AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1037920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1037920 MtrunA17_Chr7g0275011 98.652 371 5 0 1 371 1 371 0.0 745
Msa1037920 MtrunA17_Chr1g0189931 69.210 367 111 1 1 367 1 365 0.0 548
Msa1037920 MtrunA17_Chr7g0274991 72.346 358 96 1 15 369 11 368 0.0 546
Msa1037920 MtrunA17_Chr7g0275021 70.308 357 106 0 12 368 12 368 0.0 543
Msa1037920 MtrunA17_Chr6g0457921 72.829 357 94 2 15 368 8 364 0.0 543
Msa1037920 MtrunA17_Chr7g0275001 71.989 357 97 2 14 369 7 361 0.0 542
Msa1037920 MtrunA17_Chr4g0008851 69.672 366 104 2 6 369 9 369 0.0 529
Msa1037920 MtrunA17_Chr1g0189901 67.297 370 114 2 1 368 1 365 0.0 521
Msa1037920 MtrunA17_Chr7g0215961 67.967 359 101 2 11 368 9 354 0.0 512
Msa1037920 MtrunA17_Chr1g0189891 65.363 358 117 3 13 369 8 359 1.78e-175 492
Msa1037920 MtrunA17_Chr1g0182811 63.687 358 128 2 14 369 13 370 5.21e-175 491
Msa1037920 MtrunA17_Chr8g0374101 37.333 375 222 8 4 366 3 376 1.28e-79 248
Msa1037920 MtrunA17_Chr5g0434621 37.982 337 203 5 14 349 7 338 2.32e-77 242
Msa1037920 MtrunA17_Chr8g0380041 39.335 361 209 7 12 366 7 363 1.41e-76 240
Msa1037920 MtrunA17_Chr3g0077571 35.635 362 228 5 5 366 1 357 3.79e-76 239
Msa1037920 MtrunA17_Chr5g0438621 36.937 333 197 7 14 340 11 336 3.73e-75 236
Msa1037920 MtrunA17_Chr4g0068441 39.697 330 194 4 34 360 35 362 5.34e-75 236
Msa1037920 MtrunA17_Chr3g0131321 38.507 335 193 5 34 360 34 363 7.12e-75 237
Msa1037920 MtrunA17_Chr2g0294311 37.228 368 212 8 12 364 8 371 1.34e-73 233
Msa1037920 MtrunA17_Chr3g0086641 38.504 361 209 8 9 361 10 365 4.65e-73 231
Msa1037920 MtrunA17_Chr3g0105401 34.783 345 220 5 7 348 1 343 1.41e-71 227
Msa1037920 MtrunA17_Chr2g0294301 36.620 355 220 4 13 364 14 366 2.22e-71 227
Msa1037920 MtrunA17_Chr4g0017431 34.174 357 228 4 16 366 8 363 7.08e-71 226
Msa1037920 MtrunA17_Chr2g0285061 35.775 355 223 5 15 366 13 365 2.16e-69 222
Msa1037920 MtrunA17_Chr3g0092131 35.207 338 212 5 14 349 6 338 4.35e-69 221
Msa1037920 MtrunA17_Chr3g0120861 36.646 322 192 7 34 349 38 353 5.95e-69 221
Msa1037920 MtrunA17_Chr5g0438631 36.283 339 205 6 13 343 3 338 7.51e-69 220
Msa1037920 MtrunA17_Chr3g0099161 34.218 377 226 9 1 366 61 426 5.07e-68 220
Msa1037920 MtrunA17_Chr5g0432101 34.513 339 214 5 12 345 11 346 2.92e-67 216
Msa1037920 MtrunA17_Chr5g0438641 34.111 343 211 7 12 348 13 346 3.27e-67 216
Msa1037920 MtrunA17_Chr8g0371491 37.695 321 188 6 34 348 36 350 4.80e-67 216
Msa1037920 MtrunA17_Chr5g0444401 34.706 340 208 5 34 365 28 361 2.57e-66 214
Msa1037920 MtrunA17_Chr7g0228261 97.938 97 2 0 275 371 1 97 2.63e-66 204
Msa1037920 MtrunA17_Chr4g0060811 36.709 316 196 4 36 349 29 342 1.27e-65 212
Msa1037920 MtrunA17_Chr1g0156891 36.313 358 211 8 9 355 14 365 5.25e-65 211
Msa1037920 MtrunA17_Chr3g0085881 38.138 333 190 8 34 364 33 351 1.53e-64 209
Msa1037920 MtrunA17_Chr3g0077581 37.278 338 204 6 34 366 36 370 1.95e-64 209
Msa1037920 MtrunA17_Chr5g0396511 34.441 331 214 3 36 364 48 377 1.49e-63 207
Msa1037920 MtrunA17_Chr2g0330781 36.728 324 191 7 34 347 31 350 2.42e-63 206
Msa1037920 MtrunA17_Chr1g0189911 60.959 146 56 1 223 367 2 147 3.91e-63 198
Msa1037920 MtrunA17_Chr8g0341001 34.294 347 215 8 12 348 4 347 4.33e-63 205
Msa1037920 MtrunA17_Chr1g0156921 33.618 351 209 7 14 348 14 356 6.85e-63 205
Msa1037920 MtrunA17_Chr3g0099151 33.600 375 231 9 1 366 57 422 9.85e-63 206
Msa1037920 MtrunA17_Chr1g0156931 34.483 348 208 7 15 349 14 354 1.50e-62 204
Msa1037920 MtrunA17_Chr2g0284951 36.527 334 196 8 34 364 33 353 5.65e-62 203
Msa1037920 MtrunA17_Chr2g0320671 34.985 343 217 5 9 348 5 344 7.56e-62 202
Msa1037920 MtrunA17_Chr1g0156901 37.812 320 188 5 34 348 50 363 1.26e-61 202
Msa1037920 MtrunA17_Chr3g0099231 33.529 340 213 5 34 366 28 361 1.88e-61 202
Msa1037920 MtrunA17_Chr1g0156911 34.831 356 209 7 15 356 9 355 9.43e-61 199
Msa1037920 MtrunA17_Chr5g0405831 35.913 323 194 7 34 349 43 359 1.13e-60 199
Msa1037920 MtrunA17_Chr2g0301641 33.811 349 215 6 30 369 39 380 3.29e-60 199
Msa1037920 MtrunA17_Chr4g0046151 34.513 339 201 9 17 339 15 348 1.64e-59 196
Msa1037920 MtrunA17_Chr8g0371481 34.862 327 200 7 34 353 41 361 2.57e-59 196
Msa1037920 MtrunA17_Chr2g0283191 32.194 351 215 8 6 339 8 352 7.06e-59 195
Msa1037920 MtrunA17_Chr8g0371471 34.251 327 201 8 34 353 41 360 2.43e-58 193
Msa1037920 MtrunA17_Chr3g0142941 33.851 322 198 6 34 348 47 360 3.40e-58 193
Msa1037920 MtrunA17_Chr5g0405821 35.000 320 200 7 34 348 43 359 3.18e-57 190
Msa1037920 MtrunA17_Chr2g0285001 34.783 345 191 9 35 364 34 359 2.87e-56 188
Msa1037920 MtrunA17_Chr2g0284991 30.471 361 232 8 11 363 8 357 3.59e-56 188
Msa1037920 MtrunA17_Chr8g0380031 33.134 335 210 6 34 366 84 406 3.56e-55 186
Msa1037920 MtrunA17_Chr3g0142921 34.769 325 200 6 30 348 32 350 7.70e-55 184
Msa1037920 MtrunA17_Chr8g0370951 33.521 355 205 11 28 364 25 366 1.05e-54 184
Msa1037920 MtrunA17_Chr1g0157001 33.628 339 204 6 39 363 41 372 1.05e-53 181
Msa1037920 MtrunA17_Chr8g0349341 32.845 341 205 8 34 364 37 363 2.98e-53 180
Msa1037920 MtrunA17_Chr2g0284921 31.138 334 217 6 34 363 34 358 2.72e-52 177
Msa1037920 MtrunA17_Chr8g0344931 30.541 370 230 9 10 366 6 361 5.83e-52 176
Msa1037920 MtrunA17_Chr8g0370981 29.187 418 235 10 2 365 8 418 1.31e-51 177
Msa1037920 MtrunA17_Chr4g0027521 32.508 323 207 6 34 349 27 345 1.32e-51 175
Msa1037920 MtrunA17_Chr8g0349321 33.918 342 200 8 34 364 37 363 1.81e-51 175
Msa1037920 MtrunA17_Chr5g0437421 31.193 327 212 5 34 351 32 354 4.22e-50 172
Msa1037920 MtrunA17_Chr1g0189921 69.565 115 35 0 14 128 11 125 2.67e-49 163
Msa1037920 MtrunA17_Chr2g0284941 31.250 368 197 10 14 364 9 337 7.81e-49 168
Msa1037920 MtrunA17_Chr8g0344941 30.086 349 223 8 14 351 21 359 7.93e-48 166
Msa1037920 MtrunA17_Chr3g0085231 26.446 363 248 7 5 364 2 348 1.72e-45 159
Msa1037920 MtrunA17_Chr5g0420811 30.149 335 213 10 14 342 11 330 1.81e-45 159
Msa1037920 MtrunA17_Chr8g0349301 34.386 285 169 8 34 314 37 307 3.81e-42 149
Msa1037920 MtrunA17_Chr8g0349331 30.702 342 185 8 32 364 33 331 2.46e-41 148
Msa1037920 MtrunA17_Chr8g0370961 31.441 229 145 4 136 360 19 239 6.40e-39 139
Msa1037920 MtrunA17_Chr1g0160031 31.519 349 188 13 34 350 39 368 1.36e-32 125
Msa1037920 MtrunA17_Chr7g0229591 43.046 151 84 2 34 183 30 179 3.99e-31 117
Msa1037920 MtrunA17_Chr1g0159971 28.841 371 221 14 9 350 22 378 7.08e-31 121
Msa1037920 MtrunA17_Chr4g0027571 29.279 222 153 3 137 356 3 222 1.22e-30 116
Msa1037920 MtrunA17_Chr8g0381581 27.704 379 225 14 4 350 13 374 1.88e-30 120
Msa1037920 MtrunA17_Chr7g0271551 29.619 341 199 12 36 357 38 356 3.73e-30 118
Msa1037920 MtrunA17_Chr8g0347751 27.604 384 231 15 1 351 1 370 3.79e-30 119
Msa1037920 MtrunA17_Chr1g0160011 32.277 347 188 13 34 350 40 369 5.89e-30 118
Msa1037920 MtrunA17_Chr2g0283481 30.199 351 215 13 34 363 47 388 1.31e-29 117
Msa1037920 MtrunA17_Chr6g0455661 26.786 224 161 2 132 353 238 460 3.32e-29 117
Msa1037920 MtrunA17_Chr6g0455661 54.348 92 39 2 34 125 31 119 2.20e-21 95.1
Msa1037920 MtrunA17_Chr2g0283511 28.889 360 224 13 14 350 11 361 5.17e-29 115
Msa1037920 MtrunA17_Chr7g0275291 28.035 346 208 11 33 351 32 363 6.93e-29 115
Msa1037920 MtrunA17_Chr1g0159991 31.389 360 195 14 34 359 36 377 7.00e-29 115
Msa1037920 MtrunA17_Chr1g0160101 30.411 365 197 16 34 361 42 386 8.70e-29 115
Msa1037920 MtrunA17_Chr2g0283501 28.261 368 221 13 8 350 11 360 1.25e-28 114
Msa1037920 MtrunA17_Chr6g0459921 28.571 189 134 1 164 352 161 348 4.13e-28 113
Msa1037920 MtrunA17_Chr6g0450731 28.060 335 206 10 34 351 33 349 7.94e-27 109
Msa1037920 MtrunA17_Chr7g0254461 26.923 364 214 15 34 361 43 390 1.95e-26 108
Msa1037920 MtrunA17_Chr6g0450721 29.674 337 196 11 34 351 33 347 2.90e-26 107
Msa1037920 MtrunA17_Chr1g0159981 28.866 388 218 15 12 359 18 387 5.28e-26 107
Msa1037920 MtrunA17_Chr3g0104821 26.479 355 214 13 26 350 36 373 7.06e-26 107
Msa1037920 MtrunA17_Chr1g0198351 26.730 318 192 13 34 337 43 333 3.88e-25 104
Msa1037920 MtrunA17_Chr7g0273101 28.571 350 200 13 34 350 29 361 4.72e-25 104
Msa1037920 MtrunA17_Chr1g0191461 28.613 346 202 12 34 349 31 361 6.55e-25 104
Msa1037920 MtrunA17_Chr6g0450711 29.885 348 194 14 34 351 122 449 1.06e-24 104
Msa1037920 MtrunA17_Chr6g0450701 31.214 346 192 13 34 351 39 366 1.21e-24 103
Msa1037920 MtrunA17_Chr1g0178941 26.543 324 196 11 33 337 39 339 1.84e-24 102
Msa1037920 MtrunA17_Chr1g0178931 25.688 327 207 13 33 347 36 338 7.23e-24 100
Msa1037920 MtrunA17_Chr7g0266061 26.582 316 197 10 34 337 42 334 1.94e-23 99.8
Msa1037920 MtrunA17_Chr8g0352901 30.526 380 210 14 4 351 3 360 2.85e-23 99.8
Msa1037920 MtrunA17_Chr7g0226911 25.260 384 215 13 19 351 10 372 1.17e-22 98.2
Msa1037920 MtrunA17_Chr2g0301581 27.869 366 211 13 12 350 7 346 1.63e-22 97.4
Msa1037920 MtrunA17_Chr7g0226941 28.492 358 207 15 34 358 33 374 3.51e-22 96.7
Msa1037920 MtrunA17_Chr6g0469511 45.614 114 60 2 34 146 30 142 9.97e-22 90.1
Msa1037920 MtrunA17_Chr2g0283531 29.683 347 196 17 34 350 31 359 1.34e-21 95.1
Msa1037920 MtrunA17_Chr2g0301541 27.322 366 213 13 12 350 7 346 8.24e-21 92.4
Msa1037920 MtrunA17_Chr1g0198381 26.409 337 192 15 35 349 3 305 1.01e-20 91.7
Msa1037920 MtrunA17_Chr3g0093031 26.074 349 218 14 33 357 29 361 1.09e-20 92.4
Msa1037920 MtrunA17_Chr4g0027561 48.980 98 49 1 34 130 30 127 1.19e-20 87.4
Msa1037920 MtrunA17_Chr3g0112821 26.163 344 219 13 33 357 29 356 1.91e-20 91.7
Msa1037920 MtrunA17_Chr7g0229581 31.081 148 100 2 211 356 8 155 1.02e-19 85.1
Msa1037920 MtrunA17_Chr7g0226931 24.112 394 228 12 12 351 10 386 1.40e-19 89.4
Msa1037920 MtrunA17_Chr3g0112691 29.014 355 198 21 33 357 29 359 2.54e-19 88.2
Msa1037920 MtrunA17_Chr5g0440501 25.833 240 159 6 121 349 1 232 3.25e-19 86.3
Msa1037920 MtrunA17_Chr8g0370971 48.000 100 47 3 31 125 35 134 5.07e-19 83.6
Msa1037920 MtrunA17_Chr2g0321991 43.119 109 59 2 14 119 11 119 5.27e-17 76.6
Msa1037920 MtrunA17_Chr4g0057991 25.753 365 219 15 18 350 18 362 8.79e-17 80.9
Msa1037920 MtrunA17_Chr1g0198391 23.373 338 196 12 35 337 34 343 1.34e-13 71.2
Msa1037920 MtrunA17_Chr2g0284931 25.112 223 140 4 146 366 23 220 1.67e-13 69.3
Msa1037920 MtrunA17_Chr2g0301591 28.417 278 146 11 12 265 7 255 2.60e-12 66.6
Msa1037920 MtrunA17_Chr8g0339251 26.821 302 192 11 24 314 18 301 5.32e-12 66.2
Msa1037920 MtrunA17_Chr4g0018571 29.605 152 105 2 207 356 27 178 1.17e-11 63.2
Msa1037920 MtrunA17_Chr4g0018561 60.000 45 18 0 34 78 30 74 1.55e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1037920 AT5G33370.1 75.893 336 81 0 33 368 29 364 0.0 554
Msa1037920 AT3G04290.1 75.588 340 83 0 30 369 25 364 0.0 543
Msa1037920 AT5G18430.1 74.631 339 84 2 30 366 24 362 0.0 523
Msa1037920 AT4G28780.1 67.486 366 113 3 9 369 2 366 0.0 512
Msa1037920 AT5G33370.2 75.573 262 64 0 33 294 29 290 5.55e-149 424
Msa1037920 AT3G50400.1 39.227 362 204 11 14 360 8 368 4.85e-79 247
Msa1037920 AT2G23540.1 38.279 337 201 6 34 363 48 384 1.47e-78 246
Msa1037920 AT1G29660.1 39.118 363 215 5 7 366 5 364 3.04e-77 242
Msa1037920 AT5G15720.1 38.279 337 202 4 34 366 30 364 4.08e-76 239
Msa1037920 AT5G08460.1 36.639 363 222 4 4 361 21 380 1.05e-75 239
Msa1037920 AT1G71691.2 40.299 335 194 6 34 367 55 384 4.92e-74 235
Msa1037920 AT5G37690.1 39.809 314 185 4 36 348 29 339 5.62e-74 234
Msa1037920 AT2G04570.1 35.000 340 215 5 15 351 9 345 7.84e-72 228
Msa1037920 AT1G71250.1 36.418 335 209 3 34 366 41 373 1.77e-71 228
Msa1037920 AT2G42990.1 35.127 353 209 9 7 349 1 343 5.42e-70 223
Msa1037920 AT4G26790.1 35.737 319 199 5 34 349 29 344 1.50e-69 222
Msa1037920 AT4G26790.2 35.737 319 199 5 34 349 29 344 1.50e-69 222
Msa1037920 AT1G33811.1 37.746 355 204 8 26 366 19 370 2.00e-69 223
Msa1037920 AT5G37690.2 38.217 314 182 5 36 348 29 331 2.67e-68 219
Msa1037920 AT5G45670.1 38.739 333 198 5 14 343 9 338 1.24e-67 218
Msa1037920 AT5G42170.1 36.909 317 191 5 35 348 51 361 1.92e-67 217
Msa1037920 AT1G29670.1 35.501 369 223 6 7 366 1 363 1.99e-67 217
Msa1037920 AT1G29670.2 35.310 371 225 6 5 366 67 431 1.13e-66 217
Msa1037920 AT5G03820.1 36.232 345 207 6 14 348 8 349 1.14e-66 215
Msa1037920 AT1G75890.2 36.250 320 191 7 34 346 47 360 2.75e-66 214
Msa1037920 AT5G03820.2 35.897 351 212 6 8 348 30 377 2.88e-66 215
Msa1037920 AT1G06990.1 35.294 323 198 5 34 348 37 356 3.50e-66 214
Msa1037920 AT3G16370.1 36.677 319 195 6 34 348 30 345 4.56e-66 213
Msa1037920 AT1G75890.3 36.250 320 191 7 34 346 76 389 5.30e-66 214
Msa1037920 AT4G18970.1 39.617 313 181 5 35 343 29 337 1.17e-65 213
Msa1037920 AT4G18970.2 39.490 314 182 5 34 343 28 337 6.23e-65 212
Msa1037920 AT1G74460.1 36.646 322 199 5 36 355 25 343 6.47e-65 211
Msa1037920 AT5G03810.1 36.337 344 207 6 14 348 5 345 8.98e-65 210
Msa1037920 AT5G45950.1 34.161 322 202 8 34 353 40 353 1.73e-64 209
Msa1037920 AT1G75880.1 36.025 322 195 5 34 349 52 368 3.69e-64 209
Msa1037920 AT5G41890.1 35.756 344 195 9 36 360 33 369 6.31e-64 208
Msa1037920 AT1G75890.1 34.835 333 191 8 34 346 47 373 6.87e-64 208
Msa1037920 AT3G53100.1 36.499 337 206 6 16 348 11 343 1.06e-63 207
Msa1037920 AT2G30220.1 35.370 311 193 6 34 339 33 340 1.72e-63 207
Msa1037920 AT1G58430.1 34.234 333 208 6 14 337 10 340 2.05e-63 206
Msa1037920 AT2G30310.1 34.286 315 199 6 34 343 34 345 2.60e-63 206
Msa1037920 AT5G22810.1 37.963 324 186 10 34 348 34 351 2.74e-63 206
Msa1037920 AT1G75880.2 36.025 322 194 6 34 349 52 367 3.02e-63 206
Msa1037920 AT1G20120.1 35.093 322 197 6 34 349 78 393 3.89e-63 207
Msa1037920 AT5G45960.1 34.891 321 197 6 27 339 40 356 7.16e-62 203
Msa1037920 AT2G24560.1 32.551 341 213 7 9 337 4 339 2.13e-61 201
Msa1037920 AT2G31540.1 35.032 314 198 5 34 343 35 346 4.82e-61 201
Msa1037920 AT5G55050.1 34.412 340 210 7 35 365 40 375 4.91e-61 201
Msa1037920 AT4G10950.2 33.934 333 217 3 34 364 71 402 1.38e-59 198
Msa1037920 AT1G59406.1 32.303 356 230 6 5 356 1 349 6.71e-59 194
Msa1037920 AT1G59030.1 32.303 356 230 6 5 356 1 349 6.71e-59 194
Msa1037920 AT1G58725.1 32.303 356 230 6 5 356 1 349 6.71e-59 194
Msa1037920 AT2G19060.1 34.796 319 192 7 35 350 31 336 8.96e-59 194
Msa1037920 AT2G40250.1 33.019 318 201 4 34 343 36 349 2.12e-57 191
Msa1037920 AT3G14820.1 33.333 330 200 8 34 355 32 349 2.36e-57 191
Msa1037920 AT4G10950.1 33.934 333 213 4 34 364 71 398 3.19e-57 192
Msa1037920 AT1G75900.1 33.540 322 199 7 34 348 43 356 1.05e-56 189
Msa1037920 AT1G20130.2 33.535 331 199 7 34 348 184 509 2.66e-56 192
Msa1037920 AT1G20130.1 33.535 331 199 7 34 348 204 529 3.39e-56 192
Msa1037920 AT1G58520.3 33.333 327 200 7 34 356 30 342 5.94e-56 187
Msa1037920 AT1G58525.1 33.333 327 200 7 34 356 30 342 5.94e-56 187
Msa1037920 AT1G71691.1 36.842 285 175 5 84 367 3 283 3.18e-55 183
Msa1037920 AT2G19010.1 33.945 327 198 7 35 358 31 342 7.38e-55 184
Msa1037920 AT1G73610.1 35.692 325 188 8 28 349 31 337 1.14e-54 183
Msa1037920 AT2G19010.2 33.841 328 199 7 34 358 60 372 1.19e-54 184
Msa1037920 AT2G19050.1 33.022 321 193 8 35 350 32 335 2.27e-54 183
Msa1037920 AT1G20132.1 33.033 333 206 8 34 359 61 383 5.60e-54 182
Msa1037920 AT5G15720.3 33.929 280 181 3 85 360 48 327 9.20e-54 181
Msa1037920 AT1G20135.1 31.845 336 212 8 7 339 1 322 1.13e-53 180
Msa1037920 AT4G30140.1 34.925 335 192 8 35 364 34 347 3.04e-53 180
Msa1037920 AT3G43570.1 29.944 354 212 6 5 356 1 320 7.86e-53 178
Msa1037920 AT5G63170.1 32.738 336 208 7 7 339 1 321 8.98e-52 176
Msa1037920 AT5G15720.2 37.175 269 163 4 34 298 30 296 2.16e-50 171
Msa1037920 AT5G40990.1 30.105 382 244 8 1 367 1 374 2.60e-50 173
Msa1037920 AT4G16230.1 46.535 202 104 3 34 233 30 229 3.84e-50 169
Msa1037920 AT1G23500.1 30.966 352 220 8 3 350 7 339 9.00e-49 168
Msa1037920 AT1G71691.3 40.458 262 150 6 34 294 55 311 3.46e-48 166
Msa1037920 AT1G71120.1 34.795 342 202 12 27 360 24 352 5.12e-48 166
Msa1037920 AT2G24560.2 31.879 298 186 7 9 294 4 296 2.18e-47 164
Msa1037920 AT1G53940.2 31.909 351 213 10 32 367 37 376 1.41e-45 160
Msa1037920 AT2G19050.2 35.417 240 147 4 35 274 32 263 1.15e-44 155
Msa1037920 AT3G43550.1 31.741 293 190 5 5 294 1 286 1.08e-43 153
Msa1037920 AT1G75930.1 31.138 334 208 9 22 348 17 335 2.15e-43 154
Msa1037920 AT1G75920.2 29.969 327 199 9 34 349 29 336 2.89e-43 154
Msa1037920 AT1G75910.1 29.738 343 220 8 15 348 5 335 7.11e-43 152
Msa1037920 AT3G14225.1 28.940 349 228 7 32 366 35 377 2.24e-42 152
Msa1037920 AT3G14225.2 29.310 348 224 8 32 366 35 373 5.20e-42 151
Msa1037920 AT1G53920.1 29.231 325 214 7 34 350 48 364 4.25e-41 149
Msa1037920 AT1G53990.1 28.647 377 238 12 5 366 4 364 8.54e-41 147
Msa1037920 AT1G75920.1 28.655 342 199 10 34 349 24 346 1.81e-39 144
Msa1037920 AT2G03980.2 29.936 314 204 7 34 340 43 347 6.87e-38 140
Msa1037920 AT2G03980.3 29.936 314 204 7 34 340 43 347 6.87e-38 140
Msa1037920 AT2G03980.1 29.936 314 204 7 34 340 43 347 6.87e-38 140
Msa1037920 AT2G03980.4 29.936 314 204 7 34 340 43 347 6.87e-38 140
Msa1037920 AT2G31550.1 30.732 205 139 2 141 343 2 205 1.48e-35 129
Msa1037920 AT1G75920.3 28.882 322 178 9 34 349 29 305 3.54e-35 131
Msa1037920 AT1G56670.1 29.787 376 215 11 3 349 2 357 4.16e-35 132
Msa1037920 AT1G75920.4 28.000 300 186 9 61 349 28 308 5.83e-33 125
Msa1037920 AT4G01130.1 27.249 378 229 12 8 354 9 371 2.86e-31 122
Msa1037920 AT1G09390.1 29.664 327 206 9 36 349 39 354 6.62e-30 118
Msa1037920 AT1G54030.1 27.300 337 218 11 33 366 51 363 1.55e-29 118
Msa1037920 AT5G45910.1 30.618 356 201 15 27 350 23 364 8.89e-29 115
Msa1037920 AT2G04020.1 32.456 228 135 5 34 251 43 261 2.88e-28 111
Msa1037920 AT1G53940.1 30.882 272 168 9 32 294 37 297 7.69e-27 108
Msa1037920 AT3G26430.1 27.926 376 219 13 13 350 4 365 1.38e-26 109
Msa1037920 AT2G04020.2 32.367 207 127 4 34 236 43 240 1.62e-26 108
Msa1037920 AT1G54790.3 27.321 377 226 13 6 350 4 364 2.27e-26 108
Msa1037920 AT3G09930.2 27.726 321 191 13 35 338 40 336 5.63e-26 107
Msa1037920 AT3G09930.1 27.726 321 191 13 35 338 40 336 5.63e-26 107
Msa1037920 AT5G03610.1 28.972 321 186 14 36 339 45 340 8.49e-26 107
Msa1037920 AT1G67830.1 28.490 351 205 12 34 352 30 366 1.01e-25 107
Msa1037920 AT2G27360.1 28.021 389 237 16 6 369 8 378 1.21e-25 107
Msa1037920 AT3G14220.1 26.374 364 213 15 24 364 20 351 1.26e-25 106
Msa1037920 AT5G14450.1 26.579 380 233 12 3 350 8 373 3.99e-25 105
Msa1037920 AT1G54000.1 27.066 351 215 13 34 368 36 361 9.70e-25 104
Msa1037920 AT3G27950.1 27.869 366 220 11 14 351 9 358 1.27e-24 103
Msa1037920 AT4G16233.1 36.000 125 79 1 243 366 6 130 1.54e-24 97.8
Msa1037920 AT3G62280.1 28.319 339 207 11 38 359 40 359 1.94e-24 103
Msa1037920 AT1G28580.1 29.261 352 202 17 26 350 35 366 3.74e-24 102
Msa1037920 AT1G31550.2 28.307 378 216 18 5 350 10 364 4.39e-24 102
Msa1037920 AT1G28570.1 27.820 399 234 20 5 371 6 382 1.39e-23 101
Msa1037920 AT1G54020.2 25.826 333 223 9 36 364 35 347 4.70e-23 99.4
Msa1037920 AT3G14210.1 27.624 362 213 14 30 371 32 364 8.13e-23 99.0
Msa1037920 AT1G28600.1 27.394 376 221 14 7 350 4 359 9.13e-23 99.0
Msa1037920 AT1G56670.2 29.114 316 180 9 3 294 2 297 1.46e-22 96.7
Msa1037920 AT3G05180.1 27.089 347 209 11 34 350 36 368 2.98e-22 97.4
Msa1037920 AT1G28650.1 27.321 377 236 14 1 350 1 366 3.46e-22 97.1
Msa1037920 AT1G54010.1 25.656 343 216 12 36 364 38 355 9.29e-22 95.9
Msa1037920 AT1G28610.2 26.385 379 230 17 1 350 1 359 1.02e-21 95.9
Msa1037920 AT3G48460.1 26.287 369 226 15 12 351 13 364 1.67e-21 95.1
Msa1037920 AT1G28670.1 28.493 365 217 16 13 350 18 365 2.76e-21 94.7
Msa1037920 AT4G16220.1 49.558 113 53 3 14 125 11 120 3.64e-21 91.7
Msa1037920 AT4G01130.3 25.430 291 180 8 95 354 1 285 3.98e-21 92.8
Msa1037920 AT1G54790.1 27.089 347 205 13 36 350 33 363 5.06e-21 94.0
Msa1037920 AT4G01130.2 26.557 305 191 10 8 294 9 298 1.26e-20 92.0
Msa1037920 AT1G28640.1 27.793 367 218 17 13 351 18 365 2.73e-19 89.0
Msa1037920 AT1G54030.2 28.333 240 147 9 33 269 51 268 3.35e-19 87.8
Msa1037920 AT1G28590.1 27.299 348 214 14 26 350 34 365 1.67e-18 86.7
Msa1037920 AT1G28660.1 28.739 341 200 14 38 350 39 364 7.28e-18 84.7
Msa1037920 AT1G54790.2 26.471 374 199 16 36 350 33 389 3.09e-17 82.8
Msa1037920 AT2G36325.1 25.846 325 207 14 36 348 49 351 1.54e-15 77.4
Msa1037920 AT1G54020.4 23.786 206 152 2 161 364 10 212 1.76e-13 69.7
Msa1037920 AT1G28580.2 26.298 289 180 13 84 350 8 285 2.25e-13 70.5
Msa1037920 AT1G54020.1 23.786 206 152 2 161 364 59 261 3.21e-13 69.7
Msa1037920 AT1G54020.5 23.786 206 152 2 161 364 59 261 3.21e-13 69.7
Msa1037920 AT1G54020.3 23.786 206 152 2 161 364 59 261 3.21e-13 69.7
Msa1037920 AT1G28600.2 31.250 192 97 10 26 203 29 199 9.35e-11 61.6

Find 98 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAGATCAAGTACTATTT+AGG 0.206822 7_1:-74664558 None:intergenic
CAACAACTCAACAATGAAAT+TGG 0.265556 7_1:+74664001 Msa1037920:CDS
CAATTTCATTGTTGAGTTGT+TGG 0.301857 7_1:-74664000 None:intergenic
TTAAGTTCAGGGCTTAAATA+AGG 0.302412 7_1:-74662371 None:intergenic
TAAACATAATTAGAATATTT+AGG 0.305299 7_1:+74662634 Msa1037920:CDS
AATGCCAGCAGAAGCAAAAT+TGG 0.310076 7_1:-74662417 None:intergenic
TAAATCCATGTCTGCCACTA+TGG 0.318143 7_1:+74661836 Msa1037920:exon
ACCGTGACGAATATGCATTT+TGG 0.331582 7_1:+74664294 Msa1037920:CDS
GGTGATTCTCTTGTTGATAA+TGG 0.342192 7_1:+74661957 Msa1037920:CDS
TTCACTTACAAATTGGATTC+CGG 0.346478 7_1:-74662456 None:intergenic
AATTAGAATATTTAGGCAAT+TGG 0.350952 7_1:+74662641 Msa1037920:CDS
CGAGCTGATGCTCCTCCTTA+TGG 0.356092 7_1:+74662008 Msa1037920:CDS
CAACGTGCTTTCTTTGTGTT+TGG 0.358588 7_1:+74661936 Msa1037920:CDS
ATTTAAGCCCTGAACTTAAC+GGG 0.376401 7_1:+74662375 Msa1037920:CDS
ATCACGCCAATACAATTTAC+CGG 0.383099 7_1:+74662809 Msa1037920:CDS
AATGCATATTCGTCACGGTT+AGG 0.390126 7_1:-74664290 None:intergenic
TCAAGATCAAGTACTATTTA+GGG 0.390467 7_1:-74664557 None:intergenic
CCCACTGGACGTTTCTCTAA+TGG 0.397307 7_1:+74662053 Msa1037920:CDS
AGTGTAGTTACCATATGCTT+GGG 0.398411 7_1:-74664083 None:intergenic
AATTGGTTCAAATGTATTCA+TGG 0.399785 7_1:+74664018 Msa1037920:CDS
TGTGATTTATATGTATAAGT+TGG 0.401902 7_1:+74664510 Msa1037920:three_prime_UTR
ATGCATATTCGTCACGGTTA+GGG 0.409068 7_1:-74664289 None:intergenic
ATCTTTCCCCGTTAAGTTCA+GGG 0.412800 7_1:-74662382 None:intergenic
TATTTAAGCCCTGAACTTAA+CGG 0.415361 7_1:+74662374 Msa1037920:CDS
AATCTTTCCCCGTTAAGTTC+AGG 0.420441 7_1:-74662383 None:intergenic
TTAGCCCAACGAGGCACAAA+TGG 0.422424 7_1:+74663914 Msa1037920:CDS
AAAACAGTGCTGAGATTCAT+TGG 0.424708 7_1:-74664395 None:intergenic
GTCAATAATCCCCAAGCATA+TGG 0.428487 7_1:+74664073 Msa1037920:CDS
ATTCATTGGATACATATAAT+CGG 0.429212 7_1:-74664381 None:intergenic
ACTAAGCTCTGAGTTTGTTC+AGG 0.433324 7_1:-74662708 None:intergenic
GGGCTTAAATAAGGCAAAGT+TGG 0.437321 7_1:-74662362 None:intergenic
TTTATATGTATAAGTTGGAT+TGG 0.442171 7_1:+74664515 Msa1037920:three_prime_UTR
ATTATATATCTGACATAATC+CGG 0.451030 7_1:-74662828 None:intergenic
CCTCGTTGGGCTAATTCTGC+TGG 0.453275 7_1:-74663905 None:intergenic
CAGAGAGTGAGTGGTCTCAT+TGG 0.455448 7_1:+74662684 Msa1037920:CDS
CAAGGACCCTACAATGGACT+TGG 0.456753 7_1:+74664239 Msa1037920:CDS
AACGGGGAAAGATTGCTTGT+TGG 0.457936 7_1:+74662392 Msa1037920:CDS
GCATAGCCCAAGTCCATTGT+AGG 0.458058 7_1:-74664246 None:intergenic
TAGCCCAACGAGGCACAAAT+GGG 0.458650 7_1:+74663915 Msa1037920:CDS
CATAATCCGGTAAATTGTAT+TGG 0.459599 7_1:-74662815 None:intergenic
GTGACAGGAACTGGTCCAAT+TGG 0.469779 7_1:+74663875 Msa1037920:CDS
TATCAGAGACTATACGATCT+TGG 0.471453 7_1:+74663836 Msa1037920:intron
TCTTTATTATCAATCTCTCT+TGG 0.473014 7_1:+74664615 Msa1037920:three_prime_UTR
TCTGCTGGAACACAACCAAT+TGG 0.476413 7_1:-74663890 None:intergenic
GATCATATTGATGGTGGCAT+TGG 0.489406 7_1:+74661887 Msa1037920:CDS
GCATTAGTACTCATCACTCT+TGG 0.489433 7_1:+74662738 Msa1037920:CDS
TTATCTTAACTGATAAAGTC+AGG 0.489894 7_1:-74662086 None:intergenic
TAGTGTAGTTACCATATGCT+TGG 0.491230 7_1:-74664084 None:intergenic
TGCATTCCATCCATCTGAAA+AGG 0.500058 7_1:+74664319 Msa1037920:CDS
AGGGTGATAGTGACAGGAAC+TGG 0.502345 7_1:+74663866 Msa1037920:CDS
CTAGTGGAAGTGCAAACTCT+TGG 0.502495 7_1:-74664773 None:intergenic
CAAGAGTTTGCACTTCCACT+AGG 0.504082 7_1:+74664774 Msa1037920:three_prime_UTR
ATCATATTGATGGTGGCATT+GGG 0.506068 7_1:+74661888 Msa1037920:CDS
TATCCAACTCGCAGACCCAC+TGG 0.509258 7_1:+74662038 Msa1037920:CDS
TGGCGTGATCTTGCAGAGAA+TGG 0.511244 7_1:-74662795 None:intergenic
TGCAGGATTTGTTACATCAC+AGG 0.514441 7_1:+74664202 Msa1037920:intron
CGTCCAGTGGGTCTGCGAGT+TGG 0.515271 7_1:-74662041 None:intergenic
CAATGTAGTGATCATATTGA+TGG 0.516090 7_1:+74661878 Msa1037920:CDS
ATTGGTTCAAATGTATTCAT+GGG 0.520468 7_1:+74664019 Msa1037920:CDS
GTCTTAGTAGTGGATGGATG+AGG 0.525532 7_1:+74664581 Msa1037920:three_prime_UTR
AAGGGCCATCTGCCTTGTGT+TGG 0.528064 7_1:-74664044 None:intergenic
CAAAACCATAGTGGCAGACA+TGG 0.531076 7_1:-74661841 None:intergenic
GCACGTAGGGTGATAGTGAC+AGG 0.541987 7_1:+74663860 Msa1037920:CDS
GTTGGATAATCAATGCCATA+AGG 0.544090 7_1:-74662023 None:intergenic
ATTGGAATTCTCAATGATAC+CGG 0.545783 7_1:+74662437 Msa1037920:CDS
CAGGTAGCATGTTGTGGTCA+AGG 0.547719 7_1:+74664221 Msa1037920:CDS
GGGGATTATTGACGAAGTCA+AGG 0.550662 7_1:-74664063 None:intergenic
GGGATTATTGACGAAGTCAA+GGG 0.554031 7_1:-74664062 None:intergenic
TCTTAGTAGTGGATGGATGA+GGG 0.554581 7_1:+74664582 Msa1037920:three_prime_UTR
TTAGTACTCATCACTCTTGG+AGG 0.555068 7_1:+74662741 Msa1037920:CDS
TGAGACCACTCACTCTCTGC+TGG 0.555778 7_1:-74662680 None:intergenic
GGGAGCCAACACAAGGCAGA+TGG 0.561056 7_1:+74664039 Msa1037920:CDS
CAAACTCAGAGCTTAGTGAA+TGG 0.565128 7_1:+74662714 Msa1037920:CDS
TGATCTTGATGTCTTAGTAG+TGG 0.568020 7_1:+74664571 Msa1037920:three_prime_UTR
TGGATTATTTGAATAAGTTG+TGG 0.570455 7_1:-74663980 None:intergenic
CTTGATGTCTTAGTAGTGGA+TGG 0.577600 7_1:+74664575 Msa1037920:three_prime_UTR
CCCAAAATGCATATTCGTCA+CGG 0.577781 7_1:-74664295 None:intergenic
ATACGATCTTGGAGCACGTA+GGG 0.582644 7_1:+74663847 Msa1037920:CDS
CATAGCCCAAGTCCATTGTA+GGG 0.588202 7_1:-74664245 None:intergenic
CAATACCAGCAGAGAGTGAG+TGG 0.596408 7_1:+74662675 Msa1037920:CDS
ATAAGACTGCAAAACCATAG+TGG 0.606330 7_1:-74661850 None:intergenic
GTGTAGTTACCATATGCTTG+GGG 0.609486 7_1:-74664082 None:intergenic
ACATCACAGGTAGCATGTTG+TGG 0.620663 7_1:+74664215 Msa1037920:CDS
GCCCAACGAGGCACAAATGG+GGG 0.622538 7_1:+74663917 Msa1037920:CDS
CCATTAGAGAAACGTCCAGT+GGG 0.622708 7_1:-74662053 None:intergenic
TTTAAGCCCTGAACTTAACG+GGG 0.625695 7_1:+74662376 Msa1037920:CDS
TATTCATGGGAGCCAACACA+AGG 0.646177 7_1:+74664032 Msa1037920:CDS
TGTGGTCAAGGACCCTACAA+TGG 0.648138 7_1:+74664233 Msa1037920:CDS
GCCATTAGAGAAACGTCCAG+TGG 0.648287 7_1:-74662054 None:intergenic
AGCCCAACGAGGCACAAATG+GGG 0.652571 7_1:+74663916 Msa1037920:CDS
AAGGACCCTACAATGGACTT+GGG 0.653866 7_1:+74664240 Msa1037920:CDS
ACTTCAAGTTCAATGCCTAG+TGG 0.666310 7_1:-74664789 None:intergenic
GGATAATCAATGCCATAAGG+AGG 0.667878 7_1:-74662020 None:intergenic
TTAGGGCATAAATTAGAGAG+TGG 0.679349 7_1:-74664272 None:intergenic
TGTAGTGATCATATTGATGG+TGG 0.697508 7_1:+74661881 Msa1037920:CDS
TATACGATCTTGGAGCACGT+AGG 0.722293 7_1:+74663846 Msa1037920:CDS
CCAGCAGAATTAGCCCAACG+AGG 0.739648 7_1:+74663905 Msa1037920:CDS
AAGTTGTTTCAAAAGCACAG+TGG 0.778633 7_1:+74661911 Msa1037920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTATTACATTTTAATTTA+AGG + chr7_1:74662564-74662583 Msa1037920:intron 10.0%
!! TAAACATAATTAGAATATTT+AGG + chr7_1:74662634-74662653 Msa1037920:CDS 10.0%
!!! TTTTCTTAGATTATTAAAAA+AGG - chr7_1:74663344-74663363 None:intergenic 10.0%
!! TTCAAATGTTATTATTATAA+GGG - chr7_1:74663793-74663812 None:intergenic 10.0%
!! ATTCAAATGTTATTATTATA+AGG - chr7_1:74663794-74663813 None:intergenic 10.0%
!! TATATAGAGTAATTTAATAA+TGG + chr7_1:74664122-74664141 Msa1037920:intron 10.0%
!! TAATGTTAATCACATTATTA+CGG - chr7_1:74662283-74662302 None:intergenic 15.0%
!! TATTTAATGTATGTTTGAAT+TGG - chr7_1:74662538-74662557 None:intergenic 15.0%
!! AATAAATCAAACCAAATAAA+TGG - chr7_1:74662948-74662967 None:intergenic 15.0%
!! ATATAAAATGCACATTTAAT+TGG + chr7_1:74662981-74663000 Msa1037920:intron 15.0%
!! TATCATAAAACAAAACAAAA+CGG - chr7_1:74663275-74663294 None:intergenic 15.0%
!!! TTAATAAACTTTGTTTATTG+TGG - chr7_1:74663511-74663530 None:intergenic 15.0%
!! ATATGTTCGAATTATAATAA+GGG + chr7_1:74663600-74663619 Msa1037920:intron 15.0%
!!! AAATATAGTAGTTTTTGTAT+CGG + chr7_1:74663660-74663679 Msa1037920:intron 15.0%
!!! TCATTCAAAATTTACTTTTT+TGG + chr7_1:74663728-74663747 Msa1037920:intron 15.0%
!! AATGTTAATCACATTATTAC+GGG - chr7_1:74662282-74662301 None:intergenic 20.0%
!! AATTAGAATATTTAGGCAAT+TGG + chr7_1:74662641-74662660 Msa1037920:CDS 20.0%
!!! TTTTGTGAATAACTATTACT+TGG + chr7_1:74662770-74662789 Msa1037920:CDS 20.0%
!! ATTATATATCTGACATAATC+CGG - chr7_1:74662831-74662850 None:intergenic 20.0%
!!! ATTTGGTTTGATTTATTTCA+AGG + chr7_1:74662951-74662970 Msa1037920:intron 20.0%
!!! GTAAGTAACGAATTTTTTTT+AGG + chr7_1:74663033-74663052 Msa1037920:intron 20.0%
!! GTCAATTACCATAAATAATT+TGG + chr7_1:74663199-74663218 Msa1037920:intron 20.0%
!! TTGAGTTACCAAATTATTTA+TGG - chr7_1:74663210-74663229 None:intergenic 20.0%
!!! TTCAAAAAAATGTGACATTT+TGG - chr7_1:74663396-74663415 None:intergenic 20.0%
!! TATAAAATGCCTCATTTATT+GGG - chr7_1:74663440-74663459 None:intergenic 20.0%
!! ATATAAAATGCCTCATTTAT+TGG - chr7_1:74663441-74663460 None:intergenic 20.0%
!! GATATGTTCGAATTATAATA+AGG + chr7_1:74663599-74663618 Msa1037920:intron 20.0%
!! TAGCATAACTATTAGATTTA+TGG + chr7_1:74664145-74664164 Msa1037920:intron 20.0%
!! ATTCATTGGATACATATAAT+CGG - chr7_1:74664384-74664403 None:intergenic 20.0%
!! TGTGATTTATATGTATAAGT+TGG + chr7_1:74664510-74664529 Msa1037920:three_prime_UTR 20.0%
!!! TTTATATGTATAAGTTGGAT+TGG + chr7_1:74664515-74664534 Msa1037920:three_prime_UTR 20.0%
!! ACATAGTAAAAAAAAAAGAG+CGG - chr7_1:74664711-74664730 None:intergenic 20.0%
! TTATCTTAACTGATAAAGTC+AGG - chr7_1:74662089-74662108 None:intergenic 25.0%
! GGATATAAATTAACTTTGCA+TGG - chr7_1:74662259-74662278 None:intergenic 25.0%
! ATGTTAATCACATTATTACG+GGG - chr7_1:74662281-74662300 None:intergenic 25.0%
!! ATTTTATGCAATGATTTTGC+AGG + chr7_1:74662320-74662339 Msa1037920:intron 25.0%
!! TGAGTATAAGAAGATTTTGA+GGG + chr7_1:74662854-74662873 Msa1037920:CDS 25.0%
! ATAATAAAGGAAGAAAGTGA+TGG - chr7_1:74662902-74662921 None:intergenic 25.0%
! AGGAAAAAGACGTATAATAA+AGG - chr7_1:74662915-74662934 None:intergenic 25.0%
! AAAATGCACATTTAATTGGT+TGG + chr7_1:74662985-74663004 Msa1037920:intron 25.0%
!!! ATTCGTTACTTACTTTTTGA+CGG - chr7_1:74663026-74663045 None:intergenic 25.0%
! TGATGCAAAATTTGCAATAT+TGG - chr7_1:74663080-74663099 None:intergenic 25.0%
! ATTAGATCAATATCCAATGA+TGG - chr7_1:74663118-74663137 None:intergenic 25.0%
! ATCATTGGATATTGATCTAA+TGG + chr7_1:74663117-74663136 Msa1037920:intron 25.0%
! CTAATGTGCACAAATAAATT+AGG - chr7_1:74663173-74663192 None:intergenic 25.0%
!! AATAATTTGGTAACTCAAGT+AGG + chr7_1:74663212-74663231 Msa1037920:intron 25.0%
! TTTCTTTCATAGATCTAAAG+TGG + chr7_1:74663308-74663327 Msa1037920:intron 25.0%
!!! ATGTCACATTTTTTTGAAGT+AGG + chr7_1:74663398-74663417 Msa1037920:intron 25.0%
!!! GTAATGTATGTTTGTTATCA+TGG + chr7_1:74663461-74663480 Msa1037920:intron 25.0%
! TTTATTAAGATGCACTTCAA+TGG + chr7_1:74663523-74663542 Msa1037920:intron 25.0%
! TGGATTATTTGAATAAGTTG+TGG - chr7_1:74663983-74664002 None:intergenic 25.0%
!! AATTGGTTCAAATGTATTCA+TGG + chr7_1:74664018-74664037 Msa1037920:CDS 25.0%
!! ATTGGTTCAAATGTATTCAT+GGG + chr7_1:74664019-74664038 Msa1037920:CDS 25.0%
!!! CCAGTACTTTTTTTATAAGA+AGG - chr7_1:74664179-74664198 None:intergenic 25.0%
!! CCTTCTTATAAAAAAAGTAC+TGG + chr7_1:74664176-74664195 Msa1037920:intron 25.0%
! TCAAGATCAAGTACTATTTA+GGG - chr7_1:74664560-74664579 None:intergenic 25.0%
! ATCAAGATCAAGTACTATTT+AGG - chr7_1:74664561-74664580 None:intergenic 25.0%
! TCTTTATTATCAATCTCTCT+TGG + chr7_1:74664615-74664634 Msa1037920:three_prime_UTR 25.0%
CAATGTAGTGATCATATTGA+TGG + chr7_1:74661878-74661897 Msa1037920:CDS 30.0%
TGTTAATCACATTATTACGG+GGG - chr7_1:74662280-74662299 None:intergenic 30.0%
TTAAGTTCAGGGCTTAAATA+AGG - chr7_1:74662374-74662393 None:intergenic 30.0%
TATTTAAGCCCTGAACTTAA+CGG + chr7_1:74662374-74662393 Msa1037920:CDS 30.0%
ATTGGAATTCTCAATGATAC+CGG + chr7_1:74662437-74662456 Msa1037920:CDS 30.0%
TTCACTTACAAATTGGATTC+CGG - chr7_1:74662459-74662478 None:intergenic 30.0%
CCAGAATTTCACTTACAAAT+TGG - chr7_1:74662466-74662485 None:intergenic 30.0%
CCAATTTGTAAGTGAAATTC+TGG + chr7_1:74662463-74662482 Msa1037920:intron 30.0%
AATGTATGTTTGAATTGGAC+CGG - chr7_1:74662533-74662552 None:intergenic 30.0%
CATAATCCGGTAAATTGTAT+TGG - chr7_1:74662818-74662837 None:intergenic 30.0%
! CTGAGTATAAGAAGATTTTG+AGG + chr7_1:74662853-74662872 Msa1037920:CDS 30.0%
AAATAAATGGATCACATGCT+AGG - chr7_1:74662935-74662954 None:intergenic 30.0%
TAGCATGTGATCCATTTATT+TGG + chr7_1:74662934-74662953 Msa1037920:intron 30.0%
!!! CACAACATTTTTTCCATCAT+TGG + chr7_1:74663102-74663121 Msa1037920:intron 30.0%
TTGGATATTGATCTAATGGT+AGG + chr7_1:74663121-74663140 Msa1037920:intron 30.0%
GTAGGAAATATATGTGTGTT+TGG + chr7_1:74663139-74663158 Msa1037920:intron 30.0%
AGCAATTAATCTACAGACAA+GGG - chr7_1:74663240-74663259 None:intergenic 30.0%
AAGCAATTAATCTACAGACA+AGG - chr7_1:74663241-74663260 None:intergenic 30.0%
! CAATTTCATTGTTGAGTTGT+TGG - chr7_1:74664003-74664022 None:intergenic 30.0%
CAACAACTCAACAATGAAAT+TGG + chr7_1:74664001-74664020 Msa1037920:CDS 30.0%
!! AAAAAAAGTACTGGTTATGC+AGG + chr7_1:74664185-74664204 Msa1037920:intron 30.0%
! ATTGTTCAACAGATTTTGTC+AGG + chr7_1:74664353-74664372 Msa1037920:CDS 30.0%
GGTAAGGAAAAAGAAACTAT+TGG - chr7_1:74664690-74664709 None:intergenic 30.0%
GTAAAAAAAAAAGAGCGGTA+AGG - chr7_1:74664706-74664725 None:intergenic 30.0%
ATAAGACTGCAAAACCATAG+TGG - chr7_1:74661853-74661872 None:intergenic 35.0%
TGTAGTGATCATATTGATGG+TGG + chr7_1:74661881-74661900 Msa1037920:CDS 35.0%
!! ATCATATTGATGGTGGCATT+GGG + chr7_1:74661888-74661907 Msa1037920:CDS 35.0%
! AAGTTGTTTCAAAAGCACAG+TGG + chr7_1:74661911-74661930 Msa1037920:CDS 35.0%
! GGTGATTCTCTTGTTGATAA+TGG + chr7_1:74661957-74661976 Msa1037920:CDS 35.0%
GTTGGATAATCAATGCCATA+AGG - chr7_1:74662026-74662045 None:intergenic 35.0%
TTTGCATGGTTACTAAGTGA+GGG - chr7_1:74662245-74662264 None:intergenic 35.0%
ATTTAAGCCCTGAACTTAAC+GGG + chr7_1:74662375-74662394 Msa1037920:CDS 35.0%
! TGTGATTTTGTCAAACTCAC+CGG + chr7_1:74662511-74662530 Msa1037920:intron 35.0%
ATCACGCCAATACAATTTAC+CGG + chr7_1:74662809-74662828 Msa1037920:CDS 35.0%
!! TTGGTTGGTAGTATCAATCA+TGG + chr7_1:74663000-74663019 Msa1037920:intron 35.0%
GCAATTAATCTACAGACAAG+GGG - chr7_1:74663239-74663258 None:intergenic 35.0%
!! ACAAATAGAGAAGGGTACTT+GGG - chr7_1:74663370-74663389 None:intergenic 35.0%
! TTTGGTGCACAAATAGAGAA+GGG - chr7_1:74663378-74663397 None:intergenic 35.0%
!! TTTTGGTGCACAAATAGAGA+AGG - chr7_1:74663379-74663398 None:intergenic 35.0%
TCCACATTTCCCAATAAATG+AGG + chr7_1:74663428-74663447 Msa1037920:intron 35.0%
TATCAGAGACTATACGATCT+TGG + chr7_1:74663836-74663855 Msa1037920:intron 35.0%
AGTGTAGTTACCATATGCTT+GGG - chr7_1:74664086-74664105 None:intergenic 35.0%
TAGTGTAGTTACCATATGCT+TGG - chr7_1:74664087-74664106 None:intergenic 35.0%
TTAGGGCATAAATTAGAGAG+TGG - chr7_1:74664275-74664294 None:intergenic 35.0%
! AAAACAGTGCTGAGATTCAT+TGG - chr7_1:74664398-74664417 None:intergenic 35.0%
!!! CTATGTGTTTTTGGAATCCA+AGG - chr7_1:74664423-74664442 None:intergenic 35.0%
!!! CATAGCTTGCTATGTGTTTT+TGG - chr7_1:74664432-74664451 None:intergenic 35.0%
TGATCTTGATGTCTTAGTAG+TGG + chr7_1:74664571-74664590 Msa1037920:three_prime_UTR 35.0%
TAAATCCATGTCTGCCACTA+TGG + chr7_1:74661836-74661855 Msa1037920:exon 40.0%
!! GATCATATTGATGGTGGCAT+TGG + chr7_1:74661887-74661906 Msa1037920:CDS 40.0%
CAACGTGCTTTCTTTGTGTT+TGG + chr7_1:74661936-74661955 Msa1037920:CDS 40.0%
GGATAATCAATGCCATAAGG+AGG - chr7_1:74662023-74662042 None:intergenic 40.0%
AGTTAAGACGTGTGAGAAGT+AGG - chr7_1:74662222-74662241 None:intergenic 40.0%
CTTTGCATGGTTACTAAGTG+AGG - chr7_1:74662246-74662265 None:intergenic 40.0%
! ATTTTGCAGGTCAAGCACTT+GGG + chr7_1:74662333-74662352 Msa1037920:intron 40.0%
GGGCTTAAATAAGGCAAAGT+TGG - chr7_1:74662365-74662384 None:intergenic 40.0%
TTTAAGCCCTGAACTTAACG+GGG + chr7_1:74662376-74662395 Msa1037920:CDS 40.0%
ATCTTTCCCCGTTAAGTTCA+GGG - chr7_1:74662385-74662404 None:intergenic 40.0%
AATCTTTCCCCGTTAAGTTC+AGG - chr7_1:74662386-74662405 None:intergenic 40.0%
AATGCCAGCAGAAGCAAAAT+TGG - chr7_1:74662420-74662439 None:intergenic 40.0%
! AATTTTGCTTCTGCTGGCAT+TGG + chr7_1:74662419-74662438 Msa1037920:CDS 40.0%
!! ACTAAGCTCTGAGTTTGTTC+AGG - chr7_1:74662711-74662730 None:intergenic 40.0%
CAAACTCAGAGCTTAGTGAA+TGG + chr7_1:74662714-74662733 Msa1037920:CDS 40.0%
GCATTAGTACTCATCACTCT+TGG + chr7_1:74662738-74662757 Msa1037920:CDS 40.0%
TTAGTACTCATCACTCTTGG+AGG + chr7_1:74662741-74662760 Msa1037920:CDS 40.0%
!! CACAAATAGAGAAGGGTACT+TGG - chr7_1:74663371-74663390 None:intergenic 40.0%
GCCTCATTTATTGGGAAATG+TGG - chr7_1:74663432-74663451 None:intergenic 40.0%
TTACTTCCTTAACCAGTGTC+CGG - chr7_1:74663642-74663661 None:intergenic 40.0%
GGGATTATTGACGAAGTCAA+GGG - chr7_1:74664065-74664084 None:intergenic 40.0%
GTCAATAATCCCCAAGCATA+TGG + chr7_1:74664073-74664092 Msa1037920:CDS 40.0%
GTGTAGTTACCATATGCTTG+GGG - chr7_1:74664085-74664104 None:intergenic 40.0%
!! TGCAGGATTTGTTACATCAC+AGG + chr7_1:74664202-74664221 Msa1037920:intron 40.0%
ATGCATATTCGTCACGGTTA+GGG - chr7_1:74664292-74664311 None:intergenic 40.0%
AATGCATATTCGTCACGGTT+AGG - chr7_1:74664293-74664312 None:intergenic 40.0%
! ACCGTGACGAATATGCATTT+TGG + chr7_1:74664294-74664313 Msa1037920:CDS 40.0%
CCCAAAATGCATATTCGTCA+CGG - chr7_1:74664298-74664317 None:intergenic 40.0%
! CCGTGACGAATATGCATTTT+GGG + chr7_1:74664295-74664314 Msa1037920:CDS 40.0%
TGCATTCCATCCATCTGAAA+AGG + chr7_1:74664319-74664338 Msa1037920:CDS 40.0%
!!! TGTTAGCCTTTTCAGATGGA+TGG - chr7_1:74664328-74664347 None:intergenic 40.0%
!!! AAGCTGTTAGCCTTTTCAGA+TGG - chr7_1:74664332-74664351 None:intergenic 40.0%
! CTTGATGTCTTAGTAGTGGA+TGG + chr7_1:74664575-74664594 Msa1037920:three_prime_UTR 40.0%
!! TCTTAGTAGTGGATGGATGA+GGG + chr7_1:74664582-74664601 Msa1037920:three_prime_UTR 40.0%
! ACTTCAAGTTCAATGCCTAG+TGG - chr7_1:74664792-74664811 None:intergenic 40.0%
CAAAACCATAGTGGCAGACA+TGG - chr7_1:74661844-74661863 None:intergenic 45.0%
CCATTAGAGAAACGTCCAGT+GGG - chr7_1:74662056-74662075 None:intergenic 45.0%
! GATTTTGCAGGTCAAGCACT+TGG + chr7_1:74662332-74662351 Msa1037920:intron 45.0%
! TTTTGCAGGTCAAGCACTTG+GGG + chr7_1:74662334-74662353 Msa1037920:intron 45.0%
AACGGGGAAAGATTGCTTGT+TGG + chr7_1:74662392-74662411 Msa1037920:CDS 45.0%
GGGAAATGTTAATCAGTGCC+CGG + chr7_1:74663620-74663639 Msa1037920:intron 45.0%
TACTTCCTTAACCAGTGTCC+GGG - chr7_1:74663641-74663660 None:intergenic 45.0%
GGATTTCTTAACCAGTACCC+CGG + chr7_1:74663749-74663768 Msa1037920:intron 45.0%
GATTTCTTAACCAGTACCCC+GGG + chr7_1:74663750-74663769 Msa1037920:intron 45.0%
ATTTCTTAACCAGTACCCCG+GGG + chr7_1:74663751-74663770 Msa1037920:intron 45.0%
TATACGATCTTGGAGCACGT+AGG + chr7_1:74663846-74663865 Msa1037920:CDS 45.0%
ATACGATCTTGGAGCACGTA+GGG + chr7_1:74663847-74663866 Msa1037920:CDS 45.0%
TCTGCTGGAACACAACCAAT+TGG - chr7_1:74663893-74663912 None:intergenic 45.0%
TATTCATGGGAGCCAACACA+AGG + chr7_1:74664032-74664051 Msa1037920:CDS 45.0%
GGGGATTATTGACGAAGTCA+AGG - chr7_1:74664066-74664085 None:intergenic 45.0%
ACATCACAGGTAGCATGTTG+TGG + chr7_1:74664215-74664234 Msa1037920:CDS 45.0%
! AAGGACCCTACAATGGACTT+GGG + chr7_1:74664240-74664259 Msa1037920:CDS 45.0%
CATAGCCCAAGTCCATTGTA+GGG - chr7_1:74664248-74664267 None:intergenic 45.0%
!!! TCTCAGCACTGTTTTAGCCT+TGG + chr7_1:74664403-74664422 Msa1037920:CDS 45.0%
!! GTCTTAGTAGTGGATGGATG+AGG + chr7_1:74664581-74664600 Msa1037920:three_prime_UTR 45.0%
! CTAGTGGAAGTGCAAACTCT+TGG - chr7_1:74664776-74664795 None:intergenic 45.0%
CAAGAGTTTGCACTTCCACT+AGG + chr7_1:74664774-74664793 Msa1037920:three_prime_UTR 45.0%
CCCACTGGACGTTTCTCTAA+TGG + chr7_1:74662053-74662072 Msa1037920:CDS 50.0%
GCCATTAGAGAAACGTCCAG+TGG - chr7_1:74662057-74662076 None:intergenic 50.0%
! GGTGCCAATTTTGCTTCTGC+TGG + chr7_1:74662413-74662432 Msa1037920:CDS 50.0%
CAATACCAGCAGAGAGTGAG+TGG + chr7_1:74662675-74662694 Msa1037920:CDS 50.0%
CAGAGAGTGAGTGGTCTCAT+TGG + chr7_1:74662684-74662703 Msa1037920:CDS 50.0%
TGGCGTGATCTTGCAGAGAA+TGG - chr7_1:74662798-74662817 None:intergenic 50.0%
TTTCTTAACCAGTACCCCGG+GGG + chr7_1:74663752-74663771 Msa1037920:intron 50.0%
! AGGGTGATAGTGACAGGAAC+TGG + chr7_1:74663866-74663885 Msa1037920:CDS 50.0%
GTGACAGGAACTGGTCCAAT+TGG + chr7_1:74663875-74663894 Msa1037920:CDS 50.0%
TTAGCCCAACGAGGCACAAA+TGG + chr7_1:74663914-74663933 Msa1037920:CDS 50.0%
TAGCCCAACGAGGCACAAAT+GGG + chr7_1:74663915-74663934 Msa1037920:CDS 50.0%
CAGGTAGCATGTTGTGGTCA+AGG + chr7_1:74664221-74664240 Msa1037920:CDS 50.0%
TGTGGTCAAGGACCCTACAA+TGG + chr7_1:74664233-74664252 Msa1037920:CDS 50.0%
! CAAGGACCCTACAATGGACT+TGG + chr7_1:74664239-74664258 Msa1037920:CDS 50.0%
GCATAGCCCAAGTCCATTGT+AGG - chr7_1:74664249-74664268 None:intergenic 50.0%
CGAGCTGATGCTCCTCCTTA+TGG + chr7_1:74662008-74662027 Msa1037920:CDS 55.0%
TATCCAACTCGCAGACCCAC+TGG + chr7_1:74662038-74662057 Msa1037920:CDS 55.0%
TGAGACCACTCACTCTCTGC+TGG - chr7_1:74662683-74662702 None:intergenic 55.0%
GTTAATCAGTGCCCGGACAC+TGG + chr7_1:74663627-74663646 Msa1037920:intron 55.0%
! GCACGTAGGGTGATAGTGAC+AGG + chr7_1:74663860-74663879 Msa1037920:CDS 55.0%
CCTCGTTGGGCTAATTCTGC+TGG - chr7_1:74663908-74663927 None:intergenic 55.0%
CCAGCAGAATTAGCCCAACG+AGG + chr7_1:74663905-74663924 Msa1037920:CDS 55.0%
AGCCCAACGAGGCACAAATG+GGG + chr7_1:74663916-74663935 Msa1037920:CDS 55.0%
TCCCCCATTTGTGCCTCGTT+GGG - chr7_1:74663921-74663940 None:intergenic 55.0%
ATCCCCCATTTGTGCCTCGT+TGG - chr7_1:74663922-74663941 None:intergenic 55.0%
AAGGGCCATCTGCCTTGTGT+TGG - chr7_1:74664047-74664066 None:intergenic 55.0%
! CAGTGCCCGGACACTGGTTA+AGG + chr7_1:74663633-74663652 Msa1037920:intron 60.0%
TCCTGTTAACCAGTGCCCCC+GGG - chr7_1:74663770-74663789 None:intergenic 60.0%
GTCCTGTTAACCAGTGCCCC+CGG - chr7_1:74663771-74663790 None:intergenic 60.0%
GCCCAACGAGGCACAAATGG+GGG + chr7_1:74663917-74663936 Msa1037920:CDS 60.0%
GGGAGCCAACACAAGGCAGA+TGG + chr7_1:74664039-74664058 Msa1037920:CDS 60.0%
CGTCCAGTGGGTCTGCGAGT+TGG - chr7_1:74662044-74662063 None:intergenic 65.0%
CCTGTTAACCAGTGCCCCCG+GGG - chr7_1:74663769-74663788 None:intergenic 65.0%
! AACCAGTACCCCGGGGGCAC+TGG + chr7_1:74663758-74663777 Msa1037920:intron 70.0%
AACCAGTGCCCCCGGGGTAC+TGG - chr7_1:74663763-74663782 None:intergenic 70.0%
!! CCCCGGGGGCACTGGTTAAC+AGG + chr7_1:74663766-74663785 Msa1037920:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 74661800 74664819 74661800 ID=Msa1037920;Name=Msa1037920
chr7_1 mRNA 74661800 74664819 74661800 ID=Msa1037920-mRNA-1;Parent=Msa1037920;Name=Msa1037920-mRNA-1;_AED=0.36;_eAED=0.36;_QI=43|1|1|1|1|1|5|377|371
chr7_1 exon 74661800 74662098 74661800 ID=Msa1037920-mRNA-1:exon:18829;Parent=Msa1037920-mRNA-1
chr7_1 exon 74662342 74662469 74662342 ID=Msa1037920-mRNA-1:exon:18830;Parent=Msa1037920-mRNA-1
chr7_1 exon 74662633 74662875 74662633 ID=Msa1037920-mRNA-1:exon:18831;Parent=Msa1037920-mRNA-1
chr7_1 exon 74663842 74664094 74663842 ID=Msa1037920-mRNA-1:exon:18832;Parent=Msa1037920-mRNA-1
chr7_1 exon 74664207 74664819 74664207 ID=Msa1037920-mRNA-1:exon:18833;Parent=Msa1037920-mRNA-1
chr7_1 five_prime_UTR 74661800 74661842 74661800 ID=Msa1037920-mRNA-1:five_prime_utr;Parent=Msa1037920-mRNA-1
chr7_1 CDS 74661843 74662098 74661843 ID=Msa1037920-mRNA-1:cds;Parent=Msa1037920-mRNA-1
chr7_1 CDS 74662342 74662469 74662342 ID=Msa1037920-mRNA-1:cds;Parent=Msa1037920-mRNA-1
chr7_1 CDS 74662633 74662875 74662633 ID=Msa1037920-mRNA-1:cds;Parent=Msa1037920-mRNA-1
chr7_1 CDS 74663842 74664094 74663842 ID=Msa1037920-mRNA-1:cds;Parent=Msa1037920-mRNA-1
chr7_1 CDS 74664207 74664442 74664207 ID=Msa1037920-mRNA-1:cds;Parent=Msa1037920-mRNA-1
chr7_1 three_prime_UTR 74664443 74664819 74664443 ID=Msa1037920-mRNA-1:three_prime_utr;Parent=Msa1037920-mRNA-1
Gene Sequence

>Msa1037920

ATGTCTGCCACTATGGTTTTGCAGTCTTATTACATCAATGTAGTGATCATATTGATGGTGGCATTGGGAAGTTGTTTCAAAAGCACAGTGGCACAACGTGCTTTCTTTGTGTTTGGTGATTCTCTTGTTGATAATGGTAACAACAATTACTTAGCAACTACAGCTCGAGCTGATGCTCCTCCTTATGGCATTGATTATCCAACTCGCAGACCCACTGGACGTTTCTCTAATGGCTACAACATTCCTGACTTTATCAGTCAAGCACTTGGGGCAGAACCAACTTTGCCTTATTTAAGCCCTGAACTTAACGGGGAAAGATTGCTTGTTGGTGCCAATTTTGCTTCTGCTGGCATTGGAATTCTCAATGATACCGGAATCCAATTTATAAACATAATTAGAATATTTAGGCAATTGGAGTATTTTCAACAATACCAGCAGAGAGTGAGTGGTCTCATTGGACCTGAACAAACTCAGAGCTTAGTGAATGGAGCATTAGTACTCATCACTCTTGGAGGCAATGATTTTGTGAATAACTATTACTTGGTGCCATTCTCTGCAAGATCACGCCAATACAATTTACCGGATTATGTCAGATATATAATATCTGAGTATAAGAAGATTTTGAGGAGACTATACGATCTTGGAGCACGTAGGGTGATAGTGACAGGAACTGGTCCAATTGGTTGTGTTCCAGCAGAATTAGCCCAACGAGGCACAAATGGGGGATGCTCAGTTGAGCTACAACGTGCAGCAGCTTTGTTCAATCCACAACTTATTCAAATAATCCAACAACTCAACAATGAAATTGGTTCAAATGTATTCATGGGAGCCAACACAAGGCAGATGGCCCTTGACTTCGTCAATAATCCCCAAGCATATGGATTTGTTACATCACAGGTAGCATGTTGTGGTCAAGGACCCTACAATGGACTTGGGCTATGCACACCACTCTCTAATTTATGCCCTAACCGTGACGAATATGCATTTTGGGATGCATTCCATCCATCTGAAAAGGCTAACAGCTTGATTGTTCAACAGATTTTGTCAGGCACAACCGATTATATGTATCCAATGAATCTCAGCACTGTTTTAGCCTTGGATTCCAAAAACACATAG
Protein sequence

>Msa1037920

MSATMVLQSYYINVVIILMVALGSCFKSTVAQRAFFVFGDSLVDNGNNNYLATTARADAPPYGIDYPTRRPTGRFSNGYNIPDFISQALGAEPTLPYLSPELNGERLLVGANFASAGIGILNDTGIQFINIIRIFRQLEYFQQYQQRVSGLIGPEQTQSLVNGALVLITLGGNDFVNNYYLVPFSARSRQYNLPDYVRYIISEYKKILRRLYDLGARRVIVTGTGPIGCVPAELAQRGTNGGCSVELQRAAALFNPQLIQIIQQLNNEIGSNVFMGANTRQMALDFVNNPQAYGFVTSQVACCGQGPYNGLGLCTPLSNLCPNRDEYAFWDAFHPSEKANSLIVQQILSGTTDYMYPMNLSTVLALDSKNT*