AlfalfaGEDB | Msa1386050

M. sativa cultivar zhongmu-4 / Msa1386050

KEGG: K12829
GO: GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0005686 GO:0005689 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:1901360 GO:1902494 GO:1990904
PFAM: PF04037.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1386050	XP_003593554.1	87.034	563	24	8	1	517	1	560	0.0	877

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1386050	sp\|Q13435\|SF3B2_HUMAN	50.092	541	221	15	26	529	367	895	3.31e-129	401

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1386050	G7IPR0	87.034	563	24	8	1	517	1	560	0.0	877

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006040	Msa1386050	0.816487	5.391923e-52	-8.615850e-47
Msa0007440	Msa1386050	0.813847	2.080201e-51	-8.615850e-47
Msa0010490	Msa1386050	0.828696	7.788806e-55	-8.615850e-47
Msa0010500	Msa1386050	0.831901	1.283337e-55	-8.615850e-47
Msa0037540	Msa1386050	-0.812115	4.985600e-51	-8.615850e-47
Msa0037590	Msa1386050	-0.812292	4.562955e-51	-8.615850e-47
Msa0037840	Msa1386050	0.800673	1.290605e-48	-8.615850e-47
Msa0046450	Msa1386050	0.834221	3.396643e-56	-8.615850e-47
Msa0052860	Msa1386050	0.802908	4.487856e-49	-8.615850e-47
Msa0054750	Msa1386050	0.842793	2.080943e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1386050	MtrunA17_Chr2g0282041	87.034	563	24	8	1	517	1	560	0.0	877
Msa1386050	MtrunA17_Chr4g0047751	86.391	507	59	6	28	529	78	579	0.0	801
Msa1386050	MtrunA17_Chr2g0313531	56.364	165	29	4	1	122	1	165	1.65e-41	146

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1386050	AT4G21660.1	77.344	512	100	9	15	516	67	572	0.0	729
Msa1386050	AT4G21660.2	75.717	523	103	9	15	516	67	586	0.0	725
Msa1386050	AT4G21660.3	81.667	360	60	4	160	516	310	666	0.0	561
Msa1386050	AT4G21660.3	71.831	142	33	4	15	149	67	208	1.24e-49	181
Msa1386050	AT1G11520.1	66.957	115	34	3	379	492	85	196	3.71e-40	144

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Find 149 sgRNAs with CRISPR-Local

Find 549 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAATTCATACTTGGC+AGG	0.504336	tig0020780:-91402	None:intergenic
AAAATTTACATACGTGTGTC+CGG	0.405526	tig0020780:-91052	None:intergenic
AAAGCTAGCTCCAGCGGGTA+TGG	0.384929	tig0020780:-89181	None:intergenic
AAATTTACATACGTGTGTCC+GGG	0.587575	tig0020780:-91051	None:intergenic
AACACCTACCAGTCCAGGAT+TGG	0.539428	tig0020780:-85890	None:intergenic
AAGCCAAAGCTGACATCCCT+TGG	0.451340	tig0020780:+87962	Msa1386050:CDS
AAGCTAGCTCCAGCGGGTAT+GGG	0.504829	tig0020780:-89180	None:intergenic
AAGTATACTTCGTCGACAGG+AGG	0.657544	tig0020780:-89231	None:intergenic
AAGTCGTGTGATAACATACC+AGG	0.517875	tig0020780:-88966	None:intergenic
AAGTTGAGGGAGATGAAACC+TGG	0.609533	tig0020780:+88948	Msa1386050:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCGTTGTTTATAGATTGG+AGG	+	tig0020780:84676-84695	Msa1386050:intron	30.0%
GATAACGAGCAAAAAGAAAA+AGG	+	tig0020780:85302-85321	Msa1386050:CDS	30.0%
CGTATCAAACAAGAAGAAAA+AGG	+	tig0020780:85325-85344	Msa1386050:CDS	30.0%
TGAAAACGATGAAGTCAATA+AGG	+	tig0020780:85812-85831	Msa1386050:intron	30.0%
AATAAAGGAGAAACAACTCA+AGG	-	tig0020780:85929-85948	None:intergenic	30.0%
TCAATACGGATCTTATGAAT+TGG	-	tig0020780:86069-86088	None:intergenic	30.0%
TTACAAACGAACTAGACTAA+TGG	+	tig0020780:86104-86123	Msa1386050:intron	30.0%
AAAATTGTATAGCAACGGTT+CGG	-	tig0020780:86144-86163	None:intergenic	30.0%
CAAAAAAACAGTTCAACTTG+GGG	-	tig0020780:86167-86186	None:intergenic	30.0%
GCAAAAAAACAGTTCAACTT+GGG	-	tig0020780:86168-86187	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020780	gene	84445	91857	84445	ID=Msa1386050;Name=Msa1386050
tig0020780	mRNA	84445	91857	84445	ID=Msa1386050-mRNA-1;Parent=Msa1386050;Name=Msa1386050-mRNA-1;_AED=0.16;_eAED=0.16;_QI=115\|0.94\|0.94\|1\|1\|1\|19\|119\|529
tig0020780	exon	84445	84622	84445	ID=Msa1386050-mRNA-1:exon:9918;Parent=Msa1386050-mRNA-1
tig0020780	exon	85011	85118	85011	ID=Msa1386050-mRNA-1:exon:9919;Parent=Msa1386050-mRNA-1
tig0020780	exon	85221	85346	85221	ID=Msa1386050-mRNA-1:exon:9920;Parent=Msa1386050-mRNA-1
tig0020780	exon	85451	85513	85451	ID=Msa1386050-mRNA-1:exon:9921;Parent=Msa1386050-mRNA-1
tig0020780	exon	85612	85694	85612	ID=Msa1386050-mRNA-1:exon:9922;Parent=Msa1386050-mRNA-1
tig0020780	exon	85870	85903	85870	ID=Msa1386050-mRNA-1:exon:9923;Parent=Msa1386050-mRNA-1
tig0020780	exon	87047	87124	87047	ID=Msa1386050-mRNA-1:exon:9924;Parent=Msa1386050-mRNA-1
tig0020780	exon	87710	87802	87710	ID=Msa1386050-mRNA-1:exon:9925;Parent=Msa1386050-mRNA-1
tig0020780	exon	87929	88015	87929	ID=Msa1386050-mRNA-1:exon:9926;Parent=Msa1386050-mRNA-1
tig0020780	exon	88945	89046	88945	ID=Msa1386050-mRNA-1:exon:9927;Parent=Msa1386050-mRNA-1
tig0020780	exon	89126	89245	89126	ID=Msa1386050-mRNA-1:exon:9928;Parent=Msa1386050-mRNA-1
tig0020780	exon	89329	89388	89329	ID=Msa1386050-mRNA-1:exon:9929;Parent=Msa1386050-mRNA-1
tig0020780	exon	89895	90043	89895	ID=Msa1386050-mRNA-1:exon:9930;Parent=Msa1386050-mRNA-1
tig0020780	exon	90825	90909	90825	ID=Msa1386050-mRNA-1:exon:9931;Parent=Msa1386050-mRNA-1
tig0020780	exon	91003	91061	91003	ID=Msa1386050-mRNA-1:exon:9932;Parent=Msa1386050-mRNA-1
tig0020780	exon	91171	91216	91171	ID=Msa1386050-mRNA-1:exon:9933;Parent=Msa1386050-mRNA-1
tig0020780	exon	91318	91409	91318	ID=Msa1386050-mRNA-1:exon:9934;Parent=Msa1386050-mRNA-1
tig0020780	exon	91497	91566	91497	ID=Msa1386050-mRNA-1:exon:9935;Parent=Msa1386050-mRNA-1
tig0020780	exon	91667	91857	91667	ID=Msa1386050-mRNA-1:exon:9936;Parent=Msa1386050-mRNA-1
tig0020780	five_prime_UTR	84445	84559	84445	ID=Msa1386050-mRNA-1:five_prime_utr;Parent=Msa1386050-mRNA-1
tig0020780	CDS	84560	84622	84560	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	85011	85118	85011	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	85221	85346	85221	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	85451	85513	85451	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	85612	85694	85612	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	85870	85903	85870	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	87047	87124	87047	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	87710	87802	87710	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	87929	88015	87929	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	88945	89046	88945	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	89126	89245	89126	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	89329	89388	89329	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	89895	90043	89895	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	90825	90909	90825	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	91003	91061	91003	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	91171	91216	91171	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	91318	91409	91318	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	91497	91566	91497	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	CDS	91667	91738	91667	ID=Msa1386050-mRNA-1:cds;Parent=Msa1386050-mRNA-1
tig0020780	three_prime_UTR	91739	91857	91739	ID=Msa1386050-mRNA-1:three_prime_utr;Parent=Msa1386050-mRNA-1

Gene Sequence

>Msa1386050

ATGGCTGCGGTAACACTTCCTTACCAAAACGGAGTCGTTGTGGAGAATACTGATCCGAAGCAGGTTCTTGAACAAGTTGAAATTGAGTATGTACCAGAGAAGGTAGACTTTGAAGGCATGGATGAAGAATTTAGAAAAATATTTGAGAAATTTAGTTTCACTGCTTCAGAGGACACTGATAAGAAGGATGAGGCGGAGAAAACTGCAGCAACTAAAAAGAAAGCTAATTCTGATTCTGATTCTGAAGAAAATGATAACGAGCAAAAAGAAAAAGGCGTATCAAACAAGAAGAAAAAGCTTCAACGAAGAATGAAAATTGCTGAACTGAAACAAGTTAGCTCAAGACCTGATGTTGTTGAGGTTTGGGATGCTACTGCAGCAGATCCTAAGTTGCTGGTGTTTTTGAAATCTTATCGGAACACTGTACCTGTACCTAGGCATTGGGGAGCGGCTGTGGCAATCACCAATCCTGGACTGGGGAAACGAGGTATTGAGAAACAACCCTTTCAACTTCCTGATTTCATTGCTGCCACTGGTATTGAGAAAATCAGACAGGCTTATATTGAGAAAGAGGACAGTAAGAAGTTGAAACAAAAGCAAAGGGAACGTATGCAACCAAAAATGGGAAAAATGGATATAGATTATCAGGTCCTTCATGATGCATTTTTTAAGTACCAAACAAAGCCAAAGCTGACATCCCTTGGGGAGTTGTATCACGAAGGAAAAGAATTTGAGGTAAAGTTGAGGGAGATGAAACCTGGTATGTTATCACACGACTTGAAAGAAGCTCTTGGTATGCCTGAGGGTGCTCCTCCTCCATGGCTTATTAATATGCAGAGATATGGTCCTCCACCATCTTACCCTCAGCTGAAGATCCCAGGACTGAATGCTCCCATACCCGCTGGAGCTAGCTTTGGTTATCATCCTGGTGGATGGGGCAAGCCTCCTGTCGACGAATATGGACGCCCACTATATGGAGATGTTTTTGGTGTTCAACAAGATCAGCCTAACTATGAGGAAGAGCCAGTTGATAAGACTAAACACTGGGGTGATTTGGAGGAGGAGGAGGAGGAAGAAGAGGAAGAAGAAGAGGAGGAGGAGGAAGAAGAAGGAATGGAAGAGGAGGAATTTGAAGATGGTGTTCAGTCTGTTGATAGTCTATCAAGCACTCCTACTGGAGTGGAGACACCTGATGTTATTGACCTACGGAAGCAACAGAGAAATAAGGAGCCTGAGAAGCCTCTTTATCAAGTGCTTGAAGAGAAAGAAGAAAAAATTGGTGCAGGATCTTTACTTGTACCCGGACACACTTATGTGGTTGGCACTGGCACCCAGGATAAATCGGGTGCTAAAAGGGTCGATTTGCTTAAAGGTCAAAAGTCAGATAAAGTGGACGTCACTTTACTGCCGGAAGAGTTGGAAGCCATGGAAAATGTTCTGCCTGCCAAGTATGAGGAAGCTAGGGAGGAAGAGAAGTTGCGTAGTCAGCGAGAAGATTTCAGTGACATGGTTGCAGAGAATGAGAAGAAAAGAAAAAGAAAGATGCAAGAAAAGGACGGCAAGTCGAAGAAGAAGGACTTTAAGTTTTAG

Protein sequence

>Msa1386050

MAAVTLPYQNGVVVENTDPKQVLEQVEIEYVPEKVDFEGMDEEFRKIFEKFSFTASEDTDKKDEAEKTAATKKKANSDSDSEENDNEQKEKGVSNKKKKLQRRMKIAELKQVSSRPDVVEVWDATAADPKLLVFLKSYRNTVPVPRHWGAAVAITNPGLGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGELYHEGKEFEVKLREMKPGMLSHDLKEALGMPEGAPPPWLINMQRYGPPPSYPQLKIPGLNAPIPAGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQDQPNYEEEPVDKTKHWGDLEEEEEEEEEEEEEEEEEEGMEEEEFEDGVQSVDSLSSTPTGVETPDVIDLRKQQRNKEPEKPLYQVLEEKEEKIGAGSLLVPGHTYVVGTGTQDKSGAKRVDLLKGQKSDKVDVTLLPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEKDGKSKKKDFKF*