AlfalfaGEDB | Msa1182770

M. sativa cultivar zhongmu-4 / Msa1182770

KEGG: K16296
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0008150 GO:0008152 GO:0016740 GO:0016746 GO:0016747 GO:0019748 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF00450.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1182770	XP_003626861.1	97.917	96	2	0	1	96	1	96	2.79e-57	194

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1182770	sp\|Q8L7B2\|SCP20_ARATH	59.794	97	34	1	5	96	4	100	2.23e-37	134

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1182770	G7LEB3	97.917	96	2	0	1	96	1	96	1.33e-57	194

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003220	Msa1182770	0.805217	1.484932e-49	-8.615850e-47
Msa0003700	Msa1182770	0.805469	1.314802e-49	-8.615850e-47
Msa0007970	Msa1182770	0.853426	2.409353e-61	-8.615850e-47
Msa0022750	Msa1182770	-0.813007	3.182454e-51	-8.615850e-47
Msa0030180	Msa1182770	0.821848	3.245090e-53	-8.615850e-47
Msa0030280	Msa1182770	0.808152	3.564183e-50	-8.615850e-47
Msa0032320	Msa1182770	0.809900	1.505124e-50	-8.615850e-47
Msa0032370	Msa1182770	0.826465	2.673572e-54	-8.615850e-47
Msa0035120	Msa1182770	0.803964	2.711751e-49	-8.615850e-47
Msa0036130	Msa1182770	0.804193	2.429578e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1182770	MtrunA17_Chr8g0338461	97.917	96	2	0	1	96	1	96	2.57e-61	194
Msa1182770	MtrunA17_Chr7g0234041	72.826	92	25	0	5	96	1	92	3.41e-44	149
Msa1182770	MtrunA17_Chr7g0234051	74.157	89	23	0	8	96	7	95	1.95e-43	147
Msa1182770	MtrunA17_Chr7g0249431	52.747	91	41	1	8	96	5	95	1.31e-29	110
Msa1182770	MtrunA17_Chr4g0068861	41.111	90	47	1	8	91	56	145	1.03e-19	82.4
Msa1182770	MtrunA17_Chr4g0068841	41.758	91	46	1	5	88	6	96	1.29e-18	79.3
Msa1182770	MtrunA17_Chr3g0093971	42.045	88	48	1	9	96	8	92	1.69e-18	79.0
Msa1182770	MtrunA17_Chr1g0165811	42.708	96	52	3	3	96	2	96	4.58e-18	76.6
Msa1182770	MtrunA17_Chr8g0385871	47.561	82	42	1	8	89	11	91	1.90e-17	76.3
Msa1182770	MtrunA17_Chr2g0285351	42.857	98	52	2	1	95	1	97	2.67e-17	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1182770	AT4G12910.2	59.794	97	34	1	5	96	4	100	1.53e-38	134
Msa1182770	AT4G12910.1	59.794	97	34	1	5	96	4	100	2.27e-38	134
Msa1182770	AT3G25420.1	60.417	96	37	1	1	96	1	95	4.12e-36	128
Msa1182770	AT3G12220.3	46.667	75	40	0	22	96	18	92	2.12e-19	81.6
Msa1182770	AT3G12220.1	46.667	75	40	0	22	96	18	92	2.27e-19	81.6
Msa1182770	AT3G10450.4	45.263	95	49	1	2	96	3	94	3.26e-18	78.6
Msa1182770	AT3G12240.1	44.444	72	40	0	25	96	22	93	3.50e-18	78.6
Msa1182770	AT3G10450.1	45.263	95	49	1	2	96	3	94	3.54e-18	78.6
Msa1182770	AT3G12230.1	42.667	75	43	0	22	96	18	92	8.06e-18	77.4
Msa1182770	AT5G42230.1	43.182	88	46	2	4	91	5	88	8.57e-18	77.4

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Find 32 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGTCAGCACAATGCTG+AGG	0.690969	8_1:+17935475	None:intergenic
AACAGTTAGCACTGTCTGTT+TGG	0.392419	8_1:-17935514	Msa1182770:CDS
ACACAGGTTCCTGGTTTCAA+TGG	0.407201	8_1:-17935429	Msa1182770:CDS
ACCAAATGGTTGATGGGCAC+AGG	0.522139	8_1:+17935005	None:intergenic
ACCAGGAACCTGTGTTACAA+TGG	0.604228	8_1:+17935437	None:intergenic
AGAACCACTGGATCCACAGA+AGG	0.624323	8_1:+17935165	None:intergenic
ATACCTTCCAAGCATTATGC+TGG	0.498988	8_1:-17935402	Msa1182770:CDS
ATCCTTGTTTGTTCCAAAAC+AGG	0.326829	8_1:+17935543	None:intergenic
CCAGTGGTTCTTTGGCTTAA+TGG	0.092309	8_1:-17935153	Msa1182770:CDS
CCATCAAAGCTAGAACACCC+AGG	0.718686	8_1:+17935126	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAATTGACCCTTGAATGA+AGG	-	chr8_1:17935332-17935351	Msa1182770:intron	30.0%
AGTCACATACCTTCATTCAA+GGG	+	chr8_1:17935344-17935363	None:intergenic	35.0%
AACAGTTAGCACTGTCTGTT+TGG	-	chr8_1:17935072-17935091	Msa1182770:intron	40.0%
AAATTGTCAGCACAATGCTG+AGG	+	chr8_1:17935114-17935133	None:intergenic	40.0%
TGTGTTACAATGGCAGTTTC+AGG	+	chr8_1:17935142-17935161	None:intergenic	40.0%
TGAAACTGCCATTGTAACAC+AGG	-	chr8_1:17935141-17935160	Msa1182770:CDS	40.0%
GGTATTGTTCCATTGAAACC+AGG	+	chr8_1:17935169-17935188	None:intergenic	40.0%
ATACCTTCCAAGCATTATGC+TGG	-	chr8_1:17935184-17935203	Msa1182770:CDS	40.0%
TACCTTCCAAGCATTATGCT+GGG	-	chr8_1:17935185-17935204	Msa1182770:CDS	40.0%
TACATACCCAGCATAATGCT+TGG	+	chr8_1:17935194-17935213	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	17935002	17935606	17935002	ID=Msa1182770;Name=Msa1182770
chr8_1	mRNA	17935002	17935606	17935002	ID=Msa1182770-mRNA-1;Parent=Msa1182770;Name=Msa1182770-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62\|0.5\|0.66\|0.66\|1\|1\|3\|0\|106
chr8_1	exon	17935002	17935033	17935002	ID=Msa1182770-mRNA-1:exon:6785;Parent=Msa1182770-mRNA-1
chr8_1	exon	17935109	17935254	17935109	ID=Msa1182770-mRNA-1:exon:6784;Parent=Msa1182770-mRNA-1
chr8_1	exon	17935402	17935606	17935402	ID=Msa1182770-mRNA-1:exon:6783;Parent=Msa1182770-mRNA-1
chr8_1	five_prime_UTR	17935545	17935606	17935545	ID=Msa1182770-mRNA-1:five_prime_utr;Parent=Msa1182770-mRNA-1
chr8_1	CDS	17935402	17935544	17935402	ID=Msa1182770-mRNA-1:cds;Parent=Msa1182770-mRNA-1
chr8_1	CDS	17935109	17935254	17935109	ID=Msa1182770-mRNA-1:cds;Parent=Msa1182770-mRNA-1
chr8_1	CDS	17935002	17935033	17935002	ID=Msa1182770-mRNA-1:cds;Parent=Msa1182770-mRNA-1

Gene Sequence	>Msa1182770 ATGAACAAAACAGTTAGCACTGTCTGTTTGGTCTTACTTCACATTTACCTCAGCATTGTGCTGACAATTTCAGCACCTGAAACTGCCATTGTAACACAGGTTCCTGGTTTCAATGGAACAATACCTTCCAAGCATTATGCTGGGTATGTGACTGTGGATGAAAGTCATGGAAGGAATTTGTATTACTATTTTGTTGAGTCAGAAGGTAAGCCTTCTGTGGATCCAGTGGTTCTTTGGCTTAATGGTGGACCTGGGTGTTCTAGCTTTGATGGATTCATATATGAGCATGTAGATGCCTGTGCCCATCAACCATTTGGTTAA
Protein sequence	>Msa1182770 MNKTVSTVCLVLLHIYLSIVLTISAPETAIVTQVPGFNGTIPSKHYAGYVTVDESHGRNLYYYFVESEGKPSVDPVVLWLNGGPGCSSFDGFIYEHVDACAHQPFG*