AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750850 MtrunA17_Chr5g0395301 98.039 102 2 0 1 102 156 257 2.30e-71 213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750850 AT5G16800.2 48.571 105 48 3 1 102 169 270 4.97e-28 102
Msa0750850 AT3G02980.2 48.052 77 39 1 1 77 99 174 1.28e-22 86.7
Msa0750850 AT3G02980.1 48.052 77 39 1 1 77 169 244 4.15e-22 87.0
Msa0750850 AT5G16800.3 42.991 107 54 3 1 102 169 273 8.39e-20 81.3
Msa0750850 AT5G16800.1 47.887 71 31 1 1 71 169 233 1.96e-17 74.3

Find 83 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTATCAAGTGTTAAA+TGG 0.185040 5_2:+4424473 Msa0750850:five_prime_UTR
TTGATTGACTAGACCCTTTC+GGG 0.206622 5_2:-4424606 None:intergenic
CTGTTGATTATTGTCGTAAT+TGG 0.221186 5_2:+4427853 Msa0750850:three_prime_UTR
TTATTCGTGCACTACGTAAA+TGG 0.221441 5_2:+4426880 Msa0750850:CDS
CTACGTGAAGAGTGGCTTTA+AGG 0.221630 5_2:+4427414 Msa0750850:CDS
ACATACAGTAAGTATAATTT+TGG 0.231091 5_2:-4427651 None:intergenic
GGCCAAAGTGATGAACTTAT+TGG 0.280025 5_2:+4424870 Msa0750850:five_prime_UTR
AACAATCATCATAATCTTCT+TGG 0.297967 5_2:+4424100 Msa0750850:five_prime_UTR
GGGAGTAGTGGAAGCATATA+GGG 0.323949 5_2:+4426582 Msa0750850:five_prime_UTR
CAGAGTAGTGACAATGAAAA+AGG 0.325536 5_2:-4424496 None:intergenic
CACTAAAGTCTGGTCAGATT+TGG 0.334799 5_2:-4426545 None:intergenic
TATTCGTGCACTACGTAAAT+GGG 0.359781 5_2:+4426881 Msa0750850:CDS
TTTGATTGACTAGACCCTTT+CGG 0.370243 5_2:-4424607 None:intergenic
TGGGAGTAGTGGAAGCATAT+AGG 0.379806 5_2:+4426581 Msa0750850:five_prime_UTR
GCATATAGGGGCCTTGGAAT+AGG 0.403458 5_2:+4426595 Msa0750850:five_prime_UTR
AGTATTATCTTCTATAAGAA+TGG 0.411563 5_2:-4427789 None:intergenic
CACCAGCTTCTTCTTTGATA+CGG 0.412039 5_2:+4426692 Msa0750850:intron
ATGTGTGTGGCCTACAGTTT+TGG 0.417271 5_2:-4427715 None:intergenic
TCAAAATCAGACGGTCGTAT+AGG 0.418162 5_2:-4424642 None:intergenic
ATGGTAGATTATTTCCCATC+AGG 0.419207 5_2:+4424682 Msa0750850:five_prime_UTR
GTGGAAGCATATAGGGGCCT+TGG 0.421160 5_2:+4426589 Msa0750850:five_prime_UTR
AGTTCATCACTTTGGCCATT+CGG 0.428159 5_2:-4424864 None:intergenic
CATTGTCACTACTCTGTGAA+TGG 0.432482 5_2:+4424503 Msa0750850:five_prime_UTR
TGGAAGTGGTTGTTGATGCT+TGG 0.446825 5_2:+4424523 Msa0750850:five_prime_UTR
ACCAGCTTCTTCTTTGATAC+GGG 0.449831 5_2:+4426693 Msa0750850:intron
CTATTCTGTCAGAATAAACT+TGG 0.453739 5_2:+4427676 Msa0750850:three_prime_UTR
CAAGTGTGTTAGAAAGCTGC+AGG 0.455738 5_2:+4426819 Msa0750850:CDS
ATTATGATGATTGTTTCGTT+CGG 0.467301 5_2:-4424092 None:intergenic
ATCCAATAAGTTCATCACTT+TGG 0.471996 5_2:-4424872 None:intergenic
AAATGAAAGAACATAGAGAA+GGG 0.480347 5_2:+4424010 None:intergenic
AGCTGTGCAAGAACGAAGTT+AGG 0.483514 5_2:+4427449 Msa0750850:CDS
TGCACTTACAATGGCGAGCA+AGG 0.487162 5_2:-4426913 None:intergenic
TAAGTGGAAATAACGATCAA+TGG 0.489757 5_2:+4424579 Msa0750850:five_prime_UTR
GATCACAGCAAGTAGCGAAA+TGG 0.489793 5_2:-4424070 None:intergenic
TAAGTGTGATTGAATAGTAC+AGG 0.496458 5_2:-4427608 None:intergenic
AACTTCGTTCTTGCACAGCT+TGG 0.497962 5_2:-4427446 None:intergenic
GTATTATCTTCTATAAGAAT+GGG 0.503576 5_2:-4427788 None:intergenic
CAAATTATTTGACCATGGGT+TGG 0.512806 5_2:+4427763 Msa0750850:three_prime_UTR
TTGTAGATAGTGGATTTGCT+TGG 0.513932 5_2:+4426511 Msa0750850:intron
CGAAGATGTGGTGAACAGAC+GGG 0.516575 5_2:+4424806 Msa0750850:five_prime_UTR
CACTACTCTGTGAATGGAAG+TGG 0.518401 5_2:+4424509 Msa0750850:five_prime_UTR
TTTAGTGTATGTTCTAACAC+TGG 0.518861 5_2:+4426561 Msa0750850:five_prime_UTR
TTAGAACATACACTAAAGTC+TGG 0.520023 5_2:-4426555 None:intergenic
TTAACAAATTATTTGACCAT+GGG 0.522271 5_2:+4427759 Msa0750850:three_prime_UTR
TTGAGAGTGAGACAAGAGAA+TGG 0.529226 5_2:-4427504 None:intergenic
GATCAATGGTAAACCCGAAA+GGG 0.533764 5_2:+4424593 Msa0750850:five_prime_UTR
TTTAACAAATTATTTGACCA+TGG 0.535676 5_2:+4427758 Msa0750850:three_prime_UTR
AGTCAATCAAAATATGCTAT+CGG 0.537987 5_2:+4424619 Msa0750850:five_prime_UTR
TCGAAGATGTGGTGAACAGA+CGG 0.541792 5_2:+4424805 Msa0750850:five_prime_UTR
CAGACGGGATATTGTGTCGT+GGG 0.543303 5_2:+4424821 Msa0750850:five_prime_UTR
GAAATGAAAGAACATAGAGA+AGG 0.550858 5_2:+4424009 None:intergenic
ACTTATAATTCTCACTAGAA+AGG 0.552289 5_2:+4427626 Msa0750850:three_prime_UTR
TGTTCTAACACTGGGAGTAG+TGG 0.563129 5_2:+4426570 Msa0750850:five_prime_UTR
TGTTCTTGCAAAAGAAAGTG+AGG 0.573579 5_2:+4424911 Msa0750850:five_prime_UTR
GAAGAGTGGCTTTAAGGCAG+TGG 0.581385 5_2:+4427420 Msa0750850:CDS
AACATGGCAGTCGAGTCTAC+TGG 0.586352 5_2:+4427544 Msa0750850:CDS
CGATCAATGGTAAACCCGAA+AGG 0.590054 5_2:+4424592 Msa0750850:five_prime_UTR
TTGGCAGAAGTAGTAAGAGT+AGG 0.590269 5_2:+4427872 Msa0750850:three_prime_UTR
AGCTTCTTCTTTGATACGGG+AGG 0.591740 5_2:+4426696 Msa0750850:intron
ACAAACTGCTACCTATTCCA+AGG 0.593056 5_2:-4426606 None:intergenic
TTAGTGTATGTTCTAACACT+GGG 0.599355 5_2:+4426562 Msa0750850:five_prime_UTR
TTTGTAAGCTACGTGAAGAG+TGG 0.599551 5_2:+4427406 Msa0750850:CDS
ACACGATGATCTCACCTGAT+GGG 0.613102 5_2:-4424696 None:intergenic
ATTCGTGCACTACGTAAATG+GGG 0.616046 5_2:+4426882 Msa0750850:CDS
AGAGATGACACCAAAACTGT+AGG 0.623611 5_2:+4427705 Msa0750850:three_prime_UTR
GTTGATCTTAGTCGACCGAA+TGG 0.627310 5_2:+4424849 Msa0750850:five_prime_UTR
ACGAAGTTAGGAAGATCTCA+AGG 0.631340 5_2:+4427461 Msa0750850:CDS
AGTTAGGAAGATCTCAAGGT+GGG 0.635024 5_2:+4427465 Msa0750850:CDS
GGAGTAGTGGAAGCATATAG+GGG 0.641948 5_2:+4426583 Msa0750850:five_prime_UTR
TAAGAATGGGAGCCAACCCA+TGG 0.644300 5_2:-4427775 None:intergenic
AAGTGTGTTAGAAAGCTGCA+GGG 0.647080 5_2:+4426820 Msa0750850:CDS
TTCGTGCACTACGTAAATGG+GGG 0.652317 5_2:+4426883 Msa0750850:CDS
AATGAAAGAACATAGAGAAG+GGG 0.653227 5_2:+4424011 None:intergenic
ACAGACGGGATATTGTGTCG+TGG 0.662598 5_2:+4424820 Msa0750850:five_prime_UTR
TCACGTGCAAGTAAACCGCT+CGG 0.669384 5_2:-4426750 None:intergenic
AAGCATTCCAACGTGCCGAG+CGG 0.675262 5_2:+4426735 Msa0750850:five_prime_UTR
ACAGCAAGTAGCGAAATGGA+AGG 0.676149 5_2:-4424066 None:intergenic
AGACGGGATATTGTGTCGTG+GGG 0.679193 5_2:+4424822 Msa0750850:five_prime_UTR
AATACCCAACAAAAGAAACA+TGG 0.688655 5_2:+4427528 Msa0750850:CDS
TCTAAAACGTCAAAATCAGA+CGG 0.689832 5_2:-4424651 None:intergenic
AAGTAAACCGCTCGGCACGT+TGG 0.692398 5_2:-4426742 None:intergenic
AAGTTAGGAAGATCTCAAGG+TGG 0.739682 5_2:+4427464 Msa0750850:CDS
TTATTGGATTTGTAACAGCG+CGG 0.789219 5_2:+4424886 Msa0750850:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTATTTATTTTAATATTCT+TGG + chr5_2:4425672-4425691 Msa0750850:intron 10.0%
!!! TTCTGAAAATTTTGTTTATT+TGG + chr5_2:4424443-4424462 Msa0750850:intron 15.0%
!!! ATTTACTTGTTTTCTATAAA+GGG + chr5_2:4425067-4425086 Msa0750850:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr5_2:4425249-4425268 None:intergenic 15.0%
!! GAAAAAAATTAAAGTTGTAT+TGG - chr5_2:4425289-4425308 None:intergenic 15.0%
!! TTAAAATAAATACTCCAAAT+GGG - chr5_2:4425666-4425685 None:intergenic 15.0%
!! ATTAAAATAAATACTCCAAA+TGG - chr5_2:4425667-4425686 None:intergenic 15.0%
!!! ATTTATTTTAATATTCTTGG+AGG + chr5_2:4425675-4425694 Msa0750850:intron 15.0%
!! AATAAAAAATTATCAGCAAA+AGG - chr5_2:4426473-4426492 None:intergenic 15.0%
!! ATATTGAAGTCTAATAAATT+CGG - chr5_2:4427270-4427289 None:intergenic 15.0%
!!! GTTCTTTTATCTATAAAAAA+CGG + chr5_2:4427327-4427346 Msa0750850:intron 15.0%
!! TGCATACAGTTATATATAAA+GGG - chr5_2:4424943-4424962 None:intergenic 20.0%
!! ATGCATACAGTTATATATAA+AGG - chr5_2:4424944-4424963 None:intergenic 20.0%
!!! GATTTACTTGTTTTCTATAA+AGG + chr5_2:4425066-4425085 Msa0750850:intron 20.0%
!!! TTTACTTGTTTTCTATAAAG+GGG + chr5_2:4425068-4425087 Msa0750850:intron 20.0%
!!! TGTCTTTTTCTAATAAAGTA+AGG + chr5_2:4425367-4425386 Msa0750850:intron 20.0%
!! AAATGGAATGAAATAATCAT+TGG - chr5_2:4425416-4425435 None:intergenic 20.0%
!! TTGAAATATTACATCAAACA+TGG - chr5_2:4425532-4425551 None:intergenic 20.0%
!! ACTACAATATATATTCCTAA+TGG - chr5_2:4425792-4425811 None:intergenic 20.0%
!! ATTAGGAATATATATTGTAG+TGG + chr5_2:4425791-4425810 Msa0750850:intron 20.0%
!!! CATTTTGATTATAACTTCTA+TGG + chr5_2:4425832-4425851 Msa0750850:intron 20.0%
!!! CTACAGCATATATTTTTAAT+AGG - chr5_2:4425885-4425904 None:intergenic 20.0%
!!! TTTTTCATAACAAGTTGTAT+TGG + chr5_2:4426113-4426132 Msa0750850:intron 20.0%
!!! TTTTCATAACAAGTTGTATT+GGG + chr5_2:4426114-4426133 Msa0750850:intron 20.0%
!!! AAAAAAAAAAGAGTATTGTC+TGG - chr5_2:4426205-4426224 None:intergenic 20.0%
!! TTATTCACCAATTTATCAAT+TGG + chr5_2:4426321-4426340 Msa0750850:intron 20.0%
!! TATAACACCAATTGATAAAT+TGG - chr5_2:4426331-4426350 None:intergenic 20.0%
!! AATATTATTCTTGTAGATAG+TGG + chr5_2:4426501-4426520 Msa0750850:intron 20.0%
!! ATAAAAATGAATCATAGTGT+TGG - chr5_2:4426864-4426883 None:intergenic 20.0%
!!! TAAAGAATACAAAACCTTTT+TGG - chr5_2:4427119-4427138 None:intergenic 20.0%
!! ATGGAAAATAAAATTCTCTA+AGG - chr5_2:4427358-4427377 None:intergenic 20.0%
!!! ACATACAGTAAGTATAATTT+TGG - chr5_2:4427654-4427673 None:intergenic 20.0%
!! TTTAACAAATTATTTGACCA+TGG + chr5_2:4427758-4427777 Msa0750850:three_prime_UTR 20.0%
!! TTAACAAATTATTTGACCAT+GGG + chr5_2:4427759-4427778 Msa0750850:three_prime_UTR 20.0%
!! GTATTATCTTCTATAAGAAT+GGG - chr5_2:4427791-4427810 None:intergenic 20.0%
!! AGTATTATCTTCTATAAGAA+TGG - chr5_2:4427792-4427811 None:intergenic 20.0%
! ATTATGATGATTGTTTCGTT+CGG - chr5_2:4424095-4424114 None:intergenic 25.0%
! AACAATCATCATAATCTTCT+TGG + chr5_2:4424100-4424119 Msa0750850:five_prime_UTR 25.0%
!!! TAATTTTAACAAACACGTGA+TGG - chr5_2:4424146-4424165 None:intergenic 25.0%
! ATCAACTATCATTCATTTCT+AGG + chr5_2:4424266-4424285 Msa0750850:intron 25.0%
! TGCAATTATCAAGTGTTAAA+TGG + chr5_2:4424473-4424492 Msa0750850:five_prime_UTR 25.0%
!! GATATTTTCTGTGAATTAAG+TGG + chr5_2:4424563-4424582 Msa0750850:five_prime_UTR 25.0%
! AGTCAATCAAAATATGCTAT+CGG + chr5_2:4424619-4424638 Msa0750850:five_prime_UTR 25.0%
!!! TGAGTATTTTGATTTGTGTT+TGG + chr5_2:4424742-4424761 Msa0750850:intron 25.0%
! TTAAGATGTTTATGAATCTC+AGG + chr5_2:4424766-4424785 Msa0750850:intron 25.0%
! GCATACAGTTATATATAAAG+GGG - chr5_2:4424942-4424961 None:intergenic 25.0%
!! ACATAACACATACTTTGTTT+GGG - chr5_2:4425145-4425164 None:intergenic 25.0%
!!! AAATGACACTCATTTTGAAA+CGG - chr5_2:4425224-4425243 None:intergenic 25.0%
!! AGATTGATAGACTCAAATTT+TGG - chr5_2:4425493-4425512 None:intergenic 25.0%
! TTTATGAGTAGTTATCCATT+AGG + chr5_2:4425774-4425793 Msa0750850:intron 25.0%
! ATCGAATGAGATAGTTTAAT+CGG - chr5_2:4426420-4426439 None:intergenic 25.0%
! GTTAAACTAAGAATTACAGA+GGG - chr5_2:4426451-4426470 None:intergenic 25.0%
! TAGATTACCAATCATATTAC+TGG - chr5_2:4426659-4426678 None:intergenic 25.0%
! TCAAAACGATTATTTGACAT+TGG + chr5_2:4427208-4427227 Msa0750850:intron 25.0%
! TCAATATTGATGTATACTTG+TGG + chr5_2:4427283-4427302 Msa0750850:intron 25.0%
! TAGATAAAAGAACCACAAAA+AGG - chr5_2:4427320-4427339 None:intergenic 25.0%
! ACTTATAATTCTCACTAGAA+AGG + chr5_2:4427626-4427645 Msa0750850:three_prime_UTR 25.0%
!! TTTTACATTGTATATGTGTG+TGG - chr5_2:4427731-4427750 None:intergenic 25.0%
! ACAACAATTGACTCAAATCT+TGG - chr5_2:4424365-4424384 None:intergenic 30.0%
TAAGTGGAAATAACGATCAA+TGG + chr5_2:4424579-4424598 Msa0750850:five_prime_UTR 30.0%
! TCTAAAACGTCAAAATCAGA+CGG - chr5_2:4424654-4424673 None:intergenic 30.0%
ATCCAATAAGTTCATCACTT+TGG - chr5_2:4424875-4424894 None:intergenic 30.0%
GACATAACACATACTTTGTT+TGG - chr5_2:4425146-4425165 None:intergenic 30.0%
ATGTGTTATGTCTATGTTCA+AGG + chr5_2:4425154-4425173 Msa0750850:intron 30.0%
TTGACACACAGATTAAGAAA+TGG - chr5_2:4425433-4425452 None:intergenic 30.0%
!! TGATCCTTTTATTAGTCTGA+TGG + chr5_2:4425582-4425601 Msa0750850:intron 30.0%
!! GATCCTTTTATTAGTCTGAT+GGG + chr5_2:4425583-4425602 Msa0750850:intron 30.0%
TAAGCTAATGGAACATTATC+AGG - chr5_2:4425627-4425646 None:intergenic 30.0%
!!! TTAGTTGGGTTTTAAGCTAA+TGG - chr5_2:4425639-4425658 None:intergenic 30.0%
AAATAAATACTCCAAATGGG+AGG - chr5_2:4425663-4425682 None:intergenic 30.0%
ACTTCTATGGTGACAATTAT+AGG + chr5_2:4425845-4425864 Msa0750850:intron 30.0%
CTGTGTTTATGTTGTAAGTT+TGG + chr5_2:4426045-4426064 Msa0750850:intron 30.0%
!! ACAACTTGTTATGAAAAACC+AGG - chr5_2:4426111-4426130 None:intergenic 30.0%
ATTGTGTGATTCAATTGCAT+TGG + chr5_2:4426142-4426161 Msa0750850:intron 30.0%
AACTTACAATTCACACAAAC+TGG - chr5_2:4426179-4426198 None:intergenic 30.0%
GTTTGTGTGAATTGTAAGTT+TGG + chr5_2:4426179-4426198 Msa0750850:intron 30.0%
CAAGCAATACAACTAAGAAA+AGG - chr5_2:4426279-4426298 None:intergenic 30.0%
TTGAGTAAGTCATTACCTAA+TGG - chr5_2:4426381-4426400 None:intergenic 30.0%
GGTTAAACTAAGAATTACAG+AGG - chr5_2:4426452-4426471 None:intergenic 30.0%
TTAGAACATACACTAAAGTC+TGG - chr5_2:4426558-4426577 None:intergenic 30.0%
TTTAGTGTATGTTCTAACAC+TGG + chr5_2:4426561-4426580 Msa0750850:five_prime_UTR 30.0%
TTAGTGTATGTTCTAACACT+GGG + chr5_2:4426562-4426581 Msa0750850:five_prime_UTR 30.0%
TTACCAATCATATTACTGGA+GGG - chr5_2:4426655-4426674 None:intergenic 30.0%
ATTACCAATCATATTACTGG+AGG - chr5_2:4426656-4426675 None:intergenic 30.0%
!!! CAGGGCTTTTATTTTATCAA+TGG + chr5_2:4426838-4426857 Msa0750850:CDS 30.0%
GAAAGATATTGCACTTACAA+TGG - chr5_2:4426925-4426944 None:intergenic 30.0%
TTGTAGTATTACTCCTTAAC+TGG + chr5_2:4427046-4427065 Msa0750850:intron 30.0%
TGTAGTATTACTCCTTAACT+GGG + chr5_2:4427047-4427066 Msa0750850:intron 30.0%
CAAATTCTATATCCCAGTTA+AGG - chr5_2:4427062-4427081 None:intergenic 30.0%
TTGGTTCAACTTCATTACTT+TGG - chr5_2:4427100-4427119 None:intergenic 30.0%
GTAATGAAGTTGAACCAAAA+AGG + chr5_2:4427102-4427121 Msa0750850:intron 30.0%
! AAGCTGTCTGAAATATGAAA+TGG - chr5_2:4427377-4427396 None:intergenic 30.0%
AATACCCAACAAAAGAAACA+TGG + chr5_2:4427528-4427547 Msa0750850:CDS 30.0%
ACAGGAAAAAGAAAACTAAC+AGG - chr5_2:4427593-4427612 None:intergenic 30.0%
TAAGTGTGATTGAATAGTAC+AGG - chr5_2:4427611-4427630 None:intergenic 30.0%
CTATTCTGTCAGAATAAACT+TGG + chr5_2:4427676-4427695 Msa0750850:three_prime_UTR 30.0%
! CTGTTGATTATTGTCGTAAT+TGG + chr5_2:4427853-4427872 Msa0750850:three_prime_UTR 30.0%
CAGAGTAGTGACAATGAAAA+AGG - chr5_2:4424499-4424518 None:intergenic 35.0%
TTTGATTGACTAGACCCTTT+CGG - chr5_2:4424610-4424629 None:intergenic 35.0%
ATGGTAGATTATTTCCCATC+AGG + chr5_2:4424682-4424701 Msa0750850:five_prime_UTR 35.0%
!!! ATCTGCTTTTTTCGAAGATG+TGG + chr5_2:4424794-4424813 Msa0750850:five_prime_UTR 35.0%
TTATTGGATTTGTAACAGCG+CGG + chr5_2:4424886-4424905 Msa0750850:five_prime_UTR 35.0%
TGTTCTTGCAAAAGAAAGTG+AGG + chr5_2:4424911-4424930 Msa0750850:five_prime_UTR 35.0%
TTACTACTCTGTGGAAAGTA+TGG + chr5_2:4425026-4425045 Msa0750850:intron 35.0%
AAAGTTTGAGAGGGTAAAGT+TGG - chr5_2:4425314-4425333 None:intergenic 35.0%
!! TTCAAAATGAGTGTCGCTTT+AGG - chr5_2:4425458-4425477 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+GGG + chr5_2:4425463-4425482 Msa0750850:intron 35.0%
TTAAGCAGACAGTGTAAACT+AGG - chr5_2:4425556-4425575 None:intergenic 35.0%
GTTCCCATCAGACTAATAAA+AGG - chr5_2:4425589-4425608 None:intergenic 35.0%
!! TATCAGGTCCATTTAGTTCT+TGG - chr5_2:4425611-4425630 None:intergenic 35.0%
ACTTATGATTCACTTATGCG+TGG + chr5_2:4425721-4425740 Msa0750850:intron 35.0%
TGAAACCGGGAAGAAAAAAA+AGG + chr5_2:4426001-4426020 Msa0750850:intron 35.0%
!!! CACTACCTTTTTTTTCTTCC+CGG - chr5_2:4426009-4426028 None:intergenic 35.0%
GGTAGTGCTGTGTAAAAAAA+TGG + chr5_2:4426022-4426041 Msa0750850:intron 35.0%
CAGAATATCAGAATACTCTC+TGG + chr5_2:4426069-4426088 Msa0750850:intron 35.0%
ATATCAGAATACTCTCTGGT+AGG + chr5_2:4426073-4426092 Msa0750850:intron 35.0%
TAAGTAGACAGAGAATACGT+AGG + chr5_2:4426233-4426252 Msa0750850:intron 35.0%
! CGTAGGAGTAATACGAATTT+TGG + chr5_2:4426250-4426269 Msa0750850:intron 35.0%
!! GGTGTTATATCCTAGTCTTT+TGG + chr5_2:4426342-4426361 Msa0750850:intron 35.0%
ACTATCTCATTCGATAGAGT+AGG + chr5_2:4426425-4426444 Msa0750850:intron 35.0%
!! TTGTAGATAGTGGATTTGCT+TGG + chr5_2:4426511-4426530 Msa0750850:intron 35.0%
TTATTCGTGCACTACGTAAA+TGG + chr5_2:4426880-4426899 Msa0750850:CDS 35.0%
TATTCGTGCACTACGTAAAT+GGG + chr5_2:4426881-4426900 Msa0750850:CDS 35.0%
TCAGTCAGAATATAACAGCA+GGG - chr5_2:4426958-4426977 None:intergenic 35.0%
ATCAGTCAGAATATAACAGC+AGG - chr5_2:4426959-4426978 None:intergenic 35.0%
GAAACTGAAACCTAGTTAGA+CGG - chr5_2:4427248-4427267 None:intergenic 35.0%
! ACTGCCATGTTTCTTTTGTT+GGG - chr5_2:4427535-4427554 None:intergenic 35.0%
CAAATTATTTGACCATGGGT+TGG + chr5_2:4427763-4427782 Msa0750850:three_prime_UTR 35.0%
CACGCGAGAATTGAATTTGA+TGG - chr5_2:4424200-4424219 None:intergenic 40.0%
CATTGTCACTACTCTGTGAA+TGG + chr5_2:4424503-4424522 Msa0750850:five_prime_UTR 40.0%
GATCAATGGTAAACCCGAAA+GGG + chr5_2:4424593-4424612 Msa0750850:five_prime_UTR 40.0%
TTGATTGACTAGACCCTTTC+GGG - chr5_2:4424609-4424628 None:intergenic 40.0%
TCAAAATCAGACGGTCGTAT+AGG - chr5_2:4424645-4424664 None:intergenic 40.0%
!!! GACGTTTTAGAGCGTATTCA+TGG + chr5_2:4424663-4424682 Msa0750850:five_prime_UTR 40.0%
ATACTCAAACTTGAAGCCAG+TGG - chr5_2:4424729-4424748 None:intergenic 40.0%
AGTTCATCACTTTGGCCATT+CGG - chr5_2:4424867-4424886 None:intergenic 40.0%
GGCCAAAGTGATGAACTTAT+TGG + chr5_2:4424870-4424889 Msa0750850:five_prime_UTR 40.0%
! ACAGAACACGTTCTGTTTTC+AGG - chr5_2:4425004-4425023 None:intergenic 40.0%
GTTCTGTTCTTACTACTCTG+TGG + chr5_2:4425017-4425036 Msa0750850:intron 40.0%
TCAAGGCAAGAGAAACTTGA+TGG + chr5_2:4425171-4425190 Msa0750850:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr5_2:4425220-4425239 None:intergenic 40.0%
!!! TGACACTCATTTTGAAACGG+AGG - chr5_2:4425221-4425240 None:intergenic 40.0%
TGCGAGAGAAAAGTTTGAGA+GGG - chr5_2:4425323-4425342 None:intergenic 40.0%
!!! CGACACTCATTTTGAAACAG+AGG + chr5_2:4425462-4425481 Msa0750850:intron 40.0%
GTTTACACTGTCTGCTTAAG+TGG + chr5_2:4425557-4425576 Msa0750850:intron 40.0%
GATGGGAACCAAGAACTAAA+TGG + chr5_2:4425600-4425619 Msa0750850:intron 40.0%
TCCAAATGGGAGGTTTAGTT+GGG - chr5_2:4425653-4425672 None:intergenic 40.0%
! TTCTTGGAGGAGAAAGCATA+TGG + chr5_2:4425688-4425707 Msa0750850:intron 40.0%
CACTAAAGTCTGGTCAGATT+TGG - chr5_2:4426548-4426567 None:intergenic 40.0%
ACAAACTGCTACCTATTCCA+AGG - chr5_2:4426609-4426628 None:intergenic 40.0%
AAGCCCTCCAGTAATATGAT+TGG + chr5_2:4426649-4426668 Msa0750850:intron 40.0%
CACCAGCTTCTTCTTTGATA+CGG + chr5_2:4426692-4426711 Msa0750850:intron 40.0%
ACCAGCTTCTTCTTTGATAC+GGG + chr5_2:4426693-4426712 Msa0750850:intron 40.0%
AAGTGTGTTAGAAAGCTGCA+GGG + chr5_2:4426820-4426839 Msa0750850:CDS 40.0%
ATTCGTGCACTACGTAAATG+GGG + chr5_2:4426882-4426901 Msa0750850:CDS 40.0%
! GTATACGCATAGCCTTTTTG+TGG + chr5_2:4427305-4427324 Msa0750850:intron 40.0%
TTTGTAAGCTACGTGAAGAG+TGG + chr5_2:4427406-4427425 Msa0750850:CDS 40.0%
ACGAAGTTAGGAAGATCTCA+AGG + chr5_2:4427461-4427480 Msa0750850:CDS 40.0%
AAGTTAGGAAGATCTCAAGG+TGG + chr5_2:4427464-4427483 Msa0750850:CDS 40.0%
AGTTAGGAAGATCTCAAGGT+GGG + chr5_2:4427465-4427484 Msa0750850:CDS 40.0%
TTGAGAGTGAGACAAGAGAA+TGG - chr5_2:4427507-4427526 None:intergenic 40.0%
! GACTGCCATGTTTCTTTTGT+TGG - chr5_2:4427536-4427555 None:intergenic 40.0%
!!! TACAGTTTTGGTGTCATCTC+TGG - chr5_2:4427706-4427725 None:intergenic 40.0%
AGAGATGACACCAAAACTGT+AGG + chr5_2:4427705-4427724 Msa0750850:three_prime_UTR 40.0%
ACAGCAAGTAGCGAAATGGA+AGG - chr5_2:4424069-4424088 None:intergenic 45.0%
GATCACAGCAAGTAGCGAAA+TGG - chr5_2:4424073-4424092 None:intergenic 45.0%
CACTACTCTGTGAATGGAAG+TGG + chr5_2:4424509-4424528 Msa0750850:five_prime_UTR 45.0%
TGGAAGTGGTTGTTGATGCT+TGG + chr5_2:4424523-4424542 Msa0750850:five_prime_UTR 45.0%
CGATCAATGGTAAACCCGAA+AGG + chr5_2:4424592-4424611 Msa0750850:five_prime_UTR 45.0%
ACACGATGATCTCACCTGAT+GGG - chr5_2:4424699-4424718 None:intergenic 45.0%
AACACGATGATCTCACCTGA+TGG - chr5_2:4424700-4424719 None:intergenic 45.0%
! TCATCGTGTTGTTGTTCCAC+TGG + chr5_2:4424710-4424729 Msa0750850:intron 45.0%
TCGAAGATGTGGTGAACAGA+CGG + chr5_2:4424805-4424824 Msa0750850:five_prime_UTR 45.0%
GTTGATCTTAGTCGACCGAA+TGG + chr5_2:4424849-4424868 Msa0750850:five_prime_UTR 45.0%
!! TTGAAACGGAGGGAGTATCA+AGG - chr5_2:4425210-4425229 None:intergenic 45.0%
GTGCGAGAGAAAAGTTTGAG+AGG - chr5_2:4425324-4425343 None:intergenic 45.0%
ACCCAACTAAACCTCCCATT+TGG + chr5_2:4425649-4425668 Msa0750850:intron 45.0%
CTCCAAATGGGAGGTTTAGT+TGG - chr5_2:4425654-4425673 None:intergenic 45.0%
GTAGTGGTGTCTGAAAGTAG+TGG + chr5_2:4425807-4425826 Msa0750850:intron 45.0%
ATATGCTGTAGAACCAACCG+AGG + chr5_2:4425894-4425913 Msa0750850:intron 45.0%
! ACCTTGGTTCGCTATGTTGT+GGG - chr5_2:4425946-4425965 None:intergenic 45.0%
! AACCTTGGTTCGCTATGTTG+TGG - chr5_2:4425947-4425966 None:intergenic 45.0%
GCGAACCAAGGTTCAAATTC+TGG + chr5_2:4425954-4425973 Msa0750850:intron 45.0%
ACCAAGGTTCAAATTCTGGC+TGG + chr5_2:4425958-4425977 Msa0750850:intron 45.0%
! CCAAGGTTCAAATTCTGGCT+GGG + chr5_2:4425959-4425978 Msa0750850:intron 45.0%
!! TGCCCACTTTTGTGTGAAAC+CGG + chr5_2:4425987-4426006 Msa0750850:intron 45.0%
TCCCGGTTTCACACAAAAGT+GGG - chr5_2:4425992-4426011 None:intergenic 45.0%
TTCCCGGTTTCACACAAAAG+TGG - chr5_2:4425993-4426012 None:intergenic 45.0%
GGTAGGAGTCATATAACTCC+TGG + chr5_2:4426090-4426109 Msa0750850:intron 45.0%
ATTACCTAATGGTCAGCGCT+TGG - chr5_2:4426370-4426389 None:intergenic 45.0%
TGTTCTAACACTGGGAGTAG+TGG + chr5_2:4426570-4426589 Msa0750850:five_prime_UTR 45.0%
! TGGGAGTAGTGGAAGCATAT+AGG + chr5_2:4426581-4426600 Msa0750850:five_prime_UTR 45.0%
! GGGAGTAGTGGAAGCATATA+GGG + chr5_2:4426582-4426601 Msa0750850:five_prime_UTR 45.0%
! GGAGTAGTGGAAGCATATAG+GGG + chr5_2:4426583-4426602 Msa0750850:five_prime_UTR 45.0%
! CAAAGAAGAAGCTGGTGATG+AGG - chr5_2:4426689-4426708 None:intergenic 45.0%
TCCCGTATCAAAGAAGAAGC+TGG - chr5_2:4426697-4426716 None:intergenic 45.0%
AGCTTCTTCTTTGATACGGG+AGG + chr5_2:4426696-4426715 Msa0750850:intron 45.0%
CAAGTGTGTTAGAAAGCTGC+AGG + chr5_2:4426819-4426838 Msa0750850:CDS 45.0%
TTCGTGCACTACGTAAATGG+GGG + chr5_2:4426883-4426902 Msa0750850:CDS 45.0%
ACTAATGACGCCGTCTAACT+AGG + chr5_2:4427235-4427254 Msa0750850:intron 45.0%
! CTACGTGAAGAGTGGCTTTA+AGG + chr5_2:4427414-4427433 Msa0750850:CDS 45.0%
AACTTCGTTCTTGCACAGCT+TGG - chr5_2:4427449-4427468 None:intergenic 45.0%
AGCTGTGCAAGAACGAAGTT+AGG + chr5_2:4427449-4427468 Msa0750850:CDS 45.0%
! ATGTGTGTGGCCTACAGTTT+TGG - chr5_2:4427718-4427737 None:intergenic 45.0%
CGAAGATGTGGTGAACAGAC+GGG + chr5_2:4424806-4424825 Msa0750850:five_prime_UTR 50.0%
ACAGACGGGATATTGTGTCG+TGG + chr5_2:4424820-4424839 Msa0750850:five_prime_UTR 50.0%
CAGACGGGATATTGTGTCGT+GGG + chr5_2:4424821-4424840 Msa0750850:five_prime_UTR 50.0%
AGACGGGATATTGTGTCGTG+GGG + chr5_2:4424822-4424841 Msa0750850:five_prime_UTR 50.0%
CTGTAGAACCAACCGAGGTT+GGG + chr5_2:4425899-4425918 Msa0750850:intron 50.0%
TCCCACAACATAGCGAACCA+AGG + chr5_2:4425942-4425961 Msa0750850:intron 50.0%
CCCAGCCAGAATTTGAACCT+TGG - chr5_2:4425962-4425981 None:intergenic 50.0%
! GTTCAAATTCTGGCTGGGAG+TGG + chr5_2:4425964-4425983 Msa0750850:intron 50.0%
!! GCCCACTTTTGTGTGAAACC+GGG + chr5_2:4425988-4426007 Msa0750850:intron 50.0%
GCATATAGGGGCCTTGGAAT+AGG + chr5_2:4426595-4426614 Msa0750850:five_prime_UTR 50.0%
TCACGTGCAAGTAAACCGCT+CGG - chr5_2:4426753-4426772 None:intergenic 50.0%
TGCACTTACAATGGCGAGCA+AGG - chr5_2:4426916-4426935 None:intergenic 50.0%
!! GAAGAGTGGCTTTAAGGCAG+TGG + chr5_2:4427420-4427439 Msa0750850:CDS 50.0%
AACATGGCAGTCGAGTCTAC+TGG + chr5_2:4427544-4427563 Msa0750850:CDS 50.0%
TAAGAATGGGAGCCAACCCA+TGG - chr5_2:4427778-4427797 None:intergenic 50.0%
GCTGTAGAACCAACCGAGGT+TGG + chr5_2:4425898-4425917 Msa0750850:intron 55.0%
GCGCTTGGCACCAAAAGACT+AGG - chr5_2:4426355-4426374 None:intergenic 55.0%
! GTGGAAGCATATAGGGGCCT+TGG + chr5_2:4426589-4426608 Msa0750850:five_prime_UTR 55.0%
AAGCATTCCAACGTGCCGAG+CGG + chr5_2:4426735-4426754 Msa0750850:five_prime_UTR 55.0%
AAGTAAACCGCTCGGCACGT+TGG - chr5_2:4426745-4426764 None:intergenic 55.0%
CCAACCGAGGTTGGGTCTAG+CGG + chr5_2:4425907-4425926 Msa0750850:intron 60.0%
CGTTCCGCTAGACCCAACCT+CGG - chr5_2:4425914-4425933 None:intergenic 60.0%
CGAGGTTGGGTCTAGCGGAA+CGG + chr5_2:4425912-4425931 Msa0750850:intron 60.0%
GAGGTTGGGTCTAGCGGAAC+GGG + chr5_2:4425913-4425932 Msa0750850:intron 60.0%
!! GGTGCCAAGCGCTGACCATT+AGG + chr5_2:4426363-4426382 Msa0750850:intron 60.0%
CCGCTAGACCCAACCTCGGT+TGG - chr5_2:4425910-4425929 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 4424012 4427893 4424012 ID=Msa0750850;Name=Msa0750850
chr5_2 mRNA 4424012 4427893 4424012 ID=Msa0750850-mRNA-1;Parent=Msa0750850;Name=Msa0750850-mRNA-1;_AED=0.13;_eAED=0.13;_QI=703|1|1|1|0.6|0.5|6|311|102
chr5_2 exon 4424012 4424121 4424012 ID=Msa0750850-mRNA-1:exon:1692;Parent=Msa0750850-mRNA-1
chr5_2 exon 4424469 4424703 4424469 ID=Msa0750850-mRNA-1:exon:1693;Parent=Msa0750850-mRNA-1
chr5_2 exon 4424788 4424932 4424788 ID=Msa0750850-mRNA-1:exon:1694;Parent=Msa0750850-mRNA-1
chr5_2 exon 4426517 4426616 4426517 ID=Msa0750850-mRNA-1:exon:1695;Parent=Msa0750850-mRNA-1
chr5_2 exon 4426698 4426926 4426698 ID=Msa0750850-mRNA-1:exon:1696;Parent=Msa0750850-mRNA-1
chr5_2 exon 4427390 4427893 4427390 ID=Msa0750850-mRNA-1:exon:1697;Parent=Msa0750850-mRNA-1
chr5_2 five_prime_UTR 4424012 4424121 4424012 ID=Msa0750850-mRNA-1:five_prime_utr;Parent=Msa0750850-mRNA-1
chr5_2 five_prime_UTR 4424469 4424703 4424469 ID=Msa0750850-mRNA-1:five_prime_utr;Parent=Msa0750850-mRNA-1
chr5_2 five_prime_UTR 4424788 4424932 4424788 ID=Msa0750850-mRNA-1:five_prime_utr;Parent=Msa0750850-mRNA-1
chr5_2 five_prime_UTR 4426517 4426616 4426517 ID=Msa0750850-mRNA-1:five_prime_utr;Parent=Msa0750850-mRNA-1
chr5_2 five_prime_UTR 4426698 4426810 4426698 ID=Msa0750850-mRNA-1:five_prime_utr;Parent=Msa0750850-mRNA-1
chr5_2 CDS 4426811 4426926 4426811 ID=Msa0750850-mRNA-1:cds;Parent=Msa0750850-mRNA-1
chr5_2 CDS 4427390 4427582 4427390 ID=Msa0750850-mRNA-1:cds;Parent=Msa0750850-mRNA-1
chr5_2 three_prime_UTR 4427583 4427893 4427583 ID=Msa0750850-mRNA-1:three_prime_utr;Parent=Msa0750850-mRNA-1
Gene Sequence

>Msa0750850

ATGTCTTTCAAGTGTGTTAGAAAGCTGCAGGGCTTTTATTTTATCAATGGCCAACACTATGATTCATTTTTATTCGTGCACTACGTAAATGGGGGACAGTCTCCTTGCTCGCCATTACAGCTTCTCTCTGCATTTGTAAGCTACGTGAAGAGTGGCTTTAAGGCAGTGGCTGCCAAGCTGTGCAAGAACGAAGTTAGGAAGATCTCAAGGTGGGAAAAGTGTAGAGAAAGCCATTCTCTTGTCTCACTCTCAACAATACCCAACAAAAGAAACATGGCAGTCGAGTCTACTGGTTGTGAGTTTGTGTAA

Protein sequence

>Msa0750850

MSFKCVRKLQGFYFINGQHYDSFLFVHYVNGGQSPCSPLQLLSAFVSYVKSGFKAVAAKLCKNEVRKISRWEKCRESHSLVSLSTIPNKRNMAVESTGCEFV*