AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861570 MtrunA17_Chr5g0395301 99.222 257 2 0 1 257 1 257 0.0 524
Msa0861570 MtrunA17_Chr5g0448431 28.289 152 86 3 17 168 14 142 9.47e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861570 AT5G16800.2 59.459 259 101 2 1 257 14 270 7.25e-107 310
Msa0861570 AT5G16800.3 56.870 262 106 3 1 257 14 273 1.60e-97 286
Msa0861570 AT5G16800.1 61.062 226 82 1 1 226 14 233 6.51e-96 281
Msa0861570 AT3G02980.1 60.181 221 87 1 12 232 25 244 7.60e-95 279
Msa0861570 AT3G02980.2 55.333 150 66 1 83 232 26 174 2.36e-56 178
Msa0861570 AT5G11340.1 27.607 163 94 4 17 179 14 152 2.98e-14 68.9

Find 83 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTATCAAGTGTTAAA+TGG 0.185040 5_4:-60922927 Msa0861570:five_prime_UTR
TTGATTGACTAGACCCTTTC+GGG 0.206622 5_4:+60922794 None:intergenic
CTGTTGATTATTGTCGTAAT+TGG 0.221186 5_4:-60919819 Msa0861570:three_prime_UTR
TTATTCGTGCACTACGTAAA+TGG 0.221441 5_4:-60920793 Msa0861570:CDS
CTACGTGAAGAGTGGCTTTA+AGG 0.221630 5_4:-60920258 Msa0861570:CDS
ACATACAGTAAGTATAATTT+TGG 0.231091 5_4:+60920021 None:intergenic
GGCCAAAGTGATGAACTTAT+TGG 0.280025 5_4:-60922529 Msa0861570:CDS
AACAATCATCATAATCTTCT+TGG 0.297967 5_4:-60923301 Msa0861570:intron
GGGAGTAGTGGAAGCATATA+GGG 0.323949 5_4:-60921091 Msa0861570:CDS
CAGAGTAGTGACAATGAAAA+AGG 0.325536 5_4:+60922904 None:intergenic
TTTGATTGACTAGACCCTTT+CGG 0.334623 5_4:+60922793 None:intergenic
CACTAAAGTCTGGTCAGATT+TGG 0.334799 5_4:+60921128 None:intergenic
TATTCGTGCACTACGTAAAT+GGG 0.359781 5_4:-60920792 Msa0861570:CDS
TGGGAGTAGTGGAAGCATAT+AGG 0.379806 5_4:-60921092 Msa0861570:CDS
GCATATAGGGGCCTTGGAAT+AGG 0.403458 5_4:-60921078 Msa0861570:intron
AGTATTATCTTCTATAAGAA+TGG 0.411563 5_4:+60919883 None:intergenic
CACCAGCTTCTTCTTTGATA+CGG 0.412039 5_4:-60920981 Msa0861570:intron
ATGTGTGTGGCCTACAGTTT+TGG 0.417271 5_4:+60919957 None:intergenic
TCAAAATCAGACGGTCGTAT+AGG 0.418162 5_4:+60922757 None:intergenic
ATGGTAGATTATTTCCCATC+AGG 0.419207 5_4:-60922717 Msa0861570:intron
GTGGAAGCATATAGGGGCCT+TGG 0.421160 5_4:-60921084 Msa0861570:CDS
AGTTCATCACTTTGGCCATT+CGG 0.428159 5_4:+60922535 None:intergenic
CATTGTCACTACTCTGTGAA+TGG 0.432482 5_4:-60922897 Msa0861570:five_prime_UTR
TGGAAGTGGTTGTTGATGCT+TGG 0.446825 5_4:-60922877 Msa0861570:five_prime_UTR
ACCAGCTTCTTCTTTGATAC+GGG 0.449831 5_4:-60920980 Msa0861570:intron
CTATTCTGTCAGAATAAACT+TGG 0.453739 5_4:-60919996 Msa0861570:three_prime_UTR
CAAGTGTGTTAGAAAGCTGC+AGG 0.455738 5_4:-60920854 Msa0861570:CDS
ATTATGATGATTGTTTCGTT+CGG 0.467301 5_4:+60923309 None:intergenic
ATCCAATAAGTTCATCACTT+TGG 0.471996 5_4:+60922527 None:intergenic
AAATGAAAGAACATAGAGAA+GGG 0.480347 5_4:-60923392 Msa0861570:five_prime_UTR
AGCTGTGCAAGAACGAAGTT+AGG 0.483514 5_4:-60920223 Msa0861570:CDS
TGCACTTACAATGGCGAGCA+AGG 0.487162 5_4:+60920760 None:intergenic
TAAGTGGAAATAACGATCAA+TGG 0.489757 5_4:-60922821 Msa0861570:exon
GATCACAGCAAGTAGCGAAA+TGG 0.489793 5_4:+60923331 None:intergenic
TAAGTGTGATTGAATAGTAC+AGG 0.496458 5_4:+60920064 None:intergenic
AACTTCGTTCTTGCACAGCT+TGG 0.497962 5_4:+60920226 None:intergenic
GTATTATCTTCTATAAGAAT+GGG 0.503576 5_4:+60919884 None:intergenic
CAAATTATTTGACCATGGGT+TGG 0.512806 5_4:-60919909 Msa0861570:three_prime_UTR
TTGTAGATAGTGGATTTGCT+TGG 0.513932 5_4:-60921162 Msa0861570:intron
CGAAGATGTGGTGAACAGAC+GGG 0.516575 5_4:-60922593 Msa0861570:CDS
CACTACTCTGTGAATGGAAG+TGG 0.518401 5_4:-60922891 Msa0861570:five_prime_UTR
TTTAGTGTATGTTCTAACAC+TGG 0.518861 5_4:-60921112 Msa0861570:CDS
TTAGAACATACACTAAAGTC+TGG 0.520023 5_4:+60921118 None:intergenic
TTAACAAATTATTTGACCAT+GGG 0.522271 5_4:-60919913 Msa0861570:three_prime_UTR
TTGAGAGTGAGACAAGAGAA+TGG 0.529226 5_4:+60920168 None:intergenic
GATCAATGGTAAACCCGAAA+GGG 0.533764 5_4:-60922807 Msa0861570:exon
TTTAACAAATTATTTGACCA+TGG 0.535676 5_4:-60919914 Msa0861570:three_prime_UTR
TCGAAGATGTGGTGAACAGA+CGG 0.541792 5_4:-60922594 Msa0861570:CDS
CAGACGGGATATTGTGTCGT+GGG 0.543303 5_4:-60922578 Msa0861570:CDS
ACTTATAATTCTCACTAGAA+AGG 0.552289 5_4:-60920046 Msa0861570:three_prime_UTR
TGTTCTAACACTGGGAGTAG+TGG 0.563129 5_4:-60921103 Msa0861570:CDS
GAAATGAAAGAACATAGAGA+AGG 0.570309 5_4:-60923393 Msa0861570:five_prime_UTR
TGTTCTTGCAAAAGAAAGTG+AGG 0.573579 5_4:-60922488 Msa0861570:intron
GAAGAGTGGCTTTAAGGCAG+TGG 0.581385 5_4:-60920252 Msa0861570:CDS
AACATGGCAGTCGAGTCTAC+TGG 0.586352 5_4:-60920128 Msa0861570:CDS
CGATCAATGGTAAACCCGAA+AGG 0.590054 5_4:-60922808 Msa0861570:exon
TTGGCAGAAGTAGTAAGAGT+AGG 0.590269 5_4:-60919800 None:intergenic
ATGAAAGAACATAGAGAAGG+GGG 0.591351 5_4:-60923390 Msa0861570:five_prime_UTR
AGCTTCTTCTTTGATACGGG+AGG 0.591740 5_4:-60920977 Msa0861570:CDS
ACAAACTGCTACCTATTCCA+AGG 0.593056 5_4:+60921067 None:intergenic
TTAGTGTATGTTCTAACACT+GGG 0.599355 5_4:-60921111 Msa0861570:CDS
TTTGTAAGCTACGTGAAGAG+TGG 0.599551 5_4:-60920266 Msa0861570:CDS
ACACGATGATCTCACCTGAT+GGG 0.613102 5_4:+60922703 None:intergenic
ATTCGTGCACTACGTAAATG+GGG 0.616046 5_4:-60920791 Msa0861570:CDS
AGAGATGACACCAAAACTGT+AGG 0.623611 5_4:-60919967 Msa0861570:three_prime_UTR
GTTGATCTTAGTCGACCGAA+TGG 0.627310 5_4:-60922550 Msa0861570:CDS
ACGAAGTTAGGAAGATCTCA+AGG 0.631340 5_4:-60920211 Msa0861570:CDS
AATGAAAGAACATAGAGAAG+GGG 0.634502 5_4:-60923391 Msa0861570:five_prime_UTR
AGTTAGGAAGATCTCAAGGT+GGG 0.635024 5_4:-60920207 Msa0861570:CDS
GGAGTAGTGGAAGCATATAG+GGG 0.641948 5_4:-60921090 Msa0861570:CDS
TAAGAATGGGAGCCAACCCA+TGG 0.644300 5_4:+60919897 None:intergenic
AAGTGTGTTAGAAAGCTGCA+GGG 0.647080 5_4:-60920853 Msa0861570:CDS
TTCGTGCACTACGTAAATGG+GGG 0.654674 5_4:-60920790 Msa0861570:CDS
ACAGACGGGATATTGTGTCG+TGG 0.662598 5_4:-60922579 Msa0861570:CDS
TCACGTGCAAGTAAACCGCT+CGG 0.669384 5_4:+60920923 None:intergenic
AAGCATTCCAACGTGCCGAG+CGG 0.675262 5_4:-60920938 Msa0861570:CDS
ACAGCAAGTAGCGAAATGGA+AGG 0.676149 5_4:+60923335 None:intergenic
AGACGGGATATTGTGTCGTG+GGG 0.679193 5_4:-60922577 Msa0861570:CDS
AATACCCAACAAAAGAAACA+TGG 0.688655 5_4:-60920144 Msa0861570:CDS
TCTAAAACGTCAAAATCAGA+CGG 0.689832 5_4:+60922748 None:intergenic
AAGTAAACCGCTCGGCACGT+TGG 0.692398 5_4:+60920931 None:intergenic
AAGTTAGGAAGATCTCAAGG+TGG 0.739682 5_4:-60920208 Msa0861570:CDS
TTATTGGATTTGTAACAGCG+CGG 0.789219 5_4:-60922513 Msa0861570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTATTTATTTTAATATTCT+TGG - chr5_4:60921189-60921208 Msa0861570:intron 10.0%
!!! TTCTGAAAATTTTGTTTATT+TGG - chr5_4:60920234-60920253 Msa0861570:CDS 15.0%
!!! ATTTACTTGTTTTCTATAAA+GGG - chr5_4:60920859-60920878 Msa0861570:CDS 15.0%
!! TTAAAATAAATACTCCAAAT+GGG + chr5_4:60921183-60921202 None:intergenic 15.0%
!! ATTAAAATAAATACTCCAAA+TGG + chr5_4:60921184-60921203 None:intergenic 15.0%
!!! ATTTATTTTAATATTCTTGG+AGG - chr5_4:60921192-60921211 Msa0861570:intron 15.0%
!! ATATTGAAGTCTAATAAATT+CGG + chr5_4:60922788-60922807 None:intergenic 15.0%
!!! TTCCTTTTATCTATAAAAAA+CGG - chr5_4:60922846-60922865 Msa0861570:five_prime_UTR 15.0%
!! TGCATACAGTTATATATAAA+GGG + chr5_4:60920735-60920754 None:intergenic 20.0%
!! ATGCATACAGTTATATATAA+AGG + chr5_4:60920736-60920755 None:intergenic 20.0%
!!! GATTTACTTGTTTTCTATAA+AGG - chr5_4:60920858-60920877 Msa0861570:CDS 20.0%
!!! TTTACTTGTTTTCTATAAAG+GGG - chr5_4:60920860-60920879 Msa0861570:CDS 20.0%
!! TTGAAATATTACATCAAACA+TGG + chr5_4:60921049-60921068 None:intergenic 20.0%
!! ACTACAATATATATTCCTAA+TGG + chr5_4:60921309-60921328 None:intergenic 20.0%
!! ATTAGGAATATATATTGTAG+TGG - chr5_4:60921308-60921327 Msa0861570:intron 20.0%
!!! CATTTTGATTATAACTTCTA+TGG - chr5_4:60921349-60921368 Msa0861570:intron 20.0%
!!! CTACAGCATATATTTTTAAT+AGG + chr5_4:60921402-60921421 None:intergenic 20.0%
!!! TTTTTCATAACAAGTTGTAT+TGG - chr5_4:60921630-60921649 Msa0861570:intron 20.0%
!!! TTTTCATAACAAGTTGTATT+GGG - chr5_4:60921631-60921650 Msa0861570:intron 20.0%
!!! AAAAAAAAAAGAGTATTGTC+TGG + chr5_4:60921722-60921741 None:intergenic 20.0%
!! TTATTCACCAATTTATCAAT+TGG - chr5_4:60921839-60921858 Msa0861570:intron 20.0%
!! TATAACACCAATTGATAAAT+TGG + chr5_4:60921849-60921868 None:intergenic 20.0%
!! AATAAACAATTATCAGCAAA+AGG + chr5_4:60921991-60922010 None:intergenic 20.0%
!! AATATTATTCTTGTAGATAG+TGG - chr5_4:60922019-60922038 Msa0861570:intron 20.0%
!! ATAAAAATGAATCATAGTGT+TGG + chr5_4:60922382-60922401 None:intergenic 20.0%
!!! TAAAGAATACAAAACCTTTT+TGG + chr5_4:60922637-60922656 None:intergenic 20.0%
!!! TTCCGTTTTTTATAGATAAA+AGG + chr5_4:60922851-60922870 None:intergenic 20.0%
!! ATGGAAAATAAAATTCTCTA+AGG + chr5_4:60922877-60922896 None:intergenic 20.0%
!!! ACATACAGTAAGTATAATTT+TGG + chr5_4:60923173-60923192 None:intergenic 20.0%
!! TTTAACAAATTATTTGACCA+TGG - chr5_4:60923277-60923296 Msa0861570:intron 20.0%
!! TTAACAAATTATTTGACCAT+GGG - chr5_4:60923278-60923297 Msa0861570:intron 20.0%
!! GTATTATCTTCTATAAGAAT+GGG + chr5_4:60923310-60923329 None:intergenic 20.0%
!! AGTATTATCTTCTATAAGAA+TGG + chr5_4:60923311-60923330 None:intergenic 20.0%
! ATTATGATGATTGTTTCGTT+CGG + chr5_4:60919885-60919904 None:intergenic 25.0%
! AACAATCATCATAATCTTCT+TGG - chr5_4:60919890-60919909 Msa0861570:three_prime_UTR 25.0%
!!! TAATTTTAACAAACACGTGA+TGG + chr5_4:60919936-60919955 None:intergenic 25.0%
! ATCTACTATCATTCATTTCT+AGG - chr5_4:60920056-60920075 Msa0861570:three_prime_UTR 25.0%
! TGCAATTATCAAGTGTTAAA+TGG - chr5_4:60920264-60920283 Msa0861570:CDS 25.0%
!! GATATTTTCTGTGAATTAAG+TGG - chr5_4:60920354-60920373 Msa0861570:intron 25.0%
! GTCAATCAAAAATATGCTAT+CGG - chr5_4:60920411-60920430 Msa0861570:intron 25.0%
! TTAAGATGTTTATGAATCTC+AGG - chr5_4:60920558-60920577 Msa0861570:intron 25.0%
! GCATACAGTTATATATAAAG+GGG + chr5_4:60920734-60920753 None:intergenic 25.0%
!! ACATAACACATACTTTGTTT+GGG + chr5_4:60920937-60920956 None:intergenic 25.0%
!! AGATTGATAGACTCAAATTT+TGG + chr5_4:60921010-60921029 None:intergenic 25.0%
! TTTATGAGTAGTTATCCATT+AGG - chr5_4:60921291-60921310 Msa0861570:intron 25.0%
! ATCGAATGAGATAGTTTAAT+CGG + chr5_4:60921938-60921957 None:intergenic 25.0%
! GTTAAACTAAGAATTACAGA+GGG + chr5_4:60921969-60921988 None:intergenic 25.0%
! TAGATTACCAATCATATTAC+TGG + chr5_4:60922177-60922196 None:intergenic 25.0%
! TCAAAACGATTATTTGACAT+TGG - chr5_4:60922726-60922745 Msa0861570:CDS 25.0%
! TCAATATTGATGTATACTTG+TGG - chr5_4:60922801-60922820 Msa0861570:CDS 25.0%
! ACTTATAATTCTCACTAGAA+AGG - chr5_4:60923145-60923164 Msa0861570:intron 25.0%
!! TTTTACATTGTATATGTGTG+TGG + chr5_4:60923250-60923269 None:intergenic 25.0%
! ACAACAATTGACTCAAATCT+TGG + chr5_4:60920156-60920175 None:intergenic 30.0%
TAAGTGGAAATAACGATCAA+TGG - chr5_4:60920370-60920389 Msa0861570:intron 30.0%
! TCTAAAACGTCAAAATCAGA+CGG + chr5_4:60920446-60920465 None:intergenic 30.0%
ATCCAATAAGTTCATCACTT+TGG + chr5_4:60920667-60920686 None:intergenic 30.0%
GACATAACACATACTTTGTT+TGG + chr5_4:60920938-60920957 None:intergenic 30.0%
ATGTGTTATGTCTATGTTCA+AGG - chr5_4:60920946-60920965 Msa0861570:CDS 30.0%
!! AGACTCAAATTTTGGTATCA+AGG + chr5_4:60921002-60921021 None:intergenic 30.0%
!! TGATCCTTTTATTAGTCTGA+TGG - chr5_4:60921099-60921118 Msa0861570:CDS 30.0%
!! GATCCTTTTATTAGTCTGAT+GGG - chr5_4:60921100-60921119 Msa0861570:CDS 30.0%
TAAGCTAATGGAACATTATC+AGG + chr5_4:60921144-60921163 None:intergenic 30.0%
!!! TTAGTTGGGTTTTAAGCTAA+TGG + chr5_4:60921156-60921175 None:intergenic 30.0%
AAATAAATACTCCAAATGGG+AGG + chr5_4:60921180-60921199 None:intergenic 30.0%
AACTTCTATGGTGACAATTA+TGG - chr5_4:60921361-60921380 Msa0861570:intron 30.0%
ACTTCTATGGTGACAATTAT+GGG - chr5_4:60921362-60921381 Msa0861570:intron 30.0%
CTGTGTTTATGTTGTAAGTT+TGG - chr5_4:60921562-60921581 Msa0861570:intron 30.0%
!! ACAACTTGTTATGAAAAACC+AGG + chr5_4:60921628-60921647 None:intergenic 30.0%
ATTGTGTGATTCAATTGCAT+TGG - chr5_4:60921659-60921678 Msa0861570:intron 30.0%
AACTTACAATTCACACAAAC+TGG + chr5_4:60921696-60921715 None:intergenic 30.0%
GTTTGTGTGAATTGTAAGTT+TGG - chr5_4:60921696-60921715 Msa0861570:intron 30.0%
CAAGCAATACAACTAAGAAA+AGG + chr5_4:60921797-60921816 None:intergenic 30.0%
TTGAGTAAGTCATTACCTAA+TGG + chr5_4:60921899-60921918 None:intergenic 30.0%
GGTTAAACTAAGAATTACAG+AGG + chr5_4:60921970-60921989 None:intergenic 30.0%
TTAGAACATACACTAAAGTC+TGG + chr5_4:60922076-60922095 None:intergenic 30.0%
TTTAGTGTATGTTCTAACAC+TGG - chr5_4:60922079-60922098 Msa0861570:intron 30.0%
TTAGTGTATGTTCTAACACT+GGG - chr5_4:60922080-60922099 Msa0861570:intron 30.0%
TTACCAATCATATTACTGGA+GGG + chr5_4:60922173-60922192 None:intergenic 30.0%
ATTACCAATCATATTACTGG+AGG + chr5_4:60922174-60922193 None:intergenic 30.0%
!!! CAGGGCTTTTATTTTATCAA+TGG - chr5_4:60922356-60922375 Msa0861570:intron 30.0%
GAAAGATATTGCACTTACAA+TGG + chr5_4:60922443-60922462 None:intergenic 30.0%
TTGTAGTATTACTCCTTAAC+TGG - chr5_4:60922564-60922583 Msa0861570:CDS 30.0%
TGTAGTATTACTCCTTAACT+GGG - chr5_4:60922565-60922584 Msa0861570:CDS 30.0%
TTGGTTCAACTTCATTACTT+TGG + chr5_4:60922618-60922637 None:intergenic 30.0%
GTAATGAAGTTGAACCAAAA+AGG - chr5_4:60922620-60922639 Msa0861570:intron 30.0%
AGATAAAAGGAACCACAAAA+AGG + chr5_4:60922838-60922857 None:intergenic 30.0%
! AAGCTGTCTGAAATATGAAA+TGG + chr5_4:60922896-60922915 None:intergenic 30.0%
AATACCCAACAAAAGAAACA+TGG - chr5_4:60923047-60923066 Msa0861570:intron 30.0%
ACAGGAAAAAGAAAACTAAC+AGG + chr5_4:60923112-60923131 None:intergenic 30.0%
TAAGTGTGATTGAATAGTAC+AGG + chr5_4:60923130-60923149 None:intergenic 30.0%
CTATTCTGTCAGAATAAACT+TGG - chr5_4:60923195-60923214 Msa0861570:intron 30.0%
! CTGTTGATTATTGTCGTAAT+TGG - chr5_4:60923372-60923391 Msa0861570:five_prime_UTR 30.0%
ATGAAAGAACATAGAGAAGG+GGG - chr5_4:60919801-60919820 Msa0861570:three_prime_UTR 35.0%
CAGAGTAGTGACAATGAAAA+AGG + chr5_4:60920290-60920309 None:intergenic 35.0%
TTTGATTGACTAGACCCTTT+CGG + chr5_4:60920401-60920420 None:intergenic 35.0%
ATGGTAGATTATTTCCCATC+AGG - chr5_4:60920474-60920493 Msa0861570:intron 35.0%
!!! ATCTGCTTTTTTCGAAGATG+TGG - chr5_4:60920586-60920605 Msa0861570:intron 35.0%
TTATTGGATTTGTAACAGCG+CGG - chr5_4:60920678-60920697 Msa0861570:intron 35.0%
TGTTCTTGCAAAAGAAAGTG+AGG - chr5_4:60920703-60920722 Msa0861570:intron 35.0%
TTACTACTCTGTGGAAAGTA+TGG - chr5_4:60920818-60920837 Msa0861570:CDS 35.0%
TTAAGCAGACAGTGTAAACT+AGG + chr5_4:60921073-60921092 None:intergenic 35.0%
GTTCCCATCAGACTAATAAA+AGG + chr5_4:60921106-60921125 None:intergenic 35.0%
!! TATCAGGTCCATTTAGTTCT+TGG + chr5_4:60921128-60921147 None:intergenic 35.0%
ACTTATGATTCACTTATGCG+TGG - chr5_4:60921238-60921257 Msa0861570:intron 35.0%
TGAAACCGGGAAGAAAAAAA+AGG - chr5_4:60921518-60921537 Msa0861570:intron 35.0%
!!! CACTACCTTTTTTTTCTTCC+CGG + chr5_4:60921526-60921545 None:intergenic 35.0%
CAGAATATCAGAATACTCTC+TGG - chr5_4:60921586-60921605 Msa0861570:intron 35.0%
ATATCAGAATACTCTCTGGT+AGG - chr5_4:60921590-60921609 Msa0861570:intron 35.0%
TAAGTAGACAGAGAATACGT+AGG - chr5_4:60921751-60921770 Msa0861570:intron 35.0%
CGTAGGAGTAATACGAATTT+CGG - chr5_4:60921768-60921787 Msa0861570:intron 35.0%
!! GGTGTTATATCCTAGTCTTT+TGG - chr5_4:60921860-60921879 Msa0861570:intron 35.0%
ACTATCTCATTCGATAGAGT+AGG - chr5_4:60921943-60921962 Msa0861570:intron 35.0%
!! TTGTAGATAGTGGATTTGCT+TGG - chr5_4:60922029-60922048 Msa0861570:intron 35.0%
TTATTCGTGCACTACGTAAA+TGG - chr5_4:60922398-60922417 Msa0861570:intron 35.0%
TATTCGTGCACTACGTAAAT+GGG - chr5_4:60922399-60922418 Msa0861570:intron 35.0%
TCAGTCAGAATATAACAGCA+GGG + chr5_4:60922476-60922495 None:intergenic 35.0%
ATCAGTCAGAATATAACAGC+AGG + chr5_4:60922477-60922496 None:intergenic 35.0%
TTACTCCTTAACTGGGATAT+AGG - chr5_4:60922572-60922591 Msa0861570:CDS 35.0%
CAAAACCTATATCCCAGTTA+AGG + chr5_4:60922580-60922599 None:intergenic 35.0%
GAAACTGAAACCTAGTTAGA+CGG + chr5_4:60922766-60922785 None:intergenic 35.0%
! ACTGCCATGTTTCTTTTGTT+GGG + chr5_4:60923054-60923073 None:intergenic 35.0%
CAAATTATTTGACCATGGGT+TGG - chr5_4:60923282-60923301 Msa0861570:intron 35.0%
CACGCGAGAATTGAATTTGA+TGG + chr5_4:60919990-60920009 None:intergenic 40.0%
CATTGTCACTACTCTGTGAA+TGG - chr5_4:60920294-60920313 Msa0861570:intron 40.0%
GATCAATGGTAAACCCGAAA+GGG - chr5_4:60920384-60920403 Msa0861570:intron 40.0%
TTGATTGACTAGACCCTTTC+GGG + chr5_4:60920400-60920419 None:intergenic 40.0%
TCAAAATCAGACGGTCGTAT+AGG + chr5_4:60920437-60920456 None:intergenic 40.0%
!!! GACGTTTTAGAGCGTATTCA+TGG - chr5_4:60920455-60920474 Msa0861570:intron 40.0%
ATACTCAAACTTGAAGCCAG+TGG + chr5_4:60920521-60920540 None:intergenic 40.0%
AGTTCATCACTTTGGCCATT+CGG + chr5_4:60920659-60920678 None:intergenic 40.0%
GGCCAAAGTGATGAACTTAT+TGG - chr5_4:60920662-60920681 Msa0861570:intron 40.0%
! ACAGAACACGTTCTGTTTTC+AGG + chr5_4:60920796-60920815 None:intergenic 40.0%
GTTCTGTTCTTACTACTCTG+TGG - chr5_4:60920809-60920828 Msa0861570:CDS 40.0%
TCAAGGCAAGAGAAACTTGA+TGG - chr5_4:60920963-60920982 Msa0861570:CDS 40.0%
GTTTACACTGTCTGCTTAAG+TGG - chr5_4:60921074-60921093 Msa0861570:intron 40.0%
GATGGGAACCAAGAACTAAA+TGG - chr5_4:60921117-60921136 Msa0861570:CDS 40.0%
TCCAAATGGGAGGTTTAGTT+GGG + chr5_4:60921170-60921189 None:intergenic 40.0%
! TTCTTGGAGGAGAAAGCATA+TGG - chr5_4:60921205-60921224 Msa0861570:intron 40.0%
GGTAGTGCTGTGTAAAAAAC+TGG - chr5_4:60921539-60921558 Msa0861570:intron 40.0%
CACTAAAGTCTGGTCAGATT+TGG + chr5_4:60922066-60922085 None:intergenic 40.0%
ACAAACTGCTACCTATTCCA+AGG + chr5_4:60922127-60922146 None:intergenic 40.0%
AAGCCCTCCAGTAATATGAT+TGG - chr5_4:60922167-60922186 Msa0861570:intron 40.0%
CACCAGCTTCTTCTTTGATA+CGG - chr5_4:60922210-60922229 Msa0861570:intron 40.0%
ACCAGCTTCTTCTTTGATAC+GGG - chr5_4:60922211-60922230 Msa0861570:intron 40.0%
AAGTGTGTTAGAAAGCTGCA+GGG - chr5_4:60922338-60922357 Msa0861570:intron 40.0%
ATTCGTGCACTACGTAAATG+GGG - chr5_4:60922400-60922419 Msa0861570:intron 40.0%
! GTATACGCATAGCCTTTTTG+TGG - chr5_4:60922823-60922842 Msa0861570:exon 40.0%
TTTGTAAGCTACGTGAAGAG+TGG - chr5_4:60922925-60922944 Msa0861570:five_prime_UTR 40.0%
ACGAAGTTAGGAAGATCTCA+AGG - chr5_4:60922980-60922999 Msa0861570:intron 40.0%
AAGTTAGGAAGATCTCAAGG+TGG - chr5_4:60922983-60923002 Msa0861570:intron 40.0%
AGTTAGGAAGATCTCAAGGT+GGG - chr5_4:60922984-60923003 Msa0861570:intron 40.0%
TTGAGAGTGAGACAAGAGAA+TGG + chr5_4:60923026-60923045 None:intergenic 40.0%
! GACTGCCATGTTTCTTTTGT+TGG + chr5_4:60923055-60923074 None:intergenic 40.0%
!!! TACAGTTTTGGTGTCATCTC+TGG + chr5_4:60923225-60923244 None:intergenic 40.0%
AGAGATGACACCAAAACTGT+AGG - chr5_4:60923224-60923243 Msa0861570:intron 40.0%
ACAGCAAGTAGCGAAATGGA+AGG + chr5_4:60919859-60919878 None:intergenic 45.0%
GATCACAGCAAGTAGCGAAA+TGG + chr5_4:60919863-60919882 None:intergenic 45.0%
CACTACTCTGTGAATGGAAG+TGG - chr5_4:60920300-60920319 Msa0861570:intron 45.0%
TGGAAGTGGTTGTTGATGCT+TGG - chr5_4:60920314-60920333 Msa0861570:intron 45.0%
CGATCAATGGTAAACCCGAA+AGG - chr5_4:60920383-60920402 Msa0861570:intron 45.0%
ACACGATGATCTCACCTGAT+GGG + chr5_4:60920491-60920510 None:intergenic 45.0%
AACACGATGATCTCACCTGA+TGG + chr5_4:60920492-60920511 None:intergenic 45.0%
! TCATCGTGTTGTTGTTCCAC+TGG - chr5_4:60920502-60920521 Msa0861570:intron 45.0%
TCGAAGATGTGGTGAACAGA+CGG - chr5_4:60920597-60920616 Msa0861570:intron 45.0%
GTTGATCTTAGTCGACCGAA+TGG - chr5_4:60920641-60920660 Msa0861570:intron 45.0%
ACCCAACTAAACCTCCCATT+TGG - chr5_4:60921166-60921185 Msa0861570:intron 45.0%
CTCCAAATGGGAGGTTTAGT+TGG + chr5_4:60921171-60921190 None:intergenic 45.0%
GTAGTGGTGTCTGAAAGTAG+TGG - chr5_4:60921324-60921343 Msa0861570:intron 45.0%
ATATGCTGTAGAACCAACCG+AGG - chr5_4:60921411-60921430 Msa0861570:intron 45.0%
! AACCTTGGTTCGCTATGTTG+CGG + chr5_4:60921464-60921483 None:intergenic 45.0%
GCGAACCAAGGTTCAAATTC+TGG - chr5_4:60921471-60921490 Msa0861570:intron 45.0%
ACCAAGGTTCAAATTCTGGC+TGG - chr5_4:60921475-60921494 Msa0861570:intron 45.0%
! CCAAGGTTCAAATTCTGGCT+GGG - chr5_4:60921476-60921495 Msa0861570:intron 45.0%
!! TGCCCACTTTTGTGTGAAAC+CGG - chr5_4:60921504-60921523 Msa0861570:intron 45.0%
TCCCGGTTTCACACAAAAGT+GGG + chr5_4:60921509-60921528 None:intergenic 45.0%
TTCCCGGTTTCACACAAAAG+TGG + chr5_4:60921510-60921529 None:intergenic 45.0%
GGTAGGAGTCATATAACTCC+TGG - chr5_4:60921607-60921626 Msa0861570:intron 45.0%
ATTACCTAATGGTCAGCGCT+TGG + chr5_4:60921888-60921907 None:intergenic 45.0%
TGTTCTAACACTGGGAGTAG+TGG - chr5_4:60922088-60922107 Msa0861570:intron 45.0%
! TGGGAGTAGTGGAAGCATAT+AGG - chr5_4:60922099-60922118 Msa0861570:intron 45.0%
! GGGAGTAGTGGAAGCATATA+GGG - chr5_4:60922100-60922119 Msa0861570:intron 45.0%
! GGAGTAGTGGAAGCATATAG+GGG - chr5_4:60922101-60922120 Msa0861570:intron 45.0%
! CAAAGAAGAAGCTGGTGATG+AGG + chr5_4:60922207-60922226 None:intergenic 45.0%
TCCCGTATCAAAGAAGAAGC+TGG + chr5_4:60922215-60922234 None:intergenic 45.0%
AGCTTCTTCTTTGATACGGG+AGG - chr5_4:60922214-60922233 Msa0861570:intron 45.0%
CAAGTGTGTTAGAAAGCTGC+AGG - chr5_4:60922337-60922356 Msa0861570:intron 45.0%
TTCGTGCACTACGTAAATGG+GGG - chr5_4:60922401-60922420 Msa0861570:intron 45.0%
ACTAATGACGCCGTCTAACT+AGG - chr5_4:60922753-60922772 Msa0861570:CDS 45.0%
! CTACGTGAAGAGTGGCTTTA+AGG - chr5_4:60922933-60922952 Msa0861570:five_prime_UTR 45.0%
AACTTCGTTCTTGCACAGCT+TGG + chr5_4:60922968-60922987 None:intergenic 45.0%
AGCTGTGCAAGAACGAAGTT+AGG - chr5_4:60922968-60922987 Msa0861570:intron 45.0%
! ATGTGTGTGGCCTACAGTTT+TGG + chr5_4:60923237-60923256 None:intergenic 45.0%
CGAAGATGTGGTGAACAGAC+GGG - chr5_4:60920598-60920617 Msa0861570:intron 50.0%
ACAGACGGGATATTGTGTCG+TGG - chr5_4:60920612-60920631 Msa0861570:intron 50.0%
CAGACGGGATATTGTGTCGT+GGG - chr5_4:60920613-60920632 Msa0861570:intron 50.0%
AGACGGGATATTGTGTCGTG+GGG - chr5_4:60920614-60920633 Msa0861570:intron 50.0%
CTGTAGAACCAACCGAGGTT+GGG - chr5_4:60921416-60921435 Msa0861570:intron 50.0%
! ACCTTGGTTCGCTATGTTGC+GGG + chr5_4:60921463-60921482 None:intergenic 50.0%
CCCAGCCAGAATTTGAACCT+TGG + chr5_4:60921479-60921498 None:intergenic 50.0%
! GTTCAAATTCTGGCTGGGAG+TGG - chr5_4:60921481-60921500 Msa0861570:intron 50.0%
!! GCCCACTTTTGTGTGAAACC+GGG - chr5_4:60921505-60921524 Msa0861570:intron 50.0%
GCATATAGGGGCCTTGGAAT+AGG - chr5_4:60922113-60922132 Msa0861570:intron 50.0%
TCACGTGCAAGTAAACCGCT+CGG + chr5_4:60922271-60922290 None:intergenic 50.0%
TGCACTACGTAAATGGGGGA+CGG - chr5_4:60922405-60922424 Msa0861570:intron 50.0%
TGCACTTACAATGGCGAGCA+AGG + chr5_4:60922434-60922453 None:intergenic 50.0%
!! GAAGAGTGGCTTTAAGGCAG+TGG - chr5_4:60922939-60922958 Msa0861570:intron 50.0%
AACATGGCAGTCGAGTCTAC+TGG - chr5_4:60923063-60923082 Msa0861570:intron 50.0%
TAAGAATGGGAGCCAACCCA+TGG + chr5_4:60923297-60923316 None:intergenic 50.0%
GCTGTAGAACCAACCGAGGT+TGG - chr5_4:60921415-60921434 Msa0861570:intron 55.0%
TCCCGCAACATAGCGAACCA+AGG - chr5_4:60921459-60921478 Msa0861570:intron 55.0%
GCGCTTGGCACCAAAAGACT+AGG + chr5_4:60921873-60921892 None:intergenic 55.0%
! GTGGAAGCATATAGGGGCCT+TGG - chr5_4:60922107-60922126 Msa0861570:intron 55.0%
AAGCATTCCAACGTGCCGAG+CGG - chr5_4:60922253-60922272 Msa0861570:intron 55.0%
AAGTAAACCGCTCGGCACGT+TGG + chr5_4:60922263-60922282 None:intergenic 55.0%
CCAACCGAGGTTGGGTCTAG+CGG - chr5_4:60921424-60921443 Msa0861570:intron 60.0%
CGTTCCGCTAGACCCAACCT+CGG + chr5_4:60921431-60921450 None:intergenic 60.0%
CGAGGTTGGGTCTAGCGGAA+CGG - chr5_4:60921429-60921448 Msa0861570:intron 60.0%
GAGGTTGGGTCTAGCGGAAC+GGG - chr5_4:60921430-60921449 Msa0861570:intron 60.0%
!! GGTGCCAAGCGCTGACCATT+AGG - chr5_4:60921881-60921900 Msa0861570:intron 60.0%
CCGCTAGACCCAACCTCGGT+TGG + chr5_4:60921427-60921446 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60919801 60923412 60919801 ID=Msa0861570;Name=Msa0861570
chr5_4 mRNA 60919801 60923412 60919801 ID=Msa0861570-mRNA-1;Parent=Msa0861570;Name=Msa0861570-mRNA-1;_AED=0.23;_eAED=0.23;_QI=240|1|1|1|0.4|0.33|6|311|257
chr5_4 exon 60919801 60920304 60919801 ID=Msa0861570-mRNA-1:exon:18885;Parent=Msa0861570-mRNA-1
chr5_4 exon 60920769 60920997 60920769 ID=Msa0861570-mRNA-1:exon:18884;Parent=Msa0861570-mRNA-1
chr5_4 exon 60921079 60921178 60921079 ID=Msa0861570-mRNA-1:exon:18883;Parent=Msa0861570-mRNA-1
chr5_4 exon 60922489 60922633 60922489 ID=Msa0861570-mRNA-1:exon:18882;Parent=Msa0861570-mRNA-1
chr5_4 exon 60922718 60922953 60922718 ID=Msa0861570-mRNA-1:exon:18881;Parent=Msa0861570-mRNA-1
chr5_4 exon 60923302 60923412 60923302 ID=Msa0861570-mRNA-1:exon:18880;Parent=Msa0861570-mRNA-1
chr5_4 five_prime_UTR 60923302 60923412 60923302 ID=Msa0861570-mRNA-1:five_prime_utr;Parent=Msa0861570-mRNA-1
chr5_4 five_prime_UTR 60922825 60922953 60922825 ID=Msa0861570-mRNA-1:five_prime_utr;Parent=Msa0861570-mRNA-1
chr5_4 CDS 60922718 60922824 60922718 ID=Msa0861570-mRNA-1:cds;Parent=Msa0861570-mRNA-1
chr5_4 CDS 60922489 60922633 60922489 ID=Msa0861570-mRNA-1:cds;Parent=Msa0861570-mRNA-1
chr5_4 CDS 60921079 60921178 60921079 ID=Msa0861570-mRNA-1:cds;Parent=Msa0861570-mRNA-1
chr5_4 CDS 60920769 60920997 60920769 ID=Msa0861570-mRNA-1:cds;Parent=Msa0861570-mRNA-1
chr5_4 CDS 60920112 60920304 60920112 ID=Msa0861570-mRNA-1:cds;Parent=Msa0861570-mRNA-1
chr5_4 three_prime_UTR 60919801 60920111 60919801 ID=Msa0861570-mRNA-1:three_prime_utr;Parent=Msa0861570-mRNA-1
Gene Sequence

>Msa0861570

ATGGTAAACCCGAAAGGGTCTAGTCAATCAAAAATATGCTATCGGCCTATACGACCGTCTGATTTTGACGTTTTAGAGCGTATTCATGGTAGATTATTTCCCATCAGGTATGAATCTGCTTTTTTCGAAGATGTGGTGAACAGACGGGATATTGTGTCGTGGGGAGCAGTTGATCTTAGTCGACCGAATGGCCAAAGTGATGAACTTATTGGATTTGTAACAGCGCGGATTGTTCTTGCAAAAGAAAGTGAGATAGTGGATTTGCTTGGATATGACTCAGCCAAATCTGACCAGACTTTAGTGTATGTTCTAACACTGGGAGTAGTGGAAGCATATAGGGGCCTTGGAATAGCTTCTTCTTTGATACGGGAGGTCGTAAAGTATGCTTCAAGCATTCCAACGTGCCGAGCGGTTTACTTGCACGTGATTTCTTTCAATATCTCAGCAATCAATTTATACAAGAAAATGTCTTTCAAGTGTGTTAGAAAGCTGCAGGGCTTTTATTTTATCAATGGCCAACACTATGATTCATTTTTATTCGTGCACTACGTAAATGGGGGACGGTCTCCTTGCTCGCCATTACAGCTTCTCTCTGCATTTGTAAGCTACGTGAAGAGTGGCTTTAAGGCAGTGGCTGCCAAGCTGTGCAAGAACGAAGTTAGGAAGATCTCAAGGTGGGAAAAGTGTAGAGAAAGCCATTCTCTTGTCTCACTCTCAACAATACCCAACAAAAGAAACATGGCAGTCGAGTCTACTGGTTGTGAGTTTGTGTAA

Protein sequence

>Msa0861570

MVNPKGSSQSKICYRPIRPSDFDVLERIHGRLFPIRYESAFFEDVVNRRDIVSWGAVDLSRPNGQSDELIGFVTARIVLAKESEIVDLLGYDSAKSDQTLVYVLTLGVVEAYRGLGIASSLIREVVKYASSIPTCRAVYLHVISFNISAINLYKKMSFKCVRKLQGFYFINGQHYDSFLFVHYVNGGRSPCSPLQLLSAFVSYVKSGFKAVAAKLCKNEVRKISRWEKCRESHSLVSLSTIPNKRNMAVESTGCEFV*