGCACAACACTTGCTC+AGG | - | chr5_1:27083959-27083978 | None:intergenic | 50.0% | |
| TAGCAATGCAGGAAACCGCG+TGG | + | chr5_1:27079864-27079883 | Msa0726330:CDS | 55.0% | |
| AGCAATGCAGGAAACCGCGT+GGG | + | chr5_1:27079865-27079884 | Msa0726330:CDS | 55.0% | |
| ! | TTTGGTGCAGTCACATGGCC+TGG | - | chr5_1:27080298-27080317 | None:intergenic | 55.0% |
| AATCCGCCGTAGAGTTGCCA+TGG | + | chr5_1:27080341-27080360 | Msa0726330:intron | 55.0% | |
| AAGCCATGGCAACTCTACGG+CGG | - | chr5_1:27080347-27080366 | None:intergenic | 55.0% | |
| CAATCACGCAGTTCCCGATC+TGG | + | chr5_1:27080444-27080463 | Msa0726330:intron | 55.0% | |
| CTGCGGAGCTTGAACACTGA+AGG | - | chr5_1:27081470-27081489 | None:intergenic | 55.0% | |
| ! | TAAGGGCAGACATCTGGAGC+AGG | - | chr5_1:27081692-27081711 | None:intergenic | 55.0% |
| ! | GGAGATCTCGCCGTGTTTTC+AGG | + | chr5_1:27082059-27082078 | Msa0726330:CDS | 55.0% |
| ! | TGTTGAGGACGCGAAAGCAC+GGG | - | chr5_1:27082597-27082616 | None:intergenic | 55.0% |
| GTGTTGAGGACGCGAAAGCA+CGG | - | chr5_1:27082598-27082617 | None:intergenic | 55.0% | |
| ! | AGGCAACTCTGGAAGCGCAG+AGG | - | chr5_1:27079833-27079852 | None:intergenic | 60.0% |
| ! | AAGGTGGTTCGGCTGCCTGT+AGG | + | chr5_1:27079929-27079948 | Msa0726330:CDS | 60.0% |
| GGCTGCCTGTAGGAGATCAG+AGG | + | chr5_1:27079939-27079958 | Msa0726330:CDS | 60.0% | |
| ATTTCCCATGGCGTTGCCGC+TGG | - | chr5_1:27080887-27080906 | None:intergenic | 60.0% | |
| ATGGCGTTGCCGCTGGCGAA+AGG | - | chr5_1:27080880-27080899 | None:intergenic | 65.0% | |
| TTTCGCCAGCGGCAACGCCA+TGG | + | chr5_1:27080879-27080898 | Msa0726330:CDS | 65.0% | |
| TTCGCCAGCGGCAACGCCAT+GGG | + | chr5_1:27080880-27080899 | Msa0726330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 27079703 | 27084344 | 27079703 | ID=Msa0726330;Name=Msa0726330 |
| chr5_1 | mRNA | 27079703 | 27084344 | 27079703 | ID=Msa0726330-mRNA-1;Parent=Msa0726330;Name=Msa0726330-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.62|0.33|1|1|1|9|296|501 |
| chr5_1 | exon | 27079703 | 27080021 | 27079703 | ID=Msa0726330-mRNA-1:exon:9553;Parent=Msa0726330-mRNA-1 |
| chr5_1 | exon | 27080684 | 27080770 | 27080684 | ID=Msa0726330-mRNA-1:exon:9554;Parent=Msa0726330-mRNA-1 |
| chr5_1 | exon | 27080869 | 27081108 | 27080869 | ID=Msa0726330-mRNA-1:exon:9555;Parent=Msa0726330-mRNA-1 |
| chr5_1 | exon | 27081369 | 27081504 | 27081369 | ID=Msa0726330-mRNA-1:exon:9556;Parent=Msa0726330-mRNA-1 |
| chr5_1 | exon | 27081673 | 27081835 | 27081673 | ID=Msa0726330-mRNA-1:exon:9557;Parent=Msa0726330-mRNA-1 |
| chr5_1 | exon | 27081964 | 27082092 | 27081964 | ID=Msa0726330-mRNA-1:exon:9558;Parent=Msa0726330-mRNA-1 |
| chr5_1 | exon | 27082435 | 27082629 | 27082435 | ID=Msa0726330-mRNA-1:exon:9559;Parent=Msa0726330-mRNA-1 |
| chr5_1 | exon | 27083366 | 27083488 | 27083366 | ID=Msa0726330-mRNA-1:exon:9560;Parent=Msa0726330-mRNA-1 |
| chr5_1 | exon | 27083935 | 27084344 | 27083935 | ID=Msa0726330-mRNA-1:exon:9561;Parent=Msa0726330-mRNA-1 |
| chr5_1 | CDS | 27079703 | 27080021 | 27079703 | ID=Msa0726330-mRNA-1:cds;Parent=Msa0726330-mRNA-1 |
| chr5_1 | CDS | 27080684 | 27080770 | 27080684 | ID=Msa0726330-mRNA-1:cds;Parent=Msa0726330-mRNA-1 |
| chr5_1 | CDS | 27080869 | 27081108 | 27080869 | ID=Msa0726330-mRNA-1:cds;Parent=Msa0726330-mRNA-1 |
| chr5_1 | CDS | 27081369 | 27081504 | 27081369 | ID=Msa0726330-mRNA-1:cds;Parent=Msa0726330-mRNA-1 |
| chr5_1 | CDS | 27081673 | 27081835 | 27081673 | ID=Msa0726330-mRNA-1:cds;Parent=Msa0726330-mRNA-1 |
| chr5_1 | CDS | 27081964 | 27082092 | 27081964 | ID=Msa0726330-mRNA-1:cds;Parent=Msa0726330-mRNA-1 |
| chr5_1 | CDS | 27082435 | 27082629 | 27082435 | ID=Msa0726330-mRNA-1:cds;Parent=Msa0726330-mRNA-1 |
| chr5_1 | CDS | 27083366 | 27083488 | 27083366 | ID=Msa0726330-mRNA-1:cds;Parent=Msa0726330-mRNA-1 |
| chr5_1 | CDS | 27083935 | 27084048 | 27083935 | ID=Msa0726330-mRNA-1:cds;Parent=Msa0726330-mRNA-1 |
| chr5_1 | three_prime_UTR | 27084049 | 27084344 | 27084049 | ID=Msa0726330-mRNA-1:three_prime_utr;Parent=Msa0726330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
