AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1340880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340880 MtrunA17_Chr2g0320581 93.724 239 15 0 1 239 1 239 1.67e-164 467
Msa1340880 MtrunA17_Chr2g0315161 56.574 251 96 6 10 259 8 246 6.54e-85 263
Msa1340880 MtrunA17_Chr7g0266831 61.224 196 75 1 56 250 66 261 6.32e-80 251
Msa1340880 MtrunA17_Chr7g0266851 61.224 196 75 1 56 250 53 248 4.12e-78 246
Msa1340880 MtrunA17_Chr4g0054411 51.724 203 88 4 56 254 56 252 8.41e-61 202
Msa1340880 MtrunA17_Chr7g0216291 64.474 76 25 1 119 192 3 78 4.23e-26 99.0
Msa1340880 MtrunA17_Chr5g0405091 37.900 219 96 11 11 219 7 195 2.67e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340880 AT5G22860.8 47.619 252 126 3 13 259 8 258 7.23e-71 224
Msa1340880 AT5G22860.2 47.619 252 126 3 13 259 8 258 9.31e-70 223
Msa1340880 AT5G22860.3 47.619 252 126 3 13 259 8 258 9.31e-70 223
Msa1340880 AT5G22860.4 47.619 252 126 3 13 259 8 258 1.45e-69 224
Msa1340880 AT5G22860.1 47.619 252 126 3 13 259 8 258 3.37e-69 224
Msa1340880 AT5G22860.7 47.619 252 126 3 13 259 8 258 3.68e-69 223
Msa1340880 AT5G22860.5 47.619 252 126 3 13 259 8 258 3.68e-69 223
Msa1340880 AT5G22860.6 47.619 252 126 3 13 259 8 258 3.68e-69 223
Msa1340880 AT2G24280.2 47.967 246 108 4 11 250 5 236 6.35e-68 218
Msa1340880 AT2G24280.1 54.872 195 83 2 56 250 47 236 2.05e-67 219
Msa1340880 AT5G65760.1 53.846 195 88 1 56 250 59 251 9.90e-66 215
Msa1340880 AT4G36195.2 36.257 171 89 6 56 218 46 204 5.86e-20 90.5
Msa1340880 AT4G36195.3 36.416 173 86 6 56 218 46 204 6.08e-20 90.5
Msa1340880 AT4G36195.1 36.416 173 86 6 56 218 46 204 6.08e-20 90.5
Msa1340880 AT4G36190.1 38.286 175 80 9 56 218 46 204 1.61e-19 89.4
Msa1340880 AT2G18080.1 32.407 216 124 7 58 263 48 251 6.56e-19 87.4
Msa1340880 AT3G28680.1 56.000 50 22 0 190 239 18 67 1.24e-11 63.2

Find 54 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGTTGCAATGTCGTTTA+AGG 0.140246 tig0004541:-15606 Msa1340880:intergenic
ATATACTAAAAGAGCTTTAA+AGG 0.168188 tig0004541:-15855 Msa1340880:intergenic
ATTTGATCAATTTCAAATAT+TGG 0.182290 tig0004541:+15729 Msa1340880:CDS
TCACAATTACTGGGGAGTTT+TGG 0.211706 tig0004541:-16152 Msa1340880:intergenic
TTTGATCAATTTCAAATATT+GGG 0.216568 tig0004541:+15730 Msa1340880:CDS
TAAAATGTTTCAACATCTTT+TGG 0.224312 tig0004541:-15641 Msa1340880:intergenic
AAAGTTATTCTCCTTATAAT+TGG 0.237681 tig0004541:+15460 Msa1340880:five_prime_UTR
TTATATCAGCATCGGTATTA+TGG 0.238679 tig0004541:+16000 Msa1340880:intron
TCACTTGGCCATTGGTGCTT+TGG 0.266851 tig0004541:+16528 Msa1340880:CDS
TTTCATTGCAACCAATTATA+AGG 0.267506 tig0004541:-15471 Msa1340880:intergenic
GATCCTCCAATCACAATTAC+TGG 0.319018 tig0004541:-16162 Msa1340880:intergenic
CAGTGCTTGCTGCATGGTTT+AGG 0.320590 tig0004541:+16494 Msa1340880:intron
TGCTCCAATATTTGTCTACT+TGG 0.333285 tig0004541:+15769 Msa1340880:CDS
TCTTTCATTCATAGTTGAAT+TGG 0.336976 tig0004541:+15424 None:intergenic
GAACCATCTATTGCTTGTTC+TGG 0.339066 tig0004541:-15794 Msa1340880:intergenic
GGACCCAAGTAGACAAATAT+TGG 0.343910 tig0004541:-15773 Msa1340880:intergenic
TGACTAAATCAAAACAATAA+TGG 0.383271 tig0004541:+16855 Msa1340880:exon
CTAAAAGTTGTATGTTTACA+AGG 0.408144 tig0004541:-16736 Msa1340880:intergenic
CTTAAACGACATTGCAACCT+TGG 0.412069 tig0004541:+15607 Msa1340880:CDS
TATGGAAAATCAATACCGTT+TGG 0.413960 tig0004541:+16018 Msa1340880:CDS
TTAAATGTATTATAGCTTTG+TGG 0.421207 tig0004541:-15698 Msa1340880:intergenic
GATGGTTCTCCTAAGGGTAT+AGG 0.432542 tig0004541:+15809 Msa1340880:CDS
AACTCCCCAGTAATTGTGAT+TGG 0.451013 tig0004541:+16156 Msa1340880:CDS
ACAACATCGAAATAAGCATT+TGG 0.451510 tig0004541:-16592 Msa1340880:intergenic
TAGGAGTGGGATTGATAGAA+TGG 0.473688 tig0004541:-15538 Msa1340880:intergenic
ACTAAAAGAGCTTTAAAGGT+TGG 0.474337 tig0004541:-15851 Msa1340880:intergenic
GGTCCAGAACAAGCAATAGA+TGG 0.474492 tig0004541:+15791 Msa1340880:CDS
GCTCCAATATTTGTCTACTT+GGG 0.484351 tig0004541:+15770 Msa1340880:CDS
AGCAATAGATGGTTCTCCTA+AGG 0.489568 tig0004541:+15802 Msa1340880:CDS
GCCATGTGAACAAGTTGAAA+TGG 0.491904 tig0004541:-15496 Msa1340880:intergenic
AAATATCCTCACTTGGCCAT+TGG 0.510773 tig0004541:+16520 Msa1340880:CDS
TTCAAGAATGCAAACACACT+TGG 0.510819 tig0004541:+16057 Msa1340880:CDS
AGACGAGGCCAAAGCACCAA+TGG 0.515427 tig0004541:-16536 Msa1340880:intergenic
ATCAATTTCAAATATTGGGG+TGG 0.520871 tig0004541:+15734 Msa1340880:CDS
ATATCATCAAAGTAGAGGAT+TGG 0.521474 tig0004541:-16562 Msa1340880:intergenic
TTGATCAATTTCAAATATTG+GGG 0.533645 tig0004541:+15731 Msa1340880:CDS
ATCCTCCAATCACAATTACT+GGG 0.536985 tig0004541:-16161 Msa1340880:intergenic
GCAATAGATGGTTCTCCTAA+GGG 0.537093 tig0004541:+15803 Msa1340880:CDS
TGTCAATGAGTGTGTAGGAG+TGG 0.553790 tig0004541:-15552 Msa1340880:intergenic
TCCCCAGTAATTGTGATTGG+AGG 0.556726 tig0004541:+16159 Msa1340880:CDS
ACCATTTCAACTTGTTCACA+TGG 0.558388 tig0004541:+15495 Msa1340880:CDS
TAGGCTCAAATATCCTCACT+TGG 0.561155 tig0004541:+16513 Msa1340880:CDS
ATTGTGATTGGAGGATCATA+TGG 0.568935 tig0004541:+16168 Msa1340880:CDS
GCTTCTTCTCTTGATCCAAA+CGG 0.572228 tig0004541:-16033 Msa1340880:intergenic
TCGTCGAATGGAGATAACCT+TGG 0.586295 tig0004541:-15578 Msa1340880:intergenic
GTCAATGAGTGTGTAGGAGT+GGG 0.593257 tig0004541:-15551 Msa1340880:intergenic
TATACACAGTGCTTGCTGCA+TGG 0.596133 tig0004541:+16488 Msa1340880:intron
GTAGAGGATTGGAGCAGACG+AGG 0.605838 tig0004541:-16551 Msa1340880:intergenic
ATGTAATATCATCAAAGTAG+AGG 0.625566 tig0004541:-16567 Msa1340880:intergenic
GGTATTGTCAATGAGTGTGT+AGG 0.656725 tig0004541:-15557 Msa1340880:intergenic
AAAGCACCAATGGCCAAGTG+AGG 0.660296 tig0004541:-16526 Msa1340880:intergenic
GTGATTGGAGGATCATATGG+TGG 0.676251 tig0004541:+16171 Msa1340880:CDS
CACACTCATTGACAATACCA+AGG 0.695882 tig0004541:+15561 Msa1340880:CDS
TCCTCCAATCACAATTACTG+GGG 0.714063 tig0004541:-16160 Msa1340870:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACTAAATAAAAGAATA+CGG - tig0004541:16416-16435 Msa1340880:intergenic 10.0%
!!! AAAAAATTAGTTTATTTACA+GGG - tig0004541:16678-16697 Msa1340880:intergenic 10.0%
!!! CTAATTTTTTCTTTAAAATT+TGG + tig0004541:16688-16707 Msa1340880:CDS 10.0%
!! AAAAACTAAATAAAAGAATA+CGG - tig0004541:16416-16435 Msa1340880:intergenic 10.0%
!!! AAAAAATTAGTTTATTTACA+GGG - tig0004541:16678-16697 Msa1340880:intergenic 10.0%
!!! CTAATTTTTTCTTTAAAATT+TGG + tig0004541:16688-16707 Msa1340880:CDS 10.0%
!! ATTTGATCAATTTCAAATAT+TGG + tig0004541:15729-15748 Msa1340880:CDS 15.0%
!! TTTGATCAATTTCAAATATT+GGG + tig0004541:15730-15749 Msa1340880:CDS 15.0%
!!! TAATAATTTTATATCAGCAT+CGG + tig0004541:15992-16011 Msa1340880:intron 15.0%
!!! TAAAGGTTTTTGAATTTTTT+AGG - tig0004541:16353-16372 Msa1340880:intergenic 15.0%
!!! GAAAAAATTAGTTTATTTAC+AGG - tig0004541:16679-16698 Msa1340880:intergenic 15.0%
!!! AAATCTATTCATTTTGAAAT+TGG - tig0004541:16830-16849 Msa1340880:intergenic 15.0%
!! ATTTGATCAATTTCAAATAT+TGG + tig0004541:15729-15748 Msa1340880:CDS 15.0%
!! TTTGATCAATTTCAAATATT+GGG + tig0004541:15730-15749 Msa1340880:CDS 15.0%
!!! TAATAATTTTATATCAGCAT+CGG + tig0004541:15992-16011 Msa1340880:intron 15.0%
!!! TAAAGGTTTTTGAATTTTTT+AGG - tig0004541:16353-16372 Msa1340880:intergenic 15.0%
!!! GAAAAAATTAGTTTATTTAC+AGG - tig0004541:16679-16698 Msa1340880:intergenic 15.0%
!!! AAATCTATTCATTTTGAAAT+TGG - tig0004541:16830-16849 Msa1340880:intergenic 15.0%
!! AAAGTTATTCTCCTTATAAT+TGG + tig0004541:15460-15479 Msa1340880:five_prime_UTR 20.0%
!!! TAAAATGTTTCAACATCTTT+TGG - tig0004541:15644-15663 Msa1340880:intergenic 20.0%
!!! TTAAATGTATTATAGCTTTG+TGG - tig0004541:15701-15720 Msa1340880:intergenic 20.0%
!! TTGATCAATTTCAAATATTG+GGG + tig0004541:15731-15750 Msa1340880:CDS 20.0%
!!! ATATACTAAAAGAGCTTTAA+AGG - tig0004541:15858-15877 Msa1340880:intergenic 20.0%
!! AAAAAAATATTGCTAGCAAA+GGG - tig0004541:15914-15933 Msa1340880:intergenic 20.0%
!! TAAAAAAATATTGCTAGCAA+AGG - tig0004541:15915-15934 Msa1340880:intergenic 20.0%
!! CAATCTTAATCATAACATAA+AGG - tig0004541:16370-16389 Msa1340880:intergenic 20.0%
!!! TAATTTTAGTCCTTATTTTG+AGG + tig0004541:16771-16790 Msa1340880:CDS 20.0%
!!! AATTTTAGTCCTTATTTTGA+GGG + tig0004541:16772-16791 Msa1340880:CDS 20.0%
!! TGACTAAATCAAAACAATAA+TGG + tig0004541:16855-16874 Msa1340880:exon 20.0%
!!! AACACTTTTTGTTTTGTTTT+TGG - tig0004541:16881-16900 Msa1340880:intergenic 20.0%
!! AAAGTTATTCTCCTTATAAT+TGG + tig0004541:15460-15479 Msa1340880:five_prime_UTR 20.0%
!!! TAAAATGTTTCAACATCTTT+TGG - tig0004541:15644-15663 Msa1340880:intergenic 20.0%
!!! TTAAATGTATTATAGCTTTG+TGG - tig0004541:15701-15720 Msa1340880:intergenic 20.0%
!! TTGATCAATTTCAAATATTG+GGG + tig0004541:15731-15750 Msa1340880:CDS 20.0%
!!! ATATACTAAAAGAGCTTTAA+AGG - tig0004541:15858-15877 Msa1340880:intergenic 20.0%
!! AAAAAAATATTGCTAGCAAA+GGG - tig0004541:15914-15933 Msa1340880:intergenic 20.0%
!! TAAAAAAATATTGCTAGCAA+AGG - tig0004541:15915-15934 Msa1340880:intergenic 20.0%
!! CAATCTTAATCATAACATAA+AGG - tig0004541:16370-16389 Msa1340880:intergenic 20.0%
!!! TAATTTTAGTCCTTATTTTG+AGG + tig0004541:16771-16790 Msa1340880:CDS 20.0%
!!! AATTTTAGTCCTTATTTTGA+GGG + tig0004541:16772-16791 Msa1340880:CDS 20.0%
!! TGACTAAATCAAAACAATAA+TGG + tig0004541:16855-16874 Msa1340880:exon 20.0%
!!! AACACTTTTTGTTTTGTTTT+TGG - tig0004541:16881-16900 Msa1340880:intergenic 20.0%
! TTTCATTGCAACCAATTATA+AGG - tig0004541:15474-15493 Msa1340880:intergenic 25.0%
!!! TATAGGATTTTTGGTAGAAA+AGG + tig0004541:15826-15845 Msa1340880:CDS 25.0%
!! AGCTCTTTTAGTATATATAG+AGG + tig0004541:15862-15881 Msa1340880:CDS 25.0%
! TATGATTAAGATTGTGATAG+TGG + tig0004541:16376-16395 Msa1340880:intron 25.0%
! ATGTAATATCATCAAAGTAG+AGG - tig0004541:16570-16589 Msa1340880:intergenic 25.0%
! CTAAAAGTTGTATGTTTACA+AGG - tig0004541:16739-16758 Msa1340880:intergenic 25.0%
!!! AATTTTAGTCCCTCAAAATA+AGG - tig0004541:16784-16803 Msa1340880:intergenic 25.0%
! TTTCATTGCAACCAATTATA+AGG - tig0004541:15474-15493 Msa1340880:intergenic 25.0%
!!! TATAGGATTTTTGGTAGAAA+AGG + tig0004541:15826-15845 Msa1340880:CDS 25.0%
!! AGCTCTTTTAGTATATATAG+AGG + tig0004541:15862-15881 Msa1340880:CDS 25.0%
! TATGATTAAGATTGTGATAG+TGG + tig0004541:16376-16395 Msa1340880:intron 25.0%
! ATGTAATATCATCAAAGTAG+AGG - tig0004541:16570-16589 Msa1340880:intergenic 25.0%
! CTAAAAGTTGTATGTTTACA+AGG - tig0004541:16739-16758 Msa1340880:intergenic 25.0%
!!! AATTTTAGTCCCTCAAAATA+AGG - tig0004541:16784-16803 Msa1340880:intergenic 25.0%
GAATGGATGAAAAATATGAG+AGG - tig0004541:15524-15543 Msa1340880:intergenic 30.0%
!!! TTTAAGGTTTTTTCGTCGAA+TGG - tig0004541:15593-15612 Msa1340880:intergenic 30.0%
ATCAATTTCAAATATTGGGG+TGG + tig0004541:15734-15753 Msa1340880:CDS 30.0%
!! ACTAAAAGAGCTTTAAAGGT+TGG - tig0004541:15854-15873 Msa1340880:intergenic 30.0%
!! TTATATCAGCATCGGTATTA+TGG + tig0004541:16000-16019 Msa1340880:intron 30.0%
TATGGAAAATCAATACCGTT+TGG + tig0004541:16018-16037 Msa1340880:CDS 30.0%
!!! CACACTTGGATATTTTAACT+CGG + tig0004541:16071-16090 Msa1340880:CDS 30.0%
TTACCATGTAACCTCAAATA+TGG + tig0004541:16309-16328 Msa1340880:intron 30.0%
ATATCATCAAAGTAGAGGAT+TGG - tig0004541:16565-16584 Msa1340880:intergenic 30.0%
ACAACATCGAAATAAGCATT+TGG - tig0004541:16595-16614 Msa1340880:intergenic 30.0%
GAATGGATGAAAAATATGAG+AGG - tig0004541:15524-15543 Msa1340880:intergenic 30.0%
!!! TTTAAGGTTTTTTCGTCGAA+TGG - tig0004541:15593-15612 Msa1340880:intergenic 30.0%
ATCAATTTCAAATATTGGGG+TGG + tig0004541:15734-15753 Msa1340880:CDS 30.0%
!! ACTAAAAGAGCTTTAAAGGT+TGG - tig0004541:15854-15873 Msa1340880:intergenic 30.0%
!! TTATATCAGCATCGGTATTA+TGG + tig0004541:16000-16019 Msa1340880:intron 30.0%
TATGGAAAATCAATACCGTT+TGG + tig0004541:16018-16037 Msa1340880:CDS 30.0%
!!! CACACTTGGATATTTTAACT+CGG + tig0004541:16071-16090 Msa1340880:CDS 30.0%
TTACCATGTAACCTCAAATA+TGG + tig0004541:16309-16328 Msa1340880:intron 30.0%
ATATCATCAAAGTAGAGGAT+TGG - tig0004541:16565-16584 Msa1340880:intergenic 30.0%
ACAACATCGAAATAAGCATT+TGG - tig0004541:16595-16614 Msa1340880:intergenic 30.0%
! ACCATTTCAACTTGTTCACA+TGG + tig0004541:15495-15514 Msa1340880:CDS 35.0%
! TTCAACATCTTTTGGATCAG+TGG - tig0004541:15636-15655 Msa1340880:intergenic 35.0%
TGCTCCAATATTTGTCTACT+TGG + tig0004541:15769-15788 Msa1340880:CDS 35.0%
GCTCCAATATTTGTCTACTT+GGG + tig0004541:15770-15789 Msa1340880:CDS 35.0%
!! TCCTAAGGGTATAGGATTTT+TGG + tig0004541:15817-15836 Msa1340880:CDS 35.0%
ACCAAAAATCCTATACCCTT+AGG - tig0004541:15821-15840 Msa1340880:intergenic 35.0%
TTCAAGAATGCAAACACACT+TGG + tig0004541:16057-16076 Msa1340880:CDS 35.0%
ATCCTCCAATCACAATTACT+GGG - tig0004541:16164-16183 Msa1340880:intergenic 35.0%
ATTGTGATTGGAGGATCATA+TGG + tig0004541:16168-16187 Msa1340880:CDS 35.0%
TGTCGCAATATTTGATGTTG+CGG + tig0004541:16269-16288 Msa1340880:intron 35.0%
!! GGTTACATGGTAACGTTTTA+TGG - tig0004541:16302-16321 Msa1340880:intergenic 35.0%
! CAACCATATTTGAGGTTACA+TGG - tig0004541:16315-16334 Msa1340880:intergenic 35.0%
AGCAATCACAACCATATTTG+AGG - tig0004541:16323-16342 Msa1340880:intergenic 35.0%
! ACCATTTCAACTTGTTCACA+TGG + tig0004541:15495-15514 Msa1340880:CDS 35.0%
! TTCAACATCTTTTGGATCAG+TGG - tig0004541:15636-15655 Msa1340880:intergenic 35.0%
TGCTCCAATATTTGTCTACT+TGG + tig0004541:15769-15788 Msa1340880:CDS 35.0%
GCTCCAATATTTGTCTACTT+GGG + tig0004541:15770-15789 Msa1340880:CDS 35.0%
!! TCCTAAGGGTATAGGATTTT+TGG + tig0004541:15817-15836 Msa1340880:CDS 35.0%
ACCAAAAATCCTATACCCTT+AGG - tig0004541:15821-15840 Msa1340880:intergenic 35.0%
TTCAAGAATGCAAACACACT+TGG + tig0004541:16057-16076 Msa1340880:CDS 35.0%
ATCCTCCAATCACAATTACT+GGG - tig0004541:16164-16183 Msa1340880:intergenic 35.0%
ATTGTGATTGGAGGATCATA+TGG + tig0004541:16168-16187 Msa1340880:CDS 35.0%
TGTCGCAATATTTGATGTTG+CGG + tig0004541:16269-16288 Msa1340880:intron 35.0%
!! GGTTACATGGTAACGTTTTA+TGG - tig0004541:16302-16321 Msa1340880:intergenic 35.0%
! CAACCATATTTGAGGTTACA+TGG - tig0004541:16315-16334 Msa1340880:intergenic 35.0%
AGCAATCACAACCATATTTG+AGG - tig0004541:16323-16342 Msa1340880:intergenic 35.0%
! GCCATGTGAACAAGTTGAAA+TGG - tig0004541:15499-15518 Msa1340880:intergenic 40.0%
TAGGAGTGGGATTGATAGAA+TGG - tig0004541:15541-15560 Msa1340880:intergenic 40.0%
GGTATTGTCAATGAGTGTGT+AGG - tig0004541:15560-15579 Msa1340880:intergenic 40.0%
CACACTCATTGACAATACCA+AGG + tig0004541:15561-15580 Msa1340880:CDS 40.0%
! CAAGGTTGCAATGTCGTTTA+AGG - tig0004541:15609-15628 Msa1340880:intergenic 40.0%
CTTAAACGACATTGCAACCT+TGG + tig0004541:15607-15626 Msa1340880:CDS 40.0%
! TTTTGGATCAGTGGAAACCA+AGG - tig0004541:15627-15646 Msa1340880:intergenic 40.0%
GGACCCAAGTAGACAAATAT+TGG - tig0004541:15776-15795 Msa1340880:intergenic 40.0%
GAACCATCTATTGCTTGTTC+TGG - tig0004541:15797-15816 Msa1340880:intergenic 40.0%
AGCAATAGATGGTTCTCCTA+AGG + tig0004541:15802-15821 Msa1340880:CDS 40.0%
GCAATAGATGGTTCTCCTAA+GGG + tig0004541:15803-15822 Msa1340880:CDS 40.0%
GCTTCTTCTCTTGATCCAAA+CGG - tig0004541:16036-16055 Msa1340880:intergenic 40.0%
! CACAATTACTGGGGAGTTTT+GGG - tig0004541:16154-16173 Msa1340880:intergenic 40.0%
! TCACAATTACTGGGGAGTTT+TGG - tig0004541:16155-16174 Msa1340880:intergenic 40.0%
AACTCCCCAGTAATTGTGAT+TGG + tig0004541:16156-16175 Msa1340880:CDS 40.0%
TCCTCCAATCACAATTACTG+GGG - tig0004541:16163-16182 Msa1340880:intergenic 40.0%
GATCCTCCAATCACAATTAC+TGG - tig0004541:16165-16184 Msa1340880:intergenic 40.0%
TAGGCTCAAATATCCTCACT+TGG + tig0004541:16513-16532 Msa1340880:CDS 40.0%
AAATATCCTCACTTGGCCAT+TGG + tig0004541:16520-16539 Msa1340880:CDS 40.0%
! GCCATGTGAACAAGTTGAAA+TGG - tig0004541:15499-15518 Msa1340880:intergenic 40.0%
TAGGAGTGGGATTGATAGAA+TGG - tig0004541:15541-15560 Msa1340880:intergenic 40.0%
GGTATTGTCAATGAGTGTGT+AGG - tig0004541:15560-15579 Msa1340880:intergenic 40.0%
CACACTCATTGACAATACCA+AGG + tig0004541:15561-15580 Msa1340880:CDS 40.0%
! CAAGGTTGCAATGTCGTTTA+AGG - tig0004541:15609-15628 Msa1340880:intergenic 40.0%
CTTAAACGACATTGCAACCT+TGG + tig0004541:15607-15626 Msa1340880:CDS 40.0%
! TTTTGGATCAGTGGAAACCA+AGG - tig0004541:15627-15646 Msa1340880:intergenic 40.0%
GGACCCAAGTAGACAAATAT+TGG - tig0004541:15776-15795 Msa1340880:intergenic 40.0%
GAACCATCTATTGCTTGTTC+TGG - tig0004541:15797-15816 Msa1340880:intergenic 40.0%
AGCAATAGATGGTTCTCCTA+AGG + tig0004541:15802-15821 Msa1340880:CDS 40.0%
GCAATAGATGGTTCTCCTAA+GGG + tig0004541:15803-15822 Msa1340880:CDS 40.0%
GCTTCTTCTCTTGATCCAAA+CGG - tig0004541:16036-16055 Msa1340880:intergenic 40.0%
! CACAATTACTGGGGAGTTTT+GGG - tig0004541:16154-16173 Msa1340880:intergenic 40.0%
! TCACAATTACTGGGGAGTTT+TGG - tig0004541:16155-16174 Msa1340880:intergenic 40.0%
AACTCCCCAGTAATTGTGAT+TGG + tig0004541:16156-16175 Msa1340880:CDS 40.0%
TCCTCCAATCACAATTACTG+GGG - tig0004541:16163-16182 Msa1340880:intergenic 40.0%
GATCCTCCAATCACAATTAC+TGG - tig0004541:16165-16184 Msa1340880:intergenic 40.0%
TAGGCTCAAATATCCTCACT+TGG + tig0004541:16513-16532 Msa1340880:CDS 40.0%
AAATATCCTCACTTGGCCAT+TGG + tig0004541:16520-16539 Msa1340880:CDS 40.0%
GTCAATGAGTGTGTAGGAGT+GGG - tig0004541:15554-15573 Msa1340880:intergenic 45.0%
TGTCAATGAGTGTGTAGGAG+TGG - tig0004541:15555-15574 Msa1340880:intergenic 45.0%
TCGTCGAATGGAGATAACCT+TGG - tig0004541:15581-15600 Msa1340880:intergenic 45.0%
GGTCCAGAACAAGCAATAGA+TGG + tig0004541:15791-15810 Msa1340880:CDS 45.0%
! GATGGTTCTCCTAAGGGTAT+AGG + tig0004541:15809-15828 Msa1340880:CDS 45.0%
TCCCCAGTAATTGTGATTGG+AGG + tig0004541:16159-16178 Msa1340880:CDS 45.0%
GTGATTGGAGGATCATATGG+TGG + tig0004541:16171-16190 Msa1340880:CDS 45.0%
! TATACACAGTGCTTGCTGCA+TGG + tig0004541:16488-16507 Msa1340880:intron 45.0%
GTCAATGAGTGTGTAGGAGT+GGG - tig0004541:15554-15573 Msa1340880:intergenic 45.0%
TGTCAATGAGTGTGTAGGAG+TGG - tig0004541:15555-15574 Msa1340880:intergenic 45.0%
TCGTCGAATGGAGATAACCT+TGG - tig0004541:15581-15600 Msa1340880:intergenic 45.0%
GGTCCAGAACAAGCAATAGA+TGG + tig0004541:15791-15810 Msa1340880:CDS 45.0%
! GATGGTTCTCCTAAGGGTAT+AGG + tig0004541:15809-15828 Msa1340880:CDS 45.0%
TCCCCAGTAATTGTGATTGG+AGG + tig0004541:16159-16178 Msa1340880:CDS 45.0%
GTGATTGGAGGATCATATGG+TGG + tig0004541:16171-16190 Msa1340880:CDS 45.0%
! TATACACAGTGCTTGCTGCA+TGG + tig0004541:16488-16507 Msa1340880:intron 45.0%
! CAGTGCTTGCTGCATGGTTT+AGG + tig0004541:16494-16513 Msa1340880:intron 50.0%
! AAAGCACCAATGGCCAAGTG+AGG - tig0004541:16529-16548 Msa1340880:intergenic 50.0%
! TCACTTGGCCATTGGTGCTT+TGG + tig0004541:16528-16547 Msa1340880:CDS 50.0%
! CAGTGCTTGCTGCATGGTTT+AGG + tig0004541:16494-16513 Msa1340880:intron 50.0%
! AAAGCACCAATGGCCAAGTG+AGG - tig0004541:16529-16548 Msa1340880:intergenic 50.0%
! TCACTTGGCCATTGGTGCTT+TGG + tig0004541:16528-16547 Msa1340880:CDS 50.0%
! AGACGAGGCCAAAGCACCAA+TGG - tig0004541:16539-16558 Msa1340880:intergenic 55.0%
GTAGAGGATTGGAGCAGACG+AGG - tig0004541:16554-16573 Msa1340880:intergenic 55.0%
! AGACGAGGCCAAAGCACCAA+TGG - tig0004541:16539-16558 Msa1340880:intergenic 55.0%
GTAGAGGATTGGAGCAGACG+AGG - tig0004541:16554-16573 Msa1340880:intergenic 55.0%
GCGCGCACGCGTTTGTGTTT+GGG - tig0004541:16232-16251 Msa1340880:intergenic 60.0%
TGCGCGCACGCGTTTGTGTT+TGG - tig0004541:16233-16252 Msa1340880:intergenic 60.0%
GCGCGCACGCGTTTGTGTTT+GGG - tig0004541:16232-16251 Msa1340880:intergenic 60.0%
TGCGCGCACGCGTTTGTGTT+TGG - tig0004541:16233-16252 Msa1340880:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0004541 gene 15430 16915 15430 ID=Msa1340880;Name=Msa1340880
tig0004541 mRNA 15430 16915 15430 ID=Msa1340880-mRNA-1;Parent=Msa1340880;Name=Msa1340880-mRNA-1;_AED=0.11;_eAED=0.11;_QI=58|1|1|1|1|1|3|54|315
tig0004541 exon 15430 15883 15430 ID=Msa1340880-mRNA-1:exon:2880;Parent=Msa1340880-mRNA-1
tig0004541 exon 16009 16195 16009 ID=Msa1340880-mRNA-1:exon:2881;Parent=Msa1340880-mRNA-1
tig0004541 exon 16497 16915 16497 ID=Msa1340880-mRNA-1:exon:2882;Parent=Msa1340880-mRNA-1
tig0004541 five_prime_UTR 15430 15487 15430 ID=Msa1340880-mRNA-1:five_prime_utr;Parent=Msa1340880-mRNA-1
tig0004541 CDS 15488 15883 15488 ID=Msa1340880-mRNA-1:cds;Parent=Msa1340880-mRNA-1
tig0004541 CDS 16009 16195 16009 ID=Msa1340880-mRNA-1:cds;Parent=Msa1340880-mRNA-1
tig0004541 CDS 16497 16861 16497 ID=Msa1340880-mRNA-1:cds;Parent=Msa1340880-mRNA-1
tig0004541 three_prime_UTR 16862 16915 16862 ID=Msa1340880-mRNA-1:three_prime_utr;Parent=Msa1340880-mRNA-1
Gene Sequence

>Msa1340880

ATGAAACACCATTTCAACTTGTTCACATGGCTTCCTCTCATATTTTTCATCCATTCTATCAATCCCACTCCTACACACTCATTGACAATACCAAGGTTATCTCCATTCGACGAAAAAACCTTAAACGACATTGCAACCTTGGTTTCCACTGATCCAAAAGATGTTGAAACATTTTACTACAAACAAGTTCTTGATCACTTCAACTATAATCCACAAAGCTATAATACATTTAATCAAAGATATTTGATCAATTTCAAATATTGGGGTGGTGCAAATTCTAGTGCTCCAATATTTGTCTACTTGGGTCCAGAACAAGCAATAGATGGTTCTCCTAAGGGTATAGGATTTTTGGTAGAAAAGGCACCAACCTTTAAAGCTCTTTTAGTATATATAGAGCATCGGTATTATGGAAAATCAATACCGTTTGGATCAAGAGAAGAAGCGTTCAAGAATGCAAACACACTTGGATATTTTAACTCGGCTCAAGCACTTGCAGATTATGCAGAAGTGATCATAGACATAAAGAAGACATTGCATGCCCAAAACTCCCCAGTAATTGTGATTGGAGGATCATATGGTGGAATGCTTGCTGCATGGTTTAGGCTCAAATATCCTCACTTGGCCATTGGTGCTTTGGCCTCGTCTGCTCCAATCCTCTACTTTGATGATATTACATCACCAAATGCTTATTTCGATGTTGTTTCAAGAGATTTCAAAGTAACTTTACTTAGTTTCTTTTTTTTATTGAAATATGATTTAGTCCCTGTAAATAAACTAATTTTTTCTTTAAAATTTGGAAAAATATTTCTTTTTATTTTTAGTCCTTGTAAACATACAACTTTTAGTCTCTATAATATTAATTTTAGTCCTTATTTTGAGGGACTAAAATTAGATAGTCTACATATTTCAATGACCAATTTCAAAATGAATAGATTTTTCAATGACTAA

Protein sequence

>Msa1340880

MKHHFNLFTWLPLIFFIHSINPTPTHSLTIPRLSPFDEKTLNDIATLVSTDPKDVETFYYKQVLDHFNYNPQSYNTFNQRYLINFKYWGGANSSAPIFVYLGPEQAIDGSPKGIGFLVEKAPTFKALLVYIEHRYYGKSIPFGSREEAFKNANTLGYFNSAQALADYAEVIIDIKKTLHAQNSPVIVIGGSYGGMLAAWFRLKYPHLAIGALASSAPILYFDDITSPNAYFDVVSRDFKVTLLSFFFLLKYDLVPVNKLIFSLKFGKIFLFIFSPCKHTTFSLYNINFSPYFEGLKLDSLHISMTNFKMNRFFND*