Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300620 | XP_013465254.1 | 85.403 | 596 | 65 | 3 | 1 | 595 | 2 | 576 | 0.0 | 944 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300620 | A0A072VB92 | 85.403 | 596 | 65 | 3 | 1 | 595 | 2 | 576 | 0.0 | 944 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022640 | Msa0300620 | 0.805787 | 1.127981e-49 | -8.615850e-47 |
| Msa0036430 | Msa0300620 | 0.816902 | 4.353348e-52 | -8.615850e-47 |
| Msa0084500 | Msa0300620 | 0.816368 | 5.733430e-52 | -8.615850e-47 |
| Msa0098440 | Msa0300620 | 0.803914 | 2.776409e-49 | -8.615850e-47 |
| Msa0106790 | Msa0300620 | 0.832009 | 1.207308e-55 | -8.615850e-47 |
| Msa0130570 | Msa0300620 | 0.841941 | 3.500168e-58 | -8.615850e-47 |
| Msa0161680 | Msa0300620 | 0.812669 | 3.773846e-51 | -8.615850e-47 |
| Msa0176470 | Msa0300620 | 0.812745 | 3.632605e-51 | -8.615850e-47 |
| Msa0203030 | Msa0300620 | 0.825721 | 4.016214e-54 | -8.615850e-47 |
| Msa0219190 | Msa0300620 | 0.818771 | 1.647031e-52 | -8.615850e-47 |
| Msa0219310 | Msa0300620 | 0.812054 | 5.141599e-51 | -8.615850e-47 |
| Msa0298240 | Msa0300620 | 0.808814 | 2.573810e-50 | -8.615850e-47 |
| Msa0300620 | Msa0322830 | 0.818623 | 1.779370e-52 | -8.615850e-47 |
| Msa0300620 | Msa0337850 | 0.840088 | 1.073131e-57 | -8.615850e-47 |
| Msa0300620 | Msa0413930 | 0.805584 | 1.243795e-49 | -8.615850e-47 |
| Msa0300620 | Msa0436500 | 0.802782 | 4.765388e-49 | -8.615850e-47 |
| Msa0300620 | Msa0444010 | 0.801488 | 8.794970e-49 | -8.615850e-47 |
| Msa0300620 | Msa0707220 | 0.820160 | 7.945036e-53 | -8.615850e-47 |
| Msa0300620 | Msa0885060 | 0.816752 | 4.704000e-52 | -8.615850e-47 |
| Msa0300620 | Msa1007870 | 0.804472 | 2.125585e-49 | -8.615850e-47 |
| Msa0300620 | Msa1033560 | 0.814236 | 1.707144e-51 | -8.615850e-47 |
| Msa0300620 | Msa1073340 | 0.807796 | 4.243320e-50 | -8.615850e-47 |
| Msa0300620 | Msa1113850 | 0.804647 | 1.953476e-49 | -8.615850e-47 |
| Msa0300620 | Msa1248040 | 0.812883 | 3.388445e-51 | -8.615850e-47 |
| Msa0300620 | Msa1420060 | 0.818991 | 1.467865e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300620 | MtrunA17_Chr2g0325741 | 81.115 | 323 | 46 | 2 | 1 | 322 | 2 | 310 | 1.05e-174 | 498 |
| Msa0300620 | MtrunA17_Chr2g0325691 | 53.613 | 595 | 202 | 11 | 4 | 566 | 5 | 557 | 1.42e-150 | 451 |
| Msa0300620 | MtrunA17_Chr2g0325691 | 56.338 | 355 | 133 | 4 | 242 | 579 | 375 | 724 | 4.78e-91 | 296 |
| Msa0300620 | MtrunA17_Chr2g0325691 | 35.273 | 275 | 129 | 8 | 159 | 387 | 443 | 714 | 9.20e-19 | 90.5 |
| Msa0300620 | MtrunA17_Chr2g0325231 | 51.608 | 622 | 205 | 11 | 4 | 572 | 6 | 584 | 1.86e-145 | 443 |
| Msa0300620 | MtrunA17_Chr2g0325231 | 58.201 | 378 | 124 | 6 | 231 | 590 | 363 | 724 | 3.56e-101 | 327 |
| Msa0300620 | MtrunA17_Chr2g0325231 | 29.710 | 276 | 110 | 6 | 198 | 389 | 444 | 719 | 1.48e-13 | 73.9 |
| Msa0300620 | MtrunA17_Chr2g0325661 | 46.311 | 637 | 277 | 11 | 1 | 590 | 1 | 619 | 1.16e-131 | 407 |
| Msa0300620 | MtrunA17_Chr2g0325221 | 44.677 | 620 | 295 | 12 | 1 | 586 | 1 | 606 | 3.09e-126 | 387 |
| Msa0300620 | MtrunA17_Chr2g0325861 | 42.980 | 698 | 245 | 15 | 1 | 578 | 2 | 666 | 5.54e-120 | 376 |
| Msa0300620 | MtrunA17_Chr2g0325781 | 59.599 | 349 | 93 | 7 | 1 | 349 | 1 | 301 | 1.36e-118 | 354 |
| Msa0300620 | MtrunA17_Chr2g0325781 | 36.323 | 223 | 90 | 7 | 279 | 465 | 99 | 305 | 7.67e-16 | 79.0 |
| Msa0300620 | MtrunA17_Chr2g0325701 | 51.701 | 441 | 174 | 6 | 4 | 439 | 5 | 411 | 5.96e-114 | 352 |
| Msa0300620 | MtrunA17_Chr2g0325701 | 50.336 | 298 | 119 | 5 | 307 | 590 | 154 | 436 | 1.13e-61 | 215 |
| Msa0300620 | MtrunA17_Chr2g0325761 | 46.906 | 614 | 256 | 14 | 1 | 567 | 1 | 591 | 1.01e-113 | 355 |
| Msa0300620 | MtrunA17_Chr2g0325761 | 34.717 | 265 | 115 | 7 | 158 | 374 | 354 | 608 | 2.03e-17 | 86.3 |
| Msa0300620 | MtrunA17_Chr2g0325711 | 44.523 | 566 | 279 | 12 | 50 | 593 | 26 | 578 | 5.39e-111 | 351 |
| Msa0300620 | MtrunA17_Chr2g0325281 | 41.721 | 616 | 256 | 9 | 42 | 579 | 3 | 593 | 1.52e-110 | 344 |
| Msa0300620 | MtrunA17_Chr2g0325811 | 43.952 | 587 | 295 | 11 | 1 | 569 | 1 | 571 | 1.02e-105 | 338 |
| Msa0300620 | MtrunA17_Chr7g0235901 | 55.848 | 342 | 92 | 5 | 100 | 413 | 1 | 311 | 1.40e-102 | 313 |
| Msa0300620 | MtrunA17_Chr7g0235901 | 40.684 | 263 | 137 | 5 | 307 | 553 | 52 | 311 | 3.39e-28 | 115 |
| Msa0300620 | MtrunA17_Chr7g0235901 | 42.308 | 182 | 91 | 3 | 399 | 566 | 101 | 282 | 1.77e-19 | 89.7 |
| Msa0300620 | MtrunA17_Chr2g0325321 | 41.528 | 602 | 226 | 9 | 45 | 547 | 8 | 582 | 9.69e-100 | 320 |
| Msa0300620 | MtrunA17_Chr2g0325321 | 46.931 | 277 | 101 | 4 | 242 | 518 | 365 | 595 | 8.64e-45 | 170 |
| Msa0300620 | MtrunA17_Chr2g0325721 | 42.440 | 582 | 245 | 14 | 1 | 573 | 1 | 501 | 5.46e-96 | 303 |
| Msa0300620 | MtrunA17_Chr2g0325351 | 45.885 | 486 | 159 | 10 | 1 | 454 | 2 | 415 | 1.87e-93 | 302 |
| Msa0300620 | MtrunA17_Chr2g0325351 | 45.000 | 320 | 148 | 7 | 248 | 552 | 95 | 401 | 3.14e-44 | 167 |
| Msa0300620 | MtrunA17_Chr2g0325351 | 38.636 | 176 | 87 | 4 | 411 | 583 | 208 | 365 | 4.22e-17 | 85.1 |
| Msa0300620 | MtrunA17_Chr5g0416271 | 53.846 | 351 | 127 | 6 | 70 | 420 | 17 | 332 | 1.45e-88 | 283 |
| Msa0300620 | MtrunA17_Chr5g0416271 | 39.062 | 256 | 151 | 2 | 318 | 573 | 81 | 331 | 3.78e-27 | 115 |
| Msa0300620 | MtrunA17_Chr2g0325361 | 41.493 | 576 | 251 | 13 | 41 | 557 | 2 | 550 | 1.18e-86 | 291 |
| Msa0300620 | MtrunA17_Chr2g0325361 | 55.988 | 334 | 122 | 3 | 242 | 554 | 477 | 806 | 1.33e-75 | 261 |
| Msa0300620 | MtrunA17_Chr2g0325361 | 50.602 | 332 | 141 | 4 | 232 | 559 | 394 | 706 | 7.03e-68 | 239 |
| Msa0300620 | MtrunA17_Chr2g0325361 | 43.131 | 313 | 90 | 5 | 232 | 456 | 494 | 806 | 3.97e-42 | 163 |
| Msa0300620 | MtrunA17_Chr2g0325751 | 84.810 | 158 | 17 | 1 | 438 | 595 | 2 | 152 | 2.52e-78 | 244 |
| Msa0300620 | MtrunA17_Chr2g0325751 | 44.538 | 119 | 59 | 1 | 341 | 459 | 3 | 114 | 1.69e-16 | 77.0 |
| Msa0300620 | MtrunA17_Chr2g0325751 | 46.218 | 119 | 57 | 1 | 355 | 473 | 3 | 114 | 2.04e-16 | 77.0 |
| Msa0300620 | MtrunA17_Chr2g0325751 | 40.972 | 144 | 64 | 1 | 317 | 460 | 7 | 129 | 9.35e-16 | 75.1 |
| Msa0300620 | MtrunA17_Chr2g0325751 | 41.860 | 129 | 64 | 1 | 257 | 385 | 7 | 124 | 2.55e-15 | 73.9 |
| Msa0300620 | MtrunA17_Chr2g0325751 | 40.625 | 128 | 69 | 1 | 269 | 396 | 1 | 121 | 4.91e-15 | 73.2 |
| Msa0300620 | MtrunA17_Chr2g0325751 | 42.609 | 115 | 59 | 1 | 303 | 417 | 7 | 114 | 5.90e-13 | 67.0 |
| Msa0300620 | MtrunA17_Chr2g0325751 | 41.525 | 118 | 62 | 1 | 289 | 406 | 7 | 117 | 1.09e-12 | 66.2 |
| Msa0300620 | MtrunA17_Chr6g0471251 | 43.058 | 497 | 216 | 11 | 1 | 441 | 2 | 487 | 7.25e-78 | 262 |
| Msa0300620 | MtrunA17_Chr6g0471251 | 38.182 | 385 | 202 | 6 | 210 | 578 | 134 | 498 | 1.68e-40 | 157 |
| Msa0300620 | MtrunA17_Chr2g0325641 | 51.724 | 319 | 119 | 4 | 289 | 579 | 1 | 312 | 3.45e-70 | 230 |
| Msa0300620 | MtrunA17_Chr2g0325621 | 42.931 | 389 | 166 | 10 | 47 | 403 | 13 | 377 | 3.29e-66 | 228 |
| Msa0300620 | MtrunA17_Chr2g0325621 | 44.262 | 305 | 124 | 6 | 304 | 578 | 110 | 398 | 5.55e-41 | 158 |
| Msa0300620 | MtrunA17_Chr2g0325651 | 41.981 | 424 | 166 | 15 | 2 | 395 | 15 | 388 | 2.13e-61 | 208 |
| Msa0300620 | MtrunA17_Chr2g0325651 | 37.049 | 305 | 136 | 8 | 274 | 557 | 113 | 382 | 2.03e-27 | 114 |
| Msa0300620 | MtrunA17_Chr5g0434751 | 51.447 | 311 | 128 | 4 | 289 | 591 | 1 | 296 | 2.78e-60 | 202 |
| Msa0300620 | MtrunA17_Chr5g0434751 | 36.594 | 276 | 135 | 4 | 232 | 478 | 3 | 267 | 1.25e-20 | 92.8 |
| Msa0300620 | MtrunA17_Chr5g0434751 | 36.614 | 254 | 134 | 6 | 150 | 389 | 22 | 262 | 2.97e-20 | 91.7 |
| Msa0300620 | MtrunA17_Chr5g0434751 | 36.458 | 288 | 147 | 6 | 165 | 437 | 2 | 268 | 2.38e-19 | 89.0 |
| Msa0300620 | MtrunA17_Chr2g0280141 | 32.931 | 580 | 288 | 11 | 50 | 578 | 25 | 554 | 5.03e-59 | 211 |
| Msa0300620 | MtrunA17_Chr2g0333341 | 37.740 | 469 | 236 | 15 | 1 | 434 | 1 | 448 | 6.96e-56 | 199 |
| Msa0300620 | MtrunA17_Chr2g0333341 | 30.625 | 320 | 161 | 10 | 280 | 559 | 149 | 447 | 1.77e-14 | 76.6 |
| Msa0300620 | MtrunA17_Chr2g0325261 | 39.726 | 365 | 154 | 11 | 1 | 359 | 2 | 306 | 6.63e-53 | 183 |
| Msa0300620 | MtrunA17_Chr2g0325261 | 33.488 | 215 | 125 | 4 | 285 | 485 | 96 | 306 | 1.05e-16 | 81.3 |
| Msa0300620 | MtrunA17_Chr2g0325261 | 51.190 | 84 | 41 | 0 | 429 | 512 | 222 | 305 | 1.66e-13 | 71.6 |
| Msa0300620 | MtrunA17_Chr2g0325341 | 39.726 | 365 | 154 | 11 | 1 | 359 | 2 | 306 | 6.63e-53 | 183 |
| Msa0300620 | MtrunA17_Chr2g0325341 | 33.488 | 215 | 125 | 4 | 285 | 485 | 96 | 306 | 1.05e-16 | 81.3 |
| Msa0300620 | MtrunA17_Chr2g0325341 | 51.190 | 84 | 41 | 0 | 429 | 512 | 222 | 305 | 1.66e-13 | 71.6 |
| Msa0300620 | MtrunA17_Chr5g0434741 | 37.228 | 368 | 156 | 11 | 1 | 357 | 1 | 304 | 4.81e-47 | 167 |
| Msa0300620 | MtrunA17_Chr5g0434741 | 36.316 | 190 | 110 | 3 | 307 | 496 | 125 | 303 | 6.19e-16 | 79.0 |
| Msa0300620 | MtrunA17_Chr2g0325611 | 49.091 | 220 | 88 | 3 | 387 | 594 | 125 | 332 | 2.14e-42 | 161 |
| Msa0300620 | MtrunA17_Chr2g0325611 | 40.084 | 237 | 124 | 3 | 195 | 423 | 94 | 320 | 2.31e-28 | 120 |
| Msa0300620 | MtrunA17_Chr2g0325611 | 33.071 | 381 | 207 | 13 | 40 | 413 | 10 | 349 | 8.32e-27 | 115 |
| Msa0300620 | MtrunA17_Chr2g0325201 | 39.338 | 272 | 119 | 4 | 185 | 455 | 2 | 228 | 1.51e-37 | 139 |
| Msa0300620 | MtrunA17_Chr2g0325241 | 43.621 | 243 | 103 | 3 | 310 | 552 | 120 | 328 | 2.39e-35 | 138 |
| Msa0300620 | MtrunA17_Chr2g0325241 | 43.913 | 230 | 94 | 4 | 250 | 469 | 120 | 324 | 1.88e-32 | 130 |
| Msa0300620 | MtrunA17_Chr2g0325241 | 41.631 | 233 | 120 | 6 | 367 | 593 | 121 | 343 | 3.87e-31 | 126 |
| Msa0300620 | MtrunA17_Chr2g0325241 | 38.350 | 206 | 124 | 1 | 295 | 497 | 119 | 324 | 2.02e-24 | 106 |
| Msa0300620 | MtrunA17_Chr2g0325241 | 31.409 | 433 | 178 | 16 | 1 | 426 | 8 | 328 | 6.19e-21 | 95.9 |
| Msa0300620 | MtrunA17_Chr2g0325791 | 54.264 | 129 | 55 | 1 | 378 | 502 | 41 | 169 | 3.88e-26 | 109 |
| Msa0300620 | MtrunA17_Chr2g0325791 | 45.143 | 175 | 68 | 3 | 230 | 404 | 23 | 169 | 1.00e-24 | 105 |
| Msa0300620 | MtrunA17_Chr2g0325791 | 44.025 | 159 | 62 | 5 | 290 | 447 | 24 | 156 | 4.34e-16 | 79.7 |
| Msa0300620 | MtrunA17_Chr2g0325791 | 43.609 | 133 | 57 | 2 | 420 | 548 | 41 | 159 | 3.98e-14 | 73.9 |
| Msa0300620 | MtrunA17_Chr2g0325801 | 72.368 | 76 | 21 | 0 | 122 | 197 | 50 | 125 | 4.95e-26 | 103 |
| Msa0300620 | MtrunA17_Chr2g0325801 | 76.786 | 56 | 12 | 1 | 1 | 56 | 2 | 56 | 7.59e-13 | 65.9 |
| Msa0300620 | MtrunA17_Chr2g0332961 | 33.333 | 285 | 124 | 10 | 80 | 356 | 2 | 228 | 1.61e-21 | 96.7 |
| Msa0300620 | MtrunA17_Chr2g0332961 | 44.796 | 221 | 75 | 7 | 364 | 566 | 37 | 228 | 2.40e-21 | 95.9 |
| Msa0300620 | MtrunA17_Chr2g0332961 | 39.286 | 168 | 85 | 2 | 308 | 475 | 71 | 221 | 7.05e-12 | 67.4 |
| Msa0300620 | MtrunA17_Chr2g0325211 | 45.399 | 163 | 84 | 2 | 396 | 558 | 2 | 159 | 1.38e-19 | 87.0 |
| Msa0300620 | MtrunA17_Chr2g0325211 | 41.615 | 161 | 90 | 1 | 340 | 500 | 2 | 158 | 2.96e-17 | 80.5 |
| Msa0300620 | MtrunA17_Chr2g0325211 | 41.379 | 174 | 84 | 4 | 298 | 471 | 2 | 157 | 1.76e-16 | 78.2 |
| Msa0300620 | MtrunA17_Chr2g0325211 | 40.625 | 160 | 91 | 1 | 284 | 443 | 2 | 157 | 6.63e-15 | 73.6 |
| Msa0300620 | MtrunA17_Chr2g0325211 | 39.423 | 104 | 59 | 1 | 285 | 388 | 59 | 158 | 9.27e-11 | 61.6 |
| Msa0300620 | MtrunA17_Chr3g0140581 | 39.130 | 138 | 73 | 1 | 142 | 268 | 4 | 141 | 6.94e-17 | 78.2 |
| Msa0300620 | MtrunA17_Chr2g0325731 | 67.241 | 58 | 19 | 0 | 289 | 346 | 1 | 58 | 4.24e-16 | 73.2 |
| Msa0300620 | MtrunA17_Chr2g0325731 | 68.966 | 58 | 18 | 0 | 345 | 402 | 1 | 58 | 1.79e-15 | 71.6 |
| Msa0300620 | MtrunA17_Chr2g0325731 | 55.172 | 58 | 26 | 0 | 401 | 458 | 1 | 58 | 2.79e-11 | 59.7 |
| Msa0300620 | MtrunA17_Chr4g0044221 | 29.412 | 221 | 132 | 6 | 146 | 358 | 1 | 205 | 8.69e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 96 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCTCAATCTCTCTCTTTA+TGG | 0.138778 | 2_3:-56062604 | None:intergenic |
| TCGTCAAAATAGTTCATTAA+TGG | 0.190625 | 2_3:-56063797 | None:intergenic |
| AGCAATGATTCCTCAGATTA+TGG | 0.195846 | 2_3:+56062257 | Msa0300620:CDS |
| TATTTCGTCAAGAATTAAAA+TGG | 0.260976 | 2_3:+56062467 | Msa0300620:CDS |
| GTGAACTATCTCATAGAAAT+TGG | 0.276479 | 2_3:+56064955 | Msa0300620:CDS |
| GTAATACACTACCAGTTAAA+AGG | 0.320312 | 2_3:+56062337 | Msa0300620:CDS |
| GCTAATATTGCGAGGATTGC+CGG | 0.335204 | 2_3:+56064979 | Msa0300620:CDS |
| AGATCTTGAAAATAAGAAAA+AGG | 0.341083 | 2_3:+56062635 | Msa0300620:CDS |
| ACAAAGCTTAATAAATTTGA+TGG | 0.341565 | 2_3:+56063734 | Msa0300620:CDS |
| GCAATGATTCCTCAGATTAT+GGG | 0.352268 | 2_3:+56062258 | Msa0300620:CDS |
| TCAAAAGAGGAGGAGTTTAA+AGG | 0.367324 | 2_3:+56063482 | Msa0300620:CDS |
| CTGATTCCAACTCCTTCACT+TGG | 0.380824 | 2_3:-56063379 | None:intergenic |
| ACATGTAATAATAACAATAA+TGG | 0.385710 | 2_3:+56062288 | Msa0300620:CDS |
| TATAAAGAGAAGCAACTTGA+TGG | 0.408541 | 2_3:+56063146 | Msa0300620:CDS |
| TATTTGATGGAGGACTTGAT+TGG | 0.409942 | 2_3:+56062756 | Msa0300620:CDS |
| AATTTATTAAGCTTTGTCTC+TGG | 0.429646 | 2_3:-56063728 | None:intergenic |
| TTGAATCAAGCTCCTTCATT+CGG | 0.436075 | 2_3:-56062959 | None:intergenic |
| TTAAAAGACAAGCAATTTGA+AGG | 0.442022 | 2_3:+56063692 | Msa0300620:CDS |
| GGAAGCACACCTCTATTTGA+TGG | 0.443917 | 2_3:+56062743 | Msa0300620:CDS |
| GAGAATAAGTTCAAAGTACT+AGG | 0.444546 | 2_3:+56063656 | Msa0300620:CDS |
| TTGATTCATGCTCCTTCACC+CGG | 0.446148 | 2_3:-56063001 | None:intergenic |
| CGTTATCATCATACGGTGCT+GGG | 0.451444 | 2_3:-56062416 | None:intergenic |
| AATCATTTGTGGGTTGCAAA+AGG | 0.460427 | 2_3:+56062550 | Msa0300620:CDS |
| GAAGGAGGAATTCAAAGGTC+AGG | 0.471633 | 2_3:+56063529 | Msa0300620:CDS |
| TCAAAAGAAAAGCAATTTGA+AGG | 0.472186 | 2_3:+56063440 | Msa0300620:CDS |
| TCGTTATCATCATACGGTGC+TGG | 0.482747 | 2_3:-56062417 | None:intergenic |
| TTGATTCAAACTCCTTTGCT+CGG | 0.482976 | 2_3:-56063337 | None:intergenic |
| GCAATTGAAAGGACAAGTTA+AGG | 0.485918 | 2_3:+56063115 | Msa0300620:CDS |
| CGAAGCTCGCAAGAAAATCC+AGG | 0.486257 | 2_3:+56062683 | Msa0300620:CDS |
| AAAGCAGCAATTTGAAAGCC+AGG | 0.488186 | 2_3:+56063571 | Msa0300620:CDS |
| GCAAGCCATTTAAAATTGAA+AGG | 0.489730 | 2_3:-56062156 | None:intergenic |
| AGAGAAGGAATTTGAAATCC+AGG | 0.492808 | 2_3:+56062887 | Msa0300620:CDS |
| GTCCATAAAGAGAGAGATTG+AGG | 0.494859 | 2_3:+56062602 | Msa0300620:CDS |
| ACAATTGAAAGGACAAGTTA+AGG | 0.498337 | 2_3:+56063283 | Msa0300620:CDS |
| CATTCACTAGCTCCTTCACC+TGG | 0.501627 | 2_3:-56062905 | None:intergenic |
| GAAGGAGTTTGAATCAAAGA+AGG | 0.501648 | 2_3:+56063511 | Msa0300620:CDS |
| AATACTTTGGATAATTGAGA+AGG | 0.508936 | 2_3:-56064466 | None:intergenic |
| TCAAGTCCTCCATCAAATAG+AGG | 0.517023 | 2_3:-56062752 | None:intergenic |
| TCAAAAGAGGATGAATTTGA+AGG | 0.517933 | 2_3:+56063356 | Msa0300620:CDS |
| AAAAGAAGCATTTCGAGAGC+AGG | 0.517991 | 2_3:+56063402 | Msa0300620:CDS |
| TAGATTCCAGCTCCTTCACA+TGG | 0.519246 | 2_3:-56063211 | None:intergenic |
| TAAATTTGATGGACAAGTGA+AGG | 0.519927 | 2_3:+56063745 | Msa0300620:CDS |
| GTGATTTGAACTCCTCCACT+TGG | 0.520171 | 2_3:-56063085 | None:intergenic |
| TAGAGAAGCAACATGAAGGC+CGG | 0.522149 | 2_3:+56062982 | Msa0300620:CDS |
| CAAAACAGAAGCATTTCGAA+AGG | 0.523138 | 2_3:+56062841 | Msa0300620:CDS |
| AGAACAGCGGAAAGAATTTG+AGG | 0.529889 | 2_3:+56063628 | Msa0300620:CDS |
| TATTGTTTCACTGTCAACTC+AGG | 0.532627 | 2_3:-56063770 | None:intergenic |
| TTTGACGAGGAAACAGAATC+GGG | 0.535253 | 2_3:+56063812 | Msa0300620:CDS |
| CGAAGGCCATGTGAAGGAGC+TGG | 0.538482 | 2_3:+56063205 | Msa0300620:CDS |
| GCATTTCGAAGGCCGAATGA+AGG | 0.542504 | 2_3:+56062947 | Msa0300620:CDS |
| GGAATTTGAATCAAAAGAGA+AGG | 0.545096 | 2_3:+56062872 | Msa0300620:CDS |
| GATAACAACAATGCCTTGCA+CGG | 0.547240 | 2_3:+56062369 | Msa0300620:CDS |
| GCAACATGAAGGCCGGGTGA+AGG | 0.547954 | 2_3:+56062989 | Msa0300620:CDS |
| AGAGAAGCAACATGAAGGCC+GGG | 0.549296 | 2_3:+56062983 | Msa0300620:CDS |
| GGAGTTTGAATCAAAGAAGG+AGG | 0.550239 | 2_3:+56063514 | Msa0300620:CDS |
| TTTCTTAATCGAACCGTGCA+AGG | 0.550857 | 2_3:-56062382 | None:intergenic |
| ATACTTTGGATAATTGAGAA+GGG | 0.550923 | 2_3:-56064465 | None:intergenic |
| AAAGGAGTTTGAATCAAAAG+AGG | 0.554492 | 2_3:+56063343 | Msa0300620:CDS |
| TGAAGAGCAAGTGAAGGAGC+TGG | 0.555980 | 2_3:+56063037 | Msa0300620:CDS |
| TGAAGGCCAAGTGAAGGAGT+TGG | 0.560212 | 2_3:+56063373 | Msa0300620:CDS |
| GAAAATCGATGGCCGAGCAA+AGG | 0.564000 | 2_3:+56063325 | Msa0300620:CDS |
| GCAATTTGAAGGACAAGTGA+AGG | 0.564315 | 2_3:+56063451 | Msa0300620:CDS |
| TGAGGAATCATTGCTGACAA+AGG | 0.566248 | 2_3:-56062249 | None:intergenic |
| GCAATTTGAAGGACAAGTCA+AGG | 0.571346 | 2_3:+56063703 | Msa0300620:CDS |
| GGAGTTTAAAGGTCAAGTGA+AGG | 0.577732 | 2_3:+56063493 | Msa0300620:CDS |
| GAAGGAGTTCCAGTCAAAAG+AGG | 0.579907 | 2_3:+56063469 | Msa0300620:CDS |
| AGAATAAGTTCAAAGTACTA+GGG | 0.580517 | 2_3:+56063657 | Msa0300620:CDS |
| TCACAACAGAGGCAATTGAA+AGG | 0.580934 | 2_3:+56063104 | Msa0300620:CDS |
| GCATTTCGAGAGCAGGCTGA+AGG | 0.586547 | 2_3:+56063409 | Msa0300620:CDS |
| TAATGGTTCTGTTAAGAAGA+GGG | 0.588477 | 2_3:+56062305 | Msa0300620:CDS |
| TCAATAGAGAAGCAACATGA+AGG | 0.588760 | 2_3:+56062978 | Msa0300620:CDS |
| GGAATTTGAAATCCAGGTGA+AGG | 0.590644 | 2_3:+56062893 | Msa0300620:CDS |
| ATAATGGTTCTGTTAAGAAG+AGG | 0.593792 | 2_3:+56062304 | Msa0300620:CDS |
| GTTAAGAAGAGGGATACTAC+TGG | 0.594551 | 2_3:+56062315 | Msa0300620:CDS |
| CAAAATTGAAGAATGTGTCA+AGG | 0.598746 | 2_3:+56062707 | Msa0300620:CDS |
| TGAATTTGAAGGCCAAGTGA+AGG | 0.606809 | 2_3:+56063367 | Msa0300620:CDS |
| GATAGAACTTCATCAAGTCA+AGG | 0.606983 | 2_3:+56062809 | Msa0300620:CDS |
| TGTGAAGACTTTGAATCTGA+AGG | 0.609221 | 2_3:+56062213 | Msa0300620:CDS |
| GCATTTCGAAAGGCAAGTGA+AGG | 0.609390 | 2_3:+56062851 | Msa0300620:CDS |
| TCAAAGAAGGAGGAATTCAA+AGG | 0.609408 | 2_3:+56063524 | Msa0300620:CDS |
| TCATCGTCGTTATCATCATA+CGG | 0.618345 | 2_3:-56062423 | None:intergenic |
| TCAAAAGTGAGACAATTGAA+AGG | 0.620856 | 2_3:+56063272 | Msa0300620:CDS |
| GGAGTTCCAGTCAAAAGAGG+AGG | 0.632267 | 2_3:+56063472 | Msa0300620:CDS |
| TGTAAAGAGAAGAAAATCGA+TGG | 0.632784 | 2_3:+56063314 | Msa0300620:CDS |
| GAAGCTCGCAAGAAAATCCA+GGG | 0.635919 | 2_3:+56062684 | Msa0300620:CDS |
| GCTGAAGAAAGAACTCACAT+TGG | 0.636049 | 2_3:+56062521 | Msa0300620:CDS |
| AGAATTCGAAGGCCATGTGA+AGG | 0.636837 | 2_3:+56063199 | Msa0300620:CDS |
| GTTCTCAAACCCATAATCTG+AGG | 0.639071 | 2_3:-56062267 | None:intergenic |
| CGGTTCGATTAAGAAATCAA+AGG | 0.648202 | 2_3:+56062389 | Msa0300620:CDS |
| ACAAAACAGAAGCATTTCGA+AGG | 0.648678 | 2_3:+56062936 | Msa0300620:CDS |
| AGAAGCAATTTGAAGAACAG+CGG | 0.652301 | 2_3:+56063615 | Msa0300620:CDS |
| AAATTGGAGCTAATATTGCG+AGG | 0.654195 | 2_3:+56064971 | Msa0300620:CDS |
| GAAGCAACTTGATGGACGAG+TGG | 0.655238 | 2_3:+56063154 | Msa0300620:CDS |
| GTTATCATCATACGGTGCTG+GGG | 0.667774 | 2_3:-56062415 | None:intergenic |
| AGCACACCTCTATTTGATGG+AGG | 0.669820 | 2_3:+56062746 | Msa0300620:CDS |
| AGGAGTTCAAATCACAACAG+AGG | 0.718141 | 2_3:+56063093 | Msa0300620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTTATGTTATATATAT+TGG | + | chr2_3:56064826-56064845 | Msa0300620:intron | 10.0% |
| !!! | TTTGTTATGTTATATATATT+GGG | + | chr2_3:56064827-56064846 | Msa0300620:intron | 10.0% |
| !! | ACATGTAATAATAACAATAA+TGG | + | chr2_3:56062288-56062307 | Msa0300620:CDS | 15.0% |
| !! | AAAAAGGAAATTATTTATGT+TGG | + | chr2_3:56062651-56062670 | Msa0300620:CDS | 15.0% |
| !! | TTGTTATGTTATATATATTG+GGG | + | chr2_3:56064828-56064847 | Msa0300620:intron | 15.0% |
| !!! | AAGAACCTTTCAATTTTAAA+TGG | + | chr2_3:56062151-56062170 | Msa0300620:CDS | 20.0% |
| !!! | ATTTTAATTCTTGACGAAAT+AGG | - | chr2_3:56062468-56062487 | None:intergenic | 20.0% |
| !! | TATTTCGTCAAGAATTAAAA+TGG | + | chr2_3:56062467-56062486 | Msa0300620:CDS | 20.0% |
| !! | AGATCTTGAAAATAAGAAAA+AGG | + | chr2_3:56062635-56062654 | Msa0300620:CDS | 20.0% |
| !! | ACAAAGCTTAATAAATTTGA+TGG | + | chr2_3:56063734-56063753 | Msa0300620:CDS | 20.0% |
| !!! | CAATTATCCAAAGTATTTAA+AGG | + | chr2_3:56064472-56064491 | Msa0300620:intron | 20.0% |
| !! | ATAACAAAACAAAACAATCT+GGG | - | chr2_3:56064933-56064952 | None:intergenic | 20.0% |
| !! | TATAACAAAACAAAACAATC+TGG | - | chr2_3:56064934-56064953 | None:intergenic | 20.0% |
| !!! | AGATTGTTTTGTTTTGTTAT+AGG | + | chr2_3:56064933-56064952 | Msa0300620:intron | 20.0% |
| !!! | GATAAATCAAAGTTTTGTGT+TGG | + | chr2_3:56062117-56062136 | Msa0300620:CDS | 25.0% |
| !! | TCAATTAACATCCTTTTAAC+TGG | - | chr2_3:56062351-56062370 | None:intergenic | 25.0% |
| ! | ATTGGTAGAAAAATCATTTG+TGG | + | chr2_3:56062539-56062558 | Msa0300620:CDS | 25.0% |
| ! | TTGGTAGAAAAATCATTTGT+GGG | + | chr2_3:56062540-56062559 | Msa0300620:CDS | 25.0% |
| ! | TCAAAAAATAGAGAATTCGA+AGG | + | chr2_3:56063188-56063207 | Msa0300620:CDS | 25.0% |
| ! | TCAAAAGAAAAGCAATTTGA+AGG | + | chr2_3:56063440-56063459 | Msa0300620:CDS | 25.0% |
| !! | AGAATAAGTTCAAAGTACTA+GGG | + | chr2_3:56063657-56063676 | Msa0300620:CDS | 25.0% |
| ! | TTAAAAGACAAGCAATTTGA+AGG | + | chr2_3:56063692-56063711 | Msa0300620:CDS | 25.0% |
| !! | AATTTATTAAGCTTTGTCTC+TGG | - | chr2_3:56063731-56063750 | None:intergenic | 25.0% |
| ! | TCGTCAAAATAGTTCATTAA+TGG | - | chr2_3:56063800-56063819 | None:intergenic | 25.0% |
| !!! | ATTAATGAACTATTTTGACG+AGG | + | chr2_3:56063799-56063818 | Msa0300620:CDS | 25.0% |
| !!! | AAGTTTGTTATTTCCCTATT+TGG | + | chr2_3:56064120-56064139 | Msa0300620:intron | 25.0% |
| ! | ACACAAAATATGAAAAAGCA+TGG | - | chr2_3:56064159-56064178 | None:intergenic | 25.0% |
| !! | CACATTATTTCTTCTATTTC+AGG | + | chr2_3:56064415-56064434 | Msa0300620:intron | 25.0% |
| !! | TTATTTCTTCTATTTCAGGT+TGG | + | chr2_3:56064419-56064438 | Msa0300620:intron | 25.0% |
| ! | ATACTTTGGATAATTGAGAA+GGG | - | chr2_3:56064468-56064487 | None:intergenic | 25.0% |
| ! | AATACTTTGGATAATTGAGA+AGG | - | chr2_3:56064469-56064488 | None:intergenic | 25.0% |
| ! | TCACATTCCTTTAAATACTT+TGG | - | chr2_3:56064482-56064501 | None:intergenic | 25.0% |
| ! | AAGTATTTAAAGGAATGTGA+AGG | + | chr2_3:56064482-56064501 | Msa0300620:intron | 25.0% |
| ! | TAATTGCATCATTAATCAAG+AGG | - | chr2_3:56064572-56064591 | None:intergenic | 25.0% |
| ! | CTTAAGGAACATAAATTTAG+AGG | - | chr2_3:56064658-56064677 | None:intergenic | 25.0% |
| !!! | GTTCCTTAAGTTTTTGTTTT+TGG | + | chr2_3:56064668-56064687 | Msa0300620:intron | 25.0% |
| ! | AAGCCAAAAACAAAAACTTA+AGG | - | chr2_3:56064674-56064693 | None:intergenic | 25.0% |
| ! | AATAAAACAGAACTCATGAT+AGG | - | chr2_3:56064740-56064759 | None:intergenic | 25.0% |
| ! | GCAAGCCATTTAAAATTGAA+AGG | - | chr2_3:56062159-56062178 | None:intergenic | 30.0% |
| ! | ATAATGGTTCTGTTAAGAAG+AGG | + | chr2_3:56062304-56062323 | Msa0300620:CDS | 30.0% |
| ! | TAATGGTTCTGTTAAGAAGA+GGG | + | chr2_3:56062305-56062324 | Msa0300620:CDS | 30.0% |
| GTAATACACTACCAGTTAAA+AGG | + | chr2_3:56062337-56062356 | Msa0300620:CDS | 30.0% | |
| CAAAATTGAAGAATGTGTCA+AGG | + | chr2_3:56062707-56062726 | Msa0300620:CDS | 30.0% | |
| GGAATTTGAATCAAAAGAGA+AGG | + | chr2_3:56062872-56062891 | Msa0300620:CDS | 30.0% | |
| TATAAAGAGAAGCAACTTGA+TGG | + | chr2_3:56063146-56063165 | Msa0300620:CDS | 30.0% | |
| TCAAAAGTGAGACAATTGAA+AGG | + | chr2_3:56063272-56063291 | Msa0300620:CDS | 30.0% | |
| ACAATTGAAAGGACAAGTTA+AGG | + | chr2_3:56063283-56063302 | Msa0300620:CDS | 30.0% | |
| TGTAAAGAGAAGAAAATCGA+TGG | + | chr2_3:56063314-56063333 | Msa0300620:CDS | 30.0% | |
| AAAGGAGTTTGAATCAAAAG+AGG | + | chr2_3:56063343-56063362 | Msa0300620:CDS | 30.0% | |
| TCAAAAGAGGATGAATTTGA+AGG | + | chr2_3:56063356-56063375 | Msa0300620:CDS | 30.0% | |
| !! | TTGATTTTAAGTACTCAACC+TGG | - | chr2_3:56063592-56063611 | None:intergenic | 30.0% |
| ! | GAGAATAAGTTCAAAGTACT+AGG | + | chr2_3:56063656-56063675 | Msa0300620:CDS | 30.0% |
| ! | TAAATTTGATGGACAAGTGA+AGG | + | chr2_3:56063745-56063764 | Msa0300620:CDS | 30.0% |
| CAAACAACAGAATCCAAATA+GGG | - | chr2_3:56064136-56064155 | None:intergenic | 30.0% | |
| ! | TTCATTGGTACTCATTTTGT+TGG | + | chr2_3:56064369-56064388 | Msa0300620:intron | 30.0% |
| ! | TCATTTTGTTGGTACTTTTG+TGG | + | chr2_3:56064380-56064399 | Msa0300620:intron | 30.0% |
| !!! | TTTGTTTTTGGCTTTTAGAC+TGG | + | chr2_3:56064680-56064699 | Msa0300620:intron | 30.0% |
| ATATATTGGGGCCATAATAT+AGG | + | chr2_3:56064840-56064859 | Msa0300620:intron | 30.0% | |
| ! | AAGCTTGTTCACCTATATTA+TGG | - | chr2_3:56064854-56064873 | None:intergenic | 30.0% |
| TCTCAGTTCTCAATTCTAAT+AGG | - | chr2_3:56064909-56064928 | None:intergenic | 30.0% | |
| GTGAACTATCTCATAGAAAT+TGG | + | chr2_3:56064955-56064974 | Msa0300620:CDS | 30.0% | |
| TGTGAAGACTTTGAATCTGA+AGG | + | chr2_3:56062213-56062232 | Msa0300620:CDS | 35.0% | |
| AGCAATGATTCCTCAGATTA+TGG | + | chr2_3:56062257-56062276 | Msa0300620:CDS | 35.0% | |
| GCAATGATTCCTCAGATTAT+GGG | + | chr2_3:56062258-56062277 | Msa0300620:CDS | 35.0% | |
| CGGTTCGATTAAGAAATCAA+AGG | + | chr2_3:56062389-56062408 | Msa0300620:CDS | 35.0% | |
| TCATCGTCGTTATCATCATA+CGG | - | chr2_3:56062426-56062445 | None:intergenic | 35.0% | |
| ! | AATCATTTGTGGGTTGCAAA+AGG | + | chr2_3:56062550-56062569 | Msa0300620:CDS | 35.0% |
| ! | TGTCAAGGATTTTGTAGCAA+AGG | + | chr2_3:56062722-56062741 | Msa0300620:CDS | 35.0% |
| TATTTGATGGAGGACTTGAT+TGG | + | chr2_3:56062756-56062775 | Msa0300620:CDS | 35.0% | |
| GATAGAACTTCATCAAGTCA+AGG | + | chr2_3:56062809-56062828 | Msa0300620:CDS | 35.0% | |
| !! | CAAAACAGAAGCATTTCGAA+AGG | + | chr2_3:56062841-56062860 | Msa0300620:CDS | 35.0% |
| ! | AGAGAAGGAATTTGAAATCC+AGG | + | chr2_3:56062887-56062906 | Msa0300620:CDS | 35.0% |
| !! | ACAAAACAGAAGCATTTCGA+AGG | + | chr2_3:56062936-56062955 | Msa0300620:CDS | 35.0% |
| TTGAATCAAGCTCCTTCATT+CGG | - | chr2_3:56062962-56062981 | None:intergenic | 35.0% | |
| TCAATAGAGAAGCAACATGA+AGG | + | chr2_3:56062978-56062997 | Msa0300620:CDS | 35.0% | |
| !! | AGATTTTGAAGAGCAAGTGA+AGG | + | chr2_3:56063031-56063050 | Msa0300620:CDS | 35.0% |
| GCAATTGAAAGGACAAGTTA+AGG | + | chr2_3:56063115-56063134 | Msa0300620:CDS | 35.0% | |
| !!! | GTGTTTTGAAAGTCAAGTTG+AGG | + | chr2_3:56063241-56063260 | Msa0300620:CDS | 35.0% |
| TTGATTCAAACTCCTTTGCT+CGG | - | chr2_3:56063340-56063359 | None:intergenic | 35.0% | |
| TCAAAAGAGGAGGAGTTTAA+AGG | + | chr2_3:56063482-56063501 | Msa0300620:CDS | 35.0% | |
| GAAGGAGTTTGAATCAAAGA+AGG | + | chr2_3:56063511-56063530 | Msa0300620:CDS | 35.0% | |
| TCAAAGAAGGAGGAATTCAA+AGG | + | chr2_3:56063524-56063543 | Msa0300620:CDS | 35.0% | |
| AGAAGCAATTTGAAGAACAG+CGG | + | chr2_3:56063615-56063634 | Msa0300620:CDS | 35.0% | |
| TATTGTTTCACTGTCAACTC+AGG | - | chr2_3:56063773-56063792 | None:intergenic | 35.0% | |
| ! | TTTTGACGAGGAAACAGAAT+CGG | + | chr2_3:56063811-56063830 | Msa0300620:CDS | 35.0% |
| TAACCTGATCTACACATATG+AGG | + | chr2_3:56063908-56063927 | Msa0300620:intron | 35.0% | |
| AACCTGATCTACACATATGA+GGG | + | chr2_3:56063909-56063928 | Msa0300620:intron | 35.0% | |
| ! | CCAAGTTCACACAGATATTT+TGG | - | chr2_3:56063957-56063976 | None:intergenic | 35.0% |
| CCAAAATATCTGTGTGAACT+TGG | + | chr2_3:56063954-56063973 | Msa0300620:intron | 35.0% | |
| TCCACTGATGAAATGATACA+TGG | + | chr2_3:56064070-56064089 | Msa0300620:intron | 35.0% | |
| ACCATGTATCATTTCATCAG+TGG | - | chr2_3:56064074-56064093 | None:intergenic | 35.0% | |
| GCAAACAACAGAATCCAAAT+AGG | - | chr2_3:56064137-56064156 | None:intergenic | 35.0% | |
| TTGAATGTAATCACACGTGT+CGG | + | chr2_3:56064269-56064288 | Msa0300620:intron | 35.0% | |
| AGAGGTCAAAATGAACACAT+GGG | - | chr2_3:56064554-56064573 | None:intergenic | 35.0% | |
| AAGAGGTCAAAATGAACACA+TGG | - | chr2_3:56064555-56064574 | None:intergenic | 35.0% | |
| ! | TTAGACTGGTTAATTCACTC+TGG | + | chr2_3:56064694-56064713 | Msa0300620:intron | 35.0% |
| !! | TTTATTTTTCCTGCAGTGAC+TGG | + | chr2_3:56064754-56064773 | Msa0300620:intron | 35.0% |
| ATATAGGTGAACAAGCTTCA+AGG | + | chr2_3:56064856-56064875 | Msa0300620:intron | 35.0% | |
| TATAGGTGAACAAGCTTCAA+GGG | + | chr2_3:56064857-56064876 | Msa0300620:intron | 35.0% | |
| AAATTGGAGCTAATATTGCG+AGG | + | chr2_3:56064971-56064990 | Msa0300620:CDS | 35.0% | |
| TGAGGAATCATTGCTGACAA+AGG | - | chr2_3:56062252-56062271 | None:intergenic | 40.0% | |
| GTTCTCAAACCCATAATCTG+AGG | - | chr2_3:56062270-56062289 | None:intergenic | 40.0% | |
| GTTAAGAAGAGGGATACTAC+TGG | + | chr2_3:56062315-56062334 | Msa0300620:CDS | 40.0% | |
| GATAACAACAATGCCTTGCA+CGG | + | chr2_3:56062369-56062388 | Msa0300620:CDS | 40.0% | |
| TTTCTTAATCGAACCGTGCA+AGG | - | chr2_3:56062385-56062404 | None:intergenic | 40.0% | |
| GCTGAAGAAAGAACTCACAT+TGG | + | chr2_3:56062521-56062540 | Msa0300620:CDS | 40.0% | |
| GTCCATAAAGAGAGAGATTG+AGG | + | chr2_3:56062602-56062621 | Msa0300620:CDS | 40.0% | |
| CTCCTCAATCTCTCTCTTTA+TGG | - | chr2_3:56062607-56062626 | None:intergenic | 40.0% | |
| ! | CACATTCTTCAATTTTGCCC+TGG | - | chr2_3:56062704-56062723 | None:intergenic | 40.0% |
| TCAAGTCCTCCATCAAATAG+AGG | - | chr2_3:56062755-56062774 | None:intergenic | 40.0% | |
| ! | GGAATTTGAAATCCAGGTGA+AGG | + | chr2_3:56062893-56062912 | Msa0300620:CDS | 40.0% |
| !! | GAAGAGTTTTGATAGCCAAG+TGG | + | chr2_3:56063070-56063089 | Msa0300620:CDS | 40.0% |
| AGGAGTTCAAATCACAACAG+AGG | + | chr2_3:56063093-56063112 | Msa0300620:CDS | 40.0% | |
| TCACAACAGAGGCAATTGAA+AGG | + | chr2_3:56063104-56063123 | Msa0300620:CDS | 40.0% | |
| TGAATTTGAAGGCCAAGTGA+AGG | + | chr2_3:56063367-56063386 | Msa0300620:CDS | 40.0% | |
| !! | AAAAGAAGCATTTCGAGAGC+AGG | + | chr2_3:56063402-56063421 | Msa0300620:CDS | 40.0% |
| GCAATTTGAAGGACAAGTGA+AGG | + | chr2_3:56063451-56063470 | Msa0300620:CDS | 40.0% | |
| ! | TAAACTCCTCCTCTTTTGAC+TGG | - | chr2_3:56063481-56063500 | None:intergenic | 40.0% |
| GGAGTTTAAAGGTCAAGTGA+AGG | + | chr2_3:56063493-56063512 | Msa0300620:CDS | 40.0% | |
| GGAGTTTGAATCAAAGAAGG+AGG | + | chr2_3:56063514-56063533 | Msa0300620:CDS | 40.0% | |
| AAAGCAGCAATTTGAAAGCC+AGG | + | chr2_3:56063571-56063590 | Msa0300620:CDS | 40.0% | |
| AGAACAGCGGAAAGAATTTG+AGG | + | chr2_3:56063628-56063647 | Msa0300620:CDS | 40.0% | |
| GCAATTTGAAGGACAAGTCA+AGG | + | chr2_3:56063703-56063722 | Msa0300620:CDS | 40.0% | |
| TTTGACGAGGAAACAGAATC+GGG | + | chr2_3:56063812-56063831 | Msa0300620:CDS | 40.0% | |
| ACACATATGAGGGAGCTTAA+AGG | + | chr2_3:56063919-56063938 | Msa0300620:intron | 40.0% | |
| ATATGAGGGAGCTTAAAGGT+AGG | + | chr2_3:56063923-56063942 | Msa0300620:intron | 40.0% | |
| AATGATACATGGTCTCTGTC+TGG | + | chr2_3:56064081-56064100 | Msa0300620:intron | 40.0% | |
| GCCTTTGATCATAAGTGTCA+GGG | + | chr2_3:56064326-56064345 | Msa0300620:intron | 40.0% | |
| GAGGTTATCGCTCATTTCAT+TGG | + | chr2_3:56064354-56064373 | Msa0300620:intron | 40.0% | |
| GAGGTCAAAATGAACACATG+GGG | - | chr2_3:56064553-56064572 | None:intergenic | 40.0% | |
| AACTCATGATAGGCAACTGT+GGG | - | chr2_3:56064730-56064749 | None:intergenic | 40.0% | |
| ! | GTTATCATCATACGGTGCTG+GGG | - | chr2_3:56062418-56062437 | None:intergenic | 45.0% |
| CGTTATCATCATACGGTGCT+GGG | - | chr2_3:56062419-56062438 | None:intergenic | 45.0% | |
| TCGTTATCATCATACGGTGC+TGG | - | chr2_3:56062420-56062439 | None:intergenic | 45.0% | |
| GAAGCTCGCAAGAAAATCCA+GGG | + | chr2_3:56062684-56062703 | Msa0300620:CDS | 45.0% | |
| ! | GGAAGCACACCTCTATTTGA+TGG | + | chr2_3:56062743-56062762 | Msa0300620:CDS | 45.0% |
| AGCACACCTCTATTTGATGG+AGG | + | chr2_3:56062746-56062765 | Msa0300620:CDS | 45.0% | |
| GCATTTCGAAAGGCAAGTGA+AGG | + | chr2_3:56062851-56062870 | Msa0300620:CDS | 45.0% | |
| TAGAGAAGCAACATGAAGGC+CGG | + | chr2_3:56062982-56063001 | Msa0300620:CDS | 45.0% | |
| TTGATTCATGCTCCTTCACC+CGG | - | chr2_3:56063004-56063023 | None:intergenic | 45.0% | |
| !! | GAGTTTTGATAGCCAAGTGG+AGG | + | chr2_3:56063073-56063092 | Msa0300620:CDS | 45.0% |
| GTGATTTGAACTCCTCCACT+TGG | - | chr2_3:56063088-56063107 | None:intergenic | 45.0% | |
| AGAATTCGAAGGCCATGTGA+AGG | + | chr2_3:56063199-56063218 | Msa0300620:CDS | 45.0% | |
| TAGATTCCAGCTCCTTCACA+TGG | - | chr2_3:56063214-56063233 | None:intergenic | 45.0% | |
| CTGATTCCAACTCCTTCACT+TGG | - | chr2_3:56063382-56063401 | None:intergenic | 45.0% | |
| GAAGGAGTTCCAGTCAAAAG+AGG | + | chr2_3:56063469-56063488 | Msa0300620:CDS | 45.0% | |
| GAAGGAGGAATTCAAAGGTC+AGG | + | chr2_3:56063529-56063548 | Msa0300620:CDS | 45.0% | |
| CTCCCTCATATGTGTAGATC+AGG | - | chr2_3:56063914-56063933 | None:intergenic | 45.0% | |
| TCTGATGCTTGTGTCTGTGT+TGG | - | chr2_3:56064200-56064219 | None:intergenic | 45.0% | |
| GTCCAGTGTTCAACATGTGT+CGG | - | chr2_3:56064304-56064323 | None:intergenic | 45.0% | |
| CGCCTTTGATCATAAGTGTC+AGG | + | chr2_3:56064325-56064344 | Msa0300620:intron | 45.0% | |
| GCCCTGACACTTATGATCAA+AGG | - | chr2_3:56064330-56064349 | None:intergenic | 45.0% | |
| CATAAGTGTCAGGGCTATAG+AGG | + | chr2_3:56064335-56064354 | Msa0300620:intron | 45.0% | |
| GAACTCATGATAGGCAACTG+TGG | - | chr2_3:56064731-56064750 | None:intergenic | 45.0% | |
| GCTAATATTGCGAGGATTGC+CGG | + | chr2_3:56064979-56064998 | Msa0300620:CDS | 45.0% | |
| CGAAGCTCGCAAGAAAATCC+AGG | + | chr2_3:56062683-56062702 | Msa0300620:CDS | 50.0% | |
| CATTCACTAGCTCCTTCACC+TGG | - | chr2_3:56062908-56062927 | None:intergenic | 50.0% | |
| GCATTTCGAAGGCCGAATGA+AGG | + | chr2_3:56062947-56062966 | Msa0300620:CDS | 50.0% | |
| AGAGAAGCAACATGAAGGCC+GGG | + | chr2_3:56062983-56063002 | Msa0300620:CDS | 50.0% | |
| TGAAGAGCAAGTGAAGGAGC+TGG | + | chr2_3:56063037-56063056 | Msa0300620:CDS | 50.0% | |
| ! | GAAGCAACTTGATGGACGAG+TGG | + | chr2_3:56063154-56063173 | Msa0300620:CDS | 50.0% |
| GAAAATCGATGGCCGAGCAA+AGG | + | chr2_3:56063325-56063344 | Msa0300620:CDS | 50.0% | |
| TGAAGGCCAAGTGAAGGAGT+TGG | + | chr2_3:56063373-56063392 | Msa0300620:CDS | 50.0% | |
| GGAGTTCCAGTCAAAAGAGG+AGG | + | chr2_3:56063472-56063491 | Msa0300620:CDS | 50.0% | |
| CACCGACACATGTTGAACAC+TGG | + | chr2_3:56064299-56064318 | Msa0300620:intron | 50.0% | |
| CAAGATCAACCAGTCACTGC+AGG | - | chr2_3:56064766-56064785 | None:intergenic | 50.0% | |
| GCATTTCGAGAGCAGGCTGA+AGG | + | chr2_3:56063409-56063428 | Msa0300620:CDS | 55.0% | |
| ATGGGGATTTCCAGCTGCAG+TGG | - | chr2_3:56064536-56064555 | None:intergenic | 55.0% | |
| GCAACATGAAGGCCGGGTGA+AGG | + | chr2_3:56062989-56063008 | Msa0300620:CDS | 60.0% | |
| CGAAGGCCATGTGAAGGAGC+TGG | + | chr2_3:56063205-56063224 | Msa0300620:CDS | 60.0% | |
| TGAGCTTGAGCCACTGCAGC+TGG | + | chr2_3:56064523-56064542 | Msa0300620:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 56062099 | 56065008 | 56062099 | ID=Msa0300620;Name=Msa0300620 |
| chr2_3 | mRNA | 56062099 | 56065008 | 56062099 | ID=Msa0300620-mRNA-1;Parent=Msa0300620;Name=Msa0300620-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|0.66|1|1|3|0|611 |
| chr2_3 | exon | 56062099 | 56063833 | 56062099 | ID=Msa0300620-mRNA-1:exon:17916;Parent=Msa0300620-mRNA-1 |
| chr2_3 | exon | 56064437 | 56064483 | 56064437 | ID=Msa0300620-mRNA-1:exon:17917;Parent=Msa0300620-mRNA-1 |
| chr2_3 | exon | 56064955 | 56065008 | 56064955 | ID=Msa0300620-mRNA-1:exon:17918;Parent=Msa0300620-mRNA-1 |
| chr2_3 | CDS | 56062099 | 56063833 | 56062099 | ID=Msa0300620-mRNA-1:cds;Parent=Msa0300620-mRNA-1 |
| chr2_3 | CDS | 56064437 | 56064483 | 56064437 | ID=Msa0300620-mRNA-1:cds;Parent=Msa0300620-mRNA-1 |
| chr2_3 | CDS | 56064955 | 56065008 | 56064955 | ID=Msa0300620-mRNA-1:cds;Parent=Msa0300620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
