Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344320 | KAG9438607.1 | 77.992 | 986 | 97 | 4 | 6 | 888 | 1 | 969 | 0.0 | 1530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344320 | sp|Q9BBS9|RPOB_LOTJA | 83.393 | 837 | 55 | 2 | 136 | 888 | 234 | 1070 | 0.0 | 1415 |
| Msa0344320 | sp|Q9BBS9|RPOB_LOTJA | 96.947 | 131 | 4 | 0 | 6 | 136 | 1 | 131 | 5.97e-73 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344320 | A0A2I6Q6G3 | 87.694 | 837 | 19 | 2 | 136 | 888 | 234 | 1070 | 0.0 | 1471 |
| Msa0344320 | A0A2I6Q6G3 | 97.710 | 131 | 3 | 0 | 6 | 136 | 1 | 131 | 8.53e-70 | 261 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139790 | Msa0344320 | 0.824710 | 6.966234e-54 | -8.615850e-47 |
| Msa0139810 | Msa0344320 | 0.806079 | 9.790290e-50 | -8.615850e-47 |
| Msa0139830 | Msa0344320 | 0.836533 | 8.852832e-57 | -8.615850e-47 |
| Msa0268590 | Msa0344320 | 0.839754 | 1.311527e-57 | -8.615850e-47 |
| Msa0268610 | Msa0344320 | 0.818529 | 1.869550e-52 | -8.615850e-47 |
| Msa0268820 | Msa0344320 | 0.822477 | 2.320342e-53 | -8.615850e-47 |
| Msa0269030 | Msa0344320 | 0.803218 | 3.872308e-49 | -8.615850e-47 |
| Msa0344320 | Msa0484000 | 0.855158 | 7.612074e-62 | -8.615850e-47 |
| Msa0344320 | Msa0582500 | 0.821711 | 3.491060e-53 | -8.615850e-47 |
| Msa0344320 | Msa0582630 | 0.800113 | 1.678647e-48 | -8.615850e-47 |
| Msa0344320 | Msa0582670 | 0.832483 | 9.214515e-56 | -8.615850e-47 |
| Msa0344320 | Msa0582680 | 0.855988 | 4.357653e-62 | -8.615850e-47 |
| Msa0344320 | Msa0582790 | 0.835413 | 1.702929e-56 | -8.615850e-47 |
| Msa0344320 | Msa0582800 | 0.818180 | 2.242772e-52 | -8.615850e-47 |
| Msa0344320 | Msa0931060 | 0.851111 | 1.097875e-60 | -8.615850e-47 |
| Msa0344320 | Msa0931120 | 0.841108 | 5.802589e-58 | -8.615850e-47 |
| Msa0344320 | Msa1086110 | 0.843519 | 1.333089e-58 | -8.615850e-47 |
| Msa0344320 | Msa1086130 | 0.831341 | 1.763894e-55 | -8.615850e-47 |
| Msa0344320 | Msa1086220 | 0.860207 | 2.425659e-63 | -8.615850e-47 |
| Msa0344320 | Msa1086240 | 0.824017 | 1.013733e-53 | -8.615850e-47 |
| Msa0344320 | Msa1086930 | 0.830798 | 2.396677e-55 | -8.615850e-47 |
| Msa0344320 | Msa1143110 | 0.832018 | 1.200613e-55 | -8.615850e-47 |
| Msa0344320 | Msa1143190 | 0.813232 | 2.840092e-51 | -8.615850e-47 |
| Msa0344320 | Msa1305100 | 0.819739 | 9.914106e-53 | -8.615850e-47 |
| Msa0344320 | Msa1305150 | 0.813666 | 2.280961e-51 | -8.615850e-47 |
| Msa0344320 | Msa1354380 | 0.802189 | 6.314375e-49 | -8.615850e-47 |
| Msa0344320 | Msa1354940 | 0.839171 | 1.859096e-57 | -8.615850e-47 |
| Msa0344320 | Msa1355110 | 0.819818 | 9.510775e-53 | -8.615850e-47 |
| Msa0344320 | Msa1380630 | 0.839893 | 1.206674e-57 | -8.615850e-47 |
| Msa0344320 | Msa1380670 | 0.802372 | 5.787922e-49 | -8.615850e-47 |
| Msa0344320 | Msa1380700 | 0.848002 | 8.089609e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344320 | MtrunA17_Chr4g0016641 | 89.367 | 837 | 5 | 2 | 136 | 888 | 239 | 1075 | 0.0 | 1502 |
| Msa0344320 | MtrunA17_Chr4g0016641 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 2.45e-79 | 278 |
| Msa0344320 | MtrunA17_CPg0493041 | 89.367 | 837 | 5 | 2 | 136 | 888 | 239 | 1075 | 0.0 | 1502 |
| Msa0344320 | MtrunA17_CPg0493041 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 2.45e-79 | 278 |
| Msa0344320 | MtrunA17_Chr4g0015531 | 77.586 | 348 | 4 | 3 | 198 | 525 | 1 | 294 | 1.05e-179 | 520 |
| Msa0344320 | MtrunA17_Chr1g0159041 | 69.289 | 394 | 41 | 3 | 328 | 713 | 1 | 322 | 2.60e-179 | 520 |
| Msa0344320 | MtrunA17_Chr4g0015541 | 87.619 | 210 | 2 | 1 | 679 | 888 | 1 | 186 | 1.13e-119 | 365 |
| Msa0344320 | MtrunA17_Chr1g0159051 | 94.000 | 100 | 6 | 0 | 171 | 270 | 12 | 111 | 8.26e-57 | 191 |
| Msa0344320 | MtrunA17_Chr7g0247561 | 96.154 | 78 | 3 | 0 | 482 | 559 | 1 | 78 | 1.71e-47 | 163 |
| Msa0344320 | MtrunA17_Chr8g0345421 | 27.696 | 408 | 235 | 7 | 510 | 869 | 728 | 1123 | 1.08e-35 | 146 |
| Msa0344320 | MtrunA17_Chr1g0155911 | 26.836 | 354 | 210 | 6 | 510 | 829 | 782 | 1120 | 4.11e-35 | 144 |
| Msa0344320 | MtrunA17_Chr3g0136911 | 25.314 | 478 | 287 | 14 | 444 | 871 | 724 | 1181 | 2.00e-28 | 123 |
| Msa0344320 | MtrunA17_Chr8g0375171 | 25.263 | 475 | 291 | 13 | 444 | 871 | 722 | 1179 | 5.50e-28 | 122 |
| Msa0344320 | MtrunA17_Chr4g0069391 | 26.005 | 373 | 232 | 8 | 510 | 854 | 786 | 1142 | 4.69e-27 | 119 |
| Msa0344320 | MtrunA17_Chr3g0142431 | 27.381 | 252 | 146 | 6 | 642 | 871 | 2 | 238 | 7.29e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344320 | ATCG00190.1 | 81.049 | 839 | 73 | 3 | 136 | 888 | 234 | 1072 | 0.0 | 1380 |
| Msa0344320 | ATCG00190.1 | 84.733 | 131 | 20 | 0 | 6 | 136 | 1 | 131 | 5.58e-61 | 225 |
| Msa0344320 | AT4G21710.1 | 26.406 | 409 | 237 | 8 | 510 | 869 | 779 | 1172 | 4.41e-36 | 148 |
| Msa0344320 | AT5G45140.2 | 26.650 | 409 | 237 | 8 | 510 | 867 | 754 | 1150 | 2.51e-33 | 139 |
| Msa0344320 | AT5G45140.1 | 26.650 | 409 | 237 | 8 | 510 | 867 | 754 | 1150 | 2.51e-33 | 139 |
| Msa0344320 | AT3G23780.1 | 24.939 | 413 | 241 | 9 | 514 | 872 | 769 | 1166 | 7.31e-26 | 115 |
| Msa0344320 | AT3G23780.2 | 24.939 | 413 | 241 | 9 | 514 | 872 | 769 | 1166 | 7.31e-26 | 115 |
| Msa0344320 | AT3G18090.1 | 24.877 | 406 | 251 | 8 | 514 | 872 | 651 | 1049 | 4.09e-25 | 112 |
| Msa0344320 | AT1G29940.1 | 25.706 | 354 | 208 | 11 | 514 | 830 | 756 | 1091 | 6.96e-24 | 108 |
| Msa0344320 | AT3G18090.2 | 25.888 | 197 | 125 | 2 | 514 | 689 | 651 | 847 | 1.34e-13 | 75.5 |
| Msa0344320 | AT3G18090.3 | 25.888 | 197 | 125 | 2 | 514 | 689 | 651 | 847 | 1.48e-13 | 75.5 |
Find 198 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTAAATTTCGGAGTAAA+TGG | 0.137285 | 3_1:+2765980 | None:intergenic |
| CATTTGATTGGAATGAAATT+TGG | 0.153768 | 3_1:-2767248 | Msa0344320:CDS |
| CTTGTTTCGCCCTTCCTTTA+AGG | 0.204769 | 3_1:+2765204 | None:intergenic |
| ATATATCCGCGGGATTAATT+TGG | 0.209384 | 3_1:-2767878 | Msa0344320:CDS |
| GTTACACAACAACCCCTTAA+AGG | 0.212213 | 3_1:-2765218 | Msa0344320:CDS |
| TTTCAACAAAGATGTGAATT+AGG | 0.219138 | 3_1:-2767368 | Msa0344320:CDS |
| TGGATTCGATGTTTGTTTAC+TGG | 0.222331 | 3_1:+2765403 | None:intergenic |
| CTGGGAACTTCTATAGTAAA+TGG | 0.231551 | 3_1:-2767792 | Msa0344320:CDS |
| ACATAAAGATTCAGGAAATA+TGG | 0.234879 | 3_1:+2767412 | None:intergenic |
| GAACGTTGATATCTAATTAA+TGG | 0.244746 | 3_1:+2766303 | None:intergenic |
| TTTGAACAGCCTGTTATAAT+AGG | 0.245428 | 3_1:-2765317 | Msa0344320:CDS |
| TGAATTAATTTCAAGATATA+AGG | 0.248171 | 3_1:+2765290 | None:intergenic |
| GGAATCAATGTAGGACTTAT+TGG | 0.263649 | 3_1:-2766837 | Msa0344320:CDS |
| ACGAGCTATACTTGGGATTC+AGG | 0.269809 | 3_1:-2765845 | Msa0344320:intron |
| AGCACTGAATCGAGGTATTC+AGG | 0.270037 | 3_1:-2766667 | Msa0344320:CDS |
| GATCTATTACAAGATCAATT+TGG | 0.270369 | 3_1:-2767167 | Msa0344320:CDS |
| GATTCATAAGTGGTTGTTAA+TGG | 0.270524 | 3_1:+2767044 | None:intergenic |
| GGTCTTCCATCTTGCAAATA+AGG | 0.291965 | 3_1:+2765605 | None:intergenic |
| TTGTTTCGCCCTTCCTTTAA+GGG | 0.292882 | 3_1:+2765205 | None:intergenic |
| ATAATTCGAGGAACTATATC+TGG | 0.305120 | 3_1:-2767119 | Msa0344320:CDS |
| GCATCATTATGCTCGATAAA+AGG | 0.305503 | 3_1:+2766528 | None:intergenic |
| ATTCGTGAGGGTACCCCTAA+TGG | 0.306675 | 3_1:+2765563 | None:intergenic |
| TCAAATATTCCGCTCTTTCC+CGG | 0.314064 | 3_1:+2765359 | None:intergenic |
| AATTCCGTACATAAAGATTC+AGG | 0.323867 | 3_1:+2767404 | None:intergenic |
| CGCCAAGTGGCCTTAGATTC+AGG | 0.326928 | 3_1:-2766417 | Msa0344320:CDS |
| TGTTGGCGGTGAACTCGCTT+TGG | 0.329325 | 3_1:-2766190 | Msa0344320:CDS |
| CGCATTTACCTTTATGAACC+TGG | 0.329782 | 3_1:+2766250 | None:intergenic |
| AACGATCTTTCCTGCGTGTT+CGG | 0.330632 | 3_1:+2766380 | None:intergenic |
| GGAATATTTGATGGAAGAAC+AGG | 0.334674 | 3_1:-2765347 | Msa0344320:CDS |
| AATGAATGTAGGACAGATAT+TGG | 0.340082 | 3_1:-2765543 | Msa0344320:CDS |
| AAACTTCCTTCCTTTGAATC+TGG | 0.340714 | 3_1:+2764934 | None:intergenic |
| TCTGGAGCATCCACAGGTTT+AGG | 0.340865 | 3_1:+2765035 | None:intergenic |
| TCACGCAAGGATTGGTCCTT+GGG | 0.341088 | 3_1:-2766802 | Msa0344320:CDS |
| ACGAGCAATCGAAAAGATTC+TGG | 0.342745 | 3_1:+2765017 | None:intergenic |
| ATATGGTCTTCAACCCATTA+GGG | 0.343228 | 3_1:-2765577 | Msa0344320:CDS |
| GTCAAGCAGTTCCTCTTTCT+CGG | 0.344262 | 3_1:-2766473 | Msa0344320:CDS |
| CTGGGATCTTGGGTAGAAAC+AGG | 0.344385 | 3_1:-2765940 | Msa0344320:CDS |
| TCAGTCTTCGGTTCATATTT+CGG | 0.349155 | 3_1:+2767333 | None:intergenic |
| AAATTGTATTTGATTTAATC+CGG | 0.349804 | 3_1:+2768082 | None:intergenic |
| GTACTCGGAACTACGATTAT+TGG | 0.356639 | 3_1:-2765068 | Msa0344320:CDS |
| CGGTCCGAAAAGTGCATTGT+TGG | 0.359288 | 3_1:-2766453 | Msa0344320:CDS |
| AGCGGGAACTCCTGAATCTA+AGG | 0.364603 | 3_1:+2766407 | None:intergenic |
| CGTTCGAGAACTACGATCTT+TGG | 0.364953 | 3_1:-2764997 | Msa0344320:CDS |
| TATGCTCGATAAAAGGAATC+AGG | 0.367331 | 3_1:+2766535 | None:intergenic |
| TCCGCTCTTTCCCGGATACT+CGG | 0.379405 | 3_1:+2765367 | None:intergenic |
| GAATGTTCACTCGGATTAGC+TGG | 0.386652 | 3_1:-2765521 | Msa0344320:CDS |
| TGGGGAAATTGAAAATGCTT+GGG | 0.386996 | 3_1:-2768133 | Msa0344320:CDS |
| ACAGCTGCGGATCATTTGAT+TGG | 0.389432 | 3_1:-2767260 | Msa0344320:CDS |
| GATATTTGAACCCGAGTATC+CGG | 0.389575 | 3_1:-2765378 | Msa0344320:CDS |
| AATTGAAAATGCTTGGGGTT+GGG | 0.394420 | 3_1:-2768127 | Msa0344320:CDS |
| GATATGGTCTTCAACCCATT+AGG | 0.395616 | 3_1:-2765578 | Msa0344320:CDS |
| GTTTGGGCGCTCGAGGGGTT+CGG | 0.396040 | 3_1:-2765155 | Msa0344320:CDS |
| GTTGGCGGTGAACTCGCTTT+GGG | 0.396452 | 3_1:-2766189 | Msa0344320:CDS |
| AGATGGAAGACCCGTTGATA+TGG | 0.398344 | 3_1:-2765594 | Msa0344320:CDS |
| ATTCCTTCCGAGGTGTCAAT+TGG | 0.403361 | 3_1:+2766855 | None:intergenic |
| AGATTATTACGAGCTATACT+TGG | 0.409704 | 3_1:-2765853 | Msa0344320:CDS |
| TGTAGGACTTATTGGATCCT+TGG | 0.411030 | 3_1:-2766829 | Msa0344320:CDS |
| TCTAACTATTGCATGGGAAC+AGG | 0.414074 | 3_1:-2766607 | Msa0344320:CDS |
| GAAAAGTGCATTGTTGGAAC+TGG | 0.419529 | 3_1:-2766447 | Msa0344320:CDS |
| TTCACGCAAGGATTGGTCCT+TGG | 0.420745 | 3_1:-2766803 | Msa0344320:CDS |
| CATTCCTCTAATGAATTCCC+TGG | 0.423604 | 3_1:-2767811 | Msa0344320:CDS |
| ATGGGGAAATTGAAAATGCT+TGG | 0.425882 | 3_1:-2768134 | Msa0344320:CDS |
| GAATTGTGATTCTGGGATCT+TGG | 0.426630 | 3_1:-2765951 | Msa0344320:CDS |
| ATGGAGGTTTGGGCGCTCGA+GGG | 0.426714 | 3_1:-2765161 | Msa0344320:CDS |
| GTCTAAATTTCGGAGTAAAT+GGG | 0.428736 | 3_1:+2765981 | None:intergenic |
| GCCGGGAGACATGGAAATAA+AGG | 0.429982 | 3_1:-2765662 | Msa0344320:CDS |
| GTATATCAATGTTCAGTCTT+CGG | 0.430453 | 3_1:+2767321 | None:intergenic |
| AAGTAGAGATGAATACTATA+TGG | 0.431841 | 3_1:-2766709 | Msa0344320:CDS |
| TTCGTGAGGGTACCCCTAAT+GGG | 0.434009 | 3_1:+2765564 | None:intergenic |
| ATTATAACAGGCTGTTCAAA+AGG | 0.436541 | 3_1:+2765320 | None:intergenic |
| AGGACAACGGGTAGGCGAAA+TGG | 0.436703 | 3_1:-2765180 | Msa0344320:CDS |
| ATGCTTGGGGTTGGGAATGA+AGG | 0.438598 | 3_1:-2768119 | Msa0344320:CDS |
| GAGGATTCTTTCGCCATTTG+AGG | 0.441108 | 3_1:+2765892 | None:intergenic |
| CATAAAGATTCAGGAAATAT+GGG | 0.442441 | 3_1:+2767413 | None:intergenic |
| AATTGAATTTCAGTTATTTG+TGG | 0.443334 | 3_1:-2767979 | Msa0344320:CDS |
| GATATCCATCCTAGTCACTA+TGG | 0.449002 | 3_1:-2766888 | Msa0344320:CDS |
| ACCTTTATTTCCATGTCTCC+CGG | 0.449391 | 3_1:+2765661 | None:intergenic |
| GTTCCCAGGGAATTCATTAG+AGG | 0.450312 | 3_1:+2767807 | None:intergenic |
| AAATTGAAAATGCTTGGGGT+TGG | 0.457271 | 3_1:-2768128 | Msa0344320:CDS |
| TTAAATCAAATACAATTTGA+AGG | 0.460401 | 3_1:-2768077 | Msa0344320:CDS |
| AATGGAGGTTTGGGCGCTCG+AGG | 0.461267 | 3_1:-2765162 | Msa0344320:CDS |
| GCTCGTAATAATCTATCTTC+CGG | 0.462719 | 3_1:+2765862 | None:intergenic |
| GGTAGGCGAAATGGAGGTTT+GGG | 0.465784 | 3_1:-2765171 | Msa0344320:CDS |
| GGGTAGGCGAAATGGAGGTT+TGG | 0.465926 | 3_1:-2765172 | Msa0344320:CDS |
| GGGTAAATTAACGCCTCAAA+TGG | 0.467677 | 3_1:-2765905 | Msa0344320:CDS |
| GGAAAGAGCGGAATATTTGA+TGG | 0.469164 | 3_1:-2765356 | Msa0344320:CDS |
| ATTTGTGGAAACATATCAAT+TGG | 0.470517 | 3_1:-2767964 | Msa0344320:CDS |
| ATTACAAGATCAATTTGGAT+TGG | 0.471878 | 3_1:-2767162 | Msa0344320:CDS |
| CATTTACTATAGAAGTTCCC+AGG | 0.473812 | 3_1:+2767793 | None:intergenic |
| CCGCTCTTTCCCGGATACTC+GGG | 0.478316 | 3_1:+2765368 | None:intergenic |
| AAGAATTTCTAACTATTGCA+TGG | 0.481440 | 3_1:-2766614 | Msa0344320:CDS |
| GGCGAAACAAGGAGGACAAC+GGG | 0.481846 | 3_1:-2765192 | Msa0344320:CDS |
| CCTGCGTGTTCGGCTATAGC+GGG | 0.483049 | 3_1:+2766390 | None:intergenic |
| CGTTTAGAAAATATAATTCG+AGG | 0.485783 | 3_1:-2767131 | Msa0344320:CDS |
| AATTGTGATTCTGGGATCTT+GGG | 0.486220 | 3_1:-2765950 | Msa0344320:CDS |
| AGATGTGAATTAGGAGGGAT+TGG | 0.486416 | 3_1:-2767359 | Msa0344320:CDS |
| ATTGGAATGAAATTTGGAAT+GGG | 0.491267 | 3_1:-2767242 | Msa0344320:CDS |
| TGTTCATATCTCTCATCAAA+AGG | 0.491842 | 3_1:+2765467 | None:intergenic |
| CAACAAAGATGTGAATTAGG+AGG | 0.492034 | 3_1:-2767365 | Msa0344320:CDS |
| ATTTCCTGAATCTTTATGTA+CGG | 0.495836 | 3_1:-2767408 | Msa0344320:CDS |
| TTGGCAATTCACGCAAGGAT+TGG | 0.498707 | 3_1:-2766810 | Msa0344320:CDS |
| GATTGGAATGAAATTTGGAA+TGG | 0.498930 | 3_1:-2767243 | Msa0344320:CDS |
| CAAGTTGATGATAAAATACA+TGG | 0.502523 | 3_1:-2765266 | Msa0344320:CDS |
| GTGCATTGTTGGAACTGGAT+TGG | 0.504759 | 3_1:-2766442 | Msa0344320:CDS |
| TGGAGGTTTGGGCGCTCGAG+GGG | 0.505858 | 3_1:-2765160 | Msa0344320:CDS |
| CTCCTGAATCTAAGGCCACT+TGG | 0.506387 | 3_1:+2766415 | None:intergenic |
| TGTACTCATTAGTGAACGTC+TGG | 0.512500 | 3_1:-2766112 | Msa0344320:CDS |
| AACAAAGATGTGAATTAGGA+GGG | 0.512939 | 3_1:-2767364 | Msa0344320:CDS |
| AGAACTACGATCTTTGGCTC+TGG | 0.513829 | 3_1:-2764991 | Msa0344320:CDS |
| GATATGCCTTATTTGCAAGA+TGG | 0.518600 | 3_1:-2765611 | Msa0344320:CDS |
| TATTAGTAGCTTATATGCCA+TGG | 0.519177 | 3_1:-2766158 | Msa0344320:CDS |
| GTAAACAAACATCGAATCCA+TGG | 0.519391 | 3_1:-2765400 | Msa0344320:CDS |
| CAGAAACGTGAAATTAAAGT+AGG | 0.520965 | 3_1:-2765695 | Msa0344320:CDS |
| ATATAGTATTCATCTCTACT+TGG | 0.523407 | 3_1:+2766711 | None:intergenic |
| AAAGTAGGTGATAAAGTGGC+CGG | 0.529519 | 3_1:-2765680 | Msa0344320:CDS |
| GCATTTACCTTTATGAACCT+GGG | 0.530323 | 3_1:+2766251 | None:intergenic |
| AAAGATTCTGGAGCATCCAC+AGG | 0.531781 | 3_1:+2765029 | None:intergenic |
| GCAGATGGTGCTGCTACTGT+TGG | 0.531919 | 3_1:-2766207 | Msa0344320:CDS |
| TAAATCAAATACAATTTGAA+GGG | 0.532005 | 3_1:-2768076 | Msa0344320:CDS |
| GATAAAGTGGCCGGGAGACA+TGG | 0.532845 | 3_1:-2765671 | Msa0344320:CDS |
| AGAAAGACTTCCAGATTCAA+AGG | 0.533242 | 3_1:-2764944 | Msa0344320:CDS |
| GGGTTGAAGACCATATCAAC+GGG | 0.535156 | 3_1:+2765584 | None:intergenic |
| CACAACAACCCCTTAAAGGA+AGG | 0.535519 | 3_1:-2765214 | Msa0344320:CDS |
| AATTCTTGACGGTATCGAGC+TGG | 0.536702 | 3_1:+2766630 | None:intergenic |
| CAATAGTTAGAAATTCTTGA+CGG | 0.539101 | 3_1:+2766619 | None:intergenic |
| TAATCTATCTTCCGGAGCAT+AGG | 0.540322 | 3_1:+2765870 | None:intergenic |
| TCTATCTTCCGGAGCATAGG+AGG | 0.540370 | 3_1:+2765873 | None:intergenic |
| TACTCGGGTTCAAATATCCA+TGG | 0.546454 | 3_1:+2765383 | None:intergenic |
| TCCTGCGTGTTCGGCTATAG+CGG | 0.549505 | 3_1:+2766389 | None:intergenic |
| AGAATTTCTAACTATTGCAT+GGG | 0.549733 | 3_1:-2766613 | Msa0344320:CDS |
| AATTGTATTTGATTTAATCC+GGG | 0.549785 | 3_1:+2768083 | None:intergenic |
| CAGATATTGGAATGTTCACT+CGG | 0.551609 | 3_1:-2765530 | Msa0344320:CDS |
| TAGTGATTCTTTCAGGACCA+TGG | 0.551937 | 3_1:+2766025 | None:intergenic |
| GAATACTATATGGTAGCGAC+GGG | 0.553560 | 3_1:-2766699 | Msa0344320:CDS |
| GATGGTGCTGCTACTGTTGG+CGG | 0.553778 | 3_1:-2766204 | Msa0344320:CDS |
| GATTATTACGAGCTATACTT+GGG | 0.558504 | 3_1:-2765852 | Msa0344320:CDS |
| CTCGGAACTACGATTATTGG+AGG | 0.559077 | 3_1:-2765065 | Msa0344320:CDS |
| ATCTTGTAATAGATCTGCTA+CGG | 0.559735 | 3_1:+2767175 | None:intergenic |
| TCTGAATTATATATATCCGC+GGG | 0.562320 | 3_1:-2767888 | Msa0344320:CDS |
| AGACTTCCAGATTCAAAGGA+AGG | 0.563377 | 3_1:-2764940 | Msa0344320:CDS |
| GTCACTAAATTCTGAGGAGT+AGG | 0.563396 | 3_1:+2767074 | None:intergenic |
| GGAAGTCTTTCTCAGATACA+AGG | 0.565963 | 3_1:+2764955 | None:intergenic |
| AACAAGTGCATAATGTCCAC+TGG | 0.566338 | 3_1:+2765238 | None:intergenic |
| TGTTTCGCCCTTCCTTTAAG+GGG | 0.567625 | 3_1:+2765206 | None:intergenic |
| AATGTTCACTCGGATTAGCT+GGG | 0.569063 | 3_1:-2765520 | Msa0344320:CDS |
| AATCAAATATTGCAAAGCCC+TGG | 0.569397 | 3_1:-2767750 | Msa0344320:intron |
| GAAAGAATCCTCCTATGCTC+CGG | 0.570879 | 3_1:-2765881 | Msa0344320:CDS |
| TGAATACTATATGGTAGCGA+CGG | 0.571395 | 3_1:-2766700 | Msa0344320:CDS |
| TCCTACATTGATTCCTTCCG+AGG | 0.572209 | 3_1:+2766845 | None:intergenic |
| CAAATGCGTCCATAGTGACT+AGG | 0.573493 | 3_1:+2766879 | None:intergenic |
| CTCTGAATTATATATATCCG+CGG | 0.577667 | 3_1:-2767889 | Msa0344320:CDS |
| CTTAAAGGAAGGGCGAAACA+AGG | 0.579473 | 3_1:-2765203 | Msa0344320:CDS |
| AATTAAAGTAGGTGATAAAG+TGG | 0.581077 | 3_1:-2765684 | Msa0344320:CDS |
| ATATTTGAACCCGAGTATCC+GGG | 0.581389 | 3_1:-2765377 | Msa0344320:CDS |
| CAGACTCATGTGACAAGCCA+TGG | 0.581560 | 3_1:-2766042 | Msa0344320:CDS |
| CTGTCCTACATTCATTCGTG+AGG | 0.583153 | 3_1:+2765550 | None:intergenic |
| AGTAAATGGGCTTCTAGATG+TGG | 0.584284 | 3_1:+2765994 | None:intergenic |
| CCCGAGTATCCGGGAAAGAG+CGG | 0.584519 | 3_1:-2765368 | Msa0344320:CDS |
| TGTCCAATTGACACCTCGGA+AGG | 0.584582 | 3_1:-2766858 | Msa0344320:CDS |
| CGCGGATATATATAATTCAG+AGG | 0.586801 | 3_1:+2767890 | None:intergenic |
| ATTTACTATAGAAGTTCCCA+GGG | 0.587463 | 3_1:+2767794 | None:intergenic |
| ATGCTCGATAAAAGGAATCA+GGG | 0.587469 | 3_1:+2766536 | None:intergenic |
| TGGGATCTTGGGTAGAAACA+GGG | 0.592045 | 3_1:-2765939 | Msa0344320:CDS |
| TCAGAATTGTAACCTTCCCA+TGG | 0.596416 | 3_1:+2766141 | None:intergenic |
| ATTAGTAGCTTATATGCCAT+GGG | 0.596673 | 3_1:-2766157 | Msa0344320:CDS |
| AAGTAGGTGATAAAGTGGCC+GGG | 0.597954 | 3_1:-2765679 | Msa0344320:CDS |
| GGGCGAAACAAGGAGGACAA+CGG | 0.598993 | 3_1:-2765193 | Msa0344320:CDS |
| ATTCCTCTAATGAATTCCCT+GGG | 0.606971 | 3_1:-2767810 | Msa0344320:CDS |
| CACGCAAGGATTGGTCCTTG+GGG | 0.608804 | 3_1:-2766801 | Msa0344320:CDS |
| GTAGCTTATATGCCATGGGA+AGG | 0.611195 | 3_1:-2766153 | Msa0344320:CDS |
| TGTCCTACATTCATTCGTGA+GGG | 0.611498 | 3_1:+2765551 | None:intergenic |
| GATCCTTGGCAATTCACGCA+AGG | 0.614349 | 3_1:-2766815 | Msa0344320:CDS |
| AAAATACATGGACGTTCCAG+TGG | 0.614997 | 3_1:-2765254 | Msa0344320:CDS |
| AACTGGATTGGAACGCCAAG+TGG | 0.615266 | 3_1:-2766430 | Msa0344320:CDS |
| GTTGAAGTCACTAAATTCTG+AGG | 0.617323 | 3_1:+2767068 | None:intergenic |
| TGATGAGAGATATGAACAGG+AGG | 0.620223 | 3_1:-2765462 | Msa0344320:CDS |
| AATCCTTGCGTGAATTGCCA+AGG | 0.621341 | 3_1:+2766812 | None:intergenic |
| CATTTGTCCAATTGACACCT+CGG | 0.622149 | 3_1:-2766862 | Msa0344320:CDS |
| GTACCCTCACGAATGAATGT+AGG | 0.622385 | 3_1:-2765554 | Msa0344320:CDS |
| TGGGTTGAAGACCATATCAA+CGG | 0.622611 | 3_1:+2765583 | None:intergenic |
| TGCGTCCATAGTGACTAGGA+TGG | 0.626242 | 3_1:+2766883 | None:intergenic |
| AAACAAGGAGGACAACGGGT+AGG | 0.626804 | 3_1:-2765188 | Msa0344320:CDS |
| GAAGGAATGTCTACACTACC+CGG | 0.627870 | 3_1:-2768101 | Msa0344320:CDS |
| ACGCAAGGATTGGTCCTTGG+GGG | 0.629421 | 3_1:-2766800 | Msa0344320:CDS |
| GGGATCTTGGGTAGAAACAG+GGG | 0.635116 | 3_1:-2765938 | Msa0344320:CDS |
| ACAACAACCCCTTAAAGGAA+GGG | 0.636584 | 3_1:-2765213 | Msa0344320:CDS |
| ACCTCGGAAGGAATCAATGT+AGG | 0.642821 | 3_1:-2766846 | Msa0344320:CDS |
| GGGGAAATTGAAAATGCTTG+GGG | 0.643696 | 3_1:-2768132 | Msa0344320:CDS |
| AGGAACAATACCTAAACCTG+TGG | 0.656849 | 3_1:-2765045 | Msa0344320:CDS |
| AAAGCTCGTCAAGAAGTACT+CGG | 0.659322 | 3_1:-2765083 | Msa0344320:CDS |
| ACAACGGGTAGGCGAAATGG+AGG | 0.659407 | 3_1:-2765177 | Msa0344320:CDS |
| TATGGTCTTCAACCCATTAG+GGG | 0.670295 | 3_1:-2765576 | Msa0344320:CDS |
| CCCGCTATAGCCGAACACGC+AGG | 0.684746 | 3_1:-2766390 | Msa0344320:CDS |
| GAATATTTGATGGAAGAACA+GGG | 0.689025 | 3_1:-2765346 | Msa0344320:CDS |
| GCGAGATATATTGACAGCTG+CGG | 0.702124 | 3_1:-2767273 | Msa0344320:CDS |
| GCAGCTGTCAATATATCTCG+CGG | 0.702925 | 3_1:+2767275 | None:intergenic |
| AAAGGAAGGGCGAAACAAGG+AGG | 0.708508 | 3_1:-2765200 | Msa0344320:CDS |
| ACTGAATCGAGGTATTCAGG+AGG | 0.734798 | 3_1:-2766664 | Msa0344320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGTATTTGATTTAATC+CGG | + | chr3_1:2764987-2765006 | None:intergenic | 15.0% |
| !! | TTAAATCAAATACAATTTGA+AGG | - | chr3_1:2764989-2765008 | Msa0344320:CDS | 15.0% |
| !! | TAAATCAAATACAATTTGAA+GGG | - | chr3_1:2764990-2765009 | Msa0344320:CDS | 15.0% |
| !!! | CAATAAAAATAATTTGTTCT+TGG | + | chr3_1:2765231-2765250 | None:intergenic | 15.0% |
| !!! | CAAGAACAAATTATTTTTAT+TGG | - | chr3_1:2765229-2765248 | Msa0344320:CDS | 15.0% |
| !! | TGAATTAATTTCAAGATATA+AGG | + | chr3_1:2767779-2767798 | None:intergenic | 15.0% |
| !!! | AATTGTATTTGATTTAATCC+GGG | + | chr3_1:2764986-2765005 | None:intergenic | 20.0% |
| !! | AATTGAATTTCAGTTATTTG+TGG | - | chr3_1:2765087-2765106 | Msa0344320:CDS | 20.0% |
| !!! | ATTAATTTGGAAAAACAGTA+GGG | - | chr3_1:2765201-2765220 | Msa0344320:CDS | 20.0% |
| !! | TAACAAAAATGTATTGTTCT+CGG | + | chr3_1:2765771-2765790 | None:intergenic | 20.0% |
| !!! | AAGATCATTTTATTTGGAAA+TGG | - | chr3_1:2766724-2766743 | Msa0344320:CDS | 20.0% |
| !!! | AGATCATTTTATTTGGAAAT+GGG | - | chr3_1:2766725-2766744 | Msa0344320:CDS | 20.0% |
| !!! | ATTTTATTAGTGATTCTTTC+AGG | + | chr3_1:2767051-2767070 | None:intergenic | 20.0% |
| !!! | TTCCATTTTTGTCTAAATTT+CGG | + | chr3_1:2767098-2767117 | None:intergenic | 20.0% |
| !! | ATATATATATGAATCGTTTC+TGG | + | chr3_1:2767347-2767366 | None:intergenic | 20.0% |
| ! | GTTTCCAAAAATTGAAGATA+CGG | - | chr3_1:2765057-2765076 | Msa0344320:CDS | 25.0% |
| ! | ATTTGTGGAAACATATCAAT+TGG | - | chr3_1:2765102-2765121 | Msa0344320:CDS | 25.0% |
| !! | GATTAATTTGGAAAAACAGT+AGG | - | chr3_1:2765200-2765219 | Msa0344320:CDS | 25.0% |
| ! | TAGAAATTGATAGAAAAGCA+AGG | - | chr3_1:2765424-2765443 | Msa0344320:CDS | 25.0% |
| ! | AGGAAAGACATAAAAATTTC+GGG | + | chr3_1:2765549-2765568 | None:intergenic | 25.0% |
| ! | GAGGAAAGACATAAAAATTT+CGG | + | chr3_1:2765550-2765569 | None:intergenic | 25.0% |
| ! | TGAAAAGGAGGAAAAAAAAT+AGG | - | chr3_1:2765572-2765591 | Msa0344320:CDS | 25.0% |
| ! | GAAAAGGAGGAAAAAAAATA+GGG | - | chr3_1:2765573-2765592 | Msa0344320:CDS | 25.0% |
| ! | CATAAAGATTCAGGAAATAT+GGG | + | chr3_1:2765656-2765675 | None:intergenic | 25.0% |
| ! | ACATAAAGATTCAGGAAATA+TGG | + | chr3_1:2765657-2765676 | None:intergenic | 25.0% |
| ! | ATTTCCTGAATCTTTATGTA+CGG | - | chr3_1:2765658-2765677 | Msa0344320:CDS | 25.0% |
| ! | TTTCAACAAAGATGTGAATT+AGG | - | chr3_1:2765698-2765717 | Msa0344320:intron | 25.0% |
| ! | AACAAAAATGTATTGTTCTC+GGG | + | chr3_1:2765770-2765789 | None:intergenic | 25.0% |
| ! | CATTTGATTGGAATGAAATT+TGG | - | chr3_1:2765818-2765837 | Msa0344320:intron | 25.0% |
| !! | ATTGGAATGAAATTTGGAAT+GGG | - | chr3_1:2765824-2765843 | Msa0344320:intron | 25.0% |
| ! | GATCTATTACAAGATCAATT+TGG | - | chr3_1:2765899-2765918 | Msa0344320:CDS | 25.0% |
| ! | ATTACAAGATCAATTTGGAT+TGG | - | chr3_1:2765904-2765923 | Msa0344320:CDS | 25.0% |
| ! | CGTTTAGAAAATATAATTCG+AGG | - | chr3_1:2765935-2765954 | Msa0344320:CDS | 25.0% |
| ! | TCAAAAAAACGATTCATAAG+TGG | + | chr3_1:2766035-2766054 | None:intergenic | 25.0% |
| !! | GATCTAAAACTTGAGATAAT+GGG | + | chr3_1:2766063-2766082 | None:intergenic | 25.0% |
| ! | CTCTCAGAAATTTCAAAAAA+TGG | + | chr3_1:2766304-2766323 | None:intergenic | 25.0% |
| ! | ATATAGTATTCATCTCTACT+TGG | + | chr3_1:2766358-2766377 | None:intergenic | 25.0% |
| ! | AAGTAGAGATGAATACTATA+TGG | - | chr3_1:2766357-2766376 | Msa0344320:CDS | 25.0% |
| ! | CAATAGTTAGAAATTCTTGA+CGG | + | chr3_1:2766450-2766469 | None:intergenic | 25.0% |
| ! | AAGAATTTCTAACTATTGCA+TGG | - | chr3_1:2766452-2766471 | Msa0344320:CDS | 25.0% |
| ! | AGAATTTCTAACTATTGCAT+GGG | - | chr3_1:2766453-2766472 | Msa0344320:CDS | 25.0% |
| ! | CCAATAGAAAAATATTGGAA+GGG | + | chr3_1:2766505-2766524 | None:intergenic | 25.0% |
| ! | TCCAATAGAAAAATATTGGA+AGG | + | chr3_1:2766506-2766525 | None:intergenic | 25.0% |
| ! | AAGCTCCAATAGAAAAATAT+TGG | + | chr3_1:2766510-2766529 | None:intergenic | 25.0% |
| !! | ACTGACAAGATCATTTTATT+TGG | - | chr3_1:2766718-2766737 | Msa0344320:CDS | 25.0% |
| ! | GAACGTTGATATCTAATTAA+TGG | + | chr3_1:2766766-2766785 | None:intergenic | 25.0% |
| ! | TAAAGGTAAATGCGTAAAAA+AGG | - | chr3_1:2766825-2766844 | Msa0344320:CDS | 25.0% |
| ! | AAAGGTAAATGCGTAAAAAA+GGG | - | chr3_1:2766826-2766845 | Msa0344320:CDS | 25.0% |
| ! | AAAAATGGAATTGTGATTCT+GGG | - | chr3_1:2767108-2767127 | Msa0344320:CDS | 25.0% |
| ! | AATTAAAGTAGGTGATAAAG+TGG | - | chr3_1:2767382-2767401 | Msa0344320:CDS | 25.0% |
| !! | TAAGGTTTTCCTATTATAAC+AGG | + | chr3_1:2767761-2767780 | None:intergenic | 25.0% |
| !!! | CAAGTTGATGATAAAATACA+TGG | - | chr3_1:2767800-2767819 | Msa0344320:CDS | 25.0% |
| !! | GGTTTTGTAGATTCATTGAT+CGG | - | chr3_1:2765011-2765030 | Msa0344320:CDS | 30.0% |
| ! | GTTTTGTAGATTCATTGATC+GGG | - | chr3_1:2765012-2765031 | Msa0344320:CDS | 30.0% |
| ! | TTTTGTAGATTCATTGATCG+GGG | - | chr3_1:2765013-2765032 | Msa0344320:CDS | 30.0% |
| ! | TGATCCGTATCTTCAATTTT+TGG | + | chr3_1:2765064-2765083 | None:intergenic | 30.0% |
| ! | GCATCTTTTTCTTTTATCGA+GGG | + | chr3_1:2765133-2765152 | None:intergenic | 30.0% |
| ! | AGCATCTTTTTCTTTTATCG+AGG | + | chr3_1:2765134-2765153 | None:intergenic | 30.0% |
| CTCTGAATTATATATATCCG+CGG | - | chr3_1:2765177-2765196 | Msa0344320:CDS | 30.0% | |
| TCTGAATTATATATATCCGC+GGG | - | chr3_1:2765178-2765197 | Msa0344320:CDS | 30.0% | |
| ATTTACTATAGAAGTTCCCA+GGG | + | chr3_1:2765275-2765294 | None:intergenic | 30.0% | |
| TATCTATTATCGTTCAGAGT+TGG | - | chr3_1:2765339-2765358 | Msa0344320:CDS | 30.0% | |
| TATAGACTGAAATTCCGTTA+TGG | + | chr3_1:2765366-2765385 | None:intergenic | 30.0% | |
| TTGATAGAAAAGCAAGGATA+TGG | - | chr3_1:2765430-2765449 | Msa0344320:CDS | 30.0% | |
| TGATAGAAAAGCAAGGATAT+GGG | - | chr3_1:2765431-2765450 | Msa0344320:CDS | 30.0% | |
| GGAAAGACATAAAAATTTCG+GGG | + | chr3_1:2765548-2765567 | None:intergenic | 30.0% | |
| TATGTCTTTCCTCAATGAAA+AGG | - | chr3_1:2765557-2765576 | Msa0344320:CDS | 30.0% | |
| !!! | TTTTTTCCTCCTTTTCATTG+AGG | + | chr3_1:2765569-2765588 | None:intergenic | 30.0% |
| !! | GTCAAAAGAAAATGCCATTT+TGG | - | chr3_1:2765595-2765614 | Msa0344320:CDS | 30.0% |
| TTGTCGATAAAACTCCAAAA+TGG | + | chr3_1:2765612-2765631 | None:intergenic | 30.0% | |
| AATTCCGTACATAAAGATTC+AGG | + | chr3_1:2765665-2765684 | None:intergenic | 30.0% | |
| AACAAAGATGTGAATTAGGA+GGG | - | chr3_1:2765702-2765721 | Msa0344320:intron | 30.0% | |
| GTATATCAATGTTCAGTCTT+CGG | + | chr3_1:2765748-2765767 | None:intergenic | 30.0% | |
| GATTGGAATGAAATTTGGAA+TGG | - | chr3_1:2765823-2765842 | Msa0344320:intron | 30.0% | |
| ATCTTGTAATAGATCTGCTA+CGG | + | chr3_1:2765894-2765913 | None:intergenic | 30.0% | |
| ATAATTCGAGGAACTATATC+TGG | - | chr3_1:2765947-2765966 | Msa0344320:CDS | 30.0% | |
| GATTCATAAGTGGTTGTTAA+TGG | + | chr3_1:2766025-2766044 | None:intergenic | 30.0% | |
| ! | CGATCTAAAACTTGAGATAA+TGG | + | chr3_1:2766064-2766083 | None:intergenic | 30.0% |
| ! | TTTTCTCCCATGAACTATTT+GGG | + | chr3_1:2766101-2766120 | None:intergenic | 30.0% |
| ! | ATTTTCTCCCATGAACTATT+TGG | + | chr3_1:2766102-2766121 | None:intergenic | 30.0% |
| TGGGAGAAAATTGAGTTATT+TGG | - | chr3_1:2766111-2766130 | Msa0344320:CDS | 30.0% | |
| GGGAGAAAATTGAGTTATTT+GGG | - | chr3_1:2766112-2766131 | Msa0344320:CDS | 30.0% | |
| !!! | AATTTTTTAGCACTGAATCG+AGG | - | chr3_1:2766391-2766410 | Msa0344320:CDS | 30.0% |
| ! | CCCTTCCAATATTTTTCTAT+TGG | - | chr3_1:2766502-2766521 | Msa0344320:CDS | 30.0% |
| !! | ATGCATGCAAGTATTTTTGT+TGG | + | chr3_1:2766788-2766807 | None:intergenic | 30.0% |
| TATTAGTAGCTTATATGCCA+TGG | - | chr3_1:2766908-2766927 | Msa0344320:intron | 30.0% | |
| ATTAGTAGCTTATATGCCAT+GGG | - | chr3_1:2766909-2766928 | Msa0344320:intron | 30.0% | |
| GTCTAAATTTCGGAGTAAAT+GGG | + | chr3_1:2767088-2767107 | None:intergenic | 30.0% | |
| TGTCTAAATTTCGGAGTAAA+TGG | + | chr3_1:2767089-2767108 | None:intergenic | 30.0% | |
| CTCCGAAATTTAGACAAAAA+TGG | - | chr3_1:2767093-2767112 | Msa0344320:CDS | 30.0% | |
| CAAAAATGGAATTGTGATTC+TGG | - | chr3_1:2767107-2767126 | Msa0344320:CDS | 30.0% | |
| AGATTATTACGAGCTATACT+TGG | - | chr3_1:2767213-2767232 | Msa0344320:CDS | 30.0% | |
| GATTATTACGAGCTATACTT+GGG | - | chr3_1:2767214-2767233 | Msa0344320:CDS | 30.0% | |
| ! | TTTTAGACAAGTTTCCTTTG+AGG | + | chr3_1:2767253-2767272 | None:intergenic | 30.0% |
| ! | ACTTGTCTAAAACTACCTAT+AGG | - | chr3_1:2767261-2767280 | Msa0344320:CDS | 30.0% |
| CAGAAACGTGAAATTAAAGT+AGG | - | chr3_1:2767371-2767390 | Msa0344320:CDS | 30.0% | |
| ! | TTCAAAGATTTTGTCTAGAC+AGG | - | chr3_1:2767433-2767452 | Msa0344320:intron | 30.0% |
| AATGAATGTAGGACAGATAT+TGG | - | chr3_1:2767523-2767542 | Msa0344320:intron | 30.0% | |
| TGTTCATATCTCTCATCAAA+AGG | + | chr3_1:2767602-2767621 | None:intergenic | 30.0% | |
| ! | TTTTGATGAGAGATATGAAC+AGG | - | chr3_1:2767601-2767620 | Msa0344320:intron | 30.0% |
| ! | TTCAGAAAACACAAGTTTTC+TGG | + | chr3_1:2767633-2767652 | None:intergenic | 30.0% |
| GAATATTTGATGGAAGAACA+GGG | - | chr3_1:2767720-2767739 | Msa0344320:intron | 30.0% | |
| ATTATAACAGGCTGTTCAAA+AGG | + | chr3_1:2767749-2767768 | None:intergenic | 30.0% | |
| TTTGAACAGCCTGTTATAAT+AGG | - | chr3_1:2767749-2767768 | Msa0344320:intron | 30.0% | |
| ATGGGGAAATTGAAAATGCT+TGG | - | chr3_1:2764932-2764951 | Msa0344320:CDS | 35.0% | |
| TGGGGAAATTGAAAATGCTT+GGG | - | chr3_1:2764933-2764952 | Msa0344320:CDS | 35.0% | |
| AAATTGAAAATGCTTGGGGT+TGG | - | chr3_1:2764938-2764957 | Msa0344320:CDS | 35.0% | |
| AATTGAAAATGCTTGGGGTT+GGG | - | chr3_1:2764939-2764958 | Msa0344320:CDS | 35.0% | |
| CGCGGATATATATAATTCAG+AGG | + | chr3_1:2765179-2765198 | None:intergenic | 35.0% | |
| ATATATCCGCGGGATTAATT+TGG | - | chr3_1:2765188-2765207 | Msa0344320:CDS | 35.0% | |
| ! | GTTTTTCCAAATTAATCCCG+CGG | + | chr3_1:2765197-2765216 | None:intergenic | 35.0% |
| ATTCCTCTAATGAATTCCCT+GGG | - | chr3_1:2765256-2765275 | Msa0344320:CDS | 35.0% | |
| CATTTACTATAGAAGTTCCC+AGG | + | chr3_1:2765276-2765295 | None:intergenic | 35.0% | |
| CTGGGAACTTCTATAGTAAA+TGG | - | chr3_1:2765274-2765293 | Msa0344320:CDS | 35.0% | |
| AATCAAATATTGCAAAGCCC+TGG | - | chr3_1:2765316-2765335 | Msa0344320:CDS | 35.0% | |
| CTGAACGATAATAGATACCA+GGG | + | chr3_1:2765336-2765355 | None:intergenic | 35.0% | |
| TCTGAACGATAATAGATACC+AGG | + | chr3_1:2765337-2765356 | None:intergenic | 35.0% | |
| AACGGAATTTCAGTCTATAC+TGG | - | chr3_1:2765367-2765386 | Msa0344320:CDS | 35.0% | |
| TGGCACAATAATATCCGATT+GGG | - | chr3_1:2765387-2765406 | Msa0344320:CDS | 35.0% | |
| !! | TCTAGTTCTATCATCAGCTA+TGG | - | chr3_1:2765485-2765504 | Msa0344320:CDS | 35.0% |
| !! | CTAGTTCTATCATCAGCTAT+GGG | - | chr3_1:2765486-2765505 | Msa0344320:CDS | 35.0% |
| ! | TATCGACAATTTGCTTGTGT+AGG | - | chr3_1:2765623-2765642 | Msa0344320:CDS | 35.0% |
| CAACAAAGATGTGAATTAGG+AGG | - | chr3_1:2765701-2765720 | Msa0344320:intron | 35.0% | |
| TCAGTCTTCGGTTCATATTT+CGG | + | chr3_1:2765736-2765755 | None:intergenic | 35.0% | |
| GTTGAAGTCACTAAATTCTG+AGG | + | chr3_1:2766001-2766020 | None:intergenic | 35.0% | |
| AACTATTTGGGTCAATGGAT+TGG | + | chr3_1:2766089-2766108 | None:intergenic | 35.0% | |
| CATTGACCCAAATAGTTCAT+GGG | - | chr3_1:2766092-2766111 | Msa0344320:CDS | 35.0% | |
| AAATTGAGTTATTTGGGTCC+TGG | - | chr3_1:2766118-2766137 | Msa0344320:CDS | 35.0% | |
| GGAATCAATGTAGGACTTAT+TGG | - | chr3_1:2766229-2766248 | Msa0344320:CDS | 35.0% | |
| ! | TGAATACTATATGGTAGCGA+CGG | - | chr3_1:2766366-2766385 | Msa0344320:CDS | 35.0% |
| ATGCTCGATAAAAGGAATCA+GGG | + | chr3_1:2766533-2766552 | None:intergenic | 35.0% | |
| TATGCTCGATAAAAGGAATC+AGG | + | chr3_1:2766534-2766553 | None:intergenic | 35.0% | |
| GCATCATTATGCTCGATAAA+AGG | + | chr3_1:2766541-2766560 | None:intergenic | 35.0% | |
| ! | AGTTCCAACAATGCACTTTT+CGG | + | chr3_1:2766620-2766639 | None:intergenic | 35.0% |
| CAAAAATCCCAGGTTCATAA+AGG | - | chr3_1:2766808-2766827 | Msa0344320:CDS | 35.0% | |
| GCATTTACCTTTATGAACCT+GGG | + | chr3_1:2766818-2766837 | None:intergenic | 35.0% | |
| !! | AAGGGACAAATTTTAGCAGA+TGG | - | chr3_1:2766844-2766863 | Msa0344320:CDS | 35.0% |
| !! | AATTGTGATTCTGGGATCTT+GGG | - | chr3_1:2767116-2767135 | Msa0344320:CDS | 35.0% |
| !! | AGAAACAGGGGATATTTTAG+TGG | - | chr3_1:2767140-2767159 | Msa0344320:CDS | 35.0% |
| !!! | GAAACAGGGGATATTTTAGT+GGG | - | chr3_1:2767141-2767160 | Msa0344320:CDS | 35.0% |
| GCTCGTAATAATCTATCTTC+CGG | + | chr3_1:2767207-2767226 | None:intergenic | 35.0% | |
| ! | TGTCTAAAACTACCTATAGG+TGG | - | chr3_1:2767264-2767283 | Msa0344320:CDS | 35.0% |
| TAAAACTACCTATAGGTGGT+AGG | - | chr3_1:2767268-2767287 | Msa0344320:CDS | 35.0% | |
| AAAACTACCTATAGGTGGTA+GGG | - | chr3_1:2767269-2767288 | Msa0344320:CDS | 35.0% | |
| TCCATCTCACATCAATAACT+CGG | + | chr3_1:2767296-2767315 | None:intergenic | 35.0% | |
| !!! | TAGCTAGAACCTGCTTTTTT+TGG | + | chr3_1:2767320-2767339 | None:intergenic | 35.0% |
| !! | GATATGCCTTATTTGCAAGA+TGG | - | chr3_1:2767455-2767474 | Msa0344320:intron | 35.0% |
| ATATGGTCTTCAACCCATTA+GGG | - | chr3_1:2767489-2767508 | Msa0344320:intron | 35.0% | |
| CAGATATTGGAATGTTCACT+CGG | - | chr3_1:2767536-2767555 | Msa0344320:intron | 35.0% | |
| TGGATTCGATGTTTGTTTAC+TGG | + | chr3_1:2767666-2767685 | None:intergenic | 35.0% | |
| GTAAACAAACATCGAATCCA+TGG | - | chr3_1:2767666-2767685 | Msa0344320:intron | 35.0% | |
| GGAATATTTGATGGAAGAAC+AGG | - | chr3_1:2767719-2767738 | Msa0344320:intron | 35.0% | |
| AGAAAGACTTCCAGATTCAA+AGG | - | chr3_1:2768122-2768141 | Msa0344320:CDS | 35.0% | |
| AAACTTCCTTCCTTTGAATC+TGG | + | chr3_1:2768135-2768154 | None:intergenic | 35.0% | |
| GGGGAAATTGAAAATGCTTG+GGG | - | chr3_1:2764934-2764953 | Msa0344320:CDS | 40.0% | |
| CATTCCTCTAATGAATTCCC+TGG | - | chr3_1:2765255-2765274 | Msa0344320:CDS | 40.0% | |
| CTGGCACAATAATATCCGAT+TGG | - | chr3_1:2765386-2765405 | Msa0344320:CDS | 40.0% | |
| GGCACAATAATATCCGATTG+GGG | - | chr3_1:2765388-2765407 | Msa0344320:CDS | 40.0% | |
| GCACAATAATATCCGATTGG+GGG | - | chr3_1:2765389-2765408 | Msa0344320:CDS | 40.0% | |
| CACAATAATATCCGATTGGG+GGG | - | chr3_1:2765390-2765409 | Msa0344320:CDS | 40.0% | |
| GTCTTTCCTCAATGAAAAGG+AGG | - | chr3_1:2765560-2765579 | Msa0344320:CDS | 40.0% | |
| AGATGTGAATTAGGAGGGAT+TGG | - | chr3_1:2765707-2765726 | Msa0344320:intron | 40.0% | |
| ! | GTCACTAAATTCTGAGGAGT+AGG | + | chr3_1:2765995-2766014 | None:intergenic | 40.0% |
| CCATGAACTATTTGGGTCAA+TGG | + | chr3_1:2766094-2766113 | None:intergenic | 40.0% | |
| CCATTGACCCAAATAGTTCA+TGG | - | chr3_1:2766091-2766110 | Msa0344320:CDS | 40.0% | |
| !!! | GAACTGCTAGTTTTCGGATA+CGG | - | chr3_1:2766155-2766174 | Msa0344320:CDS | 40.0% |
| !!! | AACTGCTAGTTTTCGGATAC+GGG | - | chr3_1:2766156-2766175 | Msa0344320:CDS | 40.0% |
| GATATCCATCCTAGTCACTA+TGG | - | chr3_1:2766178-2766197 | Msa0344320:CDS | 40.0% | |
| CATTTGTCCAATTGACACCT+CGG | - | chr3_1:2766204-2766223 | Msa0344320:CDS | 40.0% | |
| TGTAGGACTTATTGGATCCT+TGG | - | chr3_1:2766237-2766256 | Msa0344320:CDS | 40.0% | |
| ! | GAATACTATATGGTAGCGAC+GGG | - | chr3_1:2766367-2766386 | Msa0344320:CDS | 40.0% |
| TCTAACTATTGCATGGGAAC+AGG | - | chr3_1:2766459-2766478 | Msa0344320:CDS | 40.0% | |
| ! | GAAAAGTGCATTGTTGGAAC+TGG | - | chr3_1:2766619-2766638 | Msa0344320:CDS | 40.0% |
| TTGCATGCATCAAAAATCCC+AGG | - | chr3_1:2766798-2766817 | Msa0344320:CDS | 40.0% | |
| CGCATTTACCTTTATGAACC+TGG | + | chr3_1:2766819-2766838 | None:intergenic | 40.0% | |
| TCAGAATTGTAACCTTCCCA+TGG | + | chr3_1:2766928-2766947 | None:intergenic | 40.0% | |
| TGTACTCATTAGTGAACGTC+TGG | - | chr3_1:2766954-2766973 | Msa0344320:intron | 40.0% | |
| TAGTGATTCTTTCAGGACCA+TGG | + | chr3_1:2767044-2767063 | None:intergenic | 40.0% | |
| ! | AGTAAATGGGCTTCTAGATG+TGG | + | chr3_1:2767075-2767094 | None:intergenic | 40.0% |
| !! | GAATTGTGATTCTGGGATCT+TGG | - | chr3_1:2767115-2767134 | Msa0344320:CDS | 40.0% |
| GGGTAAATTAACGCCTCAAA+TGG | - | chr3_1:2767161-2767180 | Msa0344320:CDS | 40.0% | |
| TAATCTATCTTCCGGAGCAT+AGG | + | chr3_1:2767199-2767218 | None:intergenic | 40.0% | |
| AAACTACCTATAGGTGGTAG+GGG | - | chr3_1:2767270-2767289 | Msa0344320:CDS | 40.0% | |
| GAGATGGATCCAAAAAAAGC+AGG | - | chr3_1:2767308-2767327 | Msa0344320:CDS | 40.0% | |
| AAAGTAGGTGATAAAGTGGC+CGG | - | chr3_1:2767386-2767405 | Msa0344320:CDS | 40.0% | |
| ! | ACCTTTATTTCCATGTCTCC+CGG | + | chr3_1:2767408-2767427 | None:intergenic | 40.0% |
| GGTCTTCCATCTTGCAAATA+AGG | + | chr3_1:2767464-2767483 | None:intergenic | 40.0% | |
| ! | TGGGTTGAAGACCATATCAA+CGG | + | chr3_1:2767486-2767505 | None:intergenic | 40.0% |
| GATATGGTCTTCAACCCATT+AGG | - | chr3_1:2767488-2767507 | Msa0344320:intron | 40.0% | |
| TATGGTCTTCAACCCATTAG+GGG | - | chr3_1:2767490-2767509 | Msa0344320:intron | 40.0% | |
| TGTCCTACATTCATTCGTGA+GGG | + | chr3_1:2767518-2767537 | None:intergenic | 40.0% | |
| !! | AATGTTCACTCGGATTAGCT+GGG | - | chr3_1:2767546-2767565 | Msa0344320:intron | 40.0% |
| TGATGAGAGATATGAACAGG+AGG | - | chr3_1:2767604-2767623 | Msa0344320:intron | 40.0% | |
| TACTCGGGTTCAAATATCCA+TGG | + | chr3_1:2767686-2767705 | None:intergenic | 40.0% | |
| GATATTTGAACCCGAGTATC+CGG | - | chr3_1:2767688-2767707 | Msa0344320:intron | 40.0% | |
| ATATTTGAACCCGAGTATCC+GGG | - | chr3_1:2767689-2767708 | Msa0344320:intron | 40.0% | |
| TCAAATATTCCGCTCTTTCC+CGG | + | chr3_1:2767710-2767729 | None:intergenic | 40.0% | |
| GGAAAGAGCGGAATATTTGA+TGG | - | chr3_1:2767710-2767729 | Msa0344320:intron | 40.0% | |
| AAAATACATGGACGTTCCAG+TGG | - | chr3_1:2767812-2767831 | Msa0344320:CDS | 40.0% | |
| AACAAGTGCATAATGTCCAC+TGG | + | chr3_1:2767831-2767850 | None:intergenic | 40.0% | |
| GTTACACAACAACCCCTTAA+AGG | - | chr3_1:2767848-2767867 | Msa0344320:CDS | 40.0% | |
| ACAACAACCCCTTAAAGGAA+GGG | - | chr3_1:2767853-2767872 | Msa0344320:CDS | 40.0% | |
| TTGTTTCGCCCTTCCTTTAA+GGG | + | chr3_1:2767864-2767883 | None:intergenic | 40.0% | |
| !! | AAAGCTCGTCAAGAAGTACT+CGG | - | chr3_1:2767983-2768002 | Msa0344320:CDS | 40.0% |
| GTACTCGGAACTACGATTAT+TGG | - | chr3_1:2767998-2768017 | Msa0344320:CDS | 40.0% | |
| AGGAACAATACCTAAACCTG+TGG | - | chr3_1:2768021-2768040 | Msa0344320:CDS | 40.0% | |
| ACGAGCAATCGAAAAGATTC+TGG | + | chr3_1:2768052-2768071 | None:intergenic | 40.0% | |
| GGAAGTCTTTCTCAGATACA+AGG | + | chr3_1:2768114-2768133 | None:intergenic | 40.0% | |
| AGACTTCCAGATTCAAAGGA+AGG | - | chr3_1:2768126-2768145 | Msa0344320:CDS | 40.0% | |
| GAAGGAATGTCTACACTACC+CGG | - | chr3_1:2764965-2764984 | Msa0344320:CDS | 45.0% | |
| GTTCCCAGGGAATTCATTAG+AGG | + | chr3_1:2765262-2765281 | None:intergenic | 45.0% | |
| CGTTCAGAGTTGGACCATAA+CGG | - | chr3_1:2765349-2765368 | Msa0344320:CDS | 45.0% | |
| ACTCTAATCTTCCCCCCAAT+CGG | + | chr3_1:2765404-2765423 | None:intergenic | 45.0% | |
| ! | CGACAATTTGCTTGTGTAGG+CGG | - | chr3_1:2765626-2765645 | Msa0344320:CDS | 45.0% |
| GCAGCTGTCAATATATCTCG+CGG | + | chr3_1:2765794-2765813 | None:intergenic | 45.0% | |
| GCGAGATATATTGACAGCTG+CGG | - | chr3_1:2765793-2765812 | Msa0344320:intron | 45.0% | |
| ACAGCTGCGGATCATTTGAT+TGG | - | chr3_1:2765806-2765825 | Msa0344320:intron | 45.0% | |
| TTGAGTTATTTGGGTCCTGG+AGG | - | chr3_1:2766121-2766140 | Msa0344320:CDS | 45.0% | |
| CAAATGCGTCCATAGTGACT+AGG | + | chr3_1:2766190-2766209 | None:intergenic | 45.0% | |
| ! | ATTCCTTCCGAGGTGTCAAT+TGG | + | chr3_1:2766214-2766233 | None:intergenic | 45.0% |
| ACCTCGGAAGGAATCAATGT+AGG | - | chr3_1:2766220-2766239 | Msa0344320:CDS | 45.0% | |
| !! | TCCTACATTGATTCCTTCCG+AGG | + | chr3_1:2766224-2766243 | None:intergenic | 45.0% |
| AATCCTTGCGTGAATTGCCA+AGG | + | chr3_1:2766257-2766276 | None:intergenic | 45.0% | |
| TTGGCAATTCACGCAAGGAT+TGG | - | chr3_1:2766256-2766275 | Msa0344320:CDS | 45.0% | |
| ! | AGCACTGAATCGAGGTATTC+AGG | - | chr3_1:2766399-2766418 | Msa0344320:CDS | 45.0% |
| ! | ACTGAATCGAGGTATTCAGG+AGG | - | chr3_1:2766402-2766421 | Msa0344320:CDS | 45.0% |
| ! | AATTCTTGACGGTATCGAGC+TGG | + | chr3_1:2766439-2766458 | None:intergenic | 45.0% |
| GTCAAGCAGTTCCTCTTTCT+CGG | - | chr3_1:2766593-2766612 | Msa0344320:CDS | 45.0% | |
| GTGCATTGTTGGAACTGGAT+TGG | - | chr3_1:2766624-2766643 | Msa0344320:CDS | 45.0% | |
| AACGATCTTTCCTGCGTGTT+CGG | + | chr3_1:2766689-2766708 | None:intergenic | 45.0% | |
| GTAGCTTATATGCCATGGGA+AGG | - | chr3_1:2766913-2766932 | Msa0344320:intron | 45.0% | |
| TGGGATCTTGGGTAGAAACA+GGG | - | chr3_1:2767127-2767146 | Msa0344320:CDS | 45.0% | |
| GAGGATTCTTTCGCCATTTG+AGG | + | chr3_1:2767177-2767196 | None:intergenic | 45.0% | |
| GAAAGAATCCTCCTATGCTC+CGG | - | chr3_1:2767185-2767204 | Msa0344320:CDS | 45.0% | |
| ACGAGCTATACTTGGGATTC+AGG | - | chr3_1:2767221-2767240 | Msa0344320:CDS | 45.0% | |
| !! | GATTCAGGTATCGACCTCAA+AGG | - | chr3_1:2767236-2767255 | Msa0344320:CDS | 45.0% |
| GCCGAGTTATTGATGTGAGA+TGG | - | chr3_1:2767292-2767311 | Msa0344320:CDS | 45.0% | |
| AAGTAGGTGATAAAGTGGCC+GGG | - | chr3_1:2767387-2767406 | Msa0344320:CDS | 45.0% | |
| AGATGGAAGACCCGTTGATA+TGG | - | chr3_1:2767472-2767491 | Msa0344320:intron | 45.0% | |
| GGGTTGAAGACCATATCAAC+GGG | + | chr3_1:2767485-2767504 | None:intergenic | 45.0% | |
| GTACCCTCACGAATGAATGT+AGG | - | chr3_1:2767512-2767531 | Msa0344320:intron | 45.0% | |
| CTGTCCTACATTCATTCGTG+AGG | + | chr3_1:2767519-2767538 | None:intergenic | 45.0% | |
| !! | GAATGTTCACTCGGATTAGC+TGG | - | chr3_1:2767545-2767564 | Msa0344320:intron | 45.0% |
| CACAACAACCCCTTAAAGGA+AGG | - | chr3_1:2767852-2767871 | Msa0344320:CDS | 45.0% | |
| TGTTTCGCCCTTCCTTTAAG+GGG | + | chr3_1:2767863-2767882 | None:intergenic | 45.0% | |
| CTTGTTTCGCCCTTCCTTTA+AGG | + | chr3_1:2767865-2767884 | None:intergenic | 45.0% | |
| CTTAAAGGAAGGGCGAAACA+AGG | - | chr3_1:2767863-2767882 | Msa0344320:CDS | 45.0% | |
| CTCGGAACTACGATTATTGG+AGG | - | chr3_1:2768001-2768020 | Msa0344320:CDS | 45.0% | |
| !! | AAAGATTCTGGAGCATCCAC+AGG | + | chr3_1:2768040-2768059 | None:intergenic | 45.0% |
| CGTTCGAGAACTACGATCTT+TGG | - | chr3_1:2768069-2768088 | Msa0344320:CDS | 45.0% | |
| ! | AGAACTACGATCTTTGGCTC+TGG | - | chr3_1:2768075-2768094 | Msa0344320:CDS | 45.0% |
| ATGCTTGGGGTTGGGAATGA+AGG | - | chr3_1:2764947-2764966 | Msa0344320:CDS | 50.0% | |
| GGATATGGGCTCGTGTAAGT+AGG | - | chr3_1:2765445-2765464 | Msa0344320:CDS | 50.0% | |
| TTTGGGTCCTGGAGGATTGA+CGG | - | chr3_1:2766129-2766148 | Msa0344320:CDS | 50.0% | |
| TGCGTCCATAGTGACTAGGA+TGG | + | chr3_1:2766186-2766205 | None:intergenic | 50.0% | |
| TGTCCAATTGACACCTCGGA+AGG | - | chr3_1:2766208-2766227 | Msa0344320:CDS | 50.0% | |
| GATCCTTGGCAATTCACGCA+AGG | - | chr3_1:2766251-2766270 | Msa0344320:CDS | 50.0% | |
| !! | TTCACGCAAGGATTGGTCCT+TGG | - | chr3_1:2766263-2766282 | Msa0344320:CDS | 50.0% |
| !! | TCACGCAAGGATTGGTCCTT+GGG | - | chr3_1:2766264-2766283 | Msa0344320:CDS | 50.0% |
| GGACTTTCTATAGACCCCCA+AGG | + | chr3_1:2766283-2766302 | None:intergenic | 50.0% | |
| ! | CACTTTTCGGACCGAGAAAG+AGG | + | chr3_1:2766607-2766626 | None:intergenic | 50.0% |
| ! | CGGTCCGAAAAGTGCATTGT+TGG | - | chr3_1:2766613-2766632 | Msa0344320:CDS | 50.0% |
| ! | AACTGGATTGGAACGCCAAG+TGG | - | chr3_1:2766636-2766655 | Msa0344320:CDS | 50.0% |
| ! | CTCCTGAATCTAAGGCCACT+TGG | + | chr3_1:2766654-2766673 | None:intergenic | 50.0% |
| AGCGGGAACTCCTGAATCTA+AGG | + | chr3_1:2766662-2766681 | None:intergenic | 50.0% | |
| CAGACTCATGTGACAAGCCA+TGG | - | chr3_1:2767024-2767043 | Msa0344320:intron | 50.0% | |
| CTGGGATCTTGGGTAGAAAC+AGG | - | chr3_1:2767126-2767145 | Msa0344320:CDS | 50.0% | |
| GGGATCTTGGGTAGAAACAG+GGG | - | chr3_1:2767128-2767147 | Msa0344320:CDS | 50.0% | |
| TCTATCTTCCGGAGCATAGG+AGG | + | chr3_1:2767196-2767215 | None:intergenic | 50.0% | |
| GCCGGGAGACATGGAAATAA+AGG | - | chr3_1:2767404-2767423 | Msa0344320:CDS | 50.0% | |
| !! | TTCGTGAGGGTACCCCTAAT+GGG | + | chr3_1:2767505-2767524 | None:intergenic | 50.0% |
| !! | ATTCGTGAGGGTACCCCTAA+TGG | + | chr3_1:2767506-2767525 | None:intergenic | 50.0% |
| AAAGGAAGGGCGAAACAAGG+AGG | - | chr3_1:2767866-2767885 | Msa0344320:CDS | 50.0% | |
| AAACAAGGAGGACAACGGGT+AGG | - | chr3_1:2767878-2767897 | Msa0344320:CDS | 50.0% | |
| GGTAGGCGAAATGGAGGTTT+GGG | - | chr3_1:2767895-2767914 | Msa0344320:CDS | 50.0% | |
| ! | TCTGGAGCATCCACAGGTTT+AGG | + | chr3_1:2768034-2768053 | None:intergenic | 50.0% |
| TTGGGTCCTGGAGGATTGAC+GGG | - | chr3_1:2766130-2766149 | Msa0344320:CDS | 55.0% | |
| !!! | CGGGGCGAACTGCTAGTTTT+CGG | - | chr3_1:2766149-2766168 | Msa0344320:CDS | 55.0% |
| !! | CACGCAAGGATTGGTCCTTG+GGG | - | chr3_1:2766265-2766284 | Msa0344320:CDS | 55.0% |
| !! | ACGCAAGGATTGGTCCTTGG+GGG | - | chr3_1:2766266-2766285 | Msa0344320:CDS | 55.0% |
| ! | CGCCAAGTGGCCTTAGATTC+AGG | - | chr3_1:2766649-2766668 | Msa0344320:CDS | 55.0% |
| TCCTGCGTGTTCGGCTATAG+CGG | + | chr3_1:2766680-2766699 | None:intergenic | 55.0% | |
| !! | GCAGATGGTGCTGCTACTGT+TGG | - | chr3_1:2766859-2766878 | Msa0344320:CDS | 55.0% |
| !! | GATGGTGCTGCTACTGTTGG+CGG | - | chr3_1:2766862-2766881 | Msa0344320:CDS | 55.0% |
| TGTTGGCGGTGAACTCGCTT+TGG | - | chr3_1:2766876-2766895 | Msa0344320:CDS | 55.0% | |
| GTTGGCGGTGAACTCGCTTT+GGG | - | chr3_1:2766877-2766896 | Msa0344320:CDS | 55.0% | |
| GATAAAGTGGCCGGGAGACA+TGG | - | chr3_1:2767395-2767414 | Msa0344320:CDS | 55.0% | |
| TCCGCTCTTTCCCGGATACT+CGG | + | chr3_1:2767702-2767721 | None:intergenic | 55.0% | |
| GGGCGAAACAAGGAGGACAA+CGG | - | chr3_1:2767873-2767892 | Msa0344320:CDS | 55.0% | |
| GGCGAAACAAGGAGGACAAC+GGG | - | chr3_1:2767874-2767893 | Msa0344320:CDS | 55.0% | |
| AGGACAACGGGTAGGCGAAA+TGG | - | chr3_1:2767886-2767905 | Msa0344320:CDS | 55.0% | |
| ACAACGGGTAGGCGAAATGG+AGG | - | chr3_1:2767889-2767908 | Msa0344320:CDS | 55.0% | |
| GGGTAGGCGAAATGGAGGTT+TGG | - | chr3_1:2767894-2767913 | Msa0344320:CDS | 55.0% | |
| TGGGTCCTGGAGGATTGACG+GGG | - | chr3_1:2766131-2766150 | Msa0344320:CDS | 60.0% | |
| CCTGCGTGTTCGGCTATAGC+GGG | + | chr3_1:2766679-2766698 | None:intergenic | 60.0% | |
| ACTCGGCCCCTACCACCTAT+AGG | + | chr3_1:2767279-2767298 | None:intergenic | 60.0% | |
| CCGCTCTTTCCCGGATACTC+GGG | + | chr3_1:2767701-2767720 | None:intergenic | 60.0% | |
| CCCGAGTATCCGGGAAAGAG+CGG | - | chr3_1:2767698-2767717 | Msa0344320:intron | 60.0% | |
| AATGGAGGTTTGGGCGCTCG+AGG | - | chr3_1:2767904-2767923 | Msa0344320:CDS | 60.0% | |
| ATGGAGGTTTGGGCGCTCGA+GGG | - | chr3_1:2767905-2767924 | Msa0344320:CDS | 60.0% | |
| GTTCGCCCCGTCAATCCTCC+AGG | + | chr3_1:2766139-2766158 | None:intergenic | 65.0% | |
| CCCGCTATAGCCGAACACGC+AGG | - | chr3_1:2766676-2766695 | Msa0344320:CDS | 65.0% | |
| TGGAGGTTTGGGCGCTCGAG+GGG | - | chr3_1:2767906-2767925 | Msa0344320:CDS | 65.0% | |
| GTTTGGGCGCTCGAGGGGTT+CGG | - | chr3_1:2767911-2767930 | Msa0344320:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 2764932 | 2768156 | 2764932 | ID=Msa0344320;Name=Msa0344320 |
| chr3_1 | mRNA | 2764932 | 2768156 | 2764932 | ID=Msa0344320-mRNA-1;Parent=Msa0344320;Name=Msa0344320-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|4|0|888 |
| chr3_1 | exon | 2767751 | 2768156 | 2767751 | ID=Msa0344320-mRNA-1:exon:877;Parent=Msa0344320-mRNA-1 |
| chr3_1 | exon | 2767044 | 2767443 | 2767044 | ID=Msa0344320-mRNA-1:exon:876;Parent=Msa0344320-mRNA-1 |
| chr3_1 | exon | 2765846 | 2766923 | 2765846 | ID=Msa0344320-mRNA-1:exon:875;Parent=Msa0344320-mRNA-1 |
| chr3_1 | exon | 2764932 | 2765714 | 2764932 | ID=Msa0344320-mRNA-1:exon:874;Parent=Msa0344320-mRNA-1 |
| chr3_1 | CDS | 2767751 | 2768156 | 2767751 | ID=Msa0344320-mRNA-1:cds;Parent=Msa0344320-mRNA-1 |
| chr3_1 | CDS | 2767044 | 2767443 | 2767044 | ID=Msa0344320-mRNA-1:cds;Parent=Msa0344320-mRNA-1 |
| chr3_1 | CDS | 2765846 | 2766923 | 2765846 | ID=Msa0344320-mRNA-1:cds;Parent=Msa0344320-mRNA-1 |
| chr3_1 | CDS | 2764932 | 2765714 | 2764932 | ID=Msa0344320-mRNA-1:cds;Parent=Msa0344320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
