AlfalfaGEDB | Msa0883390

M. sativa cultivar zhongmu-4 / Msa0883390

KEGG: -
GO: -
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0883390	XP_024642163.2	72.845	928	72	11	1	748	151	1078	0.0	1173
Msa0883390	XP_024642163.2	78.406	389	72	3	748	1124	31	419	6.85e-167	533

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0883390	sp\|Q6JN46\|EIX2_SOLLC	33.596	887	421	27	6	743	128	995	1.46e-96	333
Msa0883390	sp\|Q6JN46\|EIX2_SOLLC	26.105	950	513	31	7	903	104	917	1.89e-30	134
Msa0883390	sp\|Q6JN46\|EIX2_SOLLC	34.897	341	158	16	757	1086	37	324	1.31e-25	118
Msa0883390	sp\|Q6JN46\|EIX2_SOLLC	27.014	633	369	23	3	566	301	909	1.27e-20	102

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005690	Msa0883390	0.822247	2.622879e-53	-8.615850e-47
Msa0006700	Msa0883390	0.835983	1.221462e-56	-8.615850e-47
Msa0007230	Msa0883390	0.822120	2.807205e-53	-8.615850e-47
Msa0011760	Msa0883390	0.831686	1.450148e-55	-8.615850e-47
Msa0012780	Msa0883390	-0.808573	2.898500e-50	-8.615850e-47
Msa0014120	Msa0883390	0.810660	1.032340e-50	-8.615850e-47
Msa0014790	Msa0883390	0.866715	2.327788e-65	-8.615850e-47
Msa0017420	Msa0883390	0.838085	3.545736e-57	-8.615850e-47
Msa0021980	Msa0883390	0.869376	3.243585e-66	-8.615850e-47
Msa0025690	Msa0883390	0.822630	2.136975e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0883390	MtrunA17_Chr6g0463251	72.845	928	72	11	1	748	151	1078	0.0	1173
Msa0883390	MtrunA17_Chr6g0463251	78.406	389	72	3	748	1124	31	419	6.30e-171	533
Msa0883390	MtrunA17_Chr6g0463281	71.194	913	81	11	1	748	223	1118	0.0	1106
Msa0883390	MtrunA17_Chr6g0463281	78.293	410	56	1	748	1124	82	491	1.56e-178	554
Msa0883390	MtrunA17_Chr6g0463301	69.625	879	85	11	1	699	172	1048	0.0	1038
Msa0883390	MtrunA17_Chr6g0463301	77.073	410	59	2	748	1124	31	438	1.98e-174	541
Msa0883390	MtrunA17_Chr6g0463291	63.194	720	127	12	126	748	39	717	0.0	771
Msa0883390	MtrunA17_Chr6g0463291	27.111	675	380	26	17	640	118	731	4.96e-25	112
Msa0883390	MtrunA17_Chr6g0463291	75.229	109	27	0	1016	1124	2	110	5.96e-23	105
Msa0883390	MtrunA17_Chr3g0106171	40.068	881	340	19	6	741	140	977	1.19e-162	508

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0883390	AT2G34930.1	29.492	807	412	25	8	688	128	903	8.83e-67	243
Msa0883390	AT2G34930.1	26.743	703	376	26	6	627	260	904	1.46e-27	121
Msa0883390	AT2G34930.1	31.899	395	212	18	759	1118	37	409	6.77e-19	93.2
Msa0883390	AT2G34930.1	24.213	508	278	16	254	669	67	559	1.31e-12	72.8
Msa0883390	AT4G20140.1	28.719	773	432	21	7	696	133	869	8.29e-46	180
Msa0883390	AT4G20140.1	30.599	451	255	8	219	669	78	470	1.02e-32	138
Msa0883390	AT4G20140.1	32.971	276	153	11	818	1084	187	439	2.63e-14	78.6
Msa0883390	AT4G36180.1	29.485	719	359	22	6	685	129	738	1.45e-45	179
Msa0883390	AT4G36180.1	26.788	713	416	21	218	919	98	715	1.35e-33	141
Msa0883390	AT4G36180.1	25.856	584	333	15	392	928	97	627	2.99e-21	101

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Find 200 sgRNAs with CRISPR-Local

Find 611 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACCAACAACAAACT+TGG	0.508137	6_1:-34381681	Msa0883390:CDS
AAAGGAGGAACCCAACTAAG+GGG	0.676979	6_1:+34382052	None:intergenic
AACATACCTTTATTCTGGAA+AGG	0.515459	6_1:-34381140	Msa0883390:CDS
AACCTCAACTCTCTTAAGTT+CGG	0.473328	6_1:+34382955	None:intergenic
AACCTCAACTCTCTTAAGTT+TGG	0.317929	6_1:+34373696	None:intergenic
AACTGCGGCTACCTGGAAAT+TGG	0.226314	6_1:+34373418	None:intergenic
AACTTGATATTTCTGATACT+GGG	0.486848	6_1:-34381946	Msa0883390:CDS
AAGAGTTACCATCGAGGTAA+AGG	0.462997	6_1:+34382470	None:intergenic
AAGATCAAGGTACTGCAGTT+GGG	0.516370	6_1:+34373929	None:intergenic
AAGATCAAGGTACTGCAGTT+GGG	0.516370	6_1:+34383188	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTTAAGAGTTTGCAAAAC+GGG	+	chr6_1:34373464-34373483	None:intergenic	30.0%
TAGATAAAGCTCTTGCAATT+TGG	+	chr6_1:34373933-34373952	None:intergenic	30.0%
ACATATTTGAGGAAAGATCA+AGG	+	chr6_1:34374033-34374052	None:intergenic	30.0%
TGATGATCTCAACATATTTG+AGG	+	chr6_1:34374044-34374063	None:intergenic	30.0%
CACATGTTACTAAAGAAAGA+TGG	+	chr6_1:34374223-34374242	None:intergenic	30.0%
CTATCAAATAACAACTTGAG+TGG	-	chr6_1:34374262-34374281	Msa0883390:intron	30.0%
GGATAATGAGTTGTATGATA+AGG	+	chr6_1:34374497-34374516	None:intergenic	30.0%
CAGAAATATCAAGTTCCATT+AGG	+	chr6_1:34374627-34374646	None:intergenic	30.0%
GATATTTGAGGAAGCTTATA+TGG	+	chr6_1:34374757-34374776	None:intergenic	30.0%
AAAAATACAGCCGATATTTG+AGG	+	chr6_1:34374769-34374788	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	34373266	34383334	34373266	ID=Msa0883390;Name=Msa0883390
chr6_1	mRNA	34373266	34383334	34373266	ID=Msa0883390-mRNA-1;Parent=Msa0883390;Name=Msa0883390-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|0\|0\|1\|0.07\|0.07\|14\|0\|1124
chr6_1	exon	34383111	34383334	34383111	ID=Msa0883390-mRNA-1:exon:8352;Parent=Msa0883390-mRNA-1
chr6_1	exon	34382797	34383038	34382797	ID=Msa0883390-mRNA-1:exon:8351;Parent=Msa0883390-mRNA-1
chr6_1	exon	34382479	34382688	34382479	ID=Msa0883390-mRNA-1:exon:8350;Parent=Msa0883390-mRNA-1
chr6_1	exon	34382283	34382463	34382283	ID=Msa0883390-mRNA-1:exon:8349;Parent=Msa0883390-mRNA-1
chr6_1	exon	34382063	34382237	34382063	ID=Msa0883390-mRNA-1:exon:8348;Parent=Msa0883390-mRNA-1
chr6_1	exon	34381792	34382032	34381792	ID=Msa0883390-mRNA-1:exon:8347;Parent=Msa0883390-mRNA-1
chr6_1	exon	34381513	34381758	34381513	ID=Msa0883390-mRNA-1:exon:8346;Parent=Msa0883390-mRNA-1
chr6_1	exon	34381213	34381449	34381213	ID=Msa0883390-mRNA-1:exon:8345;Parent=Msa0883390-mRNA-1
chr6_1	exon	34381084	34381188	34381084	ID=Msa0883390-mRNA-1:exon:8344;Parent=Msa0883390-mRNA-1
chr6_1	exon	34380925	34381068	34380925	ID=Msa0883390-mRNA-1:exon:8343;Parent=Msa0883390-mRNA-1
chr6_1	exon	34380585	34380807	34380585	ID=Msa0883390-mRNA-1:exon:8342;Parent=Msa0883390-mRNA-1
chr6_1	exon	34380500	34380540	34380500	ID=Msa0883390-mRNA-1:exon:8341;Parent=Msa0883390-mRNA-1
chr6_1	exon	34374285	34374470	34374285	ID=Msa0883390-mRNA-1:exon:8340;Parent=Msa0883390-mRNA-1
chr6_1	exon	34373266	34374185	34373266	ID=Msa0883390-mRNA-1:exon:8339;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34383111	34383334	34383111	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34382797	34383038	34382797	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34382479	34382688	34382479	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34382283	34382463	34382283	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34382063	34382237	34382063	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34381792	34382032	34381792	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34381513	34381758	34381513	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34381213	34381449	34381213	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34381084	34381188	34381084	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34380925	34381068	34380925	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34380585	34380807	34380585	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34380500	34380540	34380500	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34374285	34374470	34374285	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1
chr6_1	CDS	34373266	34374185	34373266	ID=Msa0883390-mRNA-1:cds;Parent=Msa0883390-mRNA-1

Gene Sequence

>Msa0883390

ATGTCTTATGGTACGAATGGAGAAATCCCTTCTCAACTCGGGAATCTTACACGTTTACGATATCTCAATCTAAGAGATAACGAAAATATTGTTGGAGAAATCCCTTGTCAACTTAGAAATCTCTCCCAACTGCAGTACCTTGATCTTGAAGGAACTTCTCTTTCTGGAGAAATCCCTTTTCAACCAGGGAATCTTCCCGTTTTGCAAACTCTTAAACTTGAATTCGGACAATATCATAGTTTTGTCTCTTTTCACTACTTGCTGCAAACAATCATGAAGTTTATTCCGAACTTAAGAGAGTTGAGGTTAGTTGAATTTGGTCTTATAGATACTGATGTCGCGTCTTTGTTTCATTCTCATTCTAACTTTTCCAATTCTCTTACCATCCTTGATTTCTCTAATAATATGTTGACATCATCAACTTTTCAATTCTTGTCAAATATTAGTCTTAATCTTCAAGAGCTTCGTAGCCGCAGTTTTAGCGCCAAATTGCAAGAGCTTTATCTAACAAATTGCATGCTTACAGATAAAAGTTTTCTTGTGTCATCTACTTCAGTTGTGAACTCTTCATCTTCCCTTCTCATCCTTGATCTTTCCTCAAATATGTTGAGATCATCAGAAATATTTTTATGGGCTTTTAACTTTACCACTAGTCTTCATAGCCTTTACCTCGATGGTCCCATTCCTGATGGATTTGGTAAAGTGATGAACTCTCTTGAATATCTTTCACTCTCAGGAAACAATTTACAAGGAGATATTCCATCTTTCTTTAGTAACATGTGCACATTGCATACTTTAAACCTATCAAATAACAACTTGAGTGGTGAAATTTCTAGCTTCATCAAGAAAAATTCAGTCATAACTGGCACGCTACCTGAATGCATCAACTTGCTATCTGAGTTGGAGTATCTTAACTTGGAGGGTAATGCTTTGGATGGTGAAATCAATGAATTACATCTCACCAATTTTTCCAAATTGAAAGTATTATCCTTATCATACAACTCATTATCCCTTAAGTTTCCCCTTAGTTGGTTGGCATCTTGCAAGTTGGGTTCAAGCTTTCCAAGATGGCTCCAAACACAAAGATCCCTAATGGAACTTGATATTTCTGATACTGGGATTAATGATGGCGTACCCGAATGGTTTTGGAACAACTCGCAACATATGATATTAATGAATATGTCGCACAACAATCTAATCGGTACAATTCCAGATTTTCCATATAAGCTTCCTCAAATATCGGCTGTATTTTTGAATTCAAACCAATTTGAGGGTCTTATGCTCTCCGGAAATAAATTTTCACATTTGTTTTCATTTTTATGTGATAAAAAAGCACCAACAACAAACTTGGTCACTCTAGATATATCAAACAATCAAATCGAGGGACAACTTCCTAATTGTTGGAATTCTGTAAACACATTATTGTTTCTTGATTTGAGAAACAATAAACTTTCGGGGAAGATTCCACAGTCCATGGGCACCCTTGTTAAATTGGAAGCTTTGGTTTTAAGAAATAATAGTGAAAATTTGTTGTCTGGCTCAATTCCAACATGGATAGGAGAAAACATGCAACAATTGATAATCTTGAGCTTGAAAGGGAATCACTTTTTTGGAAATATTCCTATTCACCTATGTTATTTAAGGAATATTCAACTTTTGGATCTTTCAAGAAATAACTTATCAGAAGGAATTCCAACATGCTTAGAGAATTTTACATCATTGTCTGAAAAGAGCATCAATACTAGTGAAGCTGAAAGCTACTTTTTCGATGATTATACGTTTAACATACCTTTATTCTGGAAAGGTATGGAACGTGGGTTCAAGCATCCAGAGATGCGTCTTAAGGGCATTGATCTTTCAAGTGAAATACCAAAAAAGATTGGATATTTGGTTGGATTAGTCGCTTTGAATTTATCAAGAAACAATTTGAGCGGAGAAATCCCATCTGAAATTGGAAATTTAGTTTCACTTGATTTCCTCGACTTGTCAAGAAACCATTTCTTTGGTTTTGACGGAAATCTTGATCTTTGTGGTGAACCACTTGAAAACAAATGTCCCGAAGACGCGACAACAATAAATCCTCAAGGGTCAGAAATTCATGGTGAAGATGACAATTCTGTTTTCCATGAAGGATTTTACATGTGCTTGGGGATAGGCTATTTCACAGGTTTTTGGGGATTATTAGGGCCAATACTACTTTGGAGATCTTGGAGAATTGCGTATATAAGTCAATGTGACAAGGTTCCAAATGTGGCTCAAAGACTAGAAGAGAGGGAGAAACAAGCACTCCTCAAGTTCAAACAAAGCATCGTTGACGACTCTTACATGCTGTCTACATGGAAGGAGGATGACAAAGATGGAGACTGCTGCAAATGGAAAGGAATTGAGTGCAACAAAGAAACAGGTCATGTGAAGAAACTTGATCTTCATGGTGATCAAACACAATTCTTGGTAGGCTCACTAACGAAGTTAAAGTATCTCAATTTCTCAAGTTCTTTACTTGGTGGGAGGATTCCTTATCAAATTGGAAAACTTTCAGATCTTGAATATCTAGATCTAAGTGAGATGTTTTATGGTACAATCGGAAAAATCCCTTCTCAACTCGGGAATCTTACACGTTTACGATATCTCAATCTAAGCGATAGCGTAGATATTGTTGGAGAAATCCCATGTCAACTTAGAAATCTCTCCCAACTGCAGTACCTTGATCTTGAAGGAACTTCTCTTTCTGGAGCAATCCCTTTTCAACCAGGGAATCTTCCCGTTTTGCAAACTCTTAAACTTGATGTGTATTTTGATCTTACAAATGATAATATAAATTGGTTTTCTACACTCTCTTCTTTAACAAGTCTTTCTCTGAGAGGACAATTTCCTAGTTTTGTCTCTTCTCACTACTTGCTTCAAACAATCATGAAGTTTATTCCAAACTTAAGAGAGTTGAGGTTAGTTGATTTTGTTCTTATAGATACTGATGTTGCGTCTTTGTTTCATTCTCATTCTAACTTTTCCAAGTCTCTTACCATCCTTGATTTCTCTAACAATTTTTTGACATCATCAACTTTTCAATTCTTGTCAAATATTAGTCTTAATCTTCAAGAACTTCGTCTTTCTCAAAACAATATTGTTTTATCATCTCATTTCTATCCAAACTTTCCTTCTCTTGTCCTCCTTGACCTCTCGTATAATAATATTTCATCATCCCAATTTCCAGGTAGCCGCAGTTTTAGCTCCAAATTGCAAGAGCTTTATCTAACAAATTGCATGCTTACAGATAAAAGTTTTCTTGTGCCATCTACTTCAGTCTTGAACTCTTCATCTTCCCTTCTCATCCTTGATCTTTCCTCAAATATGTTGAGATCATCAGAAATATTTTAA

Protein sequence

>Msa0883390

MSYGTNGEIPSQLGNLTRLRYLNLRDNENIVGEIPCQLRNLSQLQYLDLEGTSLSGEIPFQPGNLPVLQTLKLEFGQYHSFVSFHYLLQTIMKFIPNLRELRLVEFGLIDTDVASLFHSHSNFSNSLTILDFSNNMLTSSTFQFLSNISLNLQELRSRSFSAKLQELYLTNCMLTDKSFLVSSTSVVNSSSSLLILDLSSNMLRSSEIFLWAFNFTTSLHSLYLDGPIPDGFGKVMNSLEYLSLSGNNLQGDIPSFFSNMCTLHTLNLSNNNLSGEISSFIKKNSVITGTLPECINLLSELEYLNLEGNALDGEINELHLTNFSKLKVLSLSYNSLSLKFPLSWLASCKLGSSFPRWLQTQRSLMELDISDTGINDGVPEWFWNNSQHMILMNMSHNNLIGTIPDFPYKLPQISAVFLNSNQFEGLMLSGNKFSHLFSFLCDKKAPTTNLVTLDISNNQIEGQLPNCWNSVNTLLFLDLRNNKLSGKIPQSMGTLVKLEALVLRNNSENLLSGSIPTWIGENMQQLIILSLKGNHFFGNIPIHLCYLRNIQLLDLSRNNLSEGIPTCLENFTSLSEKSINTSEAESYFFDDYTFNIPLFWKGMERGFKHPEMRLKGIDLSSEIPKKIGYLVGLVALNLSRNNLSGEIPSEIGNLVSLDFLDLSRNHFFGFDGNLDLCGEPLENKCPEDATTINPQGSEIHGEDDNSVFHEGFYMCLGIGYFTGFWGLLGPILLWRSWRIAYISQCDKVPNVAQRLEEREKQALLKFKQSIVDDSYMLSTWKEDDKDGDCCKWKGIECNKETGHVKKLDLHGDQTQFLVGSLTKLKYLNFSSSLLGGRIPYQIGKLSDLEYLDLSEMFYGTIGKIPSQLGNLTRLRYLNLSDSVDIVGEIPCQLRNLSQLQYLDLEGTSLSGAIPFQPGNLPVLQTLKLDVYFDLTNDNINWFSTLSSLTSLSLRGQFPSFVSSHYLLQTIMKFIPNLRELRLVDFVLIDTDVASLFHSHSNFSKSLTILDFSNNFLTSSTFQFLSNISLNLQELRLSQNNIVLSSHFYPNFPSLVLLDLSYNNISSSQFPGSRSFSSKLQELYLTNCMLTDKSFLVPSTSVLNSSSSLLILDLSSNMLRSSEIF*