AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0312670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312670 MtrunA17_Chr2g0282041 88.660 582 13 6 1 539 1 572 0.0 994
Msa0312670 MtrunA17_Chr4g0047751 86.434 516 52 6 28 539 78 579 0.0 814
Msa0312670 MtrunA17_Chr2g0313531 57.576 165 29 3 1 124 1 165 5.73e-44 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0312670 AT4G21660.1 78.805 519 90 7 15 526 67 572 0.0 756
Msa0312670 AT4G21660.2 76.735 533 90 8 15 526 67 586 0.0 747
Msa0312670 AT4G21660.3 80.161 373 59 4 156 526 307 666 0.0 567
Msa0312670 AT4G21660.3 75.168 149 32 3 15 158 67 215 5.73e-56 199
Msa0312670 AT1G11520.1 62.400 125 33 4 379 502 85 196 1.18e-37 137

Find 148 sgRNAs with CRISPR-Local

Find 542 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAGGTCGATTTGCTTAA+AGG 0.211596 2_4:-7844589 Msa0312670:intron
AGGATAAATCGGGTGCTAAA+AGG 0.234213 2_4:-7844707 Msa0312670:CDS
CGCCTTCACATCAAGGAAAT+TGG 0.256686 2_4:+7851516 None:intergenic
ATAGTAGCTATAACTGTTTC+GGG 0.291281 2_4:-7844080 Msa0312670:three_prime_UTR
GACTAAACACTGGGGTGATT+TGG 0.294704 2_4:-7845985 Msa0312670:CDS
TGATTTGGAGGAGGAGGAGG+AGG 0.308929 2_4:-7845970 Msa0312670:CDS
AATAGTAGCTATAACTGTTT+CGG 0.313588 2_4:-7844081 Msa0312670:three_prime_UTR
GGGTGATTTGGAGGAGGAGG+AGG 0.331062 2_4:-7845973 Msa0312670:CDS
TCTCCGCAACGACTCCGTTT+TGG 0.339722 2_4:+7851375 None:intergenic
CACTGGCACCCAGGATAAAT+CGG 0.339913 2_4:-7844718 Msa0312670:CDS
ATGTCAGCTTTGGCTTTGTT+TGG 0.352303 2_4:+7847945 None:intergenic
CGTATCAAACAAGAAGAAAA+AGG 0.355646 2_4:-7850598 Msa0312670:intron
TCCATGGCTTCCAACTCTTC+CGG 0.371328 2_4:+7844532 None:intergenic
AAAGCTAGCTCCAGCGGGTA+TGG 0.384929 2_4:+7846719 None:intergenic
TCCCCAAGGGATGTCAGCTT+TGG 0.394039 2_4:+7847935 None:intergenic
TTGGTTATCATCCTGGTGGA+TGG 0.399555 2_4:-7846698 Msa0312670:CDS
TTAAAGCAAACCTCATAGTT+AGG 0.402212 2_4:+7846520 None:intergenic
AAAATTTACATACGTGTGTC+CGG 0.405526 2_4:+7844849 None:intergenic
AGAAGAATTGGAACCTGCTT+CGG 0.407610 2_4:+7851344 None:intergenic
TGCAGCAGATCCCAAGTTGC+TGG 0.410107 2_4:-7850297 Msa0312670:CDS
ACGGAAGCAACAGAGAAATA+AGG 0.414634 2_4:-7845036 Msa0312670:CDS
TGGTTATCATCCTGGTGGAT+GGG 0.416487 2_4:-7846697 Msa0312670:CDS
GGAAGAAGAAGAGGAGGAGG+AGG 0.417125 2_4:-7845940 Msa0312670:CDS
AGAGGAAGAAGAAGAGGAGG+AGG 0.423172 2_4:-7845943 Msa0312670:CDS
TTCTCCTCTCTGTAGTTATG+TGG 0.425409 2_4:-7844745 Msa0312670:CDS
CCTGATTTCATTGCTGCCAC+TGG 0.430702 2_4:-7848825 Msa0312670:CDS
GGAGGAGGAAGAAGAAGGAA+TGG 0.431152 2_4:-7845925 Msa0312670:CDS
CCTTCAAAGTCTACCTTCTC+TGG 0.435209 2_4:+7850890 None:intergenic
CTGAGGGTGCTCCTCCTCCA+TGG 0.436159 2_4:-7846891 Msa0312670:CDS
GCTAGCTTTGGTTATCATCC+TGG 0.441107 2_4:-7846705 Msa0312670:CDS
CACTTTACTGCCGGAAGAGT+TGG 0.443843 2_4:-7844542 Msa0312670:CDS
GGATAAATCGGGTGCTAAAA+GGG 0.449282 2_4:-7844706 Msa0312670:intron
AAGCCAAAGCTGACATCCCT+TGG 0.451340 2_4:-7847938 Msa0312670:CDS
TGTAGTTATGTGGTTGGCAC+TGG 0.451870 2_4:-7844735 Msa0312670:CDS
ATACCCGCTGGAGCTAGCTT+TGG 0.455254 2_4:-7846717 Msa0312670:CDS
ACTTGATAAAGAGGCCTCTC+AGG 0.455539 2_4:+7845011 None:intergenic
TATGCAGGTATGAGGAAGCT+AGG 0.456420 2_4:-7844408 Msa0312670:intron
AGCCAAAGCTGACATCCCTT+GGG 0.457408 2_4:-7847937 Msa0312670:CDS
GGTTATCATCCTGGTGGATG+GGG 0.459842 2_4:-7846696 Msa0312670:CDS
CAGTGTTTAGTCTTATCAAC+TGG 0.461610 2_4:+7845996 None:intergenic
CGAGGGTTTAAGAGAAATTG+AGG 0.470800 2_4:+7851424 None:intergenic
CAGTATGGACGCCCACTGTA+TGG 0.471367 2_4:-7846574 Msa0312670:CDS
CCAGTGGCAGCAATGAAATC+AGG 0.472805 2_4:+7848825 None:intergenic
TATTTCTCTGTTGCTTCCGT+AGG 0.476260 2_4:+7845039 None:intergenic
ATACTAGGAAATTGATAAGA+AGG 0.480660 2_4:-7850715 Msa0312670:intron
GAGGAGGAGGAGGAAGAAGA+AGG 0.483462 2_4:-7845930 Msa0312670:CDS
CTCTTCTGTGACCAATGCCT+AGG 0.484962 2_4:+7850239 None:intergenic
AGAAGAGGAAGAAGAAGAGG+AGG 0.486639 2_4:-7845946 Msa0312670:CDS
CCTCTCTGTAGTTATGTGGT+TGG 0.487747 2_4:-7844741 Msa0312670:CDS
GGAAGAAGAGGAAGAAGAAG+AGG 0.488078 2_4:-7845949 Msa0312670:CDS
ATAACTACAGAGAGGAGAAA+AGG 0.488117 2_4:+7844749 None:intergenic
GGAAGAAGAAGGAATGGAAG+AGG 0.491838 2_4:-7845919 Msa0312670:CDS
ATCTTCAGCTGAGGGTAAGA+TGG 0.493392 2_4:+7846759 None:intergenic
CCAGAGAAGGTAGACTTTGA+AGG 0.493845 2_4:-7850890 Msa0312670:CDS
GTATGGGAGCATTCAGTCCT+GGG 0.498463 2_4:+7846736 None:intergenic
TCCATGGCTTATTAATATGC+AGG 0.501939 2_4:-7846875 Msa0312670:intron
AAAAGAAATTCATACTTGGC+AGG 0.504336 2_4:+7844499 None:intergenic
AAGCTAGCTCCAGCGGGTAT+GGG 0.504829 2_4:+7846720 None:intergenic
TGATAAGAAGGATGAGGTGG+AGG 0.505250 2_4:-7850703 Msa0312670:CDS
ATTCCTACCTCAACAACATC+AGG 0.507591 2_4:+7850424 None:intergenic
ATGAAATCAGGAAGTTGAAA+GGG 0.508748 2_4:+7848837 None:intergenic
AGGTCAAAAGTCAGATAAAG+TGG 0.510633 2_4:-7844569 Msa0312670:CDS
GAAGGTAGACTTTGAAGGCA+TGG 0.512645 2_4:-7850885 Msa0312670:CDS
GGTATGGGAGCATTCAGTCC+TGG 0.514292 2_4:+7846735 None:intergenic
AGAAAGTATACTTCGTCGAC+AGG 0.517760 2_4:+7846666 None:intergenic
AAGTCGTGTGATAACATACC+AGG 0.517875 2_4:+7846934 None:intergenic
AGAAGAAGGAATGGAAGAGG+AGG 0.521562 2_4:-7845916 Msa0312670:CDS
CTCCAATTTCCTTGATGTGA+AGG 0.522310 2_4:-7851518 None:intergenic
TAAACCCTCGACGATGGCTG+CGG 0.522545 2_4:-7851411 Msa0312670:exon
TTTAGCACCCGATTTATCCT+GGG 0.522600 2_4:+7844710 None:intergenic
GCCGGAAGAGTTGGAAGCCA+TGG 0.523168 2_4:-7844533 Msa0312670:CDS
TACCCTCAGCTGAAGATCCC+AGG 0.525500 2_4:-7846753 Msa0312670:CDS
TAAACACTGGGGTGATTTGG+AGG 0.529324 2_4:-7845982 Msa0312670:CDS
CATGGAGGAGGAGCACCCTC+AGG 0.530319 2_4:+7846892 None:intergenic
GAAGTTGAAACAAAAGCAAA+GGG 0.533046 2_4:-7848164 Msa0312670:CDS
CTCAAGACCTGATGTTGTTG+AGG 0.536900 2_4:-7850431 Msa0312670:intron
TTCCGTAGGTCAATAACATC+AGG 0.537897 2_4:+7845053 None:intergenic
GCTGGATTTATGCAGGTATG+AGG 0.538780 2_4:-7844416 Msa0312670:intron
ACTGGCACCCAGGATAAATC+GGG 0.540487 2_4:-7844717 Msa0312670:CDS
AATGAAATCAGGAAGTTGAA+AGG 0.540666 2_4:+7848836 None:intergenic
GCAGGCTTATATTGAGAAAG+AGG 0.540854 2_4:-7848194 Msa0312670:intron
TTTCCTTGATGTGAAGGCGG+TGG 0.547457 2_4:-7851512 Msa0312670:five_prime_UTR
AGAAGTTGAAACAAAAGCAA+AGG 0.550383 2_4:-7848165 Msa0312670:CDS
CACGACTTGAAAGAAGCTCT+TGG 0.551012 2_4:-7846919 Msa0312670:CDS
TCACGAAGGAAAAGAATTTG+AGG 0.551560 2_4:-7847906 Msa0312670:intron
GAAGAGGAGGAATTTGAAGA+TGG 0.554526 2_4:-7845903 Msa0312670:CDS
AATCCACCGCCTTCACATCA+AGG 0.556238 2_4:+7851509 None:intergenic
ACAAGATCAGCCTAACTATG+AGG 0.558436 2_4:-7846530 Msa0312670:intron
TAGCTATAACTGTTTCGGGC+AGG 0.559786 2_4:-7844076 Msa0312670:three_prime_UTR
AATTGATAAGAAGGATGAGG+TGG 0.560109 2_4:-7850706 Msa0312670:CDS
GGACGGCAAGTCGAAGAAGA+AGG 0.560843 2_4:-7844196 Msa0312670:CDS
CTGAATGCTCCCATACCCGC+TGG 0.561728 2_4:-7846729 Msa0312670:CDS
CTGGGGTGATTTGGAGGAGG+AGG 0.562341 2_4:-7845976 Msa0312670:CDS
GGAGGCTTGCCCCATCCACC+AGG 0.563012 2_4:+7846687 None:intergenic
GGAAATTGATAAGAAGGATG+AGG 0.563362 2_4:-7850709 Msa0312670:CDS
AGTGGACGTCACTTTACTGC+CGG 0.566733 2_4:-7844551 Msa0312670:CDS
CACCTGATGTTATTGACCTA+CGG 0.568343 2_4:-7845055 Msa0312670:CDS
GTAACACTTCCTTACCAAAA+CGG 0.572606 2_4:-7851389 Msa0312670:CDS
TGGTGTGCAGGTAAAGTTGA+GGG 0.572723 2_4:-7846965 Msa0312670:intron
TGTGACCAATGCCTAGGTAC+AGG 0.573366 2_4:+7850245 None:intergenic
TTACCAAAACGGAGTCGTTG+CGG 0.574219 2_4:-7851378 Msa0312670:CDS
GGAGAATACTGATCCGAAGC+AGG 0.574927 2_4:-7851357 Msa0312670:intron
AGCTGAGGGTAAGATGGTGG+AGG 0.578031 2_4:+7846765 None:intergenic
CTTCGTGATACAACTCCCCA+AGG 0.578300 2_4:+7847921 None:intergenic
GCGAGAAGATTTCAGTGACA+TGG 0.578430 2_4:-7844362 Msa0312670:CDS
CAGGTATGAGGAAGCTAGGG+AGG 0.579280 2_4:-7844404 Msa0312670:CDS
AAATTTACATACGTGTGTCC+GGG 0.587575 2_4:+7844850 None:intergenic
TTCTCTTAAACCCTCGACGA+TGG 0.588795 2_4:-7851417 Msa0312670:exon
ACCTGCATATTAATAAGCCA+TGG 0.590007 2_4:+7846874 None:intergenic
AGTCTGTTGATAGTCTATCA+AGG 0.590579 2_4:-7845875 Msa0312670:intron
TGGTATTGAGAAAATCAGAC+AGG 0.592292 2_4:-7848805 Msa0312670:intron
CTAGGGAGGAAGAGAAGTTG+CGG 0.594810 2_4:-7844390 Msa0312670:CDS
ATTTAGTTTCACTGCTTCAG+AGG 0.596518 2_4:-7850834 Msa0312670:intron
AGCTTTGGTTATCATCCTGG+TGG 0.598182 2_4:-7846702 Msa0312670:CDS
TAACCAAAGCTAGCTCCAGC+GGG 0.600182 2_4:+7846714 None:intergenic
ATGCAGGTATGAGGAAGCTA+GGG 0.600493 2_4:-7844407 Msa0312670:intron
GTCCTGGGATCTTCAGCTGA+GGG 0.601211 2_4:+7846751 None:intergenic
GTTACCGCAGCCATCGTCGA+GGG 0.603962 2_4:+7851407 None:intergenic
GCAGGATCTTTACTTGTACC+CGG 0.604637 2_4:-7844868 Msa0312670:CDS
GCTCAGCACTCCTACTGGAG+TGG 0.606638 2_4:-7845081 Msa0312670:intron
TTTCAGTGACATGGTTGCAG+AGG 0.609120 2_4:-7844353 Msa0312670:intron
AAGTTGAGGGAGATGAAACC+TGG 0.609533 2_4:-7846952 Msa0312670:CDS
AGTTGATAAGACTAAACACT+GGG 0.609767 2_4:-7845994 Msa0312670:CDS
AATTGAGTATGTACCAGAGA+AGG 0.613096 2_4:-7850903 Msa0312670:CDS
ATATTAATAAGCCATGGAGG+AGG 0.613756 2_4:+7846880 None:intergenic
CTGTACCTGTACCTAGGCAT+TGG 0.613828 2_4:-7850250 Msa0312670:CDS
AGAAAGATGCAAGAAAAGGA+CGG 0.618296 2_4:-7844213 Msa0312670:CDS
TTCAGCTGAGGGTAAGATGG+TGG 0.618413 2_4:+7846762 None:intergenic
TGTGGTTGGCACTGGCACCC+AGG 0.621505 2_4:-7844727 Msa0312670:CDS
TCAGGTGTCTCCACTCCAGT+AGG 0.629943 2_4:+7845071 None:intergenic
GAAGCTCTTGGTATGCCTGA+GGG 0.630070 2_4:-7846907 Msa0312670:CDS
CAATTTCCTTGATGTGAAGG+CGG 0.630272 2_4:-7851515 Msa0312670:five_prime_UTR
ATAACCAAAGCTAGCTCCAG+CGG 0.635047 2_4:+7846713 None:intergenic
AGAGAAATAAGGAGCCTGAG+AGG 0.638603 2_4:-7845025 Msa0312670:CDS
ACACTGGGGTGATTTGGAGG+AGG 0.642355 2_4:-7845979 Msa0312670:CDS
AGTCCTGGGATCTTCAGCTG+AGG 0.642746 2_4:+7846750 None:intergenic
GTAACACTGTACCTGTACCT+AGG 0.642872 2_4:-7850256 Msa0312670:CDS
CAGTTGATAAGACTAAACAC+TGG 0.643279 2_4:-7845995 Msa0312670:CDS
AAGTATACTTCGTCGACAGG+AGG 0.657544 2_4:+7846669 None:intergenic
AGAAGCTCTTGGTATGCCTG+AGG 0.662536 2_4:-7846908 Msa0312670:CDS
TTCGTGATACAACTCCCCAA+GGG 0.663464 2_4:+7847922 None:intergenic
TTGGTGTGCAGGTAAAGTTG+AGG 0.667122 2_4:-7846966 Msa0312670:intron
GCCAAAGCTGACATCCCTTG+GGG 0.669292 2_4:-7847936 Msa0312670:CDS
TGTTACCGCAGCCATCGTCG+AGG 0.690229 2_4:+7851406 None:intergenic
CTTGGGGAGTTGTATCACGA+AGG 0.695093 2_4:-7847920 Msa0312670:CDS
TGCATATTAATAAGCCATGG+AGG 0.699081 2_4:+7846877 None:intergenic
CCAACCACATAACTACAGAG+AGG 0.747942 2_4:+7844741 None:intergenic
GTTGATAAGACTAAACACTG+GGG 0.838951 2_4:-7845993 Msa0312670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTCTTCTTAATATTT+AGG - chr2_4:7844641-7844660 Msa0312670:intron 10.0%
!! ATAAAATAAAAATCAACTAA+AGG + chr2_4:7844785-7844804 None:intergenic 10.0%
!!! AAGAATTTTATATAGATTTT+GGG - chr2_4:7847074-7847093 Msa0312670:intron 10.0%
!! AAATTAAAAAAAAAACAATG+TGG - chr2_4:7850109-7850128 Msa0312670:intron 10.0%
!!! TTTTTTTTTTTTTTTTTGGT+TGG - chr2_4:7851424-7851443 Msa0312670:five_prime_UTR 10.0%
!!! TTGATTTGAATTAAATTGAT+AGG - chr2_4:7844327-7844346 Msa0312670:intron 15.0%
!!! TATTTCATAATTTCATTTTC+AGG - chr2_4:7845250-7845269 Msa0312670:intron 15.0%
!!! CGTTTGAAATTAATATATTA+CGG + chr2_4:7845755-7845774 None:intergenic 15.0%
!!! AATCAATTTTTTTTACAGAA+TGG - chr2_4:7845851-7845870 Msa0312670:intron 15.0%
!! TTAAATTTCAGTTTCATTTA+GGG - chr2_4:7845935-7845954 Msa0312670:CDS 15.0%
!!! TTGTTTTCAAGATTATAAAT+TGG + chr2_4:7846019-7846038 None:intergenic 15.0%
!!! CTTTTTTGCATAATATTAAT+GGG - chr2_4:7846500-7846519 Msa0312670:intron 15.0%
!! ATAAATAATTGAAGATTAAG+AGG + chr2_4:7846610-7846629 None:intergenic 15.0%
!!! GAAGAATTTTATATAGATTT+TGG - chr2_4:7847073-7847092 Msa0312670:intron 15.0%
!!! TAATATATTGATTTTACAAC+AGG + chr2_4:7847161-7847180 None:intergenic 15.0%
!! TAAATGAACTTTATATGAAA+TGG - chr2_4:7847271-7847290 Msa0312670:intron 15.0%
!! AATAAAATTGTAAAACACAA+AGG + chr2_4:7847507-7847526 None:intergenic 15.0%
!! TAAAATAGTTATAGAACATA+TGG + chr2_4:7847554-7847573 None:intergenic 15.0%
!! AAATATAACTATTAGAAAGT+AGG + chr2_4:7847580-7847599 None:intergenic 15.0%
!! TTTCTAATAGTTATATTTCT+TGG - chr2_4:7847582-7847601 Msa0312670:intron 15.0%
!!! TCGTTTTCTTTTAATTATTT+AGG - chr2_4:7847908-7847927 Msa0312670:CDS 15.0%
!!! TATACTACTGAAATTATTTT+TGG - chr2_4:7848026-7848045 Msa0312670:intron 15.0%
!!! ATACTACTGAAATTATTTTT+GGG - chr2_4:7848027-7848046 Msa0312670:intron 15.0%
!!! TTTCTAGTATTTTGTTTATT+AGG - chr2_4:7848135-7848154 Msa0312670:CDS 15.0%
!! TTACTTATATATTATTGGAA+CGG - chr2_4:7848570-7848589 Msa0312670:intron 15.0%
!!! ATAAATGATTTTCTTTATGT+TGG + chr2_4:7849900-7849919 None:intergenic 15.0%
!!! TTTTCAATGATATTTGTTTT+AGG - chr2_4:7850935-7850954 Msa0312670:intron 15.0%
!!! TTTCATGTTTTTTTCTTTTT+TGG - chr2_4:7850968-7850987 Msa0312670:intron 15.0%
!! TTGAGGAAAAAATTGAAATA+TGG + chr2_4:7844145-7844164 None:intergenic 20.0%
!! ATCAATATTGTAGTGAAATT+AGG - chr2_4:7844395-7844414 Msa0312670:CDS 20.0%
!! TCAATATTGTAGTGAAATTA+GGG - chr2_4:7844396-7844415 Msa0312670:CDS 20.0%
!!! TGATTGATTATAGAATGTTT+TGG - chr2_4:7844520-7844539 Msa0312670:CDS 20.0%
!! TTGTATATCTAAGTAGATAA+TGG - chr2_4:7844546-7844565 Msa0312670:CDS 20.0%
!!! TAGATAATGGTTTTCATAAT+TGG - chr2_4:7844559-7844578 Msa0312670:CDS 20.0%
!!! TTGTTTTGAATTTTGATTGA+AGG - chr2_4:7844833-7844852 Msa0312670:intron 20.0%
!!! AAGATTAAACTTTTTCAGAA+TGG + chr2_4:7845083-7845102 None:intergenic 20.0%
!! ATGAAATATCATTTGCATAA+CGG + chr2_4:7845238-7845257 None:intergenic 20.0%
!!! ATAATTTCATTTTCAGGTTT+GGG - chr2_4:7845256-7845275 Msa0312670:intron 20.0%
!! ATCTTATATATGTATGTATG+TGG - chr2_4:7845498-7845517 Msa0312670:intron 20.0%
!! TTGTATTATGTTATATGTGA+TGG - chr2_4:7845646-7845665 Msa0312670:intron 20.0%
!! TGTATTATGTTATATGTGAT+GGG - chr2_4:7845647-7845666 Msa0312670:intron 20.0%
!! CTAAATGAAACTGAAATTTA+AGG + chr2_4:7845936-7845955 None:intergenic 20.0%
!! CTTAAATTTCAGTTTCATTT+AGG - chr2_4:7845934-7845953 Msa0312670:CDS 20.0%
!! TTTATAATCTTGAAAACAAG+TGG - chr2_4:7846020-7846039 Msa0312670:intron 20.0%
!!! AAATATCCTAGTTTATTTTC+AGG + chr2_4:7846296-7846315 None:intergenic 20.0%
!! CAAAAAAGCCATATAATTAT+AGG + chr2_4:7846488-7846507 None:intergenic 20.0%
!!! GCTTTTTTGCATAATATTAA+TGG - chr2_4:7846499-7846518 Msa0312670:intron 20.0%
!! TTAAATAATCTTGAGATTCT+TGG + chr2_4:7847026-7847045 None:intergenic 20.0%
!! AATCTCAAGATTATTTAAAC+AGG - chr2_4:7847028-7847047 Msa0312670:intron 20.0%
!!! ATTTTATATAGATTTTGGGA+TGG - chr2_4:7847078-7847097 Msa0312670:intron 20.0%
!! AAAAATGGATATAGATTATC+AGG - chr2_4:7847464-7847483 Msa0312670:intron 20.0%
!!! ATTTATTTCTTGCTACATTT+TGG - chr2_4:7847767-7847786 Msa0312670:intron 20.0%
!! TGTTAAATAAAATCAACAAG+TGG - chr2_4:7848001-7848020 Msa0312670:intron 20.0%
!! AATATTTCATACATTTACAC+TGG + chr2_4:7848213-7848232 None:intergenic 20.0%
!!! ACAAGTTTTCACTTTTAATT+TGG - chr2_4:7848537-7848556 Msa0312670:intron 20.0%
!!! ATAAATTCACTGTTTGTTTT+TGG - chr2_4:7848942-7848961 Msa0312670:intron 20.0%
!! GTTATACTATTTAATTAGAG+TGG - chr2_4:7849092-7849111 Msa0312670:intron 20.0%
!! ACAATGAAGTTAGAAAAAAT+GGG + chr2_4:7849151-7849170 None:intergenic 20.0%
!! AACAATGAAGTTAGAAAAAA+TGG + chr2_4:7849152-7849171 None:intergenic 20.0%
!!! ATTTTTTCTAACTTCATTGT+TGG - chr2_4:7849151-7849170 Msa0312670:intron 20.0%
!!! TTTTTTCTAACTTCATTGTT+GGG - chr2_4:7849152-7849171 Msa0312670:intron 20.0%
!! CAAAAAGAAAACTACATATA+TGG + chr2_4:7849238-7849257 None:intergenic 20.0%
!! TACAATGTTTACATTAAACA+CGG + chr2_4:7849270-7849289 None:intergenic 20.0%
!!! AGGAATATATTTTGAAGTTT+TGG + chr2_4:7849343-7849362 None:intergenic 20.0%
!!! TTTTAAAGTTGACTTTGTAT+GGG + chr2_4:7849502-7849521 None:intergenic 20.0%
!!! ATTTTAAAGTTGACTTTGTA+TGG + chr2_4:7849503-7849522 None:intergenic 20.0%
!! ATGTTAACAAGATAATGAAA+TGG + chr2_4:7849747-7849766 None:intergenic 20.0%
!!! CTAGTTTTTTTCTTTTGAAA+GGG - chr2_4:7849846-7849865 Msa0312670:intron 20.0%
!! ATGTTGAGTTATTTATTAGT+AGG - chr2_4:7850014-7850033 Msa0312670:intron 20.0%
!! TGTTGAGTTATTTATTAGTA+GGG - chr2_4:7850015-7850034 Msa0312670:intron 20.0%
!! TCATTTAGTAAATTTATCAG+AGG - chr2_4:7850038-7850057 Msa0312670:intron 20.0%
!! TGTGACTTTAAATATTACAA+GGG + chr2_4:7850284-7850303 None:intergenic 20.0%
!! ATGTGACTTTAAATATTACA+AGG + chr2_4:7850285-7850304 None:intergenic 20.0%
!! TAAAGTCACATTAATTATAC+AGG - chr2_4:7850294-7850313 Msa0312670:CDS 20.0%
!!! TTTGGTTCATTTTTTTTAGA+GGG + chr2_4:7850395-7850414 None:intergenic 20.0%
!!! ATAGATAACGGAAAAATAAA+AGG + chr2_4:7850661-7850680 None:intergenic 20.0%
!! TATCAAGAAACAAACAATTA+TGG + chr2_4:7850801-7850820 None:intergenic 20.0%
! ACGAAAATCAAATGAATCAA+AGG + chr2_4:7844287-7844306 None:intergenic 25.0%
!! GATTTTCGTTGTTTATAGAT+TGG - chr2_4:7844298-7844317 Msa0312670:intron 25.0%
! TCAATTTCCTAGTATTACAA+TGG + chr2_4:7844863-7844882 None:intergenic 25.0%
! ATACTAGGAAATTGATAAGA+AGG - chr2_4:7844868-7844887 Msa0312670:CDS 25.0%
!! ATTGCACAATTAGTTTGAAA+TGG - chr2_4:7845189-7845208 Msa0312670:intron 25.0%
!! ACAATTAGTTTGAAATGGTT+GGG - chr2_4:7845194-7845213 Msa0312670:intron 25.0%
!!! CATAATTTCATTTTCAGGTT+TGG - chr2_4:7845255-7845274 Msa0312670:intron 25.0%
! CCTATAATAACTATCAAGTT+AGG + chr2_4:7845395-7845414 None:intergenic 25.0%
!! CCTAACTTGATAGTTATTAT+AGG - chr2_4:7845392-7845411 Msa0312670:intron 25.0%
! AATAAAAGAGAAACAACTAG+AGG + chr2_4:7845589-7845608 None:intergenic 25.0%
!! TGTTATATTGATTGCGAATA+TGG - chr2_4:7845614-7845633 Msa0312670:intron 25.0%
! GTATTATGTTATATGTGATG+GGG - chr2_4:7845648-7845667 Msa0312670:intron 25.0%
! TAATATATTACGGTTCGATT+CGG + chr2_4:7845745-7845764 None:intergenic 25.0%
! AAAATTGTATAGATACGGTT+CGG + chr2_4:7845806-7845825 None:intergenic 25.0%
! AAACTAGGATATTTGTAGTT+CGG - chr2_4:7846302-7846321 Msa0312670:intron 25.0%
! GAAATTAACTGAACAAATTC+TGG + chr2_4:7846412-7846431 None:intergenic 25.0%
! CAGTTAATTTCAGTATAGTT+CGG - chr2_4:7846421-7846440 Msa0312670:intron 25.0%
! AAAATTCAAAGTAGAGCTAT+TGG + chr2_4:7846547-7846566 None:intergenic 25.0%
! TCAGCATCAACTATATAATT+GGG + chr2_4:7846649-7846668 None:intergenic 25.0%
! GATAGCACATAAAATTCATA+AGG + chr2_4:7846905-7846924 None:intergenic 25.0%
! CAGTAGAGATATGTAATATT+GGG - chr2_4:7847201-7847220 Msa0312670:intron 25.0%
! AGTAGAGATATGTAATATTG+GGG - chr2_4:7847202-7847221 Msa0312670:intron 25.0%
! AATCTGGTGAAATGATTTAA+AGG + chr2_4:7847330-7847349 None:intergenic 25.0%
!!! ATATCCATTTTTCCCATTTT+TGG + chr2_4:7847456-7847475 None:intergenic 25.0%
! ACTTAAAAAATGCATCATGA+AGG + chr2_4:7847617-7847636 None:intergenic 25.0%
!!! TCTTCAATACTTTTTAGCAA+GGG + chr2_4:7847708-7847727 None:intergenic 25.0%
!!! TTCTTCAATACTTTTTAGCA+AGG + chr2_4:7847709-7847728 None:intergenic 25.0%
!! TGAAATATTTCTCTTTTGAG+AGG - chr2_4:7848224-7848243 Msa0312670:intron 25.0%
! TTAGATCTTTCATCAAAAGA+GGG + chr2_4:7848441-7848460 None:intergenic 25.0%
!!! ATTAGTTTGTATGATGACAT+TGG - chr2_4:7848594-7848613 Msa0312670:intron 25.0%
! AAGCTGGTTAATAAGATAAA+GGG + chr2_4:7848972-7848991 None:intergenic 25.0%
! TAAGCTGGTTAATAAGATAA+AGG + chr2_4:7848973-7848992 None:intergenic 25.0%
! TTATCTTCATCTAAACAGTA+TGG - chr2_4:7848994-7849013 Msa0312670:intron 25.0%
! ACAATGTTTACATTAAACAC+GGG + chr2_4:7849269-7849288 None:intergenic 25.0%
!!! CTATTTCTTGATTACTCTTT+TGG - chr2_4:7849368-7849387 Msa0312670:intron 25.0%
! TGTATCATTCAACCAATAAA+AGG + chr2_4:7849443-7849462 None:intergenic 25.0%
!! TTTAAAGTTGACTTTGTATG+GGG + chr2_4:7849501-7849520 None:intergenic 25.0%
!!! ATTTTACCAAAAGAAAGTGT+GGG - chr2_4:7849795-7849814 Msa0312670:intron 25.0%
! GAAAAAAACTAGCAAAATCA+AGG + chr2_4:7849838-7849857 None:intergenic 25.0%
!!! GCTAGTTTTTTTCTTTTGAA+AGG - chr2_4:7849845-7849864 Msa0312670:intron 25.0%
!! ATGATTTTCTTTATGTTGGT+GGG + chr2_4:7849896-7849915 None:intergenic 25.0%
!! AATGATTTTCTTTATGTTGG+TGG + chr2_4:7849897-7849916 None:intergenic 25.0%
! GTCTTTCAATTAAGCTTATT+TGG - chr2_4:7849929-7849948 Msa0312670:intron 25.0%
!!! AGATTTTAAAATACCGTGTT+TGG - chr2_4:7850207-7850226 Msa0312670:intron 25.0%
!!! TTGGTTCATTTTTTTTAGAG+GGG + chr2_4:7850394-7850413 None:intergenic 25.0%
!!! GTTTGGTTCATTTTTTTTAG+AGG + chr2_4:7850396-7850415 None:intergenic 25.0%
!! TATTTTTCCGTTATCTATGA+AGG - chr2_4:7850663-7850682 Msa0312670:CDS 25.0%
! GAAGAGAAAGAAGAAAAAAT+TGG - chr2_4:7850691-7850710 Msa0312670:CDS 25.0%
!! AAGATGTTTTCTCTTTGAAT+AGG - chr2_4:7850901-7850920 Msa0312670:CDS 25.0%
!! AGATGTTTTCTCTTTGAATA+GGG - chr2_4:7850902-7850921 Msa0312670:CDS 25.0%
!!! TCAATGATATTTGTTTTAGG+AGG - chr2_4:7850938-7850957 Msa0312670:intron 25.0%
! GATGAAAAGAAATTCATACT+TGG + chr2_4:7851091-7851110 None:intergenic 25.0%
! GTTTCTATTTCAGATTTAGT+GGG - chr2_4:7851111-7851130 Msa0312670:intron 25.0%
!! TTTTTCTTTTCTTCTCATTC+TGG + chr2_4:7851351-7851370 None:intergenic 25.0%
! AAAAAGAAAGATGCAAGAAA+AGG - chr2_4:7851366-7851385 Msa0312670:CDS 25.0%
! AATAGTAGCTATAACTGTTT+CGG - chr2_4:7851502-7851521 Msa0312670:five_prime_UTR 25.0%
TTTCGTTGTTTATAGATTGG+AGG - chr2_4:7844301-7844320 Msa0312670:intron 30.0%
! TTTTGTCATTGCAACTTCTT+TGG - chr2_4:7844806-7844825 Msa0312670:intron 30.0%
GATAACGAGCAAAAAGAAAA+AGG - chr2_4:7844962-7844981 Msa0312670:intron 30.0%
CGTATCAAACAAGAAGAAAA+AGG - chr2_4:7844985-7845004 Msa0312670:intron 30.0%
!! AATTTGTTGTTGTATTCCTG+TGG - chr2_4:7845053-7845072 Msa0312670:CDS 30.0%
! CACAATTAGTTTGAAATGGT+TGG - chr2_4:7845193-7845212 Msa0312670:intron 30.0%
! ACAGAAGAGAAAATTTTTGC+AGG - chr2_4:7845358-7845377 Msa0312670:intron 30.0%
TGAAAACGATGAAGTCAATA+AGG - chr2_4:7845472-7845491 Msa0312670:intron 30.0%
TTTCAAACGAACTAGACTAA+TGG - chr2_4:7845766-7845785 Msa0312670:intron 30.0%
TGGGGAAAATTGTATAGATA+CGG + chr2_4:7845811-7845830 None:intergenic 30.0%
CAAAAAAACAGTTCAACTTG+GGG + chr2_4:7845829-7845848 None:intergenic 30.0%
GCAAAAAAACAGTTCAACTT+GGG + chr2_4:7845830-7845849 None:intergenic 30.0%
! TGTGCATATACAAAAGCTTT+TGG - chr2_4:7845884-7845903 Msa0312670:CDS 30.0%
! TATACAAAAGCTTTTGGTGA+TGG - chr2_4:7845890-7845909 Msa0312670:CDS 30.0%
GGGATTAATTCCTAAATTGT+CGG - chr2_4:7845955-7845974 Msa0312670:CDS 30.0%
AATTCCTAAATTGTCGGAAA+AGG - chr2_4:7845961-7845980 Msa0312670:CDS 30.0%
ATTCCTAAATTGTCGGAAAA+GGG - chr2_4:7845962-7845981 Msa0312670:CDS 30.0%
! GAATCCTAAATCCATTTTCA+CGG + chr2_4:7846200-7846219 None:intergenic 30.0%
!!! TCCTAGTTTATTTTCAGGTT+CGG + chr2_4:7846291-7846310 None:intergenic 30.0%
GTAAATTGTGTGTGAAATAG+TGG - chr2_4:7846370-7846389 Msa0312670:intron 30.0%
GAACAAATTCTGGTAGTTTA+CGG + chr2_4:7846402-7846421 None:intergenic 30.0%
AATTTCAGTATAGTTCGGTT+CGG - chr2_4:7846426-7846445 Msa0312670:intron 30.0%
!!! TCGGTTCAACTTTTTTGTTT+TGG - chr2_4:7846445-7846464 Msa0312670:intron 30.0%
!!! CGGTTCAACTTTTTTGTTTT+GGG - chr2_4:7846446-7846465 Msa0312670:intron 30.0%
ATAATTATAGGTCCCCAATT+AGG + chr2_4:7846476-7846495 None:intergenic 30.0%
ATTGGGGACCTATAATTATA+TGG - chr2_4:7846477-7846496 Msa0312670:intron 30.0%
GTCAGCATCAACTATATAAT+TGG + chr2_4:7846650-7846669 None:intergenic 30.0%
ATGAAATCAGGAAGTTGAAA+GGG + chr2_4:7846749-7846768 None:intergenic 30.0%
AATGAAATCAGGAAGTTGAA+AGG + chr2_4:7846750-7846769 None:intergenic 30.0%
ACACACATATATATGCAAAC+AGG + chr2_4:7846812-7846831 None:intergenic 30.0%
!!! GAATGTTCCCTTATTTTGAT+GGG + chr2_4:7846874-7846893 None:intergenic 30.0%
!!! AGAATGTTCCCTTATTTTGA+TGG + chr2_4:7846875-7846894 None:intergenic 30.0%
AGATTATTTAAACAGGTAGC+TGG - chr2_4:7847035-7847054 Msa0312670:intron 30.0%
GATTATTTAAACAGGTAGCT+GGG - chr2_4:7847036-7847055 Msa0312670:intron 30.0%
!!! TATATAGATTTTGGGATGGA+TGG - chr2_4:7847082-7847101 Msa0312670:intron 30.0%
!!! ATATAGATTTTGGGATGGAT+GGG - chr2_4:7847083-7847102 Msa0312670:intron 30.0%
GCAGTAGAGATATGTAATAT+TGG - chr2_4:7847200-7847219 Msa0312670:intron 30.0%
TAGATGAATGTATGTAGCAT+AGG + chr2_4:7847304-7847323 None:intergenic 30.0%
AGAAGTTGAAACAAAAGCAA+AGG - chr2_4:7847418-7847437 Msa0312670:intron 30.0%
GAAGTTGAAACAAAAGCAAA+GGG - chr2_4:7847419-7847438 Msa0312670:intron 30.0%
AGTTATATTTCTTGGTTGCT+AGG - chr2_4:7847590-7847609 Msa0312670:intron 30.0%
!!! TTTGGTTTTGTTGTAGTGTT+AGG - chr2_4:7847785-7847804 Msa0312670:intron 30.0%
CTGTGAAGTAAAAGTTACTA+TGG + chr2_4:7847826-7847845 None:intergenic 30.0%
! CATAGTAACTTTTACTTCAC+AGG - chr2_4:7847824-7847843 Msa0312670:intron 30.0%
GAAACAAACTAATGCAAAAG+AGG + chr2_4:7848075-7848094 None:intergenic 30.0%
!! ATATTTCTCTTTTGAGAGGT+TGG - chr2_4:7848228-7848247 Msa0312670:intron 30.0%
AGAAAGACACAAAATAGAGA+AGG - chr2_4:7848386-7848405 Msa0312670:intron 30.0%
TAGATCTTTCATCAAAAGAG+GGG + chr2_4:7848440-7848459 None:intergenic 30.0%
CTTAGATCTTTCATCAAAAG+AGG + chr2_4:7848442-7848461 None:intergenic 30.0%
!! CTTATTCTAGCTTTAACTAG+AGG - chr2_4:7848472-7848491 Msa0312670:intron 30.0%
! ATTTTTCGTTGATCCTGTAT+TGG - chr2_4:7848750-7848769 Msa0312670:intron 30.0%
TAGAACACGTTTAATGTACA+AGG + chr2_4:7848776-7848795 None:intergenic 30.0%
!!! TATTTTTTTCCCCAGAGATA+TGG - chr2_4:7848794-7848813 Msa0312670:intron 30.0%
AGCTGGTTAATAAGATAAAG+GGG + chr2_4:7848971-7848990 None:intergenic 30.0%
TTAGATGAAGATAAGTAAGC+TGG + chr2_4:7848988-7849007 None:intergenic 30.0%
ATGAAGTTAGAAAAAATGGG+TGG + chr2_4:7849148-7849167 None:intergenic 30.0%
!!! TTTGAAGTTTTGGATAAGCA+AGG + chr2_4:7849333-7849352 None:intergenic 30.0%
GTAATCAAGAAATAGCAATG+AGG + chr2_4:7849363-7849382 None:intergenic 30.0%
!! AGTTGATAAGACTAAACACT+GGG - chr2_4:7849589-7849608 Msa0312670:intron 30.0%
ATCTTGTTAACATGTGATGT+AGG - chr2_4:7849754-7849773 Msa0312670:intron 30.0%
! CATTTTACCAAAAGAAAGTG+TGG - chr2_4:7849794-7849813 Msa0312670:intron 30.0%
AAAAAACAATGTGGATATGC+AGG - chr2_4:7850118-7850137 Msa0312670:intron 30.0%
!!! TTCATTTTTTTTAGAGGGGA+GGG + chr2_4:7850390-7850409 None:intergenic 30.0%
TACTCTAAATCTTAGTGGTT+TGG + chr2_4:7850413-7850432 None:intergenic 30.0%
TGGATTACTCTAAATCTTAG+TGG + chr2_4:7850418-7850437 None:intergenic 30.0%
CAAAATGACAGAAGAAAAAG+AGG + chr2_4:7850483-7850502 None:intergenic 30.0%
GAAAAACTCACTTGATAAAG+AGG + chr2_4:7850584-7850603 None:intergenic 30.0%
GCTGTTAAAAAATGTTCAGT+AGG + chr2_4:7850606-7850625 None:intergenic 30.0%
AAAGAAGAAAAAATTGGTGC+AGG - chr2_4:7850697-7850716 Msa0312670:CDS 30.0%
AAAATTTACATACGTGTGTC+CGG + chr2_4:7850737-7850756 None:intergenic 30.0%
!!! TTTTCTTTTTTGGAACTTCC+AGG - chr2_4:7850978-7850997 Msa0312670:intron 30.0%
AAAAGAAATTCATACTTGGC+AGG + chr2_4:7851087-7851106 None:intergenic 30.0%
CGTTTCTATTTCAGATTTAG+TGG - chr2_4:7851110-7851129 Msa0312670:intron 30.0%
AACTAACCCTACTAATCATA+TGG - chr2_4:7851259-7851278 Msa0312670:intron 30.0%
AAGTTAGATACAGATCATGA+TGG + chr2_4:7851313-7851332 None:intergenic 30.0%
TCATGATCTGTATCTAACTT+TGG - chr2_4:7851313-7851332 Msa0312670:intron 30.0%
! ATCTAACTTTGGTCTTTATC+TGG - chr2_4:7851324-7851343 Msa0312670:intron 30.0%
ATAGTAGCTATAACTGTTTC+GGG - chr2_4:7851503-7851522 Msa0312670:five_prime_UTR 30.0%
GTAACACTTCCTTACCAAAA+CGG - chr2_4:7844194-7844213 Msa0312670:CDS 35.0%
GTAACAGAGGTTAGAAGAAT+TGG + chr2_4:7844254-7844273 None:intergenic 35.0%
AATTGAGTATGTACCAGAGA+AGG - chr2_4:7844680-7844699 Msa0312670:intron 35.0%
! ATTTAGTTTCACTGCTTCAG+AGG - chr2_4:7844749-7844768 Msa0312670:CDS 35.0%
AGGTTTGCCATTGTAATACT+AGG - chr2_4:7844853-7844872 Msa0312670:intron 35.0%
GGAAATTGATAAGAAGGATG+AGG - chr2_4:7844874-7844893 Msa0312670:CDS 35.0%
AATTGATAAGAAGGATGAGG+TGG - chr2_4:7844877-7844896 Msa0312670:CDS 35.0%
TTCAAAAACACCAGCAACTT+GGG + chr2_4:7845299-7845318 None:intergenic 35.0%
TTTCAAAAACACCAGCAACT+TGG + chr2_4:7845300-7845319 None:intergenic 35.0%
AATGATGTAAGCATGTCTGA+TGG - chr2_4:7845417-7845436 Msa0312670:intron 35.0%
ATTACTACATCACTCATGCA+GGG + chr2_4:7845448-7845467 None:intergenic 35.0%
TATTACTACATCACTCATGC+AGG + chr2_4:7845449-7845468 None:intergenic 35.0%
TGCATGAGTGATGTAGTAAT+AGG - chr2_4:7845448-7845467 Msa0312670:intron 35.0%
GCATGAGTGATGTAGTAATA+GGG - chr2_4:7845449-7845468 Msa0312670:intron 35.0%
! TGTTATATGTGATGGGGAAT+AGG - chr2_4:7845654-7845673 Msa0312670:intron 35.0%
TATGAACTGGTGTAATGGTT+TGG + chr2_4:7845718-7845737 None:intergenic 35.0%
GATCTTATGAACTGGTGTAA+TGG + chr2_4:7845723-7845742 None:intergenic 35.0%
CGCAAAAAAACAGTTCAACT+TGG + chr2_4:7845831-7845850 None:intergenic 35.0%
! ATGGATGAAACAGTGGTTTT+GGG - chr2_4:7845909-7845928 Msa0312670:CDS 35.0%
! ATTCCCTTTTCCGACAATTT+AGG + chr2_4:7845968-7845987 None:intergenic 35.0%
ACGACTATGTTTAACTCACT+AGG + chr2_4:7846051-7846070 None:intergenic 35.0%
!!! CCTCGTAGTTTTAGAAATCA+GGG + chr2_4:7846078-7846097 None:intergenic 35.0%
!!! ACCTCGTAGTTTTAGAAATC+AGG + chr2_4:7846079-7846098 None:intergenic 35.0%
TTGTTTGAACAAACCTTGTG+AGG - chr2_4:7846099-7846118 Msa0312670:intron 35.0%
TGTTTGAACAAACCTTGTGA+GGG - chr2_4:7846100-7846119 Msa0312670:intron 35.0%
! TAAATCCATTTTCACGGTCA+CGG + chr2_4:7846194-7846213 None:intergenic 35.0%
CATTGATAGAGAGAGGATTT+AGG - chr2_4:7846222-7846241 Msa0312670:intron 35.0%
! AGAGGATTTAGGTTTATGAG+CGG - chr2_4:7846233-7846252 Msa0312670:intron 35.0%
ACCGAACCTGAAAATAAACT+AGG - chr2_4:7846287-7846306 Msa0312670:intron 35.0%
TTGTGTGTGAAATAGTGGTT+TGG - chr2_4:7846375-7846394 Msa0312670:intron 35.0%
!!! TCAACTTTTTTGTTTTGGGC+AGG - chr2_4:7846450-7846469 Msa0312670:intron 35.0%
!! CAGAAGCTGTGTTATTGTTT+TGG - chr2_4:7846696-7846715 Msa0312670:CDS 35.0%
! TCTGATTTTCTCAATACCAG+TGG + chr2_4:7846777-7846796 None:intergenic 35.0%
! TGGTATTGAGAAAATCAGAC+AGG - chr2_4:7846778-7846797 Msa0312670:intron 35.0%
AACAACCTCCCATCAAAATA+AGG - chr2_4:7846863-7846882 Msa0312670:intron 35.0%
ACAACCTCCCATCAAAATAA+GGG - chr2_4:7846864-7846883 Msa0312670:intron 35.0%
ACTTATAGCAAGTTAGAGTG+TGG - chr2_4:7847131-7847150 Msa0312670:intron 35.0%
CTTATAGCAAGTTAGAGTGT+GGG - chr2_4:7847132-7847151 Msa0312670:intron 35.0%
TTATCAACTCATCAACTCAC+AGG - chr2_4:7847178-7847197 Msa0312670:intron 35.0%
TGTAATATTGGGGATGTTGA+TGG - chr2_4:7847212-7847231 Msa0312670:intron 35.0%
AAATTCAACAGAGAGACACA+AGG + chr2_4:7847243-7847262 None:intergenic 35.0%
AAACAGCAACTACAACAATC+TGG + chr2_4:7847346-7847365 None:intergenic 35.0%
GAACGTATGCAACCAAAAAT+GGG - chr2_4:7847441-7847460 Msa0312670:intron 35.0%
GCAACCAAAAATGGGAAAAA+TGG - chr2_4:7847449-7847468 Msa0312670:intron 35.0%
TCACGAAGGAAAAGAATTTG+AGG - chr2_4:7847677-7847696 Msa0312670:intron 35.0%
! TAACTTTTACTTCACAGGAG+TGG - chr2_4:7847829-7847848 Msa0312670:intron 35.0%
GATCTCTAATGTTGAGCAAT+AGG - chr2_4:7847851-7847870 Msa0312670:intron 35.0%
AATGTTGAGCAATAGGTGTT+TGG - chr2_4:7847858-7847877 Msa0312670:intron 35.0%
TTCCACACAAATCAATCGTT+GGG + chr2_4:7847884-7847903 None:intergenic 35.0%
! CAATCTATGTTTTTCCCATC+AGG + chr2_4:7848104-7848123 None:intergenic 35.0%
AGAAAGACACAAAATGGAGA+AGG + chr2_4:7848287-7848306 None:intergenic 35.0%
TTCGAGAGAAAGACACAAAA+TGG + chr2_4:7848293-7848312 None:intergenic 35.0%
GTTTGTATGATGACATTGGT+TGG - chr2_4:7848598-7848617 Msa0312670:intron 35.0%
ATATTAATAAGCCATGGAGG+AGG + chr2_4:7848706-7848725 None:intergenic 35.0%
TGCATATTAATAAGCCATGG+AGG + chr2_4:7848709-7848728 None:intergenic 35.0%
TCCATGGCTTATTAATATGC+AGG - chr2_4:7848708-7848727 Msa0312670:intron 35.0%
ACCTGCATATTAATAAGCCA+TGG + chr2_4:7848712-7848731 None:intergenic 35.0%
TTAATGTACAAGGCCAATAC+AGG + chr2_4:7848766-7848785 None:intergenic 35.0%
GCTGGTTAATAAGATAAAGG+GGG + chr2_4:7848970-7848989 None:intergenic 35.0%
CAAAAACATCTCCATACAGT+GGG + chr2_4:7849023-7849042 None:intergenic 35.0%
! TCTTGATTACTCTTTTGGTG+TGG - chr2_4:7849373-7849392 Msa0312670:intron 35.0%
ATAAAAGGACTGCCTCTTAT+GGG + chr2_4:7849428-7849447 None:intergenic 35.0%
AATAAAAGGACTGCCTCTTA+TGG + chr2_4:7849429-7849448 None:intergenic 35.0%
! ATAAGAGGCAGTCCTTTTAT+TGG - chr2_4:7849428-7849447 Msa0312670:intron 35.0%
!! CAGTGTTTAGTCTTATCAAC+TGG + chr2_4:7849590-7849609 None:intergenic 35.0%
!! CAGTTGATAAGACTAAACAC+TGG - chr2_4:7849588-7849607 Msa0312670:intron 35.0%
! GTTGATAAGACTAAACACTG+GGG - chr2_4:7849590-7849609 Msa0312670:intron 35.0%
!! AGTCTGTTGATAGTCTATCA+AGG - chr2_4:7849708-7849727 Msa0312670:intron 35.0%
AAACTAGCAAAATCAAGGTG+AGG + chr2_4:7849833-7849852 None:intergenic 35.0%
! AGTAAATTTATCAGAGGTGC+TGG - chr2_4:7850044-7850063 Msa0312670:intron 35.0%
!! GTAAATTTATCAGAGGTGCT+GGG - chr2_4:7850045-7850064 Msa0312670:intron 35.0%
TGCTTATTAGGTTAGGTACT+TGG - chr2_4:7850082-7850101 Msa0312670:intron 35.0%
TTAGGGTCTGTTAGGTTTAA+TGG - chr2_4:7850147-7850166 Msa0312670:intron 35.0%
! TGTTAGGTTTAATGGATGAG+AGG - chr2_4:7850155-7850174 Msa0312670:intron 35.0%
! GTTAGGTTTAATGGATGAGA+GGG - chr2_4:7850156-7850175 Msa0312670:intron 35.0%
!!! TCATTTTTTTTAGAGGGGAG+GGG + chr2_4:7850389-7850408 None:intergenic 35.0%
!!! GTTCATTTTTTTTAGAGGGG+AGG + chr2_4:7850391-7850410 None:intergenic 35.0%
TGACAGTAAATACCTGTACT+GGG + chr2_4:7850442-7850461 None:intergenic 35.0%
TTGACAGTAAATACCTGTAC+TGG + chr2_4:7850443-7850462 None:intergenic 35.0%
TGACAGAAGAAAAAGAGGTA+AGG + chr2_4:7850478-7850497 None:intergenic 35.0%
TCAAGCACCTTCATAGATAA+CGG + chr2_4:7850673-7850692 None:intergenic 35.0%
AAATTTACATACGTGTGTCC+GGG + chr2_4:7850736-7850755 None:intergenic 35.0%
ATAACTACAGAGAGGAGAAA+AGG + chr2_4:7850837-7850856 None:intergenic 35.0%
TTTCTCTTTGAATAGGGTAG+AGG - chr2_4:7850908-7850927 Msa0312670:CDS 35.0%
TTCTCTTTGAATAGGGTAGA+GGG - chr2_4:7850909-7850928 Msa0312670:CDS 35.0%
AGGTCAAAAGTCAGATAAAG+TGG - chr2_4:7851014-7851033 Msa0312670:intron 35.0%
AAATGATTTCTTACCTCTGC+TGG - chr2_4:7851149-7851168 Msa0312670:intron 35.0%
GCAGTTCCATATGATTAGTA+GGG + chr2_4:7851268-7851287 None:intergenic 35.0%
TGCAGTTCCATATGATTAGT+AGG + chr2_4:7851269-7851288 None:intergenic 35.0%
AGAAAGATGCAAGAAAAGGA+CGG - chr2_4:7851370-7851389 Msa0312670:CDS 35.0%
CGAGGGTTTAAGAGAAATTG+AGG + chr2_4:7844162-7844181 None:intergenic 40.0%
AGAAGAATTGGAACCTGCTT+CGG + chr2_4:7844242-7844261 None:intergenic 40.0%
AGGTTATGCGATAGTAACAG+AGG + chr2_4:7844267-7844286 None:intergenic 40.0%
! TTTTCAGAATGGATCTCCAC+AGG + chr2_4:7845072-7845091 None:intergenic 40.0%
ATTCCTACCTCAACAACATC+AGG + chr2_4:7845162-7845181 None:intergenic 40.0%
TGTATGTATGTGGTTCTTGC+AGG - chr2_4:7845508-7845527 Msa0312670:intron 40.0%
GTATGTATGTGGTTCTTGCA+GGG - chr2_4:7845509-7845528 Msa0312670:intron 40.0%
TATGTATGTGGTTCTTGCAG+GGG - chr2_4:7845510-7845529 Msa0312670:intron 40.0%
ACTGGTAGGTGTTTGGAAAT+GGG - chr2_4:7845560-7845579 Msa0312670:intron 40.0%
!! TCGATTCGGATCTTATGAAC+TGG + chr2_4:7845731-7845750 None:intergenic 40.0%
!! TTTGGTGATGGATGAAACAG+TGG - chr2_4:7845902-7845921 Msa0312670:CDS 40.0%
! GATGGATGAAACAGTGGTTT+TGG - chr2_4:7845908-7845927 Msa0312670:CDS 40.0%
ATTGTCGGAAAAGGGAATGT+TGG - chr2_4:7845970-7845989 Msa0312670:CDS 40.0%
!! CCCTGATTTCTAAAACTACG+AGG - chr2_4:7846075-7846094 Msa0312670:intron 40.0%
TTGTGAGGGAGAAATAGCTT+GGG - chr2_4:7846114-7846133 Msa0312670:intron 40.0%
! GTGACCGTGAAAATGGATTT+AGG - chr2_4:7846193-7846212 Msa0312670:intron 40.0%
GATTCGTCATTGATAGAGAG+AGG - chr2_4:7846215-7846234 Msa0312670:intron 40.0%
TTAGGTTTATGAGCGGATCT+TGG - chr2_4:7846240-7846259 Msa0312670:intron 40.0%
GAGCATTAAGCACAATGGAA+AGG + chr2_4:7846576-7846595 None:intergenic 40.0%
TTCCATTGTGCTTAATGCTC+AGG - chr2_4:7846576-7846595 Msa0312670:intron 40.0%
!!! AGCTGTGTTATTGTTTTGGC+AGG - chr2_4:7846700-7846719 Msa0312670:CDS 40.0%
!!! GCTGTGTTATTGTTTTGGCA+GGG - chr2_4:7846701-7846720 Msa0312670:CDS 40.0%
!!! CTGTGTTATTGTTTTGGCAG+GGG - chr2_4:7846702-7846721 Msa0312670:CDS 40.0%
!!! TGTTCCCTTATTTTGATGGG+AGG + chr2_4:7846871-7846890 None:intergenic 40.0%
GCAGTAGTATAAGCATCTGA+TGG + chr2_4:7846956-7846975 None:intergenic 40.0%
GCAGGCTTATATTGAGAAAG+AGG - chr2_4:7847389-7847408 Msa0312670:intron 40.0%
GGAACGTATGCAACCAAAAA+TGG - chr2_4:7847440-7847459 Msa0312670:intron 40.0%
!! ATGTCAGCTTTGGCTTTGTT+TGG + chr2_4:7847641-7847660 None:intergenic 40.0%
! GTAGTGTTAGGCTAGTTCTT+AGG - chr2_4:7847797-7847816 Msa0312670:intron 40.0%
GTTCCACACAAATCAATCGT+TGG + chr2_4:7847885-7847904 None:intergenic 40.0%
! TCTATGTTTTTCCCATCAGG+TGG + chr2_4:7848101-7848120 None:intergenic 40.0%
AGACACAAAATGGAGAAGGA+GGG + chr2_4:7848283-7848302 None:intergenic 40.0%
AAGACACAAAATGGAGAAGG+AGG + chr2_4:7848284-7848303 None:intergenic 40.0%
GAGAAGGAGAGAATGAGATA+AGG - chr2_4:7848402-7848421 Msa0312670:intron 40.0%
CTAACGCTCAACTAGATCAA+TGG + chr2_4:7848501-7848520 None:intergenic 40.0%
TGAAAACTTGTGAATGTGCC+TGG + chr2_4:7848528-7848547 None:intergenic 40.0%
AAGTCGTGTGATAACATACC+AGG + chr2_4:7848652-7848671 None:intergenic 40.0%
! AGAAAGTATACTTCGTCGAC+AGG + chr2_4:7848920-7848939 None:intergenic 40.0%
CCAAAAACATCTCCATACAG+TGG + chr2_4:7849024-7849043 None:intergenic 40.0%
! CCACTGTATGGAGATGTTTT+TGG - chr2_4:7849021-7849040 Msa0312670:intron 40.0%
!! TGATTACTCTTTTGGTGTGG+CGG - chr2_4:7849376-7849395 Msa0312670:intron 40.0%
CTCTTATGGGTGAAAAGAGA+AGG + chr2_4:7849415-7849434 None:intergenic 40.0%
! CTTCTCTTTTCACCCATAAG+AGG - chr2_4:7849413-7849432 Msa0312670:intron 40.0%
GAAGAGGAGGAATTTGAAGA+TGG - chr2_4:7849680-7849699 Msa0312670:intron 40.0%
! TGTGATGTAGGTTTGAAGTG+TGG - chr2_4:7849766-7849785 Msa0312670:intron 40.0%
! ATGTAGGTTTGAAGTGTGGT+TGG - chr2_4:7849770-7849789 Msa0312670:intron 40.0%
! AGAACACCCACACTTTCTTT+TGG + chr2_4:7849804-7849823 None:intergenic 40.0%
AGAGAGATGTGGTGCTTATT+AGG - chr2_4:7850070-7850089 Msa0312670:intron 40.0%
GATGTGGTGCTTATTAGGTT+AGG - chr2_4:7850075-7850094 Msa0312670:intron 40.0%
AAACCTAACAGACCCTAAGT+CGG + chr2_4:7850145-7850164 None:intergenic 40.0%
! GTTTAATGGATGAGAGGGAA+GGG - chr2_4:7850161-7850180 Msa0312670:intron 40.0%
! TGAGAGGGAAGGGATTTTAA+TGG - chr2_4:7850171-7850190 Msa0312670:intron 40.0%
!! AGGGAAGGGATTTTAATGGA+AGG - chr2_4:7850175-7850194 Msa0312670:intron 40.0%
!! GGGAAGGGATTTTAATGGAA+GGG - chr2_4:7850176-7850195 Msa0312670:intron 40.0%
!! AAGGGATTTTAATGGAAGGG+AGG - chr2_4:7850179-7850198 Msa0312670:intron 40.0%
!! AGGGATTTTAATGGAAGGGA+GGG - chr2_4:7850180-7850199 Msa0312670:intron 40.0%
AAAAAAGTGGGGGACTTAGA+GGG + chr2_4:7850353-7850372 None:intergenic 40.0%
AGTAAATACCTGTACTGGGA+TGG + chr2_4:7850438-7850457 None:intergenic 40.0%
CACCTGATGTTATTGACCTA+CGG - chr2_4:7850528-7850547 Msa0312670:intron 40.0%
TTCCGTAGGTCAATAACATC+AGG + chr2_4:7850533-7850552 None:intergenic 40.0%
! TATTTCTCTGTTGCTTCCGT+AGG + chr2_4:7850547-7850566 None:intergenic 40.0%
ACGGAAGCAACAGAGAAATA+AGG - chr2_4:7850547-7850566 Msa0312670:intron 40.0%
TTCTCCTCTCTGTAGTTATG+TGG - chr2_4:7850838-7850857 Msa0312670:CDS 40.0%
TTTAGCACCCGATTTATCCT+GGG + chr2_4:7850876-7850895 None:intergenic 40.0%
! TTTTAGCACCCGATTTATCC+TGG + chr2_4:7850877-7850896 None:intergenic 40.0%
AGGATAAATCGGGTGCTAAA+AGG - chr2_4:7850876-7850895 Msa0312670:CDS 40.0%
GGATAAATCGGGTGCTAAAA+GGG - chr2_4:7850877-7850896 Msa0312670:CDS 40.0%
!! TTCCAGGTCGATTTGCTTAA+AGG - chr2_4:7850994-7851013 Msa0312670:intron 40.0%
TTCTCTTAAACCCTCGACGA+TGG - chr2_4:7844166-7844185 Msa0312670:exon 45.0%
TTACCAAAACGGAGTCGTTG+CGG - chr2_4:7844205-7844224 Msa0312670:CDS 45.0%
CCTTCAAAGTCTACCTTCTC+TGG + chr2_4:7844696-7844715 None:intergenic 45.0%
CCAGAGAAGGTAGACTTTGA+AGG - chr2_4:7844693-7844712 Msa0312670:intron 45.0%
! GAAGGTAGACTTTGAAGGCA+TGG - chr2_4:7844698-7844717 Msa0312670:intron 45.0%
TGATAAGAAGGATGAGGTGG+AGG - chr2_4:7844880-7844899 Msa0312670:CDS 45.0%
CTCAAGACCTGATGTTGTTG+AGG - chr2_4:7845152-7845171 Msa0312670:intron 45.0%
AGACCTGATGTTGTTGAGGT+AGG - chr2_4:7845156-7845175 Msa0312670:intron 45.0%
TTGGGTATCCCCTTCTTTCA+AGG - chr2_4:7845212-7845231 Msa0312670:intron 45.0%
CATAACGGCCTTGAAAGAAG+GGG + chr2_4:7845223-7845242 None:intergenic 45.0%
GCATAACGGCCTTGAAAGAA+GGG + chr2_4:7845224-7845243 None:intergenic 45.0%
TGCATAACGGCCTTGAAAGA+AGG + chr2_4:7845225-7845244 None:intergenic 45.0%
GTAACACTGTACCTGTACCT+AGG - chr2_4:7845327-7845346 Msa0312670:intron 45.0%
GACTGGTAGGTGTTTGGAAA+TGG - chr2_4:7845559-7845578 Msa0312670:intron 45.0%
!! CAAGCTATTTCTCCCTCACA+AGG + chr2_4:7846115-7846134 None:intergenic 45.0%
CTTGTGAGGGAGAAATAGCT+TGG - chr2_4:7846113-7846132 Msa0312670:intron 45.0%
!!! TTGTTTTGGGCAGGCCTAAT+TGG - chr2_4:7846459-7846478 Msa0312670:intron 45.0%
!! TGTTTTGGGCAGGCCTAATT+GGG - chr2_4:7846460-7846479 Msa0312670:intron 45.0%
TGGGCACTTATTCACGACAA+AGG - chr2_4:7846519-7846538 Msa0312670:intron 45.0%
AGCCTGAGCATTAAGCACAA+TGG + chr2_4:7846581-7846600 None:intergenic 45.0%
TAAACAGGTAGCTGGGAAGT+TGG - chr2_4:7847043-7847062 Msa0312670:intron 45.0%
!! ATCTGAAGTGTTGTGCATGC+AGG - chr2_4:7847371-7847390 Msa0312670:intron 45.0%
TTCGTGATACAACTCCCCAA+GGG + chr2_4:7847664-7847683 None:intergenic 45.0%
TTTGTTTCCCACCACCTGAT+GGG - chr2_4:7848087-7848106 Msa0312670:intron 45.0%
! TGTTTTTCCCATCAGGTGGT+GGG + chr2_4:7848097-7848116 None:intergenic 45.0%
! ATGTTTTTCCCATCAGGTGG+TGG + chr2_4:7848098-7848117 None:intergenic 45.0%
GAGAAGAAGAGAATGGGAGA+AGG + chr2_4:7848261-7848280 None:intergenic 45.0%
AGGAGGGAGAAGAAGAGAAT+GGG + chr2_4:7848267-7848286 None:intergenic 45.0%
AAGGAGGGAGAAGAAGAGAA+TGG + chr2_4:7848268-7848287 None:intergenic 45.0%
GGAGAGAATGAGATAAGGAG+AGG - chr2_4:7848407-7848426 Msa0312670:intron 45.0%
CTTTCATCAAAAGAGGGGCT+TGG + chr2_4:7848435-7848454 None:intergenic 45.0%
TAGTTGAGCGTTAGTGATCC+AGG - chr2_4:7848507-7848526 Msa0312670:intron 45.0%
TTGGTGTGCAGGTAAAGTTG+AGG - chr2_4:7848617-7848636 Msa0312670:intron 45.0%
TGGTGTGCAGGTAAAGTTGA+GGG - chr2_4:7848618-7848637 Msa0312670:intron 45.0%
AAGTTGAGGGAGATGAAACC+TGG - chr2_4:7848631-7848650 Msa0312670:intron 45.0%
CACGACTTGAAAGAAGCTCT+TGG - chr2_4:7848664-7848683 Msa0312670:intron 45.0%
ATCTTCAGCTGAGGGTAAGA+TGG + chr2_4:7848827-7848846 None:intergenic 45.0%
ATAACCAAAGCTAGCTCCAG+CGG + chr2_4:7848873-7848892 None:intergenic 45.0%
!! GCTAGCTTTGGTTATCATCC+TGG - chr2_4:7848878-7848897 Msa0312670:intron 45.0%
! AGCTTTGGTTATCATCCTGG+TGG - chr2_4:7848881-7848900 Msa0312670:intron 45.0%
TTGGTTATCATCCTGGTGGA+TGG - chr2_4:7848885-7848904 Msa0312670:intron 45.0%
! TGGTTATCATCCTGGTGGAT+GGG - chr2_4:7848886-7848905 Msa0312670:intron 45.0%
AAGTATACTTCGTCGACAGG+AGG + chr2_4:7848917-7848936 None:intergenic 45.0%
TGCTGATGTCCTCATTATGC+AGG - chr2_4:7849559-7849578 Msa0312670:intron 45.0%
GACTAAACACTGGGGTGATT+TGG - chr2_4:7849598-7849617 Msa0312670:intron 45.0%
! TAAACACTGGGGTGATTTGG+AGG - chr2_4:7849601-7849620 Msa0312670:intron 45.0%
GGAAGAAGAGGAAGAAGAAG+AGG - chr2_4:7849634-7849653 Msa0312670:intron 45.0%
AGAAGAGGAAGAAGAAGAGG+AGG - chr2_4:7849637-7849656 Msa0312670:intron 45.0%
GGAAGAAGAAGGAATGGAAG+AGG - chr2_4:7849664-7849683 Msa0312670:intron 45.0%
AGAAGAAGGAATGGAAGAGG+AGG - chr2_4:7849667-7849686 Msa0312670:intron 45.0%
! GGTTTAATGGATGAGAGGGA+AGG - chr2_4:7850160-7850179 Msa0312670:intron 45.0%
!! GGGATTTTAATGGAAGGGAG+GGG - chr2_4:7850181-7850200 Msa0312670:intron 45.0%
!! GGATTTTAATGGAAGGGAGG+GGG - chr2_4:7850182-7850201 Msa0312670:intron 45.0%
!! GATTTTAATGGAAGGGAGGG+GGG - chr2_4:7850183-7850202 Msa0312670:intron 45.0%
! ATACCGTGTTTGGTTCGACA+TGG - chr2_4:7850217-7850236 Msa0312670:intron 45.0%
! TACCGTGTTTGGTTCGACAT+GGG - chr2_4:7850218-7850237 Msa0312670:intron 45.0%
AAAAAGTGGGGGACTTAGAG+GGG + chr2_4:7850352-7850371 None:intergenic 45.0%
CAAAAAAGTGGGGGACTTAG+AGG + chr2_4:7850354-7850373 None:intergenic 45.0%
GCAAGAGAGCAAAAAAGTGG+GGG + chr2_4:7850363-7850382 None:intergenic 45.0%
GGCAAGAGAGCAAAAAAGTG+GGG + chr2_4:7850364-7850383 None:intergenic 45.0%
GGGCAAGAGAGCAAAAAAGT+GGG + chr2_4:7850365-7850384 None:intergenic 45.0%
AGGGCAAGAGAGCAAAAAAG+TGG + chr2_4:7850366-7850385 None:intergenic 45.0%
!!! TTTTTTTAGAGGGGAGGGGA+GGG + chr2_4:7850385-7850404 None:intergenic 45.0%
!!! TTTTTTTTAGAGGGGAGGGG+AGG + chr2_4:7850386-7850405 None:intergenic 45.0%
AGAGTAATCCATCCCAGTAC+AGG - chr2_4:7850427-7850446 Msa0312670:intron 45.0%
! ATTTTGCTCAGCACTCCTAC+TGG - chr2_4:7850497-7850516 Msa0312670:intron 45.0%
AGAGAAATAAGGAGCCTGAG+AGG - chr2_4:7850558-7850577 Msa0312670:intron 45.0%
ACTTGATAAAGAGGCCTCTC+AGG + chr2_4:7850575-7850594 None:intergenic 45.0%
GCAGGATCTTTACTTGTACC+CGG - chr2_4:7850715-7850734 Msa0312670:intron 45.0%
CCAACCACATAACTACAGAG+AGG + chr2_4:7850845-7850864 None:intergenic 45.0%
CCTCTCTGTAGTTATGTGGT+TGG - chr2_4:7850842-7850861 Msa0312670:CDS 45.0%
TGTAGTTATGTGGTTGGCAC+TGG - chr2_4:7850848-7850867 Msa0312670:CDS 45.0%
GACCTTTAAGCAAATCGACC+TGG + chr2_4:7850999-7851018 None:intergenic 45.0%
TACCTCTGCTGGATTTATGC+AGG - chr2_4:7851160-7851179 Msa0312670:intron 45.0%
TACCTGCATAAATCCAGCAG+AGG + chr2_4:7851165-7851184 None:intergenic 45.0%
GCTGGATTTATGCAGGTATG+AGG - chr2_4:7851167-7851186 Msa0312670:intron 45.0%
TATGCAGGTATGAGGAAGCT+AGG - chr2_4:7851175-7851194 Msa0312670:intron 45.0%
ATGCAGGTATGAGGAAGCTA+GGG - chr2_4:7851176-7851195 Msa0312670:intron 45.0%
GCGAGAAGATTTCAGTGACA+TGG - chr2_4:7851221-7851240 Msa0312670:intron 45.0%
TTTCAGTGACATGGTTGCAG+AGG - chr2_4:7851230-7851249 Msa0312670:intron 45.0%
TAGCTATAACTGTTTCGGGC+AGG - chr2_4:7851507-7851526 Msa0312670:five_prime_UTR 45.0%
!!! TTATTTTACTTATATATTAT+TGG - chr2_4:7848565-7848584 Msa0312670:intron 5.0%
!!! TTAGTTTTTTTTTTTTTTTT+TGG - chr2_4:7851420-7851439 Msa0312670:exon 5.0%
TTTCCTTGATGTGAAGGCGG+TGG - chr2_4:7844071-7844090 Msa0312670:three_prime_UTR 50.0%
AATCCACCGCCTTCACATCA+AGG + chr2_4:7844077-7844096 None:intergenic 50.0%
!! GCAACGACTCCGTTTTGGTA+AGG + chr2_4:7844206-7844225 None:intergenic 50.0%
GGAGAATACTGATCCGAAGC+AGG - chr2_4:7844226-7844245 Msa0312670:CDS 50.0%
CTGTACCTGTACCTAGGCAT+TGG - chr2_4:7845333-7845352 Msa0312670:intron 50.0%
TGTGACCAATGCCTAGGTAC+AGG + chr2_4:7845341-7845360 None:intergenic 50.0%
CTCTTCTGTGACCAATGCCT+AGG + chr2_4:7845347-7845366 None:intergenic 50.0%
AACACCTACCAGTCCAGGAT+TGG + chr2_4:7845553-7845572 None:intergenic 50.0%
!! ATCCTGGACTGGTAGGTGTT+TGG - chr2_4:7845553-7845572 Msa0312670:intron 50.0%
TTCCAAACACCTACCAGTCC+AGG + chr2_4:7845558-7845577 None:intergenic 50.0%
CGTGAGATTTGCGACTCATG+AGG - chr2_4:7846162-7846181 Msa0312670:intron 50.0%
ACAGACCGTGACCGTGAAAA+TGG - chr2_4:7846186-7846205 Msa0312670:intron 50.0%
!! GTTTTGGGCAGGCCTAATTG+GGG - chr2_4:7846461-7846480 Msa0312670:intron 50.0%
!!! TTGTTTTGGCAGGGGAAACG+AGG - chr2_4:7846710-7846729 Msa0312670:CDS 50.0%
CCAGTGGCAGCAATGAAATC+AGG + chr2_4:7846761-7846780 None:intergenic 50.0%
CCTGATTTCATTGCTGCCAC+TGG - chr2_4:7846758-7846777 Msa0312670:CDS 50.0%
AAGCCAAAGCTGACATCCCT+TGG - chr2_4:7847645-7847664 Msa0312670:intron 50.0%
AGCCAAAGCTGACATCCCTT+GGG - chr2_4:7847646-7847665 Msa0312670:intron 50.0%
CTTCGTGATACAACTCCCCA+AGG + chr2_4:7847665-7847684 None:intergenic 50.0%
CTTGGGGAGTTGTATCACGA+AGG - chr2_4:7847663-7847682 Msa0312670:intron 50.0%
!! GGCCCAACGATTGATTTGTG+TGG - chr2_4:7847879-7847898 Msa0312670:intron 50.0%
GTTTGTTTCCCACCACCTGA+TGG - chr2_4:7848086-7848105 Msa0312670:intron 50.0%
GAAGAGAATGGGAGAAGGAG+AGG + chr2_4:7848256-7848275 None:intergenic 50.0%
! GATGACATTGGTTGGTGTGC+AGG - chr2_4:7848606-7848625 Msa0312670:intron 50.0%
AGAAGCTCTTGGTATGCCTG+AGG - chr2_4:7848675-7848694 Msa0312670:intron 50.0%
GAAGCTCTTGGTATGCCTGA+GGG - chr2_4:7848676-7848695 Msa0312670:intron 50.0%
TGGTGGAGGACCATATCTCT+GGG + chr2_4:7848807-7848826 None:intergenic 50.0%
! ATGGTGGAGGACCATATCTC+TGG + chr2_4:7848808-7848827 None:intergenic 50.0%
TTCAGCTGAGGGTAAGATGG+TGG + chr2_4:7848824-7848843 None:intergenic 50.0%
!! GTATGGGAGCATTCAGTCCT+GGG + chr2_4:7848850-7848869 None:intergenic 50.0%
TAACCAAAGCTAGCTCCAGC+GGG + chr2_4:7848872-7848891 None:intergenic 50.0%
! GGTTATCATCCTGGTGGATG+GGG - chr2_4:7848887-7848906 Msa0312670:intron 50.0%
! CTGGCTCTTCCTGCATAATG+AGG + chr2_4:7849571-7849590 None:intergenic 50.0%
AGAGGAAGAAGAAGAGGAGG+AGG - chr2_4:7849640-7849659 Msa0312670:intron 50.0%
GGAGGAGGAAGAAGAAGGAA+TGG - chr2_4:7849658-7849677 Msa0312670:intron 50.0%
TGGATATGCAGGTCCGACTT+AGG - chr2_4:7850129-7850148 Msa0312670:intron 50.0%
GGATATGCAGGTCCGACTTA+GGG - chr2_4:7850130-7850149 Msa0312670:intron 50.0%
CTCCCATGTCGAACCAAACA+CGG + chr2_4:7850223-7850242 None:intergenic 50.0%
! GTGTTTGGTTCGACATGGGA+GGG - chr2_4:7850222-7850241 Msa0312670:intron 50.0%
! TGTTTGGTTCGACATGGGAG+GGG - chr2_4:7850223-7850242 Msa0312670:intron 50.0%
TCGACATGGGAGGGGTTTAA+TGG - chr2_4:7850231-7850250 Msa0312670:CDS 50.0%
CACTGGCACCCAGGATAAAT+CGG - chr2_4:7850865-7850884 Msa0312670:CDS 50.0%
ACTGGCACCCAGGATAAATC+GGG - chr2_4:7850866-7850885 Msa0312670:CDS 50.0%
! AGTGGACGTCACTTTACTGC+CGG - chr2_4:7851032-7851051 Msa0312670:intron 50.0%
CACTTTACTGCCGGAAGAGT+TGG - chr2_4:7851041-7851060 Msa0312670:intron 50.0%
TCCATGGCTTCCAACTCTTC+CGG + chr2_4:7851054-7851073 None:intergenic 50.0%
! GGCAGGCAGAACATTTTCCA+TGG + chr2_4:7851070-7851089 None:intergenic 50.0%
CTAGGGAGGAAGAGAAGTTG+CGG - chr2_4:7851193-7851212 Msa0312670:intron 50.0%
TAAACCCTCGACGATGGCTG+CGG - chr2_4:7844172-7844191 Msa0312670:exon 55.0%
! TCTCCGCAACGACTCCGTTT+TGG + chr2_4:7844211-7844230 None:intergenic 55.0%
TGCAGCAGATCCCAAGTTGC+TGG - chr2_4:7845286-7845305 Msa0312670:intron 55.0%
ATGTGGTTCTTGCAGGGGAG+CGG - chr2_4:7845515-7845534 Msa0312670:intron 55.0%
!! GTCACCAATCCTGGACTGGT+AGG - chr2_4:7845546-7845565 Msa0312670:intron 55.0%
GCCAAAGCTGACATCCCTTG+GGG - chr2_4:7847647-7847666 Msa0312670:intron 55.0%
TCCCCAAGGGATGTCAGCTT+TGG + chr2_4:7847651-7847670 None:intergenic 55.0%
GGTGGAGGACCATATCTCTG+GGG + chr2_4:7848806-7848825 None:intergenic 55.0%
! AGCTGAGGGTAAGATGGTGG+AGG + chr2_4:7848821-7848840 None:intergenic 55.0%
TACCCTCAGCTGAAGATCCC+AGG - chr2_4:7848830-7848849 Msa0312670:CDS 55.0%
GTCCTGGGATCTTCAGCTGA+GGG + chr2_4:7848835-7848854 None:intergenic 55.0%
AGTCCTGGGATCTTCAGCTG+AGG + chr2_4:7848836-7848855 None:intergenic 55.0%
!! GGTATGGGAGCATTCAGTCC+TGG + chr2_4:7848851-7848870 None:intergenic 55.0%
AAGCTAGCTCCAGCGGGTAT+GGG + chr2_4:7848866-7848885 None:intergenic 55.0%
AAAGCTAGCTCCAGCGGGTA+TGG + chr2_4:7848867-7848886 None:intergenic 55.0%
! ATACCCGCTGGAGCTAGCTT+TGG - chr2_4:7848866-7848885 Msa0312670:intron 55.0%
CAGTATGGACGCCCACTGTA+TGG - chr2_4:7849009-7849028 Msa0312670:intron 55.0%
! ACACTGGGGTGATTTGGAGG+AGG - chr2_4:7849604-7849623 Msa0312670:intron 55.0%
! TGATTTGGAGGAGGAGGAGG+AGG - chr2_4:7849613-7849632 Msa0312670:intron 55.0%
GGAAGAAGAAGAGGAGGAGG+AGG - chr2_4:7849643-7849662 Msa0312670:intron 55.0%
GAGGAGGAGGAGGAAGAAGA+AGG - chr2_4:7849623-7849642 Msa0312670:intron 55.0%
! GGTGCTGGGTTAGAGAGATG+TGG - chr2_4:7850059-7850078 Msa0312670:intron 55.0%
GGTCCGACTTAGGGTCTGTT+AGG - chr2_4:7850139-7850158 Msa0312670:intron 55.0%
! CGTGTTTGGTTCGACATGGG+AGG - chr2_4:7850221-7850240 Msa0312670:intron 55.0%
TCAGGTGTCTCCACTCCAGT+AGG + chr2_4:7850515-7850534 None:intergenic 55.0%
CAGGTATGAGGAAGCTAGGG+AGG - chr2_4:7851179-7851198 Msa0312670:intron 55.0%
GGACGGCAAGTCGAAGAAGA+AGG - chr2_4:7851387-7851406 Msa0312670:CDS 55.0%
GTTACCGCAGCCATCGTCGA+GGG + chr2_4:7844179-7844198 None:intergenic 60.0%
TGTTACCGCAGCCATCGTCG+AGG + chr2_4:7844180-7844199 None:intergenic 60.0%
GCTGTGGCAGTCACCAATCC+TGG - chr2_4:7845537-7845556 Msa0312670:intron 60.0%
GGCAGTCACCAATCCTGGAC+TGG - chr2_4:7845542-7845561 Msa0312670:intron 60.0%
CTGAATGCTCCCATACCCGC+TGG - chr2_4:7848854-7848873 Msa0312670:CDS 60.0%
! CTGGGGTGATTTGGAGGAGG+AGG - chr2_4:7849607-7849626 Msa0312670:intron 60.0%
! GGGTGATTTGGAGGAGGAGG+AGG - chr2_4:7849610-7849629 Msa0312670:intron 60.0%
GGAGGAGGAGGAGGAAGAAG+AGG - chr2_4:7849622-7849641 Msa0312670:intron 60.0%
GCTCAGCACTCCTACTGGAG+TGG - chr2_4:7850502-7850521 Msa0312670:intron 60.0%
GCCGGAAGAGTTGGAAGCCA+TGG - chr2_4:7851050-7851069 Msa0312670:intron 60.0%
TTCTTGCAGGGGAGCGGCTG+TGG - chr2_4:7845521-7845540 Msa0312670:intron 65.0%
!! CATGGAGGAGGAGCACCCTC+AGG + chr2_4:7848694-7848713 None:intergenic 65.0%
!! CTGAGGGTGCTCCTCCTCCA+TGG - chr2_4:7848692-7848711 Msa0312670:intron 65.0%
!! TGTGGTTGGCACTGGCACCC+AGG - chr2_4:7850856-7850875 Msa0312670:CDS 65.0%
GGAGGCTTGCCCCATCCACC+AGG + chr2_4:7848899-7848918 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 7844070 7851535 7844070 ID=Msa0312670;Name=Msa0312670
chr2_4 mRNA 7844070 7851535 7844070 ID=Msa0312670-mRNA-1;Parent=Msa0312670;Name=Msa0312670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=115|0.94|0.94|1|1|1|18|112|539
chr2_4 exon 7844070 7844253 7844070 ID=Msa0312670-mRNA-1:exon:3081;Parent=Msa0312670-mRNA-1
chr2_4 exon 7844354 7844423 7844354 ID=Msa0312670-mRNA-1:exon:3080;Parent=Msa0312670-mRNA-1
chr2_4 exon 7844514 7844605 7844514 ID=Msa0312670-mRNA-1:exon:3079;Parent=Msa0312670-mRNA-1
chr2_4 exon 7844707 7844782 7844707 ID=Msa0312670-mRNA-1:exon:3078;Parent=Msa0312670-mRNA-1
chr2_4 exon 7844862 7844920 7844862 ID=Msa0312670-mRNA-1:exon:3077;Parent=Msa0312670-mRNA-1
chr2_4 exon 7845013 7845097 7845013 ID=Msa0312670-mRNA-1:exon:3076;Parent=Msa0312670-mRNA-1
chr2_4 exon 7845876 7846024 7845876 ID=Msa0312670-mRNA-1:exon:3075;Parent=Msa0312670-mRNA-1
chr2_4 exon 7846531 7846593 7846531 ID=Msa0312670-mRNA-1:exon:3074;Parent=Msa0312670-mRNA-1
chr2_4 exon 7846677 7846796 7846677 ID=Msa0312670-mRNA-1:exon:3073;Parent=Msa0312670-mRNA-1
chr2_4 exon 7846876 7846977 7846876 ID=Msa0312670-mRNA-1:exon:3072;Parent=Msa0312670-mRNA-1
chr2_4 exon 7847907 7847993 7847907 ID=Msa0312670-mRNA-1:exon:3071;Parent=Msa0312670-mRNA-1
chr2_4 exon 7848120 7848212 7848120 ID=Msa0312670-mRNA-1:exon:3070;Parent=Msa0312670-mRNA-1
chr2_4 exon 7848806 7848883 7848806 ID=Msa0312670-mRNA-1:exon:3069;Parent=Msa0312670-mRNA-1
chr2_4 exon 7850226 7850333 7850226 ID=Msa0312670-mRNA-1:exon:3068;Parent=Msa0312670-mRNA-1
chr2_4 exon 7850432 7850494 7850432 ID=Msa0312670-mRNA-1:exon:3067;Parent=Msa0312670-mRNA-1
chr2_4 exon 7850599 7850730 7850599 ID=Msa0312670-mRNA-1:exon:3066;Parent=Msa0312670-mRNA-1
chr2_4 exon 7850835 7850942 7850835 ID=Msa0312670-mRNA-1:exon:3065;Parent=Msa0312670-mRNA-1
chr2_4 exon 7851358 7851535 7851358 ID=Msa0312670-mRNA-1:exon:3064;Parent=Msa0312670-mRNA-1
chr2_4 five_prime_UTR 7851421 7851535 7851421 ID=Msa0312670-mRNA-1:five_prime_utr;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7851358 7851420 7851358 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7850835 7850942 7850835 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7850599 7850730 7850599 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7850432 7850494 7850432 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7850226 7850333 7850226 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7848806 7848883 7848806 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7848120 7848212 7848120 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7847907 7847993 7847907 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7846876 7846977 7846876 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7846677 7846796 7846677 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7846531 7846593 7846531 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7845876 7846024 7845876 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7845013 7845097 7845013 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7844862 7844920 7844862 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7844707 7844782 7844707 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7844514 7844605 7844514 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7844354 7844423 7844354 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 CDS 7844182 7844253 7844182 ID=Msa0312670-mRNA-1:cds;Parent=Msa0312670-mRNA-1
chr2_4 three_prime_UTR 7844070 7844181 7844070 ID=Msa0312670-mRNA-1:three_prime_utr;Parent=Msa0312670-mRNA-1
Gene Sequence

>Msa0312670

ATGGCTGCGGTAACACTTCCTTACCAAAACGGAGTCGTTGCGGAGAATACTGATCCGAAGCAGGTTTTTGAACAAGTTGAAATTGAGTATGTACCAGAGAAGGTAGACTTTGAAGGCATGGATGAAGAATTTAGAAAAATATTTGAGAAATTTAGTTTCACTGCTTCAGAGGAAATTGATAAGAAGGATGAGGTGGAGGAAACTGCAGCTACTAAAAAGAAAGCTAATTCTGATTCTGATTCTGATCATGAAGAAAATGATAACGAGCAAAAAGAAAAAGGCGTATCAAACAAGAAGAAAAAGCTTCAACGAAGAATGAAAATTGCTGAACTGAAACAAGTTAGCTCAAGACCTGATGTTGTTGAGGTTTGGGATGCTACTGCAGCAGATCCCAAGTTGCTGGTGTTTTTGAAATCTTATCGTAACACTGTACCTGTACCTAGGCATTGGTCACAGAAGAGAAAATTTTTGCAGGGGAAACGAGGTATTGAGAAACAACCCTTTCAACTTCCTGATTTCATTGCTGCCACTGGTATTGAGAAAATCAGACAGGCTTATATTGAGAAAGAGGACAGTAAGAAGTTGAAACAAAAGCAAAGGGAACGTATGCAACCAAAAATGGGAAAAATGGATATAGATTATCAGGTCCTTCATGATGCATTTTTTAAGTACCAAACAAAGCCAAAGCTGACATCCCTTGGGGAGTTGTATCACGAAGGAAAAGAATTTGAGGTAAAGTTGAGGGAGATGAAACCTGGTATGTTATCACACGACTTGAAAGAAGCTCTTGGTATGCCTGAGGGTGCTCCTCCTCCATGGCTTATTAATATGCAGAGATATGGTCCTCCACCATCTTACCCTCAGCTGAAGATCCCAGGACTGAATGCTCCCATACCCGCTGGAGCTAGCTTTGGTTATCATCCTGGTGGATGGGGCAAGCCTCCTGTCGACGAATATGGACGCCCACTGTATGGAGATGTTTTTGGTGTTCAACAACAAGATCAGCCTAACTATGAGGAAGAGCCAGTTGATAAGACTAAACACTGGGGTGATTTGGAGGAGGAGGAGGAGGAAGAAGAGGAAGAAGAAGAGGAGGAGGAGGAAGAAGAAGGAATGGAAGAGGAGGAATTTGAAGATGGTGTTCAGTCTGTTGATAGTCTATCAAGCACTCCTACTGGAGTGGAGACACCTGATGTTATTGACCTACGGAAGCAACAGAGAAATAAGGAGCCTGAGAGGCCTCTTTATCAAGTGCTTGAAGAGAAAGAAGAAAAAATTGGTGCAGGATCTTTACTTGTACCCGGACACACTTCTGACGCTTCCTTTTCTCCTCTCTGTAGTTATGTGGTTGGCACTGGCACCCAGGATAAATCGGGTGCTAAAAGGGTCGATTTGCTTAAAGGTCAAAAGTCAGATAAAGTGGACGTCACTTTACTGCCGGAAGAGTTGGAAGCCATGGAAAATGTTCTGCCTGCCAAGTATGAGGAAGCTAGGGAGGAAGAGAAGTTGCGGAGTCAGCGAGAAGATTTCAGTGACATGGTTGCAGAGAATGAGAAGAAAAGAAAAAGAAAGATGCAAGAAAAGGACGGCAAGTCGAAGAAGAAGGACTTTAAGTTTTAG

Protein sequence

>Msa0312670

MAAVTLPYQNGVVAENTDPKQVFEQVEIEYVPEKVDFEGMDEEFRKIFEKFSFTASEEIDKKDEVEETAATKKKANSDSDSDHEENDNEQKEKGVSNKKKKLQRRMKIAELKQVSSRPDVVEVWDATAADPKLLVFLKSYRNTVPVPRHWSQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKPGMLSHDLKEALGMPEGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPAGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQDQPNYEEEPVDKTKHWGDLEEEEEEEEEEEEEEEEEEGMEEEEFEDGVQSVDSLSSTPTGVETPDVIDLRKQQRNKEPERPLYQVLEEKEEKIGAGSLLVPGHTSDASFSPLCSYVVGTGTQDKSGAKRVDLLKGQKSDKVDVTLLPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEKDGKSKKKDFKF*