Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248040 | XP_013445823.1 | 88.621 | 290 | 26 | 3 | 1 | 287 | 1 | 286 | 2.70e-169 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248040 | sp|Q02283|HAT5_ARATH | 61.682 | 107 | 41 | 0 | 88 | 194 | 66 | 172 | 6.00e-39 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248040 | A0A072TQU2 | 88.621 | 290 | 26 | 3 | 1 | 287 | 1 | 286 | 1.29e-169 | 480 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1248040 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa1248040 | 0.817088 | 3.952606e-52 | -8.615850e-47 |
| Msa0022640 | Msa1248040 | 0.818565 | 1.834478e-52 | -8.615850e-47 |
| Msa0106790 | Msa1248040 | 0.814781 | 1.293574e-51 | -8.615850e-47 |
| Msa0118380 | Msa1248040 | 0.843472 | 1.372334e-58 | -8.615850e-47 |
| Msa0118400 | Msa1248040 | 0.839350 | 1.670106e-57 | -8.615850e-47 |
| Msa0682530 | Msa1248040 | 0.822615 | 2.154583e-53 | -8.615850e-47 |
| Msa0707220 | Msa1248040 | 0.804552 | 2.045360e-49 | -8.615850e-47 |
| Msa0739580 | Msa1248040 | 0.804912 | 1.720170e-49 | -8.615850e-47 |
| Msa0130570 | Msa1248040 | 0.801438 | 9.005835e-49 | -8.615850e-47 |
| Msa0147560 | Msa1248040 | 0.801021 | 1.096097e-48 | -8.615850e-47 |
| Msa0161680 | Msa1248040 | 0.827925 | 1.194898e-54 | -8.615850e-47 |
| Msa0203030 | Msa1248040 | 0.814229 | 1.713859e-51 | -8.615850e-47 |
| Msa0212150 | Msa1248040 | 0.804099 | 2.541852e-49 | -8.615850e-47 |
| Msa0219190 | Msa1248040 | 0.801849 | 7.414049e-49 | -8.615850e-47 |
| Msa1228190 | Msa1248040 | 0.831031 | 2.101340e-55 | -8.615850e-47 |
| Msa1233560 | Msa1248040 | 0.804558 | 2.039209e-49 | -8.615850e-47 |
| Msa1248040 | Msa1271260 | 0.830786 | 2.413557e-55 | -8.615850e-47 |
| Msa1248040 | Msa1378770 | 0.804785 | 1.828696e-49 | -8.615850e-47 |
| Msa1248040 | Msa1420060 | 0.817846 | 2.667894e-52 | -8.615850e-47 |
| Msa1248040 | Msa1424690 | 0.818535 | 1.863228e-52 | -8.615850e-47 |
| Msa1248040 | Msa1431850 | 0.807385 | 5.188336e-50 | -8.615850e-47 |
| Msa0378500 | Msa1248040 | 0.817686 | 2.899530e-52 | -8.615850e-47 |
| Msa0436500 | Msa1248040 | 0.816985 | 4.169432e-52 | -8.615850e-47 |
| Msa0999360 | Msa1248040 | 0.817150 | 3.828987e-52 | -8.615850e-47 |
| Msa0999410 | Msa1248040 | 0.812318 | 4.503649e-51 | -8.615850e-47 |
| Msa1034680 | Msa1248040 | 0.825753 | 3.947382e-54 | -8.615850e-47 |
| Msa0252770 | Msa1248040 | 0.829454 | 5.101657e-55 | -8.615850e-47 |
| Msa0300620 | Msa1248040 | 0.812883 | 3.388445e-51 | -8.615850e-47 |
| Msa0322830 | Msa1248040 | 0.804511 | 2.086121e-49 | -8.615850e-47 |
| Msa0322840 | Msa1248040 | 0.809110 | 2.224275e-50 | -8.615850e-47 |
| Msa0329620 | Msa1248040 | 0.845997 | 2.863497e-59 | -8.615850e-47 |
| Msa1196080 | Msa1248040 | 0.900798 | 5.108902e-78 | -8.615850e-47 |
| Msa0584130 | Msa1248040 | 0.825409 | 4.761602e-54 | -8.615850e-47 |
| Msa0844560 | Msa1248040 | 0.801622 | 8.255390e-49 | -8.615850e-47 |
| Msa0867350 | Msa1248040 | 0.803961 | 2.714742e-49 | -8.615850e-47 |
| Msa0885060 | Msa1248040 | 0.834533 | 2.837403e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248040 | MtrunA17_Chr8g0362751 | 88.621 | 290 | 26 | 3 | 1 | 287 | 1 | 286 | 2.49e-173 | 480 |
| Msa1248040 | MtrunA17_Chr5g0415941 | 54.054 | 333 | 98 | 11 | 1 | 287 | 1 | 324 | 6.15e-100 | 295 |
| Msa1248040 | MtrunA17_Chr4g0060031 | 40.483 | 331 | 136 | 9 | 10 | 287 | 15 | 337 | 3.73e-52 | 174 |
| Msa1248040 | MtrunA17_Chr6g0450991 | 44.324 | 185 | 91 | 2 | 40 | 219 | 12 | 189 | 1.17e-40 | 142 |
| Msa1248040 | MtrunA17_Chr8g0381741 | 47.826 | 161 | 63 | 4 | 82 | 223 | 45 | 203 | 2.71e-37 | 134 |
| Msa1248040 | MtrunA17_Chr3g0123691 | 57.895 | 114 | 48 | 0 | 86 | 199 | 56 | 169 | 1.30e-36 | 132 |
| Msa1248040 | MtrunA17_Chr5g0416391 | 55.303 | 132 | 55 | 3 | 56 | 185 | 43 | 172 | 1.90e-35 | 129 |
| Msa1248040 | MtrunA17_Chr8g0362151 | 52.239 | 134 | 62 | 1 | 52 | 185 | 41 | 172 | 5.61e-35 | 127 |
| Msa1248040 | MtrunA17_Chr3g0119291 | 55.932 | 118 | 49 | 1 | 90 | 207 | 59 | 173 | 1.99e-34 | 125 |
| Msa1248040 | MtrunA17_Chr6g0453021 | 60.714 | 112 | 43 | 1 | 75 | 185 | 80 | 191 | 2.79e-34 | 125 |
| Msa1248040 | MtrunA17_Chr7g0217111 | 57.292 | 96 | 41 | 0 | 90 | 185 | 80 | 175 | 7.51e-26 | 103 |
| Msa1248040 | MtrunA17_Chr8g0346251 | 37.640 | 178 | 88 | 6 | 94 | 265 | 45 | 205 | 8.42e-25 | 99.8 |
| Msa1248040 | MtrunA17_Chr7g0265521 | 51.546 | 97 | 40 | 1 | 90 | 186 | 63 | 152 | 1.51e-24 | 98.6 |
| Msa1248040 | MtrunA17_Chr3g0127511 | 52.747 | 91 | 43 | 0 | 92 | 182 | 40 | 130 | 1.87e-23 | 96.3 |
| Msa1248040 | MtrunA17_Chr1g0179581 | 59.722 | 72 | 29 | 0 | 90 | 161 | 28 | 99 | 6.03e-23 | 90.9 |
| Msa1248040 | MtrunA17_Chr5g0403701 | 58.571 | 70 | 29 | 0 | 90 | 159 | 53 | 122 | 3.36e-19 | 83.6 |
| Msa1248040 | MtrunA17_Chr5g0403691 | 58.571 | 70 | 29 | 0 | 90 | 159 | 53 | 122 | 1.13e-18 | 82.8 |
| Msa1248040 | MtrunA17_Chr4g0071411 | 47.253 | 91 | 41 | 1 | 93 | 183 | 91 | 174 | 8.33e-18 | 80.1 |
| Msa1248040 | MtrunA17_Chr4g0055851 | 42.735 | 117 | 58 | 2 | 69 | 183 | 97 | 206 | 1.76e-17 | 80.5 |
| Msa1248040 | MtrunA17_Chr7g0258831 | 39.231 | 130 | 64 | 3 | 54 | 183 | 132 | 246 | 4.96e-17 | 79.3 |
| Msa1248040 | MtrunA17_Chr1g0175651 | 42.241 | 116 | 55 | 2 | 68 | 183 | 137 | 240 | 2.46e-16 | 77.4 |
| Msa1248040 | MtrunA17_Chr1g0151971 | 46.875 | 96 | 44 | 1 | 88 | 183 | 128 | 216 | 4.25e-16 | 76.6 |
| Msa1248040 | MtrunA17_Chr5g0400781 | 45.745 | 94 | 44 | 1 | 90 | 183 | 123 | 209 | 7.52e-16 | 75.9 |
| Msa1248040 | MtrunA17_Chr5g0399491 | 41.880 | 117 | 57 | 2 | 67 | 183 | 117 | 222 | 1.65e-15 | 75.1 |
| Msa1248040 | MtrunA17_Chr4g0044091 | 43.750 | 96 | 47 | 1 | 88 | 183 | 63 | 151 | 1.83e-15 | 73.2 |
| Msa1248040 | MtrunA17_Chr4g0054421 | 43.519 | 108 | 51 | 2 | 76 | 183 | 116 | 213 | 1.94e-15 | 74.7 |
| Msa1248040 | MtrunA17_Chr2g0308611 | 39.474 | 114 | 62 | 1 | 70 | 183 | 180 | 286 | 3.11e-15 | 74.7 |
| Msa1248040 | MtrunA17_Chr8g0335131 | 45.745 | 94 | 44 | 1 | 90 | 183 | 146 | 232 | 1.18e-14 | 72.8 |
| Msa1248040 | MtrunA17_Chr3g0135331 | 50.000 | 72 | 36 | 0 | 90 | 161 | 145 | 216 | 2.49e-13 | 68.9 |
| Msa1248040 | MtrunA17_Chr2g0299031 | 41.489 | 94 | 48 | 1 | 90 | 183 | 82 | 168 | 6.66e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248040 | AT3G01470.1 | 61.682 | 107 | 41 | 0 | 88 | 194 | 66 | 172 | 6.10e-40 | 140 |
| Msa1248040 | AT4G40060.1 | 50.340 | 147 | 64 | 3 | 79 | 219 | 45 | 188 | 3.79e-38 | 136 |
| Msa1248040 | AT2G22430.1 | 64.948 | 97 | 34 | 0 | 90 | 186 | 62 | 158 | 1.01e-35 | 130 |
| Msa1248040 | AT1G69780.1 | 57.265 | 117 | 49 | 1 | 70 | 185 | 64 | 180 | 3.12e-35 | 129 |
| Msa1248040 | AT5G15150.1 | 47.712 | 153 | 61 | 2 | 33 | 185 | 77 | 210 | 1.31e-34 | 127 |
| Msa1248040 | AT5G65310.2 | 63.918 | 97 | 35 | 0 | 90 | 186 | 54 | 150 | 1.91e-34 | 127 |
| Msa1248040 | AT5G65310.1 | 63.918 | 97 | 35 | 0 | 90 | 186 | 72 | 168 | 2.10e-34 | 127 |
| Msa1248040 | AT1G27045.5 | 37.811 | 201 | 99 | 3 | 75 | 275 | 10 | 184 | 1.54e-32 | 119 |
| Msa1248040 | AT1G27045.3 | 37.811 | 201 | 99 | 3 | 75 | 275 | 10 | 184 | 1.54e-32 | 119 |
| Msa1248040 | AT1G27045.2 | 37.811 | 201 | 99 | 3 | 75 | 275 | 2 | 176 | 1.85e-32 | 118 |
| Msa1248040 | AT1G27045.1 | 39.583 | 192 | 90 | 3 | 75 | 266 | 53 | 218 | 4.93e-32 | 118 |
| Msa1248040 | AT3G01220.1 | 59.375 | 96 | 39 | 0 | 90 | 185 | 87 | 182 | 3.15e-31 | 118 |
| Msa1248040 | AT1G27045.4 | 39.303 | 201 | 103 | 5 | 75 | 266 | 53 | 243 | 4.79e-30 | 114 |
| Msa1248040 | AT1G26960.1 | 52.174 | 115 | 54 | 1 | 72 | 185 | 52 | 166 | 3.70e-28 | 109 |
| Msa1248040 | AT2G46680.1 | 48.182 | 110 | 57 | 0 | 84 | 193 | 26 | 135 | 1.07e-25 | 102 |
| Msa1248040 | AT2G46680.2 | 50.515 | 97 | 48 | 0 | 84 | 180 | 26 | 122 | 2.29e-24 | 99.4 |
| Msa1248040 | AT3G61890.1 | 50.495 | 101 | 49 | 1 | 93 | 193 | 33 | 132 | 3.41e-24 | 98.2 |
| Msa1248040 | AT4G36740.1 | 48.182 | 110 | 50 | 1 | 90 | 199 | 55 | 157 | 5.23e-23 | 94.7 |
| Msa1248040 | AT4G36740.2 | 48.182 | 110 | 50 | 1 | 90 | 199 | 56 | 158 | 5.57e-23 | 94.4 |
| Msa1248040 | AT5G03790.1 | 41.176 | 136 | 77 | 1 | 90 | 225 | 77 | 209 | 6.35e-23 | 94.7 |
| Msa1248040 | AT5G03790.2 | 59.722 | 72 | 29 | 0 | 90 | 161 | 77 | 148 | 6.17e-22 | 91.3 |
| Msa1248040 | AT2G36610.1 | 46.667 | 105 | 41 | 2 | 87 | 183 | 68 | 165 | 2.53e-21 | 89.4 |
| Msa1248040 | AT5G66700.1 | 58.571 | 70 | 29 | 0 | 90 | 159 | 71 | 140 | 6.79e-21 | 89.4 |
| Msa1248040 | AT2G18550.1 | 45.455 | 110 | 53 | 1 | 90 | 199 | 61 | 163 | 6.81e-21 | 89.0 |
| Msa1248040 | AT5G06710.1 | 43.750 | 112 | 51 | 2 | 72 | 183 | 177 | 276 | 9.21e-18 | 82.4 |
| Msa1248040 | AT5G53980.1 | 41.837 | 98 | 57 | 0 | 90 | 187 | 11 | 108 | 3.99e-17 | 77.0 |
| Msa1248040 | AT4G37790.1 | 42.857 | 112 | 52 | 2 | 72 | 183 | 113 | 212 | 4.77e-17 | 79.7 |
| Msa1248040 | AT5G47370.1 | 44.681 | 94 | 45 | 1 | 90 | 183 | 130 | 216 | 5.32e-15 | 73.9 |
| Msa1248040 | AT2G22800.1 | 45.745 | 94 | 44 | 1 | 90 | 183 | 113 | 199 | 8.64e-15 | 73.2 |
| Msa1248040 | AT2G01430.1 | 36.257 | 171 | 89 | 5 | 14 | 183 | 74 | 225 | 9.73e-15 | 73.2 |
| Msa1248040 | AT2G44910.1 | 45.745 | 94 | 44 | 1 | 90 | 183 | 163 | 249 | 1.23e-14 | 73.2 |
| Msa1248040 | AT4G17460.1 | 40.870 | 115 | 58 | 3 | 76 | 189 | 123 | 228 | 3.07e-14 | 71.6 |
| Msa1248040 | AT4G16780.1 | 40.541 | 111 | 52 | 2 | 73 | 183 | 119 | 215 | 3.10e-14 | 71.6 |
| Msa1248040 | AT3G60390.1 | 44.681 | 94 | 45 | 1 | 90 | 183 | 162 | 248 | 3.11e-14 | 72.0 |
| Msa1248040 | AT5G06710.4 | 49.296 | 71 | 31 | 1 | 72 | 142 | 177 | 242 | 2.40e-13 | 68.9 |
| Msa1248040 | AT2G01430.2 | 44.286 | 70 | 39 | 0 | 73 | 142 | 122 | 191 | 2.01e-11 | 62.8 |
| Msa1248040 | AT1G70920.2 | 40.594 | 101 | 50 | 2 | 75 | 168 | 27 | 124 | 3.82e-11 | 61.2 |
| Msa1248040 | AT1G70920.1 | 42.553 | 94 | 47 | 1 | 90 | 183 | 69 | 155 | 3.89e-11 | 61.6 |
Find 59 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATCTTGCTCTCCTATTT+TGG | 0.157164 | 8_2:+41464336 | None:intergenic |
| GTCAGATGTGAATAAATTTA+AGG | 0.209841 | 8_2:+41465495 | None:intergenic |
| TGATAATAAACTTAGCTTAA+AGG | 0.225467 | 8_2:+41465337 | None:intergenic |
| GCAAGTTGAACTTTCCTTCC+AGG | 0.262711 | 8_2:+41464401 | None:intergenic |
| CATCCAACATCTTCAACTTT+AGG | 0.279222 | 8_2:+41463374 | None:intergenic |
| TGGCTATATGGTTCCAAAAT+AGG | 0.286402 | 8_2:-41464349 | Msa1248040:CDS |
| ATGGAACATTCAAGATGTTT+TGG | 0.287450 | 8_2:+41463402 | None:intergenic |
| GGATTCAGGTTCCAATTCTA+TGG | 0.296135 | 8_2:-41464621 | Msa1248040:intron |
| CACAACATCAACCATAGAAT+TGG | 0.343400 | 8_2:+41464610 | None:intergenic |
| GATAATAAACTTAGCTTAAA+GGG | 0.351625 | 8_2:+41465338 | None:intergenic |
| TTTCAAGAAAATGAACTTGT+TGG | 0.363914 | 8_2:+41464453 | None:intergenic |
| TGTGAAAATTCTGTCTGGTT+TGG | 0.364413 | 8_2:+41463446 | None:intergenic |
| AGCCAAGACAAGTGGCTATA+TGG | 0.377381 | 8_2:-41464361 | Msa1248040:CDS |
| CATCTTGTGAAAATTCTGTC+TGG | 0.382903 | 8_2:+41463441 | None:intergenic |
| GTGAATAAATTTAAGGGCAG+AGG | 0.391942 | 8_2:+41465502 | None:intergenic |
| TGAGCTCGTCAACTCTCTCT+TGG | 0.402549 | 8_2:-41465214 | Msa1248040:CDS |
| ATGGTTGATGTTGTGAATGT+TGG | 0.424290 | 8_2:-41464602 | Msa1248040:CDS |
| TCTTCAACTTTAGGTATGAA+TGG | 0.429614 | 8_2:+41463383 | None:intergenic |
| TTGGTTCCACATCTGAGGAT+TGG | 0.438878 | 8_2:+41463465 | None:intergenic |
| TATTTCTCTCAAGAAAAGAT+TGG | 0.446084 | 8_2:-41463600 | Msa1248040:CDS |
| TCAGATGTGAATAAATTTAA+GGG | 0.450365 | 8_2:+41465496 | None:intergenic |
| TAAGAAGTGGCATAGGGATA+AGG | 0.454320 | 8_2:+41465372 | None:intergenic |
| CTGGTTTGGTTCCACATCTG+AGG | 0.458218 | 8_2:+41463460 | None:intergenic |
| GGTTTCCATCAGTGTTCTGT+AGG | 0.464695 | 8_2:+41463486 | None:intergenic |
| TTTGTGAGAGTGAGGGACAT+AGG | 0.466108 | 8_2:+41465460 | None:intergenic |
| AAACAGCTAGAAAAGGACTA+TGG | 0.477186 | 8_2:-41464308 | Msa1248040:CDS |
| ATACCTAAAGTTGAAGATGT+TGG | 0.484817 | 8_2:-41463377 | Msa1248040:CDS |
| AATGAATCACCTTGACAAGA+AGG | 0.485040 | 8_2:+41465171 | None:intergenic |
| AACCATATAGCCACTTGTCT+TGG | 0.489367 | 8_2:+41464359 | None:intergenic |
| ATAGAAAACAAGCTTGAACC+TGG | 0.511077 | 8_2:-41464419 | Msa1248040:CDS |
| ATTCAATTAAGAAGTGGCAT+AGG | 0.511466 | 8_2:+41465365 | None:intergenic |
| CAAAACAAAACAGCTAGAAA+AGG | 0.514734 | 8_2:-41464315 | Msa1248040:CDS |
| TGCACCAACCAGGTAAGAAA+AGG | 0.516937 | 8_2:-41464487 | Msa1248040:CDS |
| AGCTCAAAACCTTCTTGTCA+AGG | 0.547348 | 8_2:-41465180 | Msa1248040:intron |
| TTCAATTAAGAAGTGGCATA+GGG | 0.547972 | 8_2:+41465366 | None:intergenic |
| AAATTAATGGCTAGAGCAGA+AGG | 0.553608 | 8_2:+41465412 | None:intergenic |
| GCTGTGAAATGATATCATCA+AGG | 0.557731 | 8_2:+41463537 | None:intergenic |
| AAACAACAAATTAAAAGAAG+AGG | 0.565427 | 8_2:-41464228 | Msa1248040:intron |
| GTTGTGAATGTTGGTGACAT+GGG | 0.567777 | 8_2:-41464593 | Msa1248040:CDS |
| CTGTGAAATGATATCATCAA+GGG | 0.573406 | 8_2:+41463538 | None:intergenic |
| TGAATAAATTTAAGGGCAGA+GGG | 0.584848 | 8_2:+41465503 | None:intergenic |
| CAGCATAAAAGTGATGTGGT+TGG | 0.585373 | 8_2:-41463518 | Msa1248040:CDS |
| TGTTGTGAATGTTGGTGACA+TGG | 0.586351 | 8_2:-41464594 | Msa1248040:CDS |
| GAGTGCCTACAGAACACTGA+TGG | 0.587909 | 8_2:-41463491 | Msa1248040:CDS |
| AAAACAAGCTTGAACCTGGA+AGG | 0.588635 | 8_2:-41464415 | Msa1248040:CDS |
| GGTCATATTCAATTAAGAAG+TGG | 0.593552 | 8_2:+41465359 | None:intergenic |
| TAGCTTGCAGCCAAGACAAG+TGG | 0.597298 | 8_2:-41464369 | Msa1248040:CDS |
| AAGGAAAGTTCAACTTGCAA+AGG | 0.607696 | 8_2:-41464396 | Msa1248040:CDS |
| GAGGTGAGCCTGCACCAACC+AGG | 0.609845 | 8_2:-41464497 | Msa1248040:CDS |
| GGCTAGAGCAGAAGGTAGTG+AGG | 0.611810 | 8_2:+41465420 | None:intergenic |
| TTCACAGCATAAAAGTGATG+TGG | 0.612587 | 8_2:-41463522 | Msa1248040:CDS |
| ACCAACCAGGTAAGAAAAGG+AGG | 0.623127 | 8_2:-41464484 | Msa1248040:CDS |
| TGGAAACCAATCCTCAGATG+TGG | 0.628207 | 8_2:-41463471 | Msa1248040:CDS |
| ATGTGGAATTTGTGAGAGTG+AGG | 0.645792 | 8_2:+41465452 | None:intergenic |
| TAGTGAGGAATAATGCAATG+TGG | 0.648041 | 8_2:+41465435 | None:intergenic |
| AAGCTACAACAACTTTCATG+TGG | 0.654154 | 8_2:+41463341 | None:intergenic |
| TGATGATGATGAGAACTATG+AGG | 0.658523 | 8_2:-41464516 | Msa1248040:CDS |
| AAGGGCAGAGGGTAGTCATG+TGG | 0.677249 | 8_2:+41465514 | None:intergenic |
| TGTGGAATTTGTGAGAGTGA+GGG | 0.704329 | 8_2:+41465453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTTGATAAAAAATTAA+TGG | + | chr8_2:41463415-41463434 | None:intergenic | 10.0% |
| !! | TTTGTTTGATAAAAAATTAA+TGG | + | chr8_2:41463415-41463434 | None:intergenic | 10.0% |
| !! | TCAGATGTGAATAAATTTAA+GGG | + | chr8_2:41463318-41463337 | None:intergenic | 20.0% |
| !! | GATAATAAACTTAGCTTAAA+GGG | + | chr8_2:41463476-41463495 | None:intergenic | 20.0% |
| !! | TGATAATAAACTTAGCTTAA+AGG | + | chr8_2:41463477-41463496 | None:intergenic | 20.0% |
| !! | TATTGTGATTCTTTAATTGA+CGG | + | chr8_2:41463954-41463973 | None:intergenic | 20.0% |
| !!! | AACATCATCTTTTAAAACAA+AGG | + | chr8_2:41464096-41464115 | None:intergenic | 20.0% |
| !!! | ATTCAATCTTGATTTTTCAT+CGG | + | chr8_2:41464121-41464140 | None:intergenic | 20.0% |
| !!! | AAGTTACATTTTTTTAAGCT+TGG | - | chr8_2:41464169-41464188 | Msa1248040:intron | 20.0% |
| !! | AAACAACAAATTAAAAGAAG+AGG | - | chr8_2:41464583-41464602 | Msa1248040:CDS | 20.0% |
| !!! | CAAGCTTAATCTATTTTTAT+CGG | - | chr8_2:41464924-41464943 | Msa1248040:intron | 20.0% |
| !!! | ATATAATTTTATCCCACTAA+TGG | - | chr8_2:41465152-41465171 | Msa1248040:intron | 20.0% |
| !!! | TATTTTCCTCTTTTTTTCTT+GGG | + | chr8_2:41465238-41465257 | None:intergenic | 20.0% |
| !!! | TTATTTTCCTCTTTTTTTCT+TGG | + | chr8_2:41465239-41465258 | None:intergenic | 20.0% |
| !! | AAAAAGTTTGATCTTCAAAA+GGG | + | chr8_2:41465502-41465521 | None:intergenic | 20.0% |
| !! | TCAGATGTGAATAAATTTAA+GGG | + | chr8_2:41463318-41463337 | None:intergenic | 20.0% |
| !! | GATAATAAACTTAGCTTAAA+GGG | + | chr8_2:41463476-41463495 | None:intergenic | 20.0% |
| !! | TGATAATAAACTTAGCTTAA+AGG | + | chr8_2:41463477-41463496 | None:intergenic | 20.0% |
| !! | TATTGTGATTCTTTAATTGA+CGG | + | chr8_2:41463954-41463973 | None:intergenic | 20.0% |
| !!! | AACATCATCTTTTAAAACAA+AGG | + | chr8_2:41464096-41464115 | None:intergenic | 20.0% |
| !!! | ATTCAATCTTGATTTTTCAT+CGG | + | chr8_2:41464121-41464140 | None:intergenic | 20.0% |
| !!! | AAGTTACATTTTTTTAAGCT+TGG | - | chr8_2:41464169-41464188 | Msa1248040:intron | 20.0% |
| !! | AAACAACAAATTAAAAGAAG+AGG | - | chr8_2:41464583-41464602 | Msa1248040:CDS | 20.0% |
| !!! | CAAGCTTAATCTATTTTTAT+CGG | - | chr8_2:41464924-41464943 | Msa1248040:intron | 20.0% |
| !!! | ATATAATTTTATCCCACTAA+TGG | - | chr8_2:41465152-41465171 | Msa1248040:intron | 20.0% |
| !!! | TATTTTCCTCTTTTTTTCTT+GGG | + | chr8_2:41465238-41465257 | None:intergenic | 20.0% |
| !!! | TTATTTTCCTCTTTTTTTCT+TGG | + | chr8_2:41465239-41465258 | None:intergenic | 20.0% |
| !! | AAAAAGTTTGATCTTCAAAA+GGG | + | chr8_2:41465502-41465521 | None:intergenic | 20.0% |
| ! | GTCAGATGTGAATAAATTTA+AGG | + | chr8_2:41463319-41463338 | None:intergenic | 25.0% |
| !!! | TAGTAGCATAAATTTTGATC+AGG | - | chr8_2:41463501-41463520 | Msa1248040:CDS | 25.0% |
| !! | TTGACAAAAGCTACATTTTA+GGG | + | chr8_2:41463896-41463915 | None:intergenic | 25.0% |
| !! | TTTGACAAAAGCTACATTTT+AGG | + | chr8_2:41463897-41463916 | None:intergenic | 25.0% |
| !! | AGCTTTTGTCAAAATTAAAG+TGG | - | chr8_2:41463904-41463923 | Msa1248040:intron | 25.0% |
| ! | TGTTTCCATTATAAATTTCC+CGG | - | chr8_2:41464035-41464054 | Msa1248040:intron | 25.0% |
| !!! | ATTTTTTTAAGCTTGGATTC+AGG | - | chr8_2:41464176-41464195 | Msa1248040:intron | 25.0% |
| ! | TTTCAAGAAAATGAACTTGT+TGG | + | chr8_2:41464361-41464380 | None:intergenic | 25.0% |
| !! | AACAAGTTCATTTTCTTGAA+AGG | - | chr8_2:41464360-41464379 | Msa1248040:CDS | 25.0% |
| !!! | ATCTATTTTTATCGGTCATT+TGG | - | chr8_2:41464932-41464951 | Msa1248040:intron | 25.0% |
| !! | TGTTAATGTTGATAAGTTCT+TGG | + | chr8_2:41465067-41465086 | None:intergenic | 25.0% |
| ! | ATTAATCACTTACCATTAGT+GGG | + | chr8_2:41465167-41465186 | None:intergenic | 25.0% |
| ! | AATTAATCACTTACCATTAG+TGG | + | chr8_2:41465168-41465187 | None:intergenic | 25.0% |
| ! | GAAATAACCTGTAATAAGAA+AGG | + | chr8_2:41465197-41465216 | None:intergenic | 25.0% |
| ! | TATTTCTCTCAAGAAAAGAT+TGG | - | chr8_2:41465211-41465230 | Msa1248040:CDS | 25.0% |
| ! | CAAAAAGTTTGATCTTCAAA+AGG | + | chr8_2:41465503-41465522 | None:intergenic | 25.0% |
| !! | AAGATCAAACTTTTTGCTTT+TGG | - | chr8_2:41465507-41465526 | Msa1248040:five_prime_UTR | 25.0% |
| ! | GTCAGATGTGAATAAATTTA+AGG | + | chr8_2:41463319-41463338 | None:intergenic | 25.0% |
| !!! | TAGTAGCATAAATTTTGATC+AGG | - | chr8_2:41463501-41463520 | Msa1248040:CDS | 25.0% |
| !! | TTGACAAAAGCTACATTTTA+GGG | + | chr8_2:41463896-41463915 | None:intergenic | 25.0% |
| !! | TTTGACAAAAGCTACATTTT+AGG | + | chr8_2:41463897-41463916 | None:intergenic | 25.0% |
| !! | AGCTTTTGTCAAAATTAAAG+TGG | - | chr8_2:41463904-41463923 | Msa1248040:intron | 25.0% |
| ! | TGTTTCCATTATAAATTTCC+CGG | - | chr8_2:41464035-41464054 | Msa1248040:intron | 25.0% |
| !!! | ATTTTTTTAAGCTTGGATTC+AGG | - | chr8_2:41464176-41464195 | Msa1248040:intron | 25.0% |
| ! | TTTCAAGAAAATGAACTTGT+TGG | + | chr8_2:41464361-41464380 | None:intergenic | 25.0% |
| !! | AACAAGTTCATTTTCTTGAA+AGG | - | chr8_2:41464360-41464379 | Msa1248040:CDS | 25.0% |
| !!! | ATCTATTTTTATCGGTCATT+TGG | - | chr8_2:41464932-41464951 | Msa1248040:intron | 25.0% |
| !! | TGTTAATGTTGATAAGTTCT+TGG | + | chr8_2:41465067-41465086 | None:intergenic | 25.0% |
| ! | ATTAATCACTTACCATTAGT+GGG | + | chr8_2:41465167-41465186 | None:intergenic | 25.0% |
| ! | AATTAATCACTTACCATTAG+TGG | + | chr8_2:41465168-41465187 | None:intergenic | 25.0% |
| ! | GAAATAACCTGTAATAAGAA+AGG | + | chr8_2:41465197-41465216 | None:intergenic | 25.0% |
| ! | TATTTCTCTCAAGAAAAGAT+TGG | - | chr8_2:41465211-41465230 | Msa1248040:CDS | 25.0% |
| ! | CAAAAAGTTTGATCTTCAAA+AGG | + | chr8_2:41465503-41465522 | None:intergenic | 25.0% |
| !! | AAGATCAAACTTTTTGCTTT+TGG | - | chr8_2:41465507-41465526 | Msa1248040:five_prime_UTR | 25.0% |
| TGAATAAATTTAAGGGCAGA+GGG | + | chr8_2:41463311-41463330 | None:intergenic | 30.0% | |
| TTCAATTAAGAAGTGGCATA+GGG | + | chr8_2:41463448-41463467 | None:intergenic | 30.0% | |
| ATTCAATTAAGAAGTGGCAT+AGG | + | chr8_2:41463449-41463468 | None:intergenic | 30.0% | |
| GGTCATATTCAATTAAGAAG+TGG | + | chr8_2:41463455-41463474 | None:intergenic | 30.0% | |
| !! | CATAAATTTTGATCAGGCTA+TGG | - | chr8_2:41463507-41463526 | Msa1248040:CDS | 30.0% |
| ! | TGCAGATGAAGTTTTCTTTT+TGG | - | chr8_2:41463752-41463771 | Msa1248040:intron | 30.0% |
| AAACAGAAGTTGGATTCTTA+TGG | - | chr8_2:41463779-41463798 | Msa1248040:intron | 30.0% | |
| ! | TTAGTGCATGTTTGAAATCA+GGG | - | chr8_2:41463849-41463868 | Msa1248040:intron | 30.0% |
| CAAAACAAAACAGCTAGAAA+AGG | - | chr8_2:41464496-41464515 | Msa1248040:CDS | 30.0% | |
| AGTGCTATATATATGCTTGA+TGG | + | chr8_2:41464659-41464678 | None:intergenic | 30.0% | |
| ! | CAGATTTTACATTTTGCACA+GGG | + | chr8_2:41465030-41465049 | None:intergenic | 30.0% |
| ! | ACAGATTTTACATTTTGCAC+AGG | + | chr8_2:41465031-41465050 | None:intergenic | 30.0% |
| TTTGCTACCTTTCTTATTAC+AGG | - | chr8_2:41465187-41465206 | Msa1248040:CDS | 30.0% | |
| CTGTGAAATGATATCATCAA+GGG | + | chr8_2:41465276-41465295 | None:intergenic | 30.0% | |
| ! | ATGGAACATTCAAGATGTTT+TGG | + | chr8_2:41465412-41465431 | None:intergenic | 30.0% |
| TCTTCAACTTTAGGTATGAA+TGG | + | chr8_2:41465431-41465450 | None:intergenic | 30.0% | |
| ATACCTAAAGTTGAAGATGT+TGG | - | chr8_2:41465434-41465453 | Msa1248040:five_prime_UTR | 30.0% | |
| TGAATAAATTTAAGGGCAGA+GGG | + | chr8_2:41463311-41463330 | None:intergenic | 30.0% | |
| TTCAATTAAGAAGTGGCATA+GGG | + | chr8_2:41463448-41463467 | None:intergenic | 30.0% | |
| ATTCAATTAAGAAGTGGCAT+AGG | + | chr8_2:41463449-41463468 | None:intergenic | 30.0% | |
| GGTCATATTCAATTAAGAAG+TGG | + | chr8_2:41463455-41463474 | None:intergenic | 30.0% | |
| !! | CATAAATTTTGATCAGGCTA+TGG | - | chr8_2:41463507-41463526 | Msa1248040:CDS | 30.0% |
| ! | TGCAGATGAAGTTTTCTTTT+TGG | - | chr8_2:41463752-41463771 | Msa1248040:intron | 30.0% |
| AAACAGAAGTTGGATTCTTA+TGG | - | chr8_2:41463779-41463798 | Msa1248040:intron | 30.0% | |
| ! | TTAGTGCATGTTTGAAATCA+GGG | - | chr8_2:41463849-41463868 | Msa1248040:intron | 30.0% |
| CAAAACAAAACAGCTAGAAA+AGG | - | chr8_2:41464496-41464515 | Msa1248040:CDS | 30.0% | |
| AGTGCTATATATATGCTTGA+TGG | + | chr8_2:41464659-41464678 | None:intergenic | 30.0% | |
| ! | CAGATTTTACATTTTGCACA+GGG | + | chr8_2:41465030-41465049 | None:intergenic | 30.0% |
| ! | ACAGATTTTACATTTTGCAC+AGG | + | chr8_2:41465031-41465050 | None:intergenic | 30.0% |
| TTTGCTACCTTTCTTATTAC+AGG | - | chr8_2:41465187-41465206 | Msa1248040:CDS | 30.0% | |
| CTGTGAAATGATATCATCAA+GGG | + | chr8_2:41465276-41465295 | None:intergenic | 30.0% | |
| ! | ATGGAACATTCAAGATGTTT+TGG | + | chr8_2:41465412-41465431 | None:intergenic | 30.0% |
| TCTTCAACTTTAGGTATGAA+TGG | + | chr8_2:41465431-41465450 | None:intergenic | 30.0% | |
| ATACCTAAAGTTGAAGATGT+TGG | - | chr8_2:41465434-41465453 | Msa1248040:five_prime_UTR | 30.0% | |
| GTGAATAAATTTAAGGGCAG+AGG | + | chr8_2:41463312-41463331 | None:intergenic | 35.0% | |
| TAGTGAGGAATAATGCAATG+TGG | + | chr8_2:41463379-41463398 | None:intergenic | 35.0% | |
| AAATTAATGGCTAGAGCAGA+AGG | + | chr8_2:41463402-41463421 | None:intergenic | 35.0% | |
| AATGAATCACCTTGACAAGA+AGG | + | chr8_2:41463643-41463662 | None:intergenic | 35.0% | |
| CAACAATCAAGAAGCTACAA+AGG | + | chr8_2:41463667-41463686 | None:intergenic | 35.0% | |
| ! | TTTTGGTCGAAAACAGAAGT+TGG | - | chr8_2:41463769-41463788 | Msa1248040:intron | 35.0% |
| ! | CTTAGTGCATGTTTGAAATC+AGG | - | chr8_2:41463848-41463867 | Msa1248040:intron | 35.0% |
| GTAGTAAAATGTAGCCGATA+TGG | - | chr8_2:41463986-41464005 | Msa1248040:intron | 35.0% | |
| AAAATGTAGCCGATATGGTT+CGG | - | chr8_2:41463991-41464010 | Msa1248040:intron | 35.0% | |
| AATGTCCTTAATCGCGAATT+GGG | + | chr8_2:41464061-41464080 | None:intergenic | 35.0% | |
| AAATGTCCTTAATCGCGAAT+TGG | + | chr8_2:41464062-41464081 | None:intergenic | 35.0% | |
| CACAACATCAACCATAGAAT+TGG | + | chr8_2:41464204-41464223 | None:intergenic | 35.0% | |
| ! | ATGGTTGATGTTGTGAATGT+TGG | - | chr8_2:41464209-41464228 | Msa1248040:intron | 35.0% |
| ! | TGATGATGATGAGAACTATG+AGG | - | chr8_2:41464295-41464314 | Msa1248040:CDS | 35.0% |
| ATAGAAAACAAGCTTGAACC+TGG | - | chr8_2:41464392-41464411 | Msa1248040:CDS | 35.0% | |
| AAGGAAAGTTCAACTTGCAA+AGG | - | chr8_2:41464415-41464434 | Msa1248040:CDS | 35.0% | |
| TGGCTATATGGTTCCAAAAT+AGG | - | chr8_2:41464462-41464481 | Msa1248040:CDS | 35.0% | |
| ! | TGAATCTTGCTCTCCTATTT+TGG | + | chr8_2:41464478-41464497 | None:intergenic | 35.0% |
| AAACAGCTAGAAAAGGACTA+TGG | - | chr8_2:41464503-41464522 | Msa1248040:CDS | 35.0% | |
| ATTGGTCCCAAGAAAAAAAG+AGG | - | chr8_2:41465229-41465248 | Msa1248040:CDS | 35.0% | |
| GCTGTGAAATGATATCATCA+AGG | + | chr8_2:41465277-41465296 | None:intergenic | 35.0% | |
| TTCACAGCATAAAAGTGATG+TGG | - | chr8_2:41465289-41465308 | Msa1248040:exon | 35.0% | |
| TGTGAAAATTCTGTCTGGTT+TGG | + | chr8_2:41465368-41465387 | None:intergenic | 35.0% | |
| CATCTTGTGAAAATTCTGTC+TGG | + | chr8_2:41465373-41465392 | None:intergenic | 35.0% | |
| !!! | CATTCAAGATGTTTTGGCTT+AGG | + | chr8_2:41465406-41465425 | None:intergenic | 35.0% |
| CATCCAACATCTTCAACTTT+AGG | + | chr8_2:41465440-41465459 | None:intergenic | 35.0% | |
| AAGCTACAACAACTTTCATG+TGG | + | chr8_2:41465473-41465492 | None:intergenic | 35.0% | |
| GTGAATAAATTTAAGGGCAG+AGG | + | chr8_2:41463312-41463331 | None:intergenic | 35.0% | |
| TAGTGAGGAATAATGCAATG+TGG | + | chr8_2:41463379-41463398 | None:intergenic | 35.0% | |
| AAATTAATGGCTAGAGCAGA+AGG | + | chr8_2:41463402-41463421 | None:intergenic | 35.0% | |
| AATGAATCACCTTGACAAGA+AGG | + | chr8_2:41463643-41463662 | None:intergenic | 35.0% | |
| CAACAATCAAGAAGCTACAA+AGG | + | chr8_2:41463667-41463686 | None:intergenic | 35.0% | |
| ! | TTTTGGTCGAAAACAGAAGT+TGG | - | chr8_2:41463769-41463788 | Msa1248040:intron | 35.0% |
| ! | CTTAGTGCATGTTTGAAATC+AGG | - | chr8_2:41463848-41463867 | Msa1248040:intron | 35.0% |
| GTAGTAAAATGTAGCCGATA+TGG | - | chr8_2:41463986-41464005 | Msa1248040:intron | 35.0% | |
| AAAATGTAGCCGATATGGTT+CGG | - | chr8_2:41463991-41464010 | Msa1248040:intron | 35.0% | |
| AATGTCCTTAATCGCGAATT+GGG | + | chr8_2:41464061-41464080 | None:intergenic | 35.0% | |
| AAATGTCCTTAATCGCGAAT+TGG | + | chr8_2:41464062-41464081 | None:intergenic | 35.0% | |
| CACAACATCAACCATAGAAT+TGG | + | chr8_2:41464204-41464223 | None:intergenic | 35.0% | |
| ! | ATGGTTGATGTTGTGAATGT+TGG | - | chr8_2:41464209-41464228 | Msa1248040:intron | 35.0% |
| ! | TGATGATGATGAGAACTATG+AGG | - | chr8_2:41464295-41464314 | Msa1248040:CDS | 35.0% |
| ATAGAAAACAAGCTTGAACC+TGG | - | chr8_2:41464392-41464411 | Msa1248040:CDS | 35.0% | |
| AAGGAAAGTTCAACTTGCAA+AGG | - | chr8_2:41464415-41464434 | Msa1248040:CDS | 35.0% | |
| TGGCTATATGGTTCCAAAAT+AGG | - | chr8_2:41464462-41464481 | Msa1248040:CDS | 35.0% | |
| ! | TGAATCTTGCTCTCCTATTT+TGG | + | chr8_2:41464478-41464497 | None:intergenic | 35.0% |
| AAACAGCTAGAAAAGGACTA+TGG | - | chr8_2:41464503-41464522 | Msa1248040:CDS | 35.0% | |
| ATTGGTCCCAAGAAAAAAAG+AGG | - | chr8_2:41465229-41465248 | Msa1248040:CDS | 35.0% | |
| GCTGTGAAATGATATCATCA+AGG | + | chr8_2:41465277-41465296 | None:intergenic | 35.0% | |
| TTCACAGCATAAAAGTGATG+TGG | - | chr8_2:41465289-41465308 | Msa1248040:exon | 35.0% | |
| TGTGAAAATTCTGTCTGGTT+TGG | + | chr8_2:41465368-41465387 | None:intergenic | 35.0% | |
| CATCTTGTGAAAATTCTGTC+TGG | + | chr8_2:41465373-41465392 | None:intergenic | 35.0% | |
| !!! | CATTCAAGATGTTTTGGCTT+AGG | + | chr8_2:41465406-41465425 | None:intergenic | 35.0% |
| CATCCAACATCTTCAACTTT+AGG | + | chr8_2:41465440-41465459 | None:intergenic | 35.0% | |
| AAGCTACAACAACTTTCATG+TGG | + | chr8_2:41465473-41465492 | None:intergenic | 35.0% | |
| TGTGGAATTTGTGAGAGTGA+GGG | + | chr8_2:41463361-41463380 | None:intergenic | 40.0% | |
| ATGTGGAATTTGTGAGAGTG+AGG | + | chr8_2:41463362-41463381 | None:intergenic | 40.0% | |
| TAAGAAGTGGCATAGGGATA+AGG | + | chr8_2:41463442-41463461 | None:intergenic | 40.0% | |
| AGCTCAAAACCTTCTTGTCA+AGG | - | chr8_2:41463631-41463650 | Msa1248040:intron | 40.0% | |
| AATCGTTGACCGAACCATAT+CGG | + | chr8_2:41464003-41464022 | None:intergenic | 40.0% | |
| TTGGGCCGGGAAATTTATAA+TGG | + | chr8_2:41464043-41464062 | None:intergenic | 40.0% | |
| ! | GGATTCAGGTTCCAATTCTA+TGG | - | chr8_2:41464190-41464209 | Msa1248040:intron | 40.0% |
| !! | TGTTGTGAATGTTGGTGACA+TGG | - | chr8_2:41464217-41464236 | Msa1248040:intron | 40.0% |
| !! | GTTGTGAATGTTGGTGACAT+GGG | - | chr8_2:41464218-41464237 | Msa1248040:intron | 40.0% |
| AAAACAAGCTTGAACCTGGA+AGG | - | chr8_2:41464396-41464415 | Msa1248040:CDS | 40.0% | |
| AACCATATAGCCACTTGTCT+TGG | + | chr8_2:41464455-41464474 | None:intergenic | 40.0% | |
| CAGCATAAAAGTGATGTGGT+TGG | - | chr8_2:41465293-41465312 | Msa1248040:exon | 40.0% | |
| TGTGGAATTTGTGAGAGTGA+GGG | + | chr8_2:41463361-41463380 | None:intergenic | 40.0% | |
| ATGTGGAATTTGTGAGAGTG+AGG | + | chr8_2:41463362-41463381 | None:intergenic | 40.0% | |
| TAAGAAGTGGCATAGGGATA+AGG | + | chr8_2:41463442-41463461 | None:intergenic | 40.0% | |
| AGCTCAAAACCTTCTTGTCA+AGG | - | chr8_2:41463631-41463650 | Msa1248040:intron | 40.0% | |
| AATCGTTGACCGAACCATAT+CGG | + | chr8_2:41464003-41464022 | None:intergenic | 40.0% | |
| TTGGGCCGGGAAATTTATAA+TGG | + | chr8_2:41464043-41464062 | None:intergenic | 40.0% | |
| ! | GGATTCAGGTTCCAATTCTA+TGG | - | chr8_2:41464190-41464209 | Msa1248040:intron | 40.0% |
| !! | TGTTGTGAATGTTGGTGACA+TGG | - | chr8_2:41464217-41464236 | Msa1248040:intron | 40.0% |
| !! | GTTGTGAATGTTGGTGACAT+GGG | - | chr8_2:41464218-41464237 | Msa1248040:intron | 40.0% |
| AAAACAAGCTTGAACCTGGA+AGG | - | chr8_2:41464396-41464415 | Msa1248040:CDS | 40.0% | |
| AACCATATAGCCACTTGTCT+TGG | + | chr8_2:41464455-41464474 | None:intergenic | 40.0% | |
| CAGCATAAAAGTGATGTGGT+TGG | - | chr8_2:41465293-41465312 | Msa1248040:exon | 40.0% | |
| TTTGTGAGAGTGAGGGACAT+AGG | + | chr8_2:41463354-41463373 | None:intergenic | 45.0% | |
| ! | GTGCATGTTTGAAATCAGGG+TGG | - | chr8_2:41463852-41463871 | Msa1248040:intron | 45.0% |
| !! | TTTTCTTACCTGGTTGGTGC+AGG | + | chr8_2:41464325-41464344 | None:intergenic | 45.0% |
| TGCACCAACCAGGTAAGAAA+AGG | - | chr8_2:41464324-41464343 | Msa1248040:CDS | 45.0% | |
| ACCAACCAGGTAAGAAAAGG+AGG | - | chr8_2:41464327-41464346 | Msa1248040:CDS | 45.0% | |
| ! | GCAAGTTGAACTTTCCTTCC+AGG | + | chr8_2:41464413-41464432 | None:intergenic | 45.0% |
| AGCCAAGACAAGTGGCTATA+TGG | - | chr8_2:41464450-41464469 | Msa1248040:CDS | 45.0% | |
| GGTTTCCATCAGTGTTCTGT+AGG | + | chr8_2:41465328-41465347 | None:intergenic | 45.0% | |
| TGGAAACCAATCCTCAGATG+TGG | - | chr8_2:41465340-41465359 | Msa1248040:five_prime_UTR | 45.0% | |
| TTGGTTCCACATCTGAGGAT+TGG | + | chr8_2:41465349-41465368 | None:intergenic | 45.0% | |
| TTTGTGAGAGTGAGGGACAT+AGG | + | chr8_2:41463354-41463373 | None:intergenic | 45.0% | |
| ! | GTGCATGTTTGAAATCAGGG+TGG | - | chr8_2:41463852-41463871 | Msa1248040:intron | 45.0% |
| !! | TTTTCTTACCTGGTTGGTGC+AGG | + | chr8_2:41464325-41464344 | None:intergenic | 45.0% |
| TGCACCAACCAGGTAAGAAA+AGG | - | chr8_2:41464324-41464343 | Msa1248040:CDS | 45.0% | |
| ACCAACCAGGTAAGAAAAGG+AGG | - | chr8_2:41464327-41464346 | Msa1248040:CDS | 45.0% | |
| ! | GCAAGTTGAACTTTCCTTCC+AGG | + | chr8_2:41464413-41464432 | None:intergenic | 45.0% |
| AGCCAAGACAAGTGGCTATA+TGG | - | chr8_2:41464450-41464469 | Msa1248040:CDS | 45.0% | |
| GGTTTCCATCAGTGTTCTGT+AGG | + | chr8_2:41465328-41465347 | None:intergenic | 45.0% | |
| TGGAAACCAATCCTCAGATG+TGG | - | chr8_2:41465340-41465359 | Msa1248040:five_prime_UTR | 45.0% | |
| TTGGTTCCACATCTGAGGAT+TGG | + | chr8_2:41465349-41465368 | None:intergenic | 45.0% | |
| TGAGCTCGTCAACTCTCTCT+TGG | - | chr8_2:41463597-41463616 | Msa1248040:CDS | 50.0% | |
| TCCTTAATCGCGAATTGGGC+CGG | + | chr8_2:41464057-41464076 | None:intergenic | 50.0% | |
| ! | GCCTCCTTTTCTTACCTGGT+TGG | + | chr8_2:41464331-41464350 | None:intergenic | 50.0% |
| ! | GTGAGCCTCCTTTTCTTACC+TGG | + | chr8_2:41464335-41464354 | None:intergenic | 50.0% |
| ! | TAGCTTGCAGCCAAGACAAG+TGG | - | chr8_2:41464442-41464461 | Msa1248040:CDS | 50.0% |
| GTCAGTGCCAATGTCATGTC+TGG | - | chr8_2:41464768-41464787 | Msa1248040:intron | 50.0% | |
| ACGAGCACCAGACATGACAT+TGG | + | chr8_2:41464778-41464797 | None:intergenic | 50.0% | |
| GAGTGCCTACAGAACACTGA+TGG | - | chr8_2:41465320-41465339 | Msa1248040:five_prime_UTR | 50.0% | |
| !! | CTGGTTTGGTTCCACATCTG+AGG | + | chr8_2:41465354-41465373 | None:intergenic | 50.0% |
| TGAGCTCGTCAACTCTCTCT+TGG | - | chr8_2:41463597-41463616 | Msa1248040:CDS | 50.0% | |
| TCCTTAATCGCGAATTGGGC+CGG | + | chr8_2:41464057-41464076 | None:intergenic | 50.0% | |
| ! | GCCTCCTTTTCTTACCTGGT+TGG | + | chr8_2:41464331-41464350 | None:intergenic | 50.0% |
| ! | GTGAGCCTCCTTTTCTTACC+TGG | + | chr8_2:41464335-41464354 | None:intergenic | 50.0% |
| ! | TAGCTTGCAGCCAAGACAAG+TGG | - | chr8_2:41464442-41464461 | Msa1248040:CDS | 50.0% |
| GTCAGTGCCAATGTCATGTC+TGG | - | chr8_2:41464768-41464787 | Msa1248040:intron | 50.0% | |
| ACGAGCACCAGACATGACAT+TGG | + | chr8_2:41464778-41464797 | None:intergenic | 50.0% | |
| GAGTGCCTACAGAACACTGA+TGG | - | chr8_2:41465320-41465339 | Msa1248040:five_prime_UTR | 50.0% | |
| !! | CTGGTTTGGTTCCACATCTG+AGG | + | chr8_2:41465354-41465373 | None:intergenic | 50.0% |
| AAGGGCAGAGGGTAGTCATG+TGG | + | chr8_2:41463300-41463319 | None:intergenic | 55.0% | |
| GGCTAGAGCAGAAGGTAGTG+AGG | + | chr8_2:41463394-41463413 | None:intergenic | 55.0% | |
| CCTTAATCGCGAATTGGGCC+GGG | + | chr8_2:41464056-41464075 | None:intergenic | 55.0% | |
| AAGGGCAGAGGGTAGTCATG+TGG | + | chr8_2:41463300-41463319 | None:intergenic | 55.0% | |
| GGCTAGAGCAGAAGGTAGTG+AGG | + | chr8_2:41463394-41463413 | None:intergenic | 55.0% | |
| CCTTAATCGCGAATTGGGCC+GGG | + | chr8_2:41464056-41464075 | None:intergenic | 55.0% | |
| CCCGGCCCAATTCGCGATTA+AGG | - | chr8_2:41464053-41464072 | Msa1248040:intron | 60.0% | |
| CCCGGCCCAATTCGCGATTA+AGG | - | chr8_2:41464053-41464072 | Msa1248040:intron | 60.0% | |
| GAGGTGAGCCTGCACCAACC+AGG | - | chr8_2:41464314-41464333 | Msa1248040:CDS | 65.0% | |
| GAGGTGAGCCTGCACCAACC+AGG | - | chr8_2:41464314-41464333 | Msa1248040:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 41463295 | 41465538 | 41463295 | ID=Msa1248040;Name=Msa1248040 |
| chr8_2 | mRNA | 41463295 | 41465538 | 41463295 | ID=Msa1248040-mRNA-1;Parent=Msa1248040;Name=Msa1248040-mRNA-1;_AED=0.01;_eAED=0.01;_QI=231|1|0.66|1|1|1|3|0|287 |
| chr8_2 | exon | 41463295 | 41463624 | 41463295 | ID=Msa1248040-mRNA-1:exon:12620;Parent=Msa1248040-mRNA-1 |
| chr8_2 | exon | 41464229 | 41464635 | 41464229 | ID=Msa1248040-mRNA-1:exon:12619;Parent=Msa1248040-mRNA-1 |
| chr8_2 | exon | 41465181 | 41465538 | 41465181 | ID=Msa1248040-mRNA-1:exon:12618;Parent=Msa1248040-mRNA-1 |
| chr8_2 | five_prime_UTR | 41465308 | 41465538 | 41465308 | ID=Msa1248040-mRNA-1:five_prime_utr;Parent=Msa1248040-mRNA-1 |
| chr8_2 | CDS | 41465181 | 41465307 | 41465181 | ID=Msa1248040-mRNA-1:cds;Parent=Msa1248040-mRNA-1 |
| chr8_2 | CDS | 41464229 | 41464635 | 41464229 | ID=Msa1248040-mRNA-1:cds;Parent=Msa1248040-mRNA-1 |
| chr8_2 | CDS | 41463295 | 41463624 | 41463295 | ID=Msa1248040-mRNA-1:cds;Parent=Msa1248040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
