AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1182770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1182770 MtrunA17_Chr8g0338461 97.917 96 2 0 1 96 1 96 2.57e-61 194
Msa1182770 MtrunA17_Chr7g0234041 72.826 92 25 0 5 96 1 92 3.41e-44 149
Msa1182770 MtrunA17_Chr7g0234051 74.157 89 23 0 8 96 7 95 1.95e-43 147
Msa1182770 MtrunA17_Chr7g0249431 52.747 91 41 1 8 96 5 95 1.31e-29 110
Msa1182770 MtrunA17_Chr4g0068861 41.111 90 47 1 8 91 56 145 1.03e-19 82.4
Msa1182770 MtrunA17_Chr4g0068841 41.758 91 46 1 5 88 6 96 1.29e-18 79.3
Msa1182770 MtrunA17_Chr3g0093971 42.045 88 48 1 9 96 8 92 1.69e-18 79.0
Msa1182770 MtrunA17_Chr1g0165811 42.708 96 52 3 3 96 2 96 4.58e-18 76.6
Msa1182770 MtrunA17_Chr8g0385871 47.561 82 42 1 8 89 11 91 1.90e-17 76.3
Msa1182770 MtrunA17_Chr2g0285351 42.857 98 52 2 1 95 1 97 2.67e-17 75.5
Msa1182770 MtrunA17_Chr3g0133011 40.206 97 49 2 8 95 26 122 3.79e-17 75.1
Msa1182770 MtrunA17_Chr4g0038311 43.529 85 47 1 4 88 8 91 5.38e-17 74.7
Msa1182770 MtrunA17_Chr2g0285381 49.254 67 34 0 29 95 35 101 5.64e-17 74.7
Msa1182770 MtrunA17_Chr4g0009641 45.833 72 38 1 31 101 40 111 6.03e-17 74.7
Msa1182770 MtrunA17_Chr5g0431301 47.368 76 39 1 16 91 15 89 7.97e-17 74.3
Msa1182770 MtrunA17_Chr2g0281621 42.045 88 44 2 7 88 6 92 1.13e-16 73.9
Msa1182770 MtrunA17_Chr3g0094811 68.889 45 14 0 44 88 43 87 1.13e-16 73.9
Msa1182770 MtrunA17_Chr1g0153881 55.556 63 28 0 27 89 86 148 1.18e-16 73.9
Msa1182770 MtrunA17_Chr4g0009681 50.000 66 32 1 31 95 37 102 1.46e-16 73.6
Msa1182770 MtrunA17_Chr4g0047861 54.098 61 27 1 28 88 51 110 1.55e-16 73.6
Msa1182770 MtrunA17_Chr2g0318911 40.000 85 50 1 5 88 15 99 1.66e-16 73.6
Msa1182770 MtrunA17_Chr2g0309521 53.571 56 25 1 34 88 43 98 1.83e-16 73.2
Msa1182770 MtrunA17_Chr2g0285371 47.761 67 35 0 29 95 32 98 2.44e-16 72.8
Msa1182770 MtrunA17_Chr3g0131731 44.828 87 43 3 7 89 4 89 2.48e-16 72.8
Msa1182770 MtrunA17_Chr4g0009701 48.485 66 33 1 31 95 40 105 2.52e-16 72.8
Msa1182770 MtrunA17_Chr3g0126051 48.485 66 33 1 26 91 29 93 3.08e-16 72.8
Msa1182770 MtrunA17_Chr1g0153941 44.000 75 42 0 15 89 62 136 3.28e-16 72.8
Msa1182770 MtrunA17_Chr2g0309511 53.571 56 25 1 34 88 43 98 3.99e-16 72.4
Msa1182770 MtrunA17_Chr2g0304931 46.667 75 39 1 23 96 30 104 4.37e-16 72.4
Msa1182770 MtrunA17_Chr4g0009721 42.391 92 47 2 5 95 15 101 5.75e-16 71.6
Msa1182770 MtrunA17_Chr4g0009711 39.080 87 52 1 10 95 19 105 7.22e-16 71.6
Msa1182770 MtrunA17_Chr3g0126031 44.444 81 44 1 11 91 9 88 8.01e-16 71.6
Msa1182770 MtrunA17_Chr4g0009651 48.485 66 33 1 31 95 40 105 8.20e-16 71.6
Msa1182770 MtrunA17_Chr1g0153931 42.667 75 43 0 15 89 60 134 1.09e-15 70.1
Msa1182770 MtrunA17_Chr2g0309541 38.824 85 48 2 8 88 13 97 3.51e-15 69.7
Msa1182770 MtrunA17_Chr4g0009661 45.455 66 35 1 31 95 40 105 1.13e-14 68.2
Msa1182770 MtrunA17_Chr3g0118891 54.237 59 27 0 31 89 78 136 2.31e-14 67.4
Msa1182770 MtrunA17_Chr3g0118831 42.391 92 48 1 3 89 45 136 2.65e-14 67.0
Msa1182770 MtrunA17_Chr3g0118881 41.304 92 49 1 3 89 45 136 3.26e-14 67.0
Msa1182770 MtrunA17_Chr1g0199991 41.892 74 41 1 17 88 19 92 5.02e-14 66.2
Msa1182770 MtrunA17_Chr3g0118841 52.542 59 28 0 31 89 79 137 1.04e-13 65.5
Msa1182770 MtrunA17_Chr2g0281631 51.852 54 25 1 30 83 45 97 1.06e-13 62.4
Msa1182770 MtrunA17_Chr7g0229631 55.556 54 22 2 44 96 46 98 1.61e-13 62.4
Msa1182770 MtrunA17_Chr3g0118861 52.542 59 28 0 31 89 76 134 1.63e-13 65.1
Msa1182770 MtrunA17_Chr3g0118851 50.847 59 29 0 31 89 78 136 2.34e-13 64.3
Msa1182770 MtrunA17_Chr1g0199971 40.449 89 47 3 6 88 4 92 3.88e-13 63.9
Msa1182770 MtrunA17_Chr7g0229611 55.556 54 22 2 44 96 38 90 5.84e-13 59.7
Msa1182770 MtrunA17_Chr4g0009671 46.667 60 31 1 37 95 11 70 1.07e-12 62.4
Msa1182770 MtrunA17_Chr1g0204191 55.556 54 23 1 44 96 104 157 1.23e-12 62.4
Msa1182770 MtrunA17_Chr1g0171411 50.000 52 26 0 45 96 83 134 2.94e-12 61.2
Msa1182770 MtrunA17_Chr7g0219051 39.506 81 41 2 15 88 13 92 3.06e-12 61.2
Msa1182770 MtrunA17_Chr7g0221551 44.068 59 32 1 31 89 31 88 6.22e-12 60.5
Msa1182770 MtrunA17_Chr3g0090331 44.444 63 34 1 27 89 71 132 6.28e-12 60.5
Msa1182770 MtrunA17_Chr4g0020241 42.857 63 35 1 27 89 70 131 2.02e-11 58.9
Msa1182770 MtrunA17_Chr1g0199171 50.000 52 25 1 45 96 90 140 3.16e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1182770 AT4G12910.2 59.794 97 34 1 5 96 4 100 1.53e-38 134
Msa1182770 AT4G12910.1 59.794 97 34 1 5 96 4 100 2.27e-38 134
Msa1182770 AT3G25420.1 60.417 96 37 1 1 96 1 95 4.12e-36 128
Msa1182770 AT3G12220.3 46.667 75 40 0 22 96 18 92 2.12e-19 81.6
Msa1182770 AT3G12220.1 46.667 75 40 0 22 96 18 92 2.27e-19 81.6
Msa1182770 AT3G10450.4 45.263 95 49 1 2 96 3 94 3.26e-18 78.6
Msa1182770 AT3G12240.1 44.444 72 40 0 25 96 22 93 3.50e-18 78.6
Msa1182770 AT3G10450.1 45.263 95 49 1 2 96 3 94 3.54e-18 78.6
Msa1182770 AT3G12230.1 42.667 75 43 0 22 96 18 92 8.06e-18 77.4
Msa1182770 AT5G42230.1 43.182 88 46 2 4 91 5 88 8.57e-18 77.4
Msa1182770 AT5G42230.2 43.182 88 46 2 4 91 5 88 8.57e-18 77.4
Msa1182770 AT3G56540.1 47.191 89 44 2 7 95 58 143 9.38e-18 75.9
Msa1182770 AT1G73290.2 44.928 69 38 0 28 96 29 97 1.39e-17 75.9
Msa1182770 AT5G23210.3 51.429 70 32 2 23 92 44 111 1.63e-17 76.6
Msa1182770 AT3G12203.1 40.000 85 51 0 12 96 11 95 1.98e-17 76.3
Msa1182770 AT5G23210.1 51.429 70 32 2 23 92 44 111 2.01e-17 76.3
Msa1182770 AT1G73280.2 37.895 95 59 0 2 96 4 98 2.70e-17 75.9
Msa1182770 AT5G36180.1 45.588 68 37 0 29 96 31 98 2.76e-17 75.9
Msa1182770 AT4G15100.1 56.250 64 27 1 25 88 39 101 2.93e-17 75.9
Msa1182770 AT1G11080.1 49.333 75 37 1 14 88 34 107 2.99e-17 75.9
Msa1182770 AT1G73280.1 37.895 95 59 0 2 96 4 98 3.01e-17 75.9
Msa1182770 AT1G11080.2 49.333 75 37 1 14 88 34 107 3.09e-17 75.9
Msa1182770 AT2G23000.1 45.588 68 37 0 29 96 23 90 3.17e-17 75.9
Msa1182770 AT2G23000.2 45.588 68 37 0 29 96 23 90 3.17e-17 75.9
Msa1182770 AT1G73290.3 44.928 69 38 0 28 96 29 97 3.58e-17 75.5
Msa1182770 AT1G73290.1 45.588 68 37 0 29 96 30 97 4.99e-17 75.1
Msa1182770 AT2G12480.4 45.205 73 39 1 19 91 20 91 5.04e-17 75.1
Msa1182770 AT2G12480.1 45.205 73 39 1 19 91 20 91 5.07e-17 75.1
Msa1182770 AT2G12480.2 45.205 73 39 1 19 91 20 91 5.18e-17 75.1
Msa1182770 AT1G73270.1 45.588 68 37 0 29 96 31 98 5.72e-17 75.1
Msa1182770 AT1G73270.2 45.588 68 37 0 29 96 31 98 5.98e-17 75.1
Msa1182770 AT1G73300.1 45.588 68 37 0 29 96 31 98 6.93e-17 74.7
Msa1182770 AT1G73300.2 45.588 68 37 0 29 96 31 98 6.93e-17 74.7
Msa1182770 AT2G22980.3 45.588 68 37 0 29 96 24 91 7.68e-17 74.3
Msa1182770 AT2G22920.4 45.588 68 37 0 29 96 23 90 7.83e-17 73.9
Msa1182770 AT2G22980.2 45.588 68 37 0 29 96 24 91 7.91e-17 74.7
Msa1182770 AT5G42240.1 53.030 66 30 1 26 91 28 92 7.91e-17 74.7
Msa1182770 AT2G22980.4 45.588 68 37 0 29 96 24 91 9.01e-17 74.3
Msa1182770 AT2G22980.1 45.588 68 37 0 29 96 24 91 9.89e-17 74.3
Msa1182770 AT2G12480.3 40.000 90 52 2 2 91 4 91 1.16e-16 74.3
Msa1182770 AT2G22920.1 45.588 68 37 0 29 96 23 90 1.35e-16 73.9
Msa1182770 AT1G43780.1 50.000 66 32 1 26 91 33 97 1.45e-16 73.9
Msa1182770 AT2G22920.2 45.588 68 37 0 29 96 23 90 1.46e-16 73.9
Msa1182770 AT1G73310.2 45.588 68 37 0 29 96 31 98 1.76e-16 73.6
Msa1182770 AT1G73310.1 45.588 68 37 0 29 96 31 98 2.31e-16 73.6
Msa1182770 AT2G22990.3 44.118 68 38 0 29 96 21 88 2.40e-16 73.2
Msa1182770 AT3G52020.1 50.725 69 33 1 27 95 76 143 2.67e-16 73.2
Msa1182770 AT1G61130.1 44.828 87 45 2 4 88 3 88 2.74e-16 73.2
Msa1182770 AT3G12203.3 47.619 63 33 0 34 96 12 74 2.82e-16 73.2
Msa1182770 AT2G22990.1 43.478 69 39 0 28 96 20 88 2.89e-16 73.2
Msa1182770 AT2G22990.4 43.478 69 39 0 28 96 20 88 3.02e-16 73.2
Msa1182770 AT2G22970.2 44.118 68 38 0 29 96 23 90 3.13e-16 72.4
Msa1182770 AT2G22990.5 43.478 69 39 0 28 96 20 88 3.25e-16 72.8
Msa1182770 AT5G09640.1 38.298 94 55 1 3 96 2 92 3.30e-16 72.8
Msa1182770 AT2G22970.4 44.118 68 38 0 29 96 23 90 3.81e-16 72.8
Msa1182770 AT2G22970.3 44.118 68 38 0 29 96 23 90 4.09e-16 72.8
Msa1182770 AT1G28110.1 55.932 59 25 1 31 89 32 89 4.41e-16 72.8
Msa1182770 AT1G28110.2 55.932 59 25 1 31 89 32 89 4.41e-16 72.8
Msa1182770 AT2G23010.2 34.444 90 56 1 10 96 1 90 4.52e-16 72.4
Msa1182770 AT2G22970.1 44.118 68 38 0 29 96 23 90 4.72e-16 72.4
Msa1182770 AT2G23010.1 34.444 90 56 1 10 96 1 90 4.75e-16 72.4
Msa1182770 AT4G30810.1 38.947 95 51 1 1 88 1 95 4.87e-16 72.4
Msa1182770 AT2G33530.1 52.542 59 27 1 31 89 34 91 1.56e-15 70.9
Msa1182770 AT3G52000.1 44.444 72 40 0 24 95 57 128 1.07e-14 68.6
Msa1182770 AT3G63470.1 48.333 60 30 1 30 89 81 139 8.47e-14 66.2
Msa1182770 AT1G33540.1 37.313 67 42 0 29 95 27 93 9.68e-14 65.9
Msa1182770 AT2G24010.1 43.939 66 36 1 23 88 23 87 1.14e-13 65.9
Msa1182770 AT2G24000.2 60.000 45 17 1 45 88 44 88 1.26e-13 65.5
Msa1182770 AT2G24000.1 60.000 45 17 1 45 88 44 88 1.27e-13 65.5
Msa1182770 AT3G12220.2 54.167 48 22 0 49 96 15 62 1.52e-13 65.5
Msa1182770 AT2G05850.1 46.970 66 35 0 23 88 56 121 1.53e-13 65.5
Msa1182770 AT3G52010.1 41.096 73 43 0 23 95 57 129 2.06e-13 65.1
Msa1182770 AT3G07990.1 50.000 60 28 1 31 88 34 93 2.08e-13 65.1
Msa1182770 AT2G35770.1 37.778 90 52 2 3 88 6 95 4.87e-13 63.9
Msa1182770 AT3G02110.1 45.161 62 33 1 27 88 34 94 4.88e-13 63.9
Msa1182770 AT2G35780.1 46.875 64 32 1 27 88 26 89 4.99e-13 63.9
Msa1182770 AT4G30610.1 57.778 45 18 1 45 88 46 90 6.91e-13 63.5
Msa1182770 AT3G10450.3 52.083 48 23 0 49 96 4 51 3.72e-12 61.2
Msa1182770 AT3G10450.2 52.083 48 23 0 49 96 4 51 4.86e-12 61.2
Msa1182770 AT5G22980.1 50.000 52 25 1 45 96 98 148 4.89e-12 61.2
Msa1182770 AT5G08260.1 49.206 63 30 2 27 88 36 97 6.51e-12 60.8
Msa1182770 AT3G17180.2 41.791 67 38 1 23 88 31 97 5.96e-11 58.2
Msa1182770 AT3G17180.1 53.333 45 20 1 45 88 53 97 7.05e-11 57.8

Find 32 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGTGGTTCTTTGGCTTAA+TGG 0.092309 8_1:-17935153 Msa1182770:CDS
CTGTGGATCCAGTGGTTCTT+TGG 0.150186 8_1:-17935161 Msa1182770:CDS
TTCTAATTCATTTCCTGTTT+TGG 0.166485 8_1:-17935556 Msa1182770:five_prime_UTR
CCTGGGTGTTCTAGCTTTGA+TGG 0.249536 8_1:-17935126 Msa1182770:CDS
TGTGTTACAATGGCAGTTTC+AGG 0.274630 8_1:+17935447 None:intergenic
CTTTGGCTTAATGGTGGACC+TGG 0.299794 8_1:-17935144 Msa1182770:CDS
ATCCTTGTTTGTTCCAAAAC+AGG 0.326829 8_1:+17935543 None:intergenic
GCCATTGTAACACAGGTTCC+TGG 0.383707 8_1:-17935438 Msa1182770:CDS
AACAGTTAGCACTGTCTGTT+TGG 0.392419 8_1:-17935514 Msa1182770:CDS
GCCTGTGCCCATCAACCATT+TGG 0.399302 8_1:-17935006 Msa1182770:CDS
ACACAGGTTCCTGGTTTCAA+TGG 0.407201 8_1:-17935429 Msa1182770:CDS
CTCTTAACCAAATGGTTGAT+GGG 0.482135 8_1:+17934999 None:intergenic
ATACCTTCCAAGCATTATGC+TGG 0.498988 8_1:-17935402 Msa1182770:CDS
GTGGTTCTTTGGCTTAATGG+TGG 0.518546 8_1:-17935150 Msa1182770:CDS
ACCAAATGGTTGATGGGCAC+AGG 0.522139 8_1:+17935005 None:intergenic
TTTGGCTTAATGGTGGACCT+GGG 0.539326 8_1:-17935143 Msa1182770:CDS
CCATTAAGCCAAAGAACCAC+TGG 0.546695 8_1:+17935153 None:intergenic
TACATACCCAGCATAATGCT+TGG 0.554604 8_1:+17935395 None:intergenic
GATGGATTCATATATGAGCA+TGG 0.581015 8_1:-17935108 Msa1182770:intron
TACCCAGCATAATGCTTGGA+AGG 0.583407 8_1:+17935399 None:intergenic
TACCTTCCAAGCATTATGCT+GGG 0.592619 8_1:-17935401 Msa1182770:intron
ACCAGGAACCTGTGTTACAA+TGG 0.604228 8_1:+17935437 None:intergenic
GGTATTGTTCCATTGAAACC+AGG 0.615169 8_1:+17935420 None:intergenic
AGAACCACTGGATCCACAGA+AGG 0.624323 8_1:+17935165 None:intergenic
TGAAACTGCCATTGTAACAC+AGG 0.626685 8_1:-17935445 Msa1182770:CDS
GTGACTGTGGATGAAAGTCA+TGG 0.631732 8_1:-17935228 Msa1182770:CDS
TAAGCCTTCTGTGGATCCAG+TGG 0.638061 8_1:-17935169 Msa1182770:CDS
GTCAGAAGGTAAGCCTTCTG+TGG 0.640057 8_1:-17935178 Msa1182770:CDS
CTGTGGATGAAAGTCATGGA+AGG 0.666630 8_1:-17935224 Msa1182770:CDS
AAATTGTCAGCACAATGCTG+AGG 0.690969 8_1:+17935475 None:intergenic
TGAATGAAGGTATGTGACTG+TGG 0.691665 8_1:-17935241 Msa1182770:intron
CCATCAAAGCTAGAACACCC+AGG 0.718686 8_1:+17935126 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTCTTATAATAAATTT+TGG - chr8_1:17935250-17935269 Msa1182770:intron 10.0%
!!! GATTTCTTATAATAAATTTT+GGG - chr8_1:17935251-17935270 Msa1182770:intron 10.0%
!! TTCTAATTCATTTCCTGTTT+TGG - chr8_1:17935030-17935049 Msa1182770:intron 25.0%
ATTAATTGACCCTTGAATGA+AGG - chr8_1:17935332-17935351 Msa1182770:intron 30.0%
! TACTATTTTGTTGAGTCAGA+AGG - chr8_1:17935394-17935413 Msa1182770:intron 30.0%
!!! TTCCTGTTTTGGAACAAACA+AGG - chr8_1:17935041-17935060 Msa1182770:intron 35.0%
! ATCCTTGTTTGTTCCAAAAC+AGG + chr8_1:17935046-17935065 None:intergenic 35.0%
AGTCACATACCTTCATTCAA+GGG + chr8_1:17935344-17935363 None:intergenic 35.0%
! GATGGATTCATATATGAGCA+TGG - chr8_1:17935478-17935497 Msa1182770:CDS 35.0%
AACAGTTAGCACTGTCTGTT+TGG - chr8_1:17935072-17935091 Msa1182770:intron 40.0%
AAATTGTCAGCACAATGCTG+AGG + chr8_1:17935114-17935133 None:intergenic 40.0%
TGTGTTACAATGGCAGTTTC+AGG + chr8_1:17935142-17935161 None:intergenic 40.0%
TGAAACTGCCATTGTAACAC+AGG - chr8_1:17935141-17935160 Msa1182770:CDS 40.0%
GGTATTGTTCCATTGAAACC+AGG + chr8_1:17935169-17935188 None:intergenic 40.0%
ATACCTTCCAAGCATTATGC+TGG - chr8_1:17935184-17935203 Msa1182770:CDS 40.0%
TACCTTCCAAGCATTATGCT+GGG - chr8_1:17935185-17935204 Msa1182770:CDS 40.0%
TACATACCCAGCATAATGCT+TGG + chr8_1:17935194-17935213 None:intergenic 40.0%
CAGTCACATACCTTCATTCA+AGG + chr8_1:17935345-17935364 None:intergenic 40.0%
! TGAATGAAGGTATGTGACTG+TGG - chr8_1:17935345-17935364 Msa1182770:intron 40.0%
TACTACATGTGTCACAGACA+GGG + chr8_1:17935557-17935576 None:intergenic 40.0%
ACCAGGAACCTGTGTTACAA+TGG + chr8_1:17935152-17935171 None:intergenic 45.0%
ACACAGGTTCCTGGTTTCAA+TGG - chr8_1:17935157-17935176 Msa1182770:CDS 45.0%
TACCCAGCATAATGCTTGGA+AGG + chr8_1:17935190-17935209 None:intergenic 45.0%
GTGACTGTGGATGAAAGTCA+TGG - chr8_1:17935358-17935377 Msa1182770:intron 45.0%
CTGTGGATGAAAGTCATGGA+AGG - chr8_1:17935362-17935381 Msa1182770:intron 45.0%
CCATTAAGCCAAAGAACCAC+TGG + chr8_1:17935436-17935455 None:intergenic 45.0%
! CCAGTGGTTCTTTGGCTTAA+TGG - chr8_1:17935433-17935452 Msa1182770:CDS 45.0%
! GTGGTTCTTTGGCTTAATGG+TGG - chr8_1:17935436-17935455 Msa1182770:CDS 45.0%
!! TTTGGCTTAATGGTGGACCT+GGG - chr8_1:17935443-17935462 Msa1182770:CDS 45.0%
CTACTACATGTGTCACAGAC+AGG + chr8_1:17935558-17935577 None:intergenic 45.0%
GCCATTGTAACACAGGTTCC+TGG - chr8_1:17935148-17935167 Msa1182770:CDS 50.0%
GTCAGAAGGTAAGCCTTCTG+TGG - chr8_1:17935408-17935427 Msa1182770:CDS 50.0%
TAAGCCTTCTGTGGATCCAG+TGG - chr8_1:17935417-17935436 Msa1182770:CDS 50.0%
AGAACCACTGGATCCACAGA+AGG + chr8_1:17935424-17935443 None:intergenic 50.0%
CTGTGGATCCAGTGGTTCTT+TGG - chr8_1:17935425-17935444 Msa1182770:CDS 50.0%
!! CTTTGGCTTAATGGTGGACC+TGG - chr8_1:17935442-17935461 Msa1182770:CDS 50.0%
CCATCAAAGCTAGAACACCC+AGG + chr8_1:17935463-17935482 None:intergenic 50.0%
!! CCTGGGTGTTCTAGCTTTGA+TGG - chr8_1:17935460-17935479 Msa1182770:CDS 50.0%
!! ACCAAATGGTTGATGGGCAC+AGG + chr8_1:17935584-17935603 None:intergenic 50.0%
GCCTGTGCCCATCAACCATT+TGG - chr8_1:17935580-17935599 Msa1182770:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 17935002 17935606 17935002 ID=Msa1182770;Name=Msa1182770
chr8_1 mRNA 17935002 17935606 17935002 ID=Msa1182770-mRNA-1;Parent=Msa1182770;Name=Msa1182770-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62|0.5|0.66|0.66|1|1|3|0|106
chr8_1 exon 17935002 17935033 17935002 ID=Msa1182770-mRNA-1:exon:6785;Parent=Msa1182770-mRNA-1
chr8_1 exon 17935109 17935254 17935109 ID=Msa1182770-mRNA-1:exon:6784;Parent=Msa1182770-mRNA-1
chr8_1 exon 17935402 17935606 17935402 ID=Msa1182770-mRNA-1:exon:6783;Parent=Msa1182770-mRNA-1
chr8_1 five_prime_UTR 17935545 17935606 17935545 ID=Msa1182770-mRNA-1:five_prime_utr;Parent=Msa1182770-mRNA-1
chr8_1 CDS 17935402 17935544 17935402 ID=Msa1182770-mRNA-1:cds;Parent=Msa1182770-mRNA-1
chr8_1 CDS 17935109 17935254 17935109 ID=Msa1182770-mRNA-1:cds;Parent=Msa1182770-mRNA-1
chr8_1 CDS 17935002 17935033 17935002 ID=Msa1182770-mRNA-1:cds;Parent=Msa1182770-mRNA-1
Gene Sequence

>Msa1182770

ATGAACAAAACAGTTAGCACTGTCTGTTTGGTCTTACTTCACATTTACCTCAGCATTGTGCTGACAATTTCAGCACCTGAAACTGCCATTGTAACACAGGTTCCTGGTTTCAATGGAACAATACCTTCCAAGCATTATGCTGGGTATGTGACTGTGGATGAAAGTCATGGAAGGAATTTGTATTACTATTTTGTTGAGTCAGAAGGTAAGCCTTCTGTGGATCCAGTGGTTCTTTGGCTTAATGGTGGACCTGGGTGTTCTAGCTTTGATGGATTCATATATGAGCATGTAGATGCCTGTGCCCATCAACCATTTGGTTAA
Protein sequence

>Msa1182770

MNKTVSTVCLVLLHIYLSIVLTISAPETAIVTQVPGFNGTIPSKHYAGYVTVDESHGRNLYYYFVESEGKPSVDPVVLWLNGGPGCSSFDGFIYEHVDACAHQPFG*