Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1086930 | YP_009988094.1 | 100.000 | 325 | 0 | 0 | 1 | 325 | 746 | 1070 | 0.0 | 670 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1086930 | sp|Q9BBS9|RPOB_LOTJA | 94.462 | 325 | 18 | 0 | 1 | 325 | 746 | 1070 | 0.0 | 636 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1086930 | A0A7G9ISI7 | 100.000 | 325 | 0 | 0 | 1 | 325 | 746 | 1070 | 0.0 | 670 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0095230 | Msa1086930 | 0.809597 | 1.749283e-50 | -8.615850e-47 |
Msa0095280 | Msa1086930 | 0.801322 | 9.508083e-49 | -8.615850e-47 |
Msa0139790 | Msa1086930 | 0.862707 | 4.188911e-64 | -8.615850e-47 |
Msa0139830 | Msa1086930 | 0.839318 | 1.702085e-57 | -8.615850e-47 |
Msa1086110 | Msa1086930 | 0.861159 | 1.248204e-63 | -8.615850e-47 |
Msa1086130 | Msa1086930 | 0.859427 | 4.167836e-63 | -8.615850e-47 |
Msa1086220 | Msa1086930 | 0.866398 | 2.936518e-65 | -8.615850e-47 |
Msa1086240 | Msa1086930 | 0.833501 | 5.142692e-56 | -8.615850e-47 |
Msa1086670 | Msa1086930 | 0.802529 | 5.372616e-49 | -8.615850e-47 |
Msa1086930 | Msa1143110 | 0.829600 | 4.702311e-55 | -8.615850e-47 |
Msa1086930 | Msa1143190 | 0.843543 | 1.313531e-58 | -8.615850e-47 |
Msa1086930 | Msa1305100 | 0.812993 | 3.205699e-51 | -8.615850e-47 |
Msa1086930 | Msa1305150 | 0.806306 | 8.771366e-50 | -8.615850e-47 |
Msa1086930 | Msa1354940 | 0.851034 | 1.154489e-60 | -8.615850e-47 |
Msa1086930 | Msa1355030 | 0.807597 | 4.677181e-50 | -8.615850e-47 |
Msa1086930 | Msa1355110 | 0.853022 | 3.145024e-61 | -8.615850e-47 |
Msa1086930 | Msa1380630 | 0.838787 | 2.336240e-57 | -8.615850e-47 |
Msa1086930 | Msa1380670 | 0.832116 | 1.135750e-55 | -8.615850e-47 |
Msa1086930 | Msa1380700 | 0.847921 | 8.516970e-60 | -8.615850e-47 |
Msa0268590 | Msa1086930 | 0.845596 | 3.680345e-59 | -8.615850e-47 |
Msa0268610 | Msa1086930 | 0.837171 | 6.082032e-57 | -8.615850e-47 |
Msa0268710 | Msa1086930 | 0.804773 | 1.838869e-49 | -8.615850e-47 |
Msa0268820 | Msa1086930 | 0.862484 | 4.904140e-64 | -8.615850e-47 |
Msa0269030 | Msa1086930 | 0.825724 | 4.009758e-54 | -8.615850e-47 |
Msa0344320 | Msa1086930 | 0.830798 | 2.396677e-55 | -8.615850e-47 |
Msa0484000 | Msa1086930 | 0.851635 | 7.806363e-61 | -8.615850e-47 |
Msa0582500 | Msa1086930 | 0.855842 | 4.810290e-62 | -8.615850e-47 |
Msa0582670 | Msa1086930 | 0.819084 | 1.398046e-52 | -8.615850e-47 |
Msa0582680 | Msa1086930 | 0.859059 | 5.374405e-63 | -8.615850e-47 |
Msa0582790 | Msa1086930 | 0.873273 | 1.671214e-67 | -8.615850e-47 |
Msa0582800 | Msa1086930 | 0.842534 | 2.439221e-58 | -8.615850e-47 |
Msa0921030 | Msa1086930 | 0.848575 | 5.615605e-60 | -8.615850e-47 |
Msa0931060 | Msa1086930 | 0.877518 | 5.892551e-69 | -8.615850e-47 |
Msa0931120 | Msa1086930 | 0.856203 | 3.771001e-62 | -8.615850e-47 |
Msa0931250 | Msa1086930 | 0.803492 | 3.396827e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1086930 | MtrunA17_Chr4g0016641 | 99.692 | 325 | 1 | 0 | 1 | 325 | 751 | 1075 | 0.0 | 665 |
Msa1086930 | MtrunA17_CPg0493041 | 99.692 | 325 | 1 | 0 | 1 | 325 | 751 | 1075 | 0.0 | 665 |
Msa1086930 | MtrunA17_Chr4g0015541 | 87.619 | 210 | 2 | 1 | 116 | 325 | 1 | 186 | 6.58e-127 | 365 |
Msa1086930 | MtrunA17_Chr1g0159041 | 73.333 | 150 | 4 | 1 | 1 | 150 | 209 | 322 | 1.97e-67 | 214 |
Msa1086930 | MtrunA17_Chr8g0345421 | 31.228 | 285 | 166 | 5 | 38 | 306 | 853 | 1123 | 2.72e-32 | 127 |
Msa1086930 | MtrunA17_Chr1g0155911 | 30.159 | 252 | 146 | 4 | 70 | 306 | 939 | 1175 | 1.72e-31 | 125 |
Msa1086930 | MtrunA17_Chr4g0069391 | 30.472 | 233 | 155 | 2 | 60 | 291 | 916 | 1142 | 9.90e-26 | 108 |
Msa1086930 | MtrunA17_Chr8g0375171 | 26.498 | 317 | 186 | 9 | 17 | 308 | 885 | 1179 | 5.86e-21 | 94.0 |
Msa1086930 | MtrunA17_Chr3g0136911 | 26.498 | 317 | 186 | 9 | 17 | 308 | 887 | 1181 | 7.13e-21 | 93.6 |
Msa1086930 | MtrunA17_Chr3g0142431 | 27.381 | 252 | 146 | 6 | 79 | 308 | 2 | 238 | 7.66e-19 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1086930 | ATCG00190.1 | 93.538 | 325 | 21 | 0 | 1 | 325 | 748 | 1072 | 0.0 | 635 |
Msa1086930 | AT4G21710.1 | 30.952 | 252 | 144 | 4 | 70 | 306 | 936 | 1172 | 1.80e-33 | 131 |
Msa1086930 | AT5G45140.2 | 30.916 | 262 | 156 | 2 | 58 | 304 | 899 | 1150 | 3.34e-32 | 127 |
Msa1086930 | AT5G45140.1 | 30.916 | 262 | 156 | 2 | 58 | 304 | 899 | 1150 | 3.34e-32 | 127 |
Msa1086930 | AT1G29940.1 | 30.172 | 232 | 148 | 4 | 43 | 267 | 867 | 1091 | 2.75e-26 | 110 |
Msa1086930 | AT3G23780.1 | 25.460 | 326 | 191 | 8 | 17 | 309 | 860 | 1166 | 6.60e-19 | 88.2 |
Msa1086930 | AT3G23780.2 | 25.460 | 326 | 191 | 8 | 17 | 309 | 860 | 1166 | 6.60e-19 | 88.2 |
Msa1086930 | AT3G18090.1 | 25.705 | 319 | 200 | 7 | 17 | 309 | 742 | 1049 | 8.32e-19 | 87.8 |
Find 93 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGTTTCGCCCTTCCTTTA+AGG | 0.204769 | 7_2:+87620304 | None:intergenic |
GTTACACAACAACCCCTTAA+AGG | 0.212213 | 7_2:-87620318 | Msa1086930:CDS |
TGGATTCGATGTTTGTTTAC+TGG | 0.222331 | 7_2:+87620503 | None:intergenic |
ATATATATATGAATCGTTTC+TGG | 0.228166 | 7_2:+87620822 | None:intergenic |
TTTGAACAGCCTGTTATAAT+AGG | 0.245428 | 7_2:-87620417 | Msa1086930:CDS |
TGAATTAATTTCAAGATATA+AGG | 0.248171 | 7_2:+87620390 | None:intergenic |
ACGAGCTATACTTGGGATTC+AGG | 0.269809 | 7_2:-87620946 | Msa1086930:CDS |
GGTCTTCCATCTTGCAAATA+AGG | 0.291965 | 7_2:+87620705 | None:intergenic |
TTGTTTCGCCCTTCCTTTAA+GGG | 0.292882 | 7_2:+87620305 | None:intergenic |
ATTCGTGAGGGTACCCCTAA+TGG | 0.306675 | 7_2:+87620663 | None:intergenic |
TCAAATATTCCGCTCTTTCC+CGG | 0.314064 | 7_2:+87620459 | None:intergenic |
GGAATATTTGATGGAAGAAC+AGG | 0.334674 | 7_2:-87620447 | Msa1086930:CDS |
AATGAATGTAGGACAGATAT+TGG | 0.340082 | 7_2:-87620643 | Msa1086930:CDS |
AAACTTCCTTCCTTTGAATC+TGG | 0.340714 | 7_2:+87620034 | None:intergenic |
TCTGGAGCATCCACAGGTTT+AGG | 0.340865 | 7_2:+87620135 | None:intergenic |
ACGAGCAATCGAAAAGATTC+TGG | 0.342745 | 7_2:+87620117 | None:intergenic |
ATATGGTCTTCAACCCATTA+GGG | 0.343228 | 7_2:-87620677 | Msa1086930:CDS |
GTACTCGGAACTACGATTAT+TGG | 0.356639 | 7_2:-87620168 | Msa1086930:CDS |
CGTTCGAGAACTACGATCTT+TGG | 0.364953 | 7_2:-87620097 | Msa1086930:CDS |
TCCGCTCTTTCCCGGATACT+CGG | 0.379405 | 7_2:+87620467 | None:intergenic |
GAATGTTCACTCGGATTAGC+TGG | 0.386652 | 7_2:-87620621 | Msa1086930:CDS |
GATATTTGAACCCGAGTATC+CGG | 0.389575 | 7_2:-87620478 | Msa1086930:CDS |
GATATGGTCTTCAACCCATT+AGG | 0.395616 | 7_2:-87620678 | Msa1086930:CDS |
GTTTGGGCGCTCGAGGGGTT+CGG | 0.396040 | 7_2:-87620255 | Msa1086930:CDS |
AGATGGAAGACCCGTTGATA+TGG | 0.398344 | 7_2:-87620694 | Msa1086930:CDS |
AGATTATTACGAGCTATACT+TGG | 0.409704 | 7_2:-87620954 | Msa1086930:CDS |
ATGGAGGTTTGGGCGCTCGA+GGG | 0.426714 | 7_2:-87620261 | Msa1086930:CDS |
GCCGGGAGACATGGAAATAA+AGG | 0.429982 | 7_2:-87620762 | Msa1086930:CDS |
TTCGTGAGGGTACCCCTAAT+GGG | 0.434009 | 7_2:+87620664 | None:intergenic |
ATTATAACAGGCTGTTCAAA+AGG | 0.436541 | 7_2:+87620420 | None:intergenic |
AGGACAACGGGTAGGCGAAA+TGG | 0.436703 | 7_2:-87620280 | Msa1086930:CDS |
ACTTGTCTAAAACTACCTAT+AGG | 0.437083 | 7_2:-87620906 | Msa1086930:CDS |
ACCTTTATTTCCATGTCTCC+CGG | 0.449391 | 7_2:+87620761 | None:intergenic |
ACTCGGCCCCTACCACCTAT+AGG | 0.455800 | 7_2:+87620891 | None:intergenic |
AATGGAGGTTTGGGCGCTCG+AGG | 0.461267 | 7_2:-87620262 | Msa1086930:CDS |
GCTCGTAATAATCTATCTTC+CGG | 0.462719 | 7_2:+87620963 | None:intergenic |
GGTAGGCGAAATGGAGGTTT+GGG | 0.465784 | 7_2:-87620271 | Msa1086930:CDS |
GGGTAGGCGAAATGGAGGTT+TGG | 0.465926 | 7_2:-87620272 | Msa1086930:CDS |
GGAAAGAGCGGAATATTTGA+TGG | 0.469164 | 7_2:-87620456 | Msa1086930:CDS |
CCGCTCTTTCCCGGATACTC+GGG | 0.478316 | 7_2:+87620468 | None:intergenic |
GGCGAAACAAGGAGGACAAC+GGG | 0.481846 | 7_2:-87620292 | Msa1086930:CDS |
TGTTCATATCTCTCATCAAA+AGG | 0.491842 | 7_2:+87620567 | None:intergenic |
CAAGTTGATGATAAAATACA+TGG | 0.502523 | 7_2:-87620366 | Msa1086930:CDS |
TGGAGGTTTGGGCGCTCGAG+GGG | 0.505858 | 7_2:-87620260 | Msa1086930:CDS |
AGAACTACGATCTTTGGCTC+TGG | 0.513829 | 7_2:-87620091 | Msa1086930:CDS |
GATATGCCTTATTTGCAAGA+TGG | 0.518600 | 7_2:-87620711 | Msa1086930:CDS |
GTAAACAAACATCGAATCCA+TGG | 0.519391 | 7_2:-87620500 | Msa1086930:CDS |
CAGAAACGTGAAATTAAAGT+AGG | 0.520965 | 7_2:-87620795 | Msa1086930:CDS |
AAAGTAGGTGATAAAGTGGC+CGG | 0.529519 | 7_2:-87620780 | Msa1086930:CDS |
AAAACTACCTATAGGTGGTA+GGG | 0.530153 | 7_2:-87620898 | Msa1086930:CDS |
AAAGATTCTGGAGCATCCAC+AGG | 0.531781 | 7_2:+87620129 | None:intergenic |
GATAAAGTGGCCGGGAGACA+TGG | 0.532845 | 7_2:-87620771 | Msa1086930:CDS |
AGAAAGACTTCCAGATTCAA+AGG | 0.533242 | 7_2:-87620044 | Msa1086930:CDS |
GGGTTGAAGACCATATCAAC+GGG | 0.535156 | 7_2:+87620684 | None:intergenic |
CACAACAACCCCTTAAAGGA+AGG | 0.535519 | 7_2:-87620314 | Msa1086930:CDS |
TAAAACTACCTATAGGTGGT+AGG | 0.538804 | 7_2:-87620899 | Msa1086930:CDS |
TAATCTATCTTCCGGAGCAT+AGG | 0.540322 | 7_2:+87620971 | None:intergenic |
TCTATCTTCCGGAGCATAGG+AGG | 0.540370 | 7_2:+87620974 | None:intergenic |
TACTCGGGTTCAAATATCCA+TGG | 0.546454 | 7_2:+87620483 | None:intergenic |
CAGATATTGGAATGTTCACT+CGG | 0.551609 | 7_2:-87620630 | Msa1086930:CDS |
GATTATTACGAGCTATACTT+GGG | 0.558504 | 7_2:-87620953 | Msa1086930:CDS |
GCCGAGTTATTGATGTGAGA+TGG | 0.559021 | 7_2:-87620875 | Msa1086930:CDS |
CTCGGAACTACGATTATTGG+AGG | 0.559077 | 7_2:-87620165 | Msa1086930:CDS |
AGACTTCCAGATTCAAAGGA+AGG | 0.563377 | 7_2:-87620040 | Msa1086930:CDS |
GGAAGTCTTTCTCAGATACA+AGG | 0.565963 | 7_2:+87620055 | None:intergenic |
AACAAGTGCATAATGTCCAC+TGG | 0.566338 | 7_2:+87620338 | None:intergenic |
TGTTTCGCCCTTCCTTTAAG+GGG | 0.567625 | 7_2:+87620306 | None:intergenic |
AATGTTCACTCGGATTAGCT+GGG | 0.569063 | 7_2:-87620620 | Msa1086930:CDS |
GAAAGAATCCTCCTATGCTC+CGG | 0.570879 | 7_2:-87620982 | Msa1086930:CDS |
CTTAAAGGAAGGGCGAAACA+AGG | 0.579473 | 7_2:-87620303 | Msa1086930:CDS |
AATTAAAGTAGGTGATAAAG+TGG | 0.581077 | 7_2:-87620784 | Msa1086930:CDS |
ATATTTGAACCCGAGTATCC+GGG | 0.581389 | 7_2:-87620477 | Msa1086930:CDS |
CTGTCCTACATTCATTCGTG+AGG | 0.583153 | 7_2:+87620650 | None:intergenic |
CCCGAGTATCCGGGAAAGAG+CGG | 0.584519 | 7_2:-87620468 | Msa1086930:CDS |
AAGTAGGTGATAAAGTGGCC+GGG | 0.597954 | 7_2:-87620779 | Msa1086930:CDS |
GGGCGAAACAAGGAGGACAA+CGG | 0.598993 | 7_2:-87620293 | Msa1086930:CDS |
TCCATCTCACATCAATAACT+CGG | 0.602104 | 7_2:+87620874 | None:intergenic |
TGTCCTACATTCATTCGTGA+GGG | 0.611498 | 7_2:+87620651 | None:intergenic |
AAAATACATGGACGTTCCAG+TGG | 0.614997 | 7_2:-87620354 | Msa1086930:CDS |
AAACTACCTATAGGTGGTAG+GGG | 0.618823 | 7_2:-87620897 | Msa1086930:CDS |
TGATGAGAGATATGAACAGG+AGG | 0.620223 | 7_2:-87620562 | Msa1086930:CDS |
GTACCCTCACGAATGAATGT+AGG | 0.622385 | 7_2:-87620654 | Msa1086930:CDS |
TGGGTTGAAGACCATATCAA+CGG | 0.622611 | 7_2:+87620683 | None:intergenic |
AAACAAGGAGGACAACGGGT+AGG | 0.626804 | 7_2:-87620288 | Msa1086930:CDS |
ACAACAACCCCTTAAAGGAA+GGG | 0.636584 | 7_2:-87620313 | Msa1086930:CDS |
AGGAACAATACCTAAACCTG+TGG | 0.656849 | 7_2:-87620145 | Msa1086930:CDS |
AAAGCTCGTCAAGAAGTACT+CGG | 0.659322 | 7_2:-87620183 | Msa1086930:CDS |
ACAACGGGTAGGCGAAATGG+AGG | 0.659407 | 7_2:-87620277 | Msa1086930:CDS |
TATGGTCTTCAACCCATTAG+GGG | 0.670295 | 7_2:-87620676 | Msa1086930:CDS |
GATTCAGGTATCGACCTCAA+AGG | 0.672007 | 7_2:-87620931 | Msa1086930:CDS |
TGTCTAAAACTACCTATAGG+TGG | 0.673297 | 7_2:-87620903 | Msa1086930:CDS |
GAATATTTGATGGAAGAACA+GGG | 0.689025 | 7_2:-87620446 | Msa1086930:CDS |
AAAGGAAGGGCGAAACAAGG+AGG | 0.708508 | 7_2:-87620300 | Msa1086930:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAATTAATTTCAAGATATA+AGG | + | chr7_2:87620632-87620651 | None:intergenic | 15.0% |
!! | TGAATTAATTTCAAGATATA+AGG | + | chr7_2:87620632-87620651 | None:intergenic | 15.0% |
!! | ATATATATATGAATCGTTTC+TGG | + | chr7_2:87620200-87620219 | None:intergenic | 20.0% |
!! | ATATATATATGAATCGTTTC+TGG | + | chr7_2:87620200-87620219 | None:intergenic | 20.0% |
! | AATTAAAGTAGGTGATAAAG+TGG | - | chr7_2:87620235-87620254 | Msa1086930:CDS | 25.0% |
!! | TAAGGTTTTCCTATTATAAC+AGG | + | chr7_2:87620614-87620633 | None:intergenic | 25.0% |
!!! | CAAGTTGATGATAAAATACA+TGG | - | chr7_2:87620653-87620672 | Msa1086930:CDS | 25.0% |
! | AATTAAAGTAGGTGATAAAG+TGG | - | chr7_2:87620235-87620254 | Msa1086930:CDS | 25.0% |
!! | TAAGGTTTTCCTATTATAAC+AGG | + | chr7_2:87620614-87620633 | None:intergenic | 25.0% |
!!! | CAAGTTGATGATAAAATACA+TGG | - | chr7_2:87620653-87620672 | Msa1086930:CDS | 25.0% |
AGATTATTACGAGCTATACT+TGG | - | chr7_2:87620065-87620084 | Msa1086930:CDS | 30.0% | |
GATTATTACGAGCTATACTT+GGG | - | chr7_2:87620066-87620085 | Msa1086930:CDS | 30.0% | |
! | TTTTAGACAAGTTTCCTTTG+AGG | + | chr7_2:87620105-87620124 | None:intergenic | 30.0% |
! | ACTTGTCTAAAACTACCTAT+AGG | - | chr7_2:87620113-87620132 | Msa1086930:CDS | 30.0% |
CAGAAACGTGAAATTAAAGT+AGG | - | chr7_2:87620224-87620243 | Msa1086930:CDS | 30.0% | |
! | TTCAAAGATTTTGTCTAGAC+AGG | - | chr7_2:87620286-87620305 | Msa1086930:CDS | 30.0% |
AATGAATGTAGGACAGATAT+TGG | - | chr7_2:87620376-87620395 | Msa1086930:CDS | 30.0% | |
TGTTCATATCTCTCATCAAA+AGG | + | chr7_2:87620455-87620474 | None:intergenic | 30.0% | |
! | TTTTGATGAGAGATATGAAC+AGG | - | chr7_2:87620454-87620473 | Msa1086930:CDS | 30.0% |
! | TTCAGAAAACACAAGTTTTC+TGG | + | chr7_2:87620486-87620505 | None:intergenic | 30.0% |
GAATATTTGATGGAAGAACA+GGG | - | chr7_2:87620573-87620592 | Msa1086930:CDS | 30.0% | |
ATTATAACAGGCTGTTCAAA+AGG | + | chr7_2:87620602-87620621 | None:intergenic | 30.0% | |
TTTGAACAGCCTGTTATAAT+AGG | - | chr7_2:87620602-87620621 | Msa1086930:CDS | 30.0% | |
AGATTATTACGAGCTATACT+TGG | - | chr7_2:87620065-87620084 | Msa1086930:CDS | 30.0% | |
GATTATTACGAGCTATACTT+GGG | - | chr7_2:87620066-87620085 | Msa1086930:CDS | 30.0% | |
! | TTTTAGACAAGTTTCCTTTG+AGG | + | chr7_2:87620105-87620124 | None:intergenic | 30.0% |
! | ACTTGTCTAAAACTACCTAT+AGG | - | chr7_2:87620113-87620132 | Msa1086930:CDS | 30.0% |
CAGAAACGTGAAATTAAAGT+AGG | - | chr7_2:87620224-87620243 | Msa1086930:CDS | 30.0% | |
! | TTCAAAGATTTTGTCTAGAC+AGG | - | chr7_2:87620286-87620305 | Msa1086930:CDS | 30.0% |
AATGAATGTAGGACAGATAT+TGG | - | chr7_2:87620376-87620395 | Msa1086930:CDS | 30.0% | |
TGTTCATATCTCTCATCAAA+AGG | + | chr7_2:87620455-87620474 | None:intergenic | 30.0% | |
! | TTTTGATGAGAGATATGAAC+AGG | - | chr7_2:87620454-87620473 | Msa1086930:CDS | 30.0% |
! | TTCAGAAAACACAAGTTTTC+TGG | + | chr7_2:87620486-87620505 | None:intergenic | 30.0% |
GAATATTTGATGGAAGAACA+GGG | - | chr7_2:87620573-87620592 | Msa1086930:CDS | 30.0% | |
ATTATAACAGGCTGTTCAAA+AGG | + | chr7_2:87620602-87620621 | None:intergenic | 30.0% | |
TTTGAACAGCCTGTTATAAT+AGG | - | chr7_2:87620602-87620621 | Msa1086930:CDS | 30.0% | |
GCTCGTAATAATCTATCTTC+CGG | + | chr7_2:87620059-87620078 | None:intergenic | 35.0% | |
! | TGTCTAAAACTACCTATAGG+TGG | - | chr7_2:87620116-87620135 | Msa1086930:CDS | 35.0% |
TAAAACTACCTATAGGTGGT+AGG | - | chr7_2:87620120-87620139 | Msa1086930:CDS | 35.0% | |
AAAACTACCTATAGGTGGTA+GGG | - | chr7_2:87620121-87620140 | Msa1086930:CDS | 35.0% | |
TCCATCTCACATCAATAACT+CGG | + | chr7_2:87620148-87620167 | None:intergenic | 35.0% | |
AGATGGATCCAAAAAAAAGC+AGG | - | chr7_2:87620161-87620180 | Msa1086930:CDS | 35.0% | |
!!! | AGCTAGAACCTGCTTTTTTT+TGG | + | chr7_2:87620172-87620191 | None:intergenic | 35.0% |
!! | GATATGCCTTATTTGCAAGA+TGG | - | chr7_2:87620308-87620327 | Msa1086930:CDS | 35.0% |
ATATGGTCTTCAACCCATTA+GGG | - | chr7_2:87620342-87620361 | Msa1086930:CDS | 35.0% | |
CAGATATTGGAATGTTCACT+CGG | - | chr7_2:87620389-87620408 | Msa1086930:CDS | 35.0% | |
TGGATTCGATGTTTGTTTAC+TGG | + | chr7_2:87620519-87620538 | None:intergenic | 35.0% | |
GTAAACAAACATCGAATCCA+TGG | - | chr7_2:87620519-87620538 | Msa1086930:CDS | 35.0% | |
GGAATATTTGATGGAAGAAC+AGG | - | chr7_2:87620572-87620591 | Msa1086930:CDS | 35.0% | |
AGAAAGACTTCCAGATTCAA+AGG | - | chr7_2:87620975-87620994 | Msa1086930:CDS | 35.0% | |
AAACTTCCTTCCTTTGAATC+TGG | + | chr7_2:87620988-87621007 | None:intergenic | 35.0% | |
GCTCGTAATAATCTATCTTC+CGG | + | chr7_2:87620059-87620078 | None:intergenic | 35.0% | |
! | TGTCTAAAACTACCTATAGG+TGG | - | chr7_2:87620116-87620135 | Msa1086930:CDS | 35.0% |
TAAAACTACCTATAGGTGGT+AGG | - | chr7_2:87620120-87620139 | Msa1086930:CDS | 35.0% | |
AAAACTACCTATAGGTGGTA+GGG | - | chr7_2:87620121-87620140 | Msa1086930:CDS | 35.0% | |
TCCATCTCACATCAATAACT+CGG | + | chr7_2:87620148-87620167 | None:intergenic | 35.0% | |
AGATGGATCCAAAAAAAAGC+AGG | - | chr7_2:87620161-87620180 | Msa1086930:CDS | 35.0% | |
!!! | AGCTAGAACCTGCTTTTTTT+TGG | + | chr7_2:87620172-87620191 | None:intergenic | 35.0% |
!! | GATATGCCTTATTTGCAAGA+TGG | - | chr7_2:87620308-87620327 | Msa1086930:CDS | 35.0% |
ATATGGTCTTCAACCCATTA+GGG | - | chr7_2:87620342-87620361 | Msa1086930:CDS | 35.0% | |
CAGATATTGGAATGTTCACT+CGG | - | chr7_2:87620389-87620408 | Msa1086930:CDS | 35.0% | |
TGGATTCGATGTTTGTTTAC+TGG | + | chr7_2:87620519-87620538 | None:intergenic | 35.0% | |
GTAAACAAACATCGAATCCA+TGG | - | chr7_2:87620519-87620538 | Msa1086930:CDS | 35.0% | |
GGAATATTTGATGGAAGAAC+AGG | - | chr7_2:87620572-87620591 | Msa1086930:CDS | 35.0% | |
AGAAAGACTTCCAGATTCAA+AGG | - | chr7_2:87620975-87620994 | Msa1086930:CDS | 35.0% | |
AAACTTCCTTCCTTTGAATC+TGG | + | chr7_2:87620988-87621007 | None:intergenic | 35.0% | |
TAATCTATCTTCCGGAGCAT+AGG | + | chr7_2:87620051-87620070 | None:intergenic | 40.0% | |
AAACTACCTATAGGTGGTAG+GGG | - | chr7_2:87620122-87620141 | Msa1086930:CDS | 40.0% | |
AAAGTAGGTGATAAAGTGGC+CGG | - | chr7_2:87620239-87620258 | Msa1086930:CDS | 40.0% | |
! | ACCTTTATTTCCATGTCTCC+CGG | + | chr7_2:87620261-87620280 | None:intergenic | 40.0% |
GGTCTTCCATCTTGCAAATA+AGG | + | chr7_2:87620317-87620336 | None:intergenic | 40.0% | |
! | TGGGTTGAAGACCATATCAA+CGG | + | chr7_2:87620339-87620358 | None:intergenic | 40.0% |
GATATGGTCTTCAACCCATT+AGG | - | chr7_2:87620341-87620360 | Msa1086930:CDS | 40.0% | |
TATGGTCTTCAACCCATTAG+GGG | - | chr7_2:87620343-87620362 | Msa1086930:CDS | 40.0% | |
TGTCCTACATTCATTCGTGA+GGG | + | chr7_2:87620371-87620390 | None:intergenic | 40.0% | |
!! | AATGTTCACTCGGATTAGCT+GGG | - | chr7_2:87620399-87620418 | Msa1086930:CDS | 40.0% |
TGATGAGAGATATGAACAGG+AGG | - | chr7_2:87620457-87620476 | Msa1086930:CDS | 40.0% | |
TACTCGGGTTCAAATATCCA+TGG | + | chr7_2:87620539-87620558 | None:intergenic | 40.0% | |
GATATTTGAACCCGAGTATC+CGG | - | chr7_2:87620541-87620560 | Msa1086930:CDS | 40.0% | |
ATATTTGAACCCGAGTATCC+GGG | - | chr7_2:87620542-87620561 | Msa1086930:CDS | 40.0% | |
TCAAATATTCCGCTCTTTCC+CGG | + | chr7_2:87620563-87620582 | None:intergenic | 40.0% | |
GGAAAGAGCGGAATATTTGA+TGG | - | chr7_2:87620563-87620582 | Msa1086930:CDS | 40.0% | |
AAAATACATGGACGTTCCAG+TGG | - | chr7_2:87620665-87620684 | Msa1086930:CDS | 40.0% | |
AACAAGTGCATAATGTCCAC+TGG | + | chr7_2:87620684-87620703 | None:intergenic | 40.0% | |
GTTACACAACAACCCCTTAA+AGG | - | chr7_2:87620701-87620720 | Msa1086930:CDS | 40.0% | |
ACAACAACCCCTTAAAGGAA+GGG | - | chr7_2:87620706-87620725 | Msa1086930:CDS | 40.0% | |
TTGTTTCGCCCTTCCTTTAA+GGG | + | chr7_2:87620717-87620736 | None:intergenic | 40.0% | |
!! | AAAGCTCGTCAAGAAGTACT+CGG | - | chr7_2:87620836-87620855 | Msa1086930:CDS | 40.0% |
GTACTCGGAACTACGATTAT+TGG | - | chr7_2:87620851-87620870 | Msa1086930:CDS | 40.0% | |
AGGAACAATACCTAAACCTG+TGG | - | chr7_2:87620874-87620893 | Msa1086930:CDS | 40.0% | |
ACGAGCAATCGAAAAGATTC+TGG | + | chr7_2:87620905-87620924 | None:intergenic | 40.0% | |
GGAAGTCTTTCTCAGATACA+AGG | + | chr7_2:87620967-87620986 | None:intergenic | 40.0% | |
AGACTTCCAGATTCAAAGGA+AGG | - | chr7_2:87620979-87620998 | Msa1086930:CDS | 40.0% | |
TAATCTATCTTCCGGAGCAT+AGG | + | chr7_2:87620051-87620070 | None:intergenic | 40.0% | |
AAACTACCTATAGGTGGTAG+GGG | - | chr7_2:87620122-87620141 | Msa1086930:CDS | 40.0% | |
AAAGTAGGTGATAAAGTGGC+CGG | - | chr7_2:87620239-87620258 | Msa1086930:CDS | 40.0% | |
! | ACCTTTATTTCCATGTCTCC+CGG | + | chr7_2:87620261-87620280 | None:intergenic | 40.0% |
GGTCTTCCATCTTGCAAATA+AGG | + | chr7_2:87620317-87620336 | None:intergenic | 40.0% | |
! | TGGGTTGAAGACCATATCAA+CGG | + | chr7_2:87620339-87620358 | None:intergenic | 40.0% |
GATATGGTCTTCAACCCATT+AGG | - | chr7_2:87620341-87620360 | Msa1086930:CDS | 40.0% | |
TATGGTCTTCAACCCATTAG+GGG | - | chr7_2:87620343-87620362 | Msa1086930:CDS | 40.0% | |
TGTCCTACATTCATTCGTGA+GGG | + | chr7_2:87620371-87620390 | None:intergenic | 40.0% | |
!! | AATGTTCACTCGGATTAGCT+GGG | - | chr7_2:87620399-87620418 | Msa1086930:CDS | 40.0% |
TGATGAGAGATATGAACAGG+AGG | - | chr7_2:87620457-87620476 | Msa1086930:CDS | 40.0% | |
TACTCGGGTTCAAATATCCA+TGG | + | chr7_2:87620539-87620558 | None:intergenic | 40.0% | |
GATATTTGAACCCGAGTATC+CGG | - | chr7_2:87620541-87620560 | Msa1086930:CDS | 40.0% | |
ATATTTGAACCCGAGTATCC+GGG | - | chr7_2:87620542-87620561 | Msa1086930:CDS | 40.0% | |
TCAAATATTCCGCTCTTTCC+CGG | + | chr7_2:87620563-87620582 | None:intergenic | 40.0% | |
GGAAAGAGCGGAATATTTGA+TGG | - | chr7_2:87620563-87620582 | Msa1086930:CDS | 40.0% | |
AAAATACATGGACGTTCCAG+TGG | - | chr7_2:87620665-87620684 | Msa1086930:CDS | 40.0% | |
AACAAGTGCATAATGTCCAC+TGG | + | chr7_2:87620684-87620703 | None:intergenic | 40.0% | |
GTTACACAACAACCCCTTAA+AGG | - | chr7_2:87620701-87620720 | Msa1086930:CDS | 40.0% | |
ACAACAACCCCTTAAAGGAA+GGG | - | chr7_2:87620706-87620725 | Msa1086930:CDS | 40.0% | |
TTGTTTCGCCCTTCCTTTAA+GGG | + | chr7_2:87620717-87620736 | None:intergenic | 40.0% | |
!! | AAAGCTCGTCAAGAAGTACT+CGG | - | chr7_2:87620836-87620855 | Msa1086930:CDS | 40.0% |
GTACTCGGAACTACGATTAT+TGG | - | chr7_2:87620851-87620870 | Msa1086930:CDS | 40.0% | |
AGGAACAATACCTAAACCTG+TGG | - | chr7_2:87620874-87620893 | Msa1086930:CDS | 40.0% | |
ACGAGCAATCGAAAAGATTC+TGG | + | chr7_2:87620905-87620924 | None:intergenic | 40.0% | |
GGAAGTCTTTCTCAGATACA+AGG | + | chr7_2:87620967-87620986 | None:intergenic | 40.0% | |
AGACTTCCAGATTCAAAGGA+AGG | - | chr7_2:87620979-87620998 | Msa1086930:CDS | 40.0% | |
GAAAGAATCCTCCTATGCTC+CGG | - | chr7_2:87620037-87620056 | Msa1086930:CDS | 45.0% | |
ACGAGCTATACTTGGGATTC+AGG | - | chr7_2:87620073-87620092 | Msa1086930:CDS | 45.0% | |
!! | GATTCAGGTATCGACCTCAA+AGG | - | chr7_2:87620088-87620107 | Msa1086930:CDS | 45.0% |
GCCGAGTTATTGATGTGAGA+TGG | - | chr7_2:87620144-87620163 | Msa1086930:CDS | 45.0% | |
AAGTAGGTGATAAAGTGGCC+GGG | - | chr7_2:87620240-87620259 | Msa1086930:CDS | 45.0% | |
AGATGGAAGACCCGTTGATA+TGG | - | chr7_2:87620325-87620344 | Msa1086930:CDS | 45.0% | |
GGGTTGAAGACCATATCAAC+GGG | + | chr7_2:87620338-87620357 | None:intergenic | 45.0% | |
GTACCCTCACGAATGAATGT+AGG | - | chr7_2:87620365-87620384 | Msa1086930:CDS | 45.0% | |
CTGTCCTACATTCATTCGTG+AGG | + | chr7_2:87620372-87620391 | None:intergenic | 45.0% | |
!! | GAATGTTCACTCGGATTAGC+TGG | - | chr7_2:87620398-87620417 | Msa1086930:CDS | 45.0% |
CACAACAACCCCTTAAAGGA+AGG | - | chr7_2:87620705-87620724 | Msa1086930:CDS | 45.0% | |
TGTTTCGCCCTTCCTTTAAG+GGG | + | chr7_2:87620716-87620735 | None:intergenic | 45.0% | |
CTTGTTTCGCCCTTCCTTTA+AGG | + | chr7_2:87620718-87620737 | None:intergenic | 45.0% | |
CTTAAAGGAAGGGCGAAACA+AGG | - | chr7_2:87620716-87620735 | Msa1086930:CDS | 45.0% | |
CTCGGAACTACGATTATTGG+AGG | - | chr7_2:87620854-87620873 | Msa1086930:CDS | 45.0% | |
!! | AAAGATTCTGGAGCATCCAC+AGG | + | chr7_2:87620893-87620912 | None:intergenic | 45.0% |
CGTTCGAGAACTACGATCTT+TGG | - | chr7_2:87620922-87620941 | Msa1086930:CDS | 45.0% | |
! | AGAACTACGATCTTTGGCTC+TGG | - | chr7_2:87620928-87620947 | Msa1086930:CDS | 45.0% |
GAAAGAATCCTCCTATGCTC+CGG | - | chr7_2:87620037-87620056 | Msa1086930:CDS | 45.0% | |
ACGAGCTATACTTGGGATTC+AGG | - | chr7_2:87620073-87620092 | Msa1086930:CDS | 45.0% | |
!! | GATTCAGGTATCGACCTCAA+AGG | - | chr7_2:87620088-87620107 | Msa1086930:CDS | 45.0% |
GCCGAGTTATTGATGTGAGA+TGG | - | chr7_2:87620144-87620163 | Msa1086930:CDS | 45.0% | |
AAGTAGGTGATAAAGTGGCC+GGG | - | chr7_2:87620240-87620259 | Msa1086930:CDS | 45.0% | |
AGATGGAAGACCCGTTGATA+TGG | - | chr7_2:87620325-87620344 | Msa1086930:CDS | 45.0% | |
GGGTTGAAGACCATATCAAC+GGG | + | chr7_2:87620338-87620357 | None:intergenic | 45.0% | |
GTACCCTCACGAATGAATGT+AGG | - | chr7_2:87620365-87620384 | Msa1086930:CDS | 45.0% | |
CTGTCCTACATTCATTCGTG+AGG | + | chr7_2:87620372-87620391 | None:intergenic | 45.0% | |
!! | GAATGTTCACTCGGATTAGC+TGG | - | chr7_2:87620398-87620417 | Msa1086930:CDS | 45.0% |
CACAACAACCCCTTAAAGGA+AGG | - | chr7_2:87620705-87620724 | Msa1086930:CDS | 45.0% | |
TGTTTCGCCCTTCCTTTAAG+GGG | + | chr7_2:87620716-87620735 | None:intergenic | 45.0% | |
CTTGTTTCGCCCTTCCTTTA+AGG | + | chr7_2:87620718-87620737 | None:intergenic | 45.0% | |
CTTAAAGGAAGGGCGAAACA+AGG | - | chr7_2:87620716-87620735 | Msa1086930:CDS | 45.0% | |
CTCGGAACTACGATTATTGG+AGG | - | chr7_2:87620854-87620873 | Msa1086930:CDS | 45.0% | |
!! | AAAGATTCTGGAGCATCCAC+AGG | + | chr7_2:87620893-87620912 | None:intergenic | 45.0% |
CGTTCGAGAACTACGATCTT+TGG | - | chr7_2:87620922-87620941 | Msa1086930:CDS | 45.0% | |
! | AGAACTACGATCTTTGGCTC+TGG | - | chr7_2:87620928-87620947 | Msa1086930:CDS | 45.0% |
TCTATCTTCCGGAGCATAGG+AGG | + | chr7_2:87620048-87620067 | None:intergenic | 50.0% | |
GCCGGGAGACATGGAAATAA+AGG | - | chr7_2:87620257-87620276 | Msa1086930:CDS | 50.0% | |
!! | TTCGTGAGGGTACCCCTAAT+GGG | + | chr7_2:87620358-87620377 | None:intergenic | 50.0% |
!! | ATTCGTGAGGGTACCCCTAA+TGG | + | chr7_2:87620359-87620378 | None:intergenic | 50.0% |
AAAGGAAGGGCGAAACAAGG+AGG | - | chr7_2:87620719-87620738 | Msa1086930:CDS | 50.0% | |
AAACAAGGAGGACAACGGGT+AGG | - | chr7_2:87620731-87620750 | Msa1086930:CDS | 50.0% | |
GGTAGGCGAAATGGAGGTTT+GGG | - | chr7_2:87620748-87620767 | Msa1086930:CDS | 50.0% | |
! | TCTGGAGCATCCACAGGTTT+AGG | + | chr7_2:87620887-87620906 | None:intergenic | 50.0% |
TCTATCTTCCGGAGCATAGG+AGG | + | chr7_2:87620048-87620067 | None:intergenic | 50.0% | |
GCCGGGAGACATGGAAATAA+AGG | - | chr7_2:87620257-87620276 | Msa1086930:CDS | 50.0% | |
!! | TTCGTGAGGGTACCCCTAAT+GGG | + | chr7_2:87620358-87620377 | None:intergenic | 50.0% |
!! | ATTCGTGAGGGTACCCCTAA+TGG | + | chr7_2:87620359-87620378 | None:intergenic | 50.0% |
AAAGGAAGGGCGAAACAAGG+AGG | - | chr7_2:87620719-87620738 | Msa1086930:CDS | 50.0% | |
AAACAAGGAGGACAACGGGT+AGG | - | chr7_2:87620731-87620750 | Msa1086930:CDS | 50.0% | |
GGTAGGCGAAATGGAGGTTT+GGG | - | chr7_2:87620748-87620767 | Msa1086930:CDS | 50.0% | |
! | TCTGGAGCATCCACAGGTTT+AGG | + | chr7_2:87620887-87620906 | None:intergenic | 50.0% |
GATAAAGTGGCCGGGAGACA+TGG | - | chr7_2:87620248-87620267 | Msa1086930:CDS | 55.0% | |
TCCGCTCTTTCCCGGATACT+CGG | + | chr7_2:87620555-87620574 | None:intergenic | 55.0% | |
GGGCGAAACAAGGAGGACAA+CGG | - | chr7_2:87620726-87620745 | Msa1086930:CDS | 55.0% | |
GGCGAAACAAGGAGGACAAC+GGG | - | chr7_2:87620727-87620746 | Msa1086930:CDS | 55.0% | |
AGGACAACGGGTAGGCGAAA+TGG | - | chr7_2:87620739-87620758 | Msa1086930:CDS | 55.0% | |
ACAACGGGTAGGCGAAATGG+AGG | - | chr7_2:87620742-87620761 | Msa1086930:CDS | 55.0% | |
GGGTAGGCGAAATGGAGGTT+TGG | - | chr7_2:87620747-87620766 | Msa1086930:CDS | 55.0% | |
GATAAAGTGGCCGGGAGACA+TGG | - | chr7_2:87620248-87620267 | Msa1086930:CDS | 55.0% | |
TCCGCTCTTTCCCGGATACT+CGG | + | chr7_2:87620555-87620574 | None:intergenic | 55.0% | |
GGGCGAAACAAGGAGGACAA+CGG | - | chr7_2:87620726-87620745 | Msa1086930:CDS | 55.0% | |
GGCGAAACAAGGAGGACAAC+GGG | - | chr7_2:87620727-87620746 | Msa1086930:CDS | 55.0% | |
AGGACAACGGGTAGGCGAAA+TGG | - | chr7_2:87620739-87620758 | Msa1086930:CDS | 55.0% | |
ACAACGGGTAGGCGAAATGG+AGG | - | chr7_2:87620742-87620761 | Msa1086930:CDS | 55.0% | |
GGGTAGGCGAAATGGAGGTT+TGG | - | chr7_2:87620747-87620766 | Msa1086930:CDS | 55.0% | |
ACTCGGCCCCTACCACCTAT+AGG | + | chr7_2:87620131-87620150 | None:intergenic | 60.0% | |
CCGCTCTTTCCCGGATACTC+GGG | + | chr7_2:87620554-87620573 | None:intergenic | 60.0% | |
CCCGAGTATCCGGGAAAGAG+CGG | - | chr7_2:87620551-87620570 | Msa1086930:CDS | 60.0% | |
AATGGAGGTTTGGGCGCTCG+AGG | - | chr7_2:87620757-87620776 | Msa1086930:CDS | 60.0% | |
ATGGAGGTTTGGGCGCTCGA+GGG | - | chr7_2:87620758-87620777 | Msa1086930:CDS | 60.0% | |
ACTCGGCCCCTACCACCTAT+AGG | + | chr7_2:87620131-87620150 | None:intergenic | 60.0% | |
CCGCTCTTTCCCGGATACTC+GGG | + | chr7_2:87620554-87620573 | None:intergenic | 60.0% | |
CCCGAGTATCCGGGAAAGAG+CGG | - | chr7_2:87620551-87620570 | Msa1086930:CDS | 60.0% | |
AATGGAGGTTTGGGCGCTCG+AGG | - | chr7_2:87620757-87620776 | Msa1086930:CDS | 60.0% | |
ATGGAGGTTTGGGCGCTCGA+GGG | - | chr7_2:87620758-87620777 | Msa1086930:CDS | 60.0% | |
TGGAGGTTTGGGCGCTCGAG+GGG | - | chr7_2:87620759-87620778 | Msa1086930:CDS | 65.0% | |
GTTTGGGCGCTCGAGGGGTT+CGG | - | chr7_2:87620764-87620783 | Msa1086930:CDS | 65.0% | |
TGGAGGTTTGGGCGCTCGAG+GGG | - | chr7_2:87620759-87620778 | Msa1086930:CDS | 65.0% | |
GTTTGGGCGCTCGAGGGGTT+CGG | - | chr7_2:87620764-87620783 | Msa1086930:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 87620032 | 87621009 | 87620032 | ID=Msa1086930;Name=Msa1086930 |
chr7_2 | mRNA | 87620032 | 87621009 | 87620032 | ID=Msa1086930-mRNA-1;Parent=Msa1086930;Name=Msa1086930-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|325 |
chr7_2 | exon | 87620032 | 87621009 | 87620032 | ID=Msa1086930-mRNA-1:exon:23929;Parent=Msa1086930-mRNA-1 |
chr7_2 | CDS | 87620032 | 87621009 | 87620032 | ID=Msa1086930-mRNA-1:cds;Parent=Msa1086930-mRNA-1 |
Gene Sequence |
Protein sequence |