AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1086930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086930 MtrunA17_Chr4g0016641 99.692 325 1 0 1 325 751 1075 0.0 665
Msa1086930 MtrunA17_CPg0493041 99.692 325 1 0 1 325 751 1075 0.0 665
Msa1086930 MtrunA17_Chr4g0015541 87.619 210 2 1 116 325 1 186 6.58e-127 365
Msa1086930 MtrunA17_Chr1g0159041 73.333 150 4 1 1 150 209 322 1.97e-67 214
Msa1086930 MtrunA17_Chr8g0345421 31.228 285 166 5 38 306 853 1123 2.72e-32 127
Msa1086930 MtrunA17_Chr1g0155911 30.159 252 146 4 70 306 939 1175 1.72e-31 125
Msa1086930 MtrunA17_Chr4g0069391 30.472 233 155 2 60 291 916 1142 9.90e-26 108
Msa1086930 MtrunA17_Chr8g0375171 26.498 317 186 9 17 308 885 1179 5.86e-21 94.0
Msa1086930 MtrunA17_Chr3g0136911 26.498 317 186 9 17 308 887 1181 7.13e-21 93.6
Msa1086930 MtrunA17_Chr3g0142431 27.381 252 146 6 79 308 2 238 7.66e-19 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086930 ATCG00190.1 93.538 325 21 0 1 325 748 1072 0.0 635
Msa1086930 AT4G21710.1 30.952 252 144 4 70 306 936 1172 1.80e-33 131
Msa1086930 AT5G45140.2 30.916 262 156 2 58 304 899 1150 3.34e-32 127
Msa1086930 AT5G45140.1 30.916 262 156 2 58 304 899 1150 3.34e-32 127
Msa1086930 AT1G29940.1 30.172 232 148 4 43 267 867 1091 2.75e-26 110
Msa1086930 AT3G23780.1 25.460 326 191 8 17 309 860 1166 6.60e-19 88.2
Msa1086930 AT3G23780.2 25.460 326 191 8 17 309 860 1166 6.60e-19 88.2
Msa1086930 AT3G18090.1 25.705 319 200 7 17 309 742 1049 8.32e-19 87.8

Find 93 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTTTCGCCCTTCCTTTA+AGG 0.204769 7_2:+87620304 None:intergenic
GTTACACAACAACCCCTTAA+AGG 0.212213 7_2:-87620318 Msa1086930:CDS
TGGATTCGATGTTTGTTTAC+TGG 0.222331 7_2:+87620503 None:intergenic
ATATATATATGAATCGTTTC+TGG 0.228166 7_2:+87620822 None:intergenic
TTTGAACAGCCTGTTATAAT+AGG 0.245428 7_2:-87620417 Msa1086930:CDS
TGAATTAATTTCAAGATATA+AGG 0.248171 7_2:+87620390 None:intergenic
ACGAGCTATACTTGGGATTC+AGG 0.269809 7_2:-87620946 Msa1086930:CDS
GGTCTTCCATCTTGCAAATA+AGG 0.291965 7_2:+87620705 None:intergenic
TTGTTTCGCCCTTCCTTTAA+GGG 0.292882 7_2:+87620305 None:intergenic
ATTCGTGAGGGTACCCCTAA+TGG 0.306675 7_2:+87620663 None:intergenic
TCAAATATTCCGCTCTTTCC+CGG 0.314064 7_2:+87620459 None:intergenic
GGAATATTTGATGGAAGAAC+AGG 0.334674 7_2:-87620447 Msa1086930:CDS
AATGAATGTAGGACAGATAT+TGG 0.340082 7_2:-87620643 Msa1086930:CDS
AAACTTCCTTCCTTTGAATC+TGG 0.340714 7_2:+87620034 None:intergenic
TCTGGAGCATCCACAGGTTT+AGG 0.340865 7_2:+87620135 None:intergenic
ACGAGCAATCGAAAAGATTC+TGG 0.342745 7_2:+87620117 None:intergenic
ATATGGTCTTCAACCCATTA+GGG 0.343228 7_2:-87620677 Msa1086930:CDS
GTACTCGGAACTACGATTAT+TGG 0.356639 7_2:-87620168 Msa1086930:CDS
CGTTCGAGAACTACGATCTT+TGG 0.364953 7_2:-87620097 Msa1086930:CDS
TCCGCTCTTTCCCGGATACT+CGG 0.379405 7_2:+87620467 None:intergenic
GAATGTTCACTCGGATTAGC+TGG 0.386652 7_2:-87620621 Msa1086930:CDS
GATATTTGAACCCGAGTATC+CGG 0.389575 7_2:-87620478 Msa1086930:CDS
GATATGGTCTTCAACCCATT+AGG 0.395616 7_2:-87620678 Msa1086930:CDS
GTTTGGGCGCTCGAGGGGTT+CGG 0.396040 7_2:-87620255 Msa1086930:CDS
AGATGGAAGACCCGTTGATA+TGG 0.398344 7_2:-87620694 Msa1086930:CDS
AGATTATTACGAGCTATACT+TGG 0.409704 7_2:-87620954 Msa1086930:CDS
ATGGAGGTTTGGGCGCTCGA+GGG 0.426714 7_2:-87620261 Msa1086930:CDS
GCCGGGAGACATGGAAATAA+AGG 0.429982 7_2:-87620762 Msa1086930:CDS
TTCGTGAGGGTACCCCTAAT+GGG 0.434009 7_2:+87620664 None:intergenic
ATTATAACAGGCTGTTCAAA+AGG 0.436541 7_2:+87620420 None:intergenic
AGGACAACGGGTAGGCGAAA+TGG 0.436703 7_2:-87620280 Msa1086930:CDS
ACTTGTCTAAAACTACCTAT+AGG 0.437083 7_2:-87620906 Msa1086930:CDS
ACCTTTATTTCCATGTCTCC+CGG 0.449391 7_2:+87620761 None:intergenic
ACTCGGCCCCTACCACCTAT+AGG 0.455800 7_2:+87620891 None:intergenic
AATGGAGGTTTGGGCGCTCG+AGG 0.461267 7_2:-87620262 Msa1086930:CDS
GCTCGTAATAATCTATCTTC+CGG 0.462719 7_2:+87620963 None:intergenic
GGTAGGCGAAATGGAGGTTT+GGG 0.465784 7_2:-87620271 Msa1086930:CDS
GGGTAGGCGAAATGGAGGTT+TGG 0.465926 7_2:-87620272 Msa1086930:CDS
GGAAAGAGCGGAATATTTGA+TGG 0.469164 7_2:-87620456 Msa1086930:CDS
CCGCTCTTTCCCGGATACTC+GGG 0.478316 7_2:+87620468 None:intergenic
GGCGAAACAAGGAGGACAAC+GGG 0.481846 7_2:-87620292 Msa1086930:CDS
TGTTCATATCTCTCATCAAA+AGG 0.491842 7_2:+87620567 None:intergenic
CAAGTTGATGATAAAATACA+TGG 0.502523 7_2:-87620366 Msa1086930:CDS
TGGAGGTTTGGGCGCTCGAG+GGG 0.505858 7_2:-87620260 Msa1086930:CDS
AGAACTACGATCTTTGGCTC+TGG 0.513829 7_2:-87620091 Msa1086930:CDS
GATATGCCTTATTTGCAAGA+TGG 0.518600 7_2:-87620711 Msa1086930:CDS
GTAAACAAACATCGAATCCA+TGG 0.519391 7_2:-87620500 Msa1086930:CDS
CAGAAACGTGAAATTAAAGT+AGG 0.520965 7_2:-87620795 Msa1086930:CDS
AAAGTAGGTGATAAAGTGGC+CGG 0.529519 7_2:-87620780 Msa1086930:CDS
AAAACTACCTATAGGTGGTA+GGG 0.530153 7_2:-87620898 Msa1086930:CDS
AAAGATTCTGGAGCATCCAC+AGG 0.531781 7_2:+87620129 None:intergenic
GATAAAGTGGCCGGGAGACA+TGG 0.532845 7_2:-87620771 Msa1086930:CDS
AGAAAGACTTCCAGATTCAA+AGG 0.533242 7_2:-87620044 Msa1086930:CDS
GGGTTGAAGACCATATCAAC+GGG 0.535156 7_2:+87620684 None:intergenic
CACAACAACCCCTTAAAGGA+AGG 0.535519 7_2:-87620314 Msa1086930:CDS
TAAAACTACCTATAGGTGGT+AGG 0.538804 7_2:-87620899 Msa1086930:CDS
TAATCTATCTTCCGGAGCAT+AGG 0.540322 7_2:+87620971 None:intergenic
TCTATCTTCCGGAGCATAGG+AGG 0.540370 7_2:+87620974 None:intergenic
TACTCGGGTTCAAATATCCA+TGG 0.546454 7_2:+87620483 None:intergenic
CAGATATTGGAATGTTCACT+CGG 0.551609 7_2:-87620630 Msa1086930:CDS
GATTATTACGAGCTATACTT+GGG 0.558504 7_2:-87620953 Msa1086930:CDS
GCCGAGTTATTGATGTGAGA+TGG 0.559021 7_2:-87620875 Msa1086930:CDS
CTCGGAACTACGATTATTGG+AGG 0.559077 7_2:-87620165 Msa1086930:CDS
AGACTTCCAGATTCAAAGGA+AGG 0.563377 7_2:-87620040 Msa1086930:CDS
GGAAGTCTTTCTCAGATACA+AGG 0.565963 7_2:+87620055 None:intergenic
AACAAGTGCATAATGTCCAC+TGG 0.566338 7_2:+87620338 None:intergenic
TGTTTCGCCCTTCCTTTAAG+GGG 0.567625 7_2:+87620306 None:intergenic
AATGTTCACTCGGATTAGCT+GGG 0.569063 7_2:-87620620 Msa1086930:CDS
GAAAGAATCCTCCTATGCTC+CGG 0.570879 7_2:-87620982 Msa1086930:CDS
CTTAAAGGAAGGGCGAAACA+AGG 0.579473 7_2:-87620303 Msa1086930:CDS
AATTAAAGTAGGTGATAAAG+TGG 0.581077 7_2:-87620784 Msa1086930:CDS
ATATTTGAACCCGAGTATCC+GGG 0.581389 7_2:-87620477 Msa1086930:CDS
CTGTCCTACATTCATTCGTG+AGG 0.583153 7_2:+87620650 None:intergenic
CCCGAGTATCCGGGAAAGAG+CGG 0.584519 7_2:-87620468 Msa1086930:CDS
AAGTAGGTGATAAAGTGGCC+GGG 0.597954 7_2:-87620779 Msa1086930:CDS
GGGCGAAACAAGGAGGACAA+CGG 0.598993 7_2:-87620293 Msa1086930:CDS
TCCATCTCACATCAATAACT+CGG 0.602104 7_2:+87620874 None:intergenic
TGTCCTACATTCATTCGTGA+GGG 0.611498 7_2:+87620651 None:intergenic
AAAATACATGGACGTTCCAG+TGG 0.614997 7_2:-87620354 Msa1086930:CDS
AAACTACCTATAGGTGGTAG+GGG 0.618823 7_2:-87620897 Msa1086930:CDS
TGATGAGAGATATGAACAGG+AGG 0.620223 7_2:-87620562 Msa1086930:CDS
GTACCCTCACGAATGAATGT+AGG 0.622385 7_2:-87620654 Msa1086930:CDS
TGGGTTGAAGACCATATCAA+CGG 0.622611 7_2:+87620683 None:intergenic
AAACAAGGAGGACAACGGGT+AGG 0.626804 7_2:-87620288 Msa1086930:CDS
ACAACAACCCCTTAAAGGAA+GGG 0.636584 7_2:-87620313 Msa1086930:CDS
AGGAACAATACCTAAACCTG+TGG 0.656849 7_2:-87620145 Msa1086930:CDS
AAAGCTCGTCAAGAAGTACT+CGG 0.659322 7_2:-87620183 Msa1086930:CDS
ACAACGGGTAGGCGAAATGG+AGG 0.659407 7_2:-87620277 Msa1086930:CDS
TATGGTCTTCAACCCATTAG+GGG 0.670295 7_2:-87620676 Msa1086930:CDS
GATTCAGGTATCGACCTCAA+AGG 0.672007 7_2:-87620931 Msa1086930:CDS
TGTCTAAAACTACCTATAGG+TGG 0.673297 7_2:-87620903 Msa1086930:CDS
GAATATTTGATGGAAGAACA+GGG 0.689025 7_2:-87620446 Msa1086930:CDS
AAAGGAAGGGCGAAACAAGG+AGG 0.708508 7_2:-87620300 Msa1086930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATTAATTTCAAGATATA+AGG + chr7_2:87620632-87620651 None:intergenic 15.0%
!! TGAATTAATTTCAAGATATA+AGG + chr7_2:87620632-87620651 None:intergenic 15.0%
!! ATATATATATGAATCGTTTC+TGG + chr7_2:87620200-87620219 None:intergenic 20.0%
!! ATATATATATGAATCGTTTC+TGG + chr7_2:87620200-87620219 None:intergenic 20.0%
! AATTAAAGTAGGTGATAAAG+TGG - chr7_2:87620235-87620254 Msa1086930:CDS 25.0%
!! TAAGGTTTTCCTATTATAAC+AGG + chr7_2:87620614-87620633 None:intergenic 25.0%
!!! CAAGTTGATGATAAAATACA+TGG - chr7_2:87620653-87620672 Msa1086930:CDS 25.0%
! AATTAAAGTAGGTGATAAAG+TGG - chr7_2:87620235-87620254 Msa1086930:CDS 25.0%
!! TAAGGTTTTCCTATTATAAC+AGG + chr7_2:87620614-87620633 None:intergenic 25.0%
!!! CAAGTTGATGATAAAATACA+TGG - chr7_2:87620653-87620672 Msa1086930:CDS 25.0%
AGATTATTACGAGCTATACT+TGG - chr7_2:87620065-87620084 Msa1086930:CDS 30.0%
GATTATTACGAGCTATACTT+GGG - chr7_2:87620066-87620085 Msa1086930:CDS 30.0%
! TTTTAGACAAGTTTCCTTTG+AGG + chr7_2:87620105-87620124 None:intergenic 30.0%
! ACTTGTCTAAAACTACCTAT+AGG - chr7_2:87620113-87620132 Msa1086930:CDS 30.0%
CAGAAACGTGAAATTAAAGT+AGG - chr7_2:87620224-87620243 Msa1086930:CDS 30.0%
! TTCAAAGATTTTGTCTAGAC+AGG - chr7_2:87620286-87620305 Msa1086930:CDS 30.0%
AATGAATGTAGGACAGATAT+TGG - chr7_2:87620376-87620395 Msa1086930:CDS 30.0%
TGTTCATATCTCTCATCAAA+AGG + chr7_2:87620455-87620474 None:intergenic 30.0%
! TTTTGATGAGAGATATGAAC+AGG - chr7_2:87620454-87620473 Msa1086930:CDS 30.0%
! TTCAGAAAACACAAGTTTTC+TGG + chr7_2:87620486-87620505 None:intergenic 30.0%
GAATATTTGATGGAAGAACA+GGG - chr7_2:87620573-87620592 Msa1086930:CDS 30.0%
ATTATAACAGGCTGTTCAAA+AGG + chr7_2:87620602-87620621 None:intergenic 30.0%
TTTGAACAGCCTGTTATAAT+AGG - chr7_2:87620602-87620621 Msa1086930:CDS 30.0%
AGATTATTACGAGCTATACT+TGG - chr7_2:87620065-87620084 Msa1086930:CDS 30.0%
GATTATTACGAGCTATACTT+GGG - chr7_2:87620066-87620085 Msa1086930:CDS 30.0%
! TTTTAGACAAGTTTCCTTTG+AGG + chr7_2:87620105-87620124 None:intergenic 30.0%
! ACTTGTCTAAAACTACCTAT+AGG - chr7_2:87620113-87620132 Msa1086930:CDS 30.0%
CAGAAACGTGAAATTAAAGT+AGG - chr7_2:87620224-87620243 Msa1086930:CDS 30.0%
! TTCAAAGATTTTGTCTAGAC+AGG - chr7_2:87620286-87620305 Msa1086930:CDS 30.0%
AATGAATGTAGGACAGATAT+TGG - chr7_2:87620376-87620395 Msa1086930:CDS 30.0%
TGTTCATATCTCTCATCAAA+AGG + chr7_2:87620455-87620474 None:intergenic 30.0%
! TTTTGATGAGAGATATGAAC+AGG - chr7_2:87620454-87620473 Msa1086930:CDS 30.0%
! TTCAGAAAACACAAGTTTTC+TGG + chr7_2:87620486-87620505 None:intergenic 30.0%
GAATATTTGATGGAAGAACA+GGG - chr7_2:87620573-87620592 Msa1086930:CDS 30.0%
ATTATAACAGGCTGTTCAAA+AGG + chr7_2:87620602-87620621 None:intergenic 30.0%
TTTGAACAGCCTGTTATAAT+AGG - chr7_2:87620602-87620621 Msa1086930:CDS 30.0%
GCTCGTAATAATCTATCTTC+CGG + chr7_2:87620059-87620078 None:intergenic 35.0%
! TGTCTAAAACTACCTATAGG+TGG - chr7_2:87620116-87620135 Msa1086930:CDS 35.0%
TAAAACTACCTATAGGTGGT+AGG - chr7_2:87620120-87620139 Msa1086930:CDS 35.0%
AAAACTACCTATAGGTGGTA+GGG - chr7_2:87620121-87620140 Msa1086930:CDS 35.0%
TCCATCTCACATCAATAACT+CGG + chr7_2:87620148-87620167 None:intergenic 35.0%
AGATGGATCCAAAAAAAAGC+AGG - chr7_2:87620161-87620180 Msa1086930:CDS 35.0%
!!! AGCTAGAACCTGCTTTTTTT+TGG + chr7_2:87620172-87620191 None:intergenic 35.0%
!! GATATGCCTTATTTGCAAGA+TGG - chr7_2:87620308-87620327 Msa1086930:CDS 35.0%
ATATGGTCTTCAACCCATTA+GGG - chr7_2:87620342-87620361 Msa1086930:CDS 35.0%
CAGATATTGGAATGTTCACT+CGG - chr7_2:87620389-87620408 Msa1086930:CDS 35.0%
TGGATTCGATGTTTGTTTAC+TGG + chr7_2:87620519-87620538 None:intergenic 35.0%
GTAAACAAACATCGAATCCA+TGG - chr7_2:87620519-87620538 Msa1086930:CDS 35.0%
GGAATATTTGATGGAAGAAC+AGG - chr7_2:87620572-87620591 Msa1086930:CDS 35.0%
AGAAAGACTTCCAGATTCAA+AGG - chr7_2:87620975-87620994 Msa1086930:CDS 35.0%
AAACTTCCTTCCTTTGAATC+TGG + chr7_2:87620988-87621007 None:intergenic 35.0%
GCTCGTAATAATCTATCTTC+CGG + chr7_2:87620059-87620078 None:intergenic 35.0%
! TGTCTAAAACTACCTATAGG+TGG - chr7_2:87620116-87620135 Msa1086930:CDS 35.0%
TAAAACTACCTATAGGTGGT+AGG - chr7_2:87620120-87620139 Msa1086930:CDS 35.0%
AAAACTACCTATAGGTGGTA+GGG - chr7_2:87620121-87620140 Msa1086930:CDS 35.0%
TCCATCTCACATCAATAACT+CGG + chr7_2:87620148-87620167 None:intergenic 35.0%
AGATGGATCCAAAAAAAAGC+AGG - chr7_2:87620161-87620180 Msa1086930:CDS 35.0%
!!! AGCTAGAACCTGCTTTTTTT+TGG + chr7_2:87620172-87620191 None:intergenic 35.0%
!! GATATGCCTTATTTGCAAGA+TGG - chr7_2:87620308-87620327 Msa1086930:CDS 35.0%
ATATGGTCTTCAACCCATTA+GGG - chr7_2:87620342-87620361 Msa1086930:CDS 35.0%
CAGATATTGGAATGTTCACT+CGG - chr7_2:87620389-87620408 Msa1086930:CDS 35.0%
TGGATTCGATGTTTGTTTAC+TGG + chr7_2:87620519-87620538 None:intergenic 35.0%
GTAAACAAACATCGAATCCA+TGG - chr7_2:87620519-87620538 Msa1086930:CDS 35.0%
GGAATATTTGATGGAAGAAC+AGG - chr7_2:87620572-87620591 Msa1086930:CDS 35.0%
AGAAAGACTTCCAGATTCAA+AGG - chr7_2:87620975-87620994 Msa1086930:CDS 35.0%
AAACTTCCTTCCTTTGAATC+TGG + chr7_2:87620988-87621007 None:intergenic 35.0%
TAATCTATCTTCCGGAGCAT+AGG + chr7_2:87620051-87620070 None:intergenic 40.0%
AAACTACCTATAGGTGGTAG+GGG - chr7_2:87620122-87620141 Msa1086930:CDS 40.0%
AAAGTAGGTGATAAAGTGGC+CGG - chr7_2:87620239-87620258 Msa1086930:CDS 40.0%
! ACCTTTATTTCCATGTCTCC+CGG + chr7_2:87620261-87620280 None:intergenic 40.0%
GGTCTTCCATCTTGCAAATA+AGG + chr7_2:87620317-87620336 None:intergenic 40.0%
! TGGGTTGAAGACCATATCAA+CGG + chr7_2:87620339-87620358 None:intergenic 40.0%
GATATGGTCTTCAACCCATT+AGG - chr7_2:87620341-87620360 Msa1086930:CDS 40.0%
TATGGTCTTCAACCCATTAG+GGG - chr7_2:87620343-87620362 Msa1086930:CDS 40.0%
TGTCCTACATTCATTCGTGA+GGG + chr7_2:87620371-87620390 None:intergenic 40.0%
!! AATGTTCACTCGGATTAGCT+GGG - chr7_2:87620399-87620418 Msa1086930:CDS 40.0%
TGATGAGAGATATGAACAGG+AGG - chr7_2:87620457-87620476 Msa1086930:CDS 40.0%
TACTCGGGTTCAAATATCCA+TGG + chr7_2:87620539-87620558 None:intergenic 40.0%
GATATTTGAACCCGAGTATC+CGG - chr7_2:87620541-87620560 Msa1086930:CDS 40.0%
ATATTTGAACCCGAGTATCC+GGG - chr7_2:87620542-87620561 Msa1086930:CDS 40.0%
TCAAATATTCCGCTCTTTCC+CGG + chr7_2:87620563-87620582 None:intergenic 40.0%
GGAAAGAGCGGAATATTTGA+TGG - chr7_2:87620563-87620582 Msa1086930:CDS 40.0%
AAAATACATGGACGTTCCAG+TGG - chr7_2:87620665-87620684 Msa1086930:CDS 40.0%
AACAAGTGCATAATGTCCAC+TGG + chr7_2:87620684-87620703 None:intergenic 40.0%
GTTACACAACAACCCCTTAA+AGG - chr7_2:87620701-87620720 Msa1086930:CDS 40.0%
ACAACAACCCCTTAAAGGAA+GGG - chr7_2:87620706-87620725 Msa1086930:CDS 40.0%
TTGTTTCGCCCTTCCTTTAA+GGG + chr7_2:87620717-87620736 None:intergenic 40.0%
!! AAAGCTCGTCAAGAAGTACT+CGG - chr7_2:87620836-87620855 Msa1086930:CDS 40.0%
GTACTCGGAACTACGATTAT+TGG - chr7_2:87620851-87620870 Msa1086930:CDS 40.0%
AGGAACAATACCTAAACCTG+TGG - chr7_2:87620874-87620893 Msa1086930:CDS 40.0%
ACGAGCAATCGAAAAGATTC+TGG + chr7_2:87620905-87620924 None:intergenic 40.0%
GGAAGTCTTTCTCAGATACA+AGG + chr7_2:87620967-87620986 None:intergenic 40.0%
AGACTTCCAGATTCAAAGGA+AGG - chr7_2:87620979-87620998 Msa1086930:CDS 40.0%
TAATCTATCTTCCGGAGCAT+AGG + chr7_2:87620051-87620070 None:intergenic 40.0%
AAACTACCTATAGGTGGTAG+GGG - chr7_2:87620122-87620141 Msa1086930:CDS 40.0%
AAAGTAGGTGATAAAGTGGC+CGG - chr7_2:87620239-87620258 Msa1086930:CDS 40.0%
! ACCTTTATTTCCATGTCTCC+CGG + chr7_2:87620261-87620280 None:intergenic 40.0%
GGTCTTCCATCTTGCAAATA+AGG + chr7_2:87620317-87620336 None:intergenic 40.0%
! TGGGTTGAAGACCATATCAA+CGG + chr7_2:87620339-87620358 None:intergenic 40.0%
GATATGGTCTTCAACCCATT+AGG - chr7_2:87620341-87620360 Msa1086930:CDS 40.0%
TATGGTCTTCAACCCATTAG+GGG - chr7_2:87620343-87620362 Msa1086930:CDS 40.0%
TGTCCTACATTCATTCGTGA+GGG + chr7_2:87620371-87620390 None:intergenic 40.0%
!! AATGTTCACTCGGATTAGCT+GGG - chr7_2:87620399-87620418 Msa1086930:CDS 40.0%
TGATGAGAGATATGAACAGG+AGG - chr7_2:87620457-87620476 Msa1086930:CDS 40.0%
TACTCGGGTTCAAATATCCA+TGG + chr7_2:87620539-87620558 None:intergenic 40.0%
GATATTTGAACCCGAGTATC+CGG - chr7_2:87620541-87620560 Msa1086930:CDS 40.0%
ATATTTGAACCCGAGTATCC+GGG - chr7_2:87620542-87620561 Msa1086930:CDS 40.0%
TCAAATATTCCGCTCTTTCC+CGG + chr7_2:87620563-87620582 None:intergenic 40.0%
GGAAAGAGCGGAATATTTGA+TGG - chr7_2:87620563-87620582 Msa1086930:CDS 40.0%
AAAATACATGGACGTTCCAG+TGG - chr7_2:87620665-87620684 Msa1086930:CDS 40.0%
AACAAGTGCATAATGTCCAC+TGG + chr7_2:87620684-87620703 None:intergenic 40.0%
GTTACACAACAACCCCTTAA+AGG - chr7_2:87620701-87620720 Msa1086930:CDS 40.0%
ACAACAACCCCTTAAAGGAA+GGG - chr7_2:87620706-87620725 Msa1086930:CDS 40.0%
TTGTTTCGCCCTTCCTTTAA+GGG + chr7_2:87620717-87620736 None:intergenic 40.0%
!! AAAGCTCGTCAAGAAGTACT+CGG - chr7_2:87620836-87620855 Msa1086930:CDS 40.0%
GTACTCGGAACTACGATTAT+TGG - chr7_2:87620851-87620870 Msa1086930:CDS 40.0%
AGGAACAATACCTAAACCTG+TGG - chr7_2:87620874-87620893 Msa1086930:CDS 40.0%
ACGAGCAATCGAAAAGATTC+TGG + chr7_2:87620905-87620924 None:intergenic 40.0%
GGAAGTCTTTCTCAGATACA+AGG + chr7_2:87620967-87620986 None:intergenic 40.0%
AGACTTCCAGATTCAAAGGA+AGG - chr7_2:87620979-87620998 Msa1086930:CDS 40.0%
GAAAGAATCCTCCTATGCTC+CGG - chr7_2:87620037-87620056 Msa1086930:CDS 45.0%
ACGAGCTATACTTGGGATTC+AGG - chr7_2:87620073-87620092 Msa1086930:CDS 45.0%
!! GATTCAGGTATCGACCTCAA+AGG - chr7_2:87620088-87620107 Msa1086930:CDS 45.0%
GCCGAGTTATTGATGTGAGA+TGG - chr7_2:87620144-87620163 Msa1086930:CDS 45.0%
AAGTAGGTGATAAAGTGGCC+GGG - chr7_2:87620240-87620259 Msa1086930:CDS 45.0%
AGATGGAAGACCCGTTGATA+TGG - chr7_2:87620325-87620344 Msa1086930:CDS 45.0%
GGGTTGAAGACCATATCAAC+GGG + chr7_2:87620338-87620357 None:intergenic 45.0%
GTACCCTCACGAATGAATGT+AGG - chr7_2:87620365-87620384 Msa1086930:CDS 45.0%
CTGTCCTACATTCATTCGTG+AGG + chr7_2:87620372-87620391 None:intergenic 45.0%
!! GAATGTTCACTCGGATTAGC+TGG - chr7_2:87620398-87620417 Msa1086930:CDS 45.0%
CACAACAACCCCTTAAAGGA+AGG - chr7_2:87620705-87620724 Msa1086930:CDS 45.0%
TGTTTCGCCCTTCCTTTAAG+GGG + chr7_2:87620716-87620735 None:intergenic 45.0%
CTTGTTTCGCCCTTCCTTTA+AGG + chr7_2:87620718-87620737 None:intergenic 45.0%
CTTAAAGGAAGGGCGAAACA+AGG - chr7_2:87620716-87620735 Msa1086930:CDS 45.0%
CTCGGAACTACGATTATTGG+AGG - chr7_2:87620854-87620873 Msa1086930:CDS 45.0%
!! AAAGATTCTGGAGCATCCAC+AGG + chr7_2:87620893-87620912 None:intergenic 45.0%
CGTTCGAGAACTACGATCTT+TGG - chr7_2:87620922-87620941 Msa1086930:CDS 45.0%
! AGAACTACGATCTTTGGCTC+TGG - chr7_2:87620928-87620947 Msa1086930:CDS 45.0%
GAAAGAATCCTCCTATGCTC+CGG - chr7_2:87620037-87620056 Msa1086930:CDS 45.0%
ACGAGCTATACTTGGGATTC+AGG - chr7_2:87620073-87620092 Msa1086930:CDS 45.0%
!! GATTCAGGTATCGACCTCAA+AGG - chr7_2:87620088-87620107 Msa1086930:CDS 45.0%
GCCGAGTTATTGATGTGAGA+TGG - chr7_2:87620144-87620163 Msa1086930:CDS 45.0%
AAGTAGGTGATAAAGTGGCC+GGG - chr7_2:87620240-87620259 Msa1086930:CDS 45.0%
AGATGGAAGACCCGTTGATA+TGG - chr7_2:87620325-87620344 Msa1086930:CDS 45.0%
GGGTTGAAGACCATATCAAC+GGG + chr7_2:87620338-87620357 None:intergenic 45.0%
GTACCCTCACGAATGAATGT+AGG - chr7_2:87620365-87620384 Msa1086930:CDS 45.0%
CTGTCCTACATTCATTCGTG+AGG + chr7_2:87620372-87620391 None:intergenic 45.0%
!! GAATGTTCACTCGGATTAGC+TGG - chr7_2:87620398-87620417 Msa1086930:CDS 45.0%
CACAACAACCCCTTAAAGGA+AGG - chr7_2:87620705-87620724 Msa1086930:CDS 45.0%
TGTTTCGCCCTTCCTTTAAG+GGG + chr7_2:87620716-87620735 None:intergenic 45.0%
CTTGTTTCGCCCTTCCTTTA+AGG + chr7_2:87620718-87620737 None:intergenic 45.0%
CTTAAAGGAAGGGCGAAACA+AGG - chr7_2:87620716-87620735 Msa1086930:CDS 45.0%
CTCGGAACTACGATTATTGG+AGG - chr7_2:87620854-87620873 Msa1086930:CDS 45.0%
!! AAAGATTCTGGAGCATCCAC+AGG + chr7_2:87620893-87620912 None:intergenic 45.0%
CGTTCGAGAACTACGATCTT+TGG - chr7_2:87620922-87620941 Msa1086930:CDS 45.0%
! AGAACTACGATCTTTGGCTC+TGG - chr7_2:87620928-87620947 Msa1086930:CDS 45.0%
TCTATCTTCCGGAGCATAGG+AGG + chr7_2:87620048-87620067 None:intergenic 50.0%
GCCGGGAGACATGGAAATAA+AGG - chr7_2:87620257-87620276 Msa1086930:CDS 50.0%
!! TTCGTGAGGGTACCCCTAAT+GGG + chr7_2:87620358-87620377 None:intergenic 50.0%
!! ATTCGTGAGGGTACCCCTAA+TGG + chr7_2:87620359-87620378 None:intergenic 50.0%
AAAGGAAGGGCGAAACAAGG+AGG - chr7_2:87620719-87620738 Msa1086930:CDS 50.0%
AAACAAGGAGGACAACGGGT+AGG - chr7_2:87620731-87620750 Msa1086930:CDS 50.0%
GGTAGGCGAAATGGAGGTTT+GGG - chr7_2:87620748-87620767 Msa1086930:CDS 50.0%
! TCTGGAGCATCCACAGGTTT+AGG + chr7_2:87620887-87620906 None:intergenic 50.0%
TCTATCTTCCGGAGCATAGG+AGG + chr7_2:87620048-87620067 None:intergenic 50.0%
GCCGGGAGACATGGAAATAA+AGG - chr7_2:87620257-87620276 Msa1086930:CDS 50.0%
!! TTCGTGAGGGTACCCCTAAT+GGG + chr7_2:87620358-87620377 None:intergenic 50.0%
!! ATTCGTGAGGGTACCCCTAA+TGG + chr7_2:87620359-87620378 None:intergenic 50.0%
AAAGGAAGGGCGAAACAAGG+AGG - chr7_2:87620719-87620738 Msa1086930:CDS 50.0%
AAACAAGGAGGACAACGGGT+AGG - chr7_2:87620731-87620750 Msa1086930:CDS 50.0%
GGTAGGCGAAATGGAGGTTT+GGG - chr7_2:87620748-87620767 Msa1086930:CDS 50.0%
! TCTGGAGCATCCACAGGTTT+AGG + chr7_2:87620887-87620906 None:intergenic 50.0%
GATAAAGTGGCCGGGAGACA+TGG - chr7_2:87620248-87620267 Msa1086930:CDS 55.0%
TCCGCTCTTTCCCGGATACT+CGG + chr7_2:87620555-87620574 None:intergenic 55.0%
GGGCGAAACAAGGAGGACAA+CGG - chr7_2:87620726-87620745 Msa1086930:CDS 55.0%
GGCGAAACAAGGAGGACAAC+GGG - chr7_2:87620727-87620746 Msa1086930:CDS 55.0%
AGGACAACGGGTAGGCGAAA+TGG - chr7_2:87620739-87620758 Msa1086930:CDS 55.0%
ACAACGGGTAGGCGAAATGG+AGG - chr7_2:87620742-87620761 Msa1086930:CDS 55.0%
GGGTAGGCGAAATGGAGGTT+TGG - chr7_2:87620747-87620766 Msa1086930:CDS 55.0%
GATAAAGTGGCCGGGAGACA+TGG - chr7_2:87620248-87620267 Msa1086930:CDS 55.0%
TCCGCTCTTTCCCGGATACT+CGG + chr7_2:87620555-87620574 None:intergenic 55.0%
GGGCGAAACAAGGAGGACAA+CGG - chr7_2:87620726-87620745 Msa1086930:CDS 55.0%
GGCGAAACAAGGAGGACAAC+GGG - chr7_2:87620727-87620746 Msa1086930:CDS 55.0%
AGGACAACGGGTAGGCGAAA+TGG - chr7_2:87620739-87620758 Msa1086930:CDS 55.0%
ACAACGGGTAGGCGAAATGG+AGG - chr7_2:87620742-87620761 Msa1086930:CDS 55.0%
GGGTAGGCGAAATGGAGGTT+TGG - chr7_2:87620747-87620766 Msa1086930:CDS 55.0%
ACTCGGCCCCTACCACCTAT+AGG + chr7_2:87620131-87620150 None:intergenic 60.0%
CCGCTCTTTCCCGGATACTC+GGG + chr7_2:87620554-87620573 None:intergenic 60.0%
CCCGAGTATCCGGGAAAGAG+CGG - chr7_2:87620551-87620570 Msa1086930:CDS 60.0%
AATGGAGGTTTGGGCGCTCG+AGG - chr7_2:87620757-87620776 Msa1086930:CDS 60.0%
ATGGAGGTTTGGGCGCTCGA+GGG - chr7_2:87620758-87620777 Msa1086930:CDS 60.0%
ACTCGGCCCCTACCACCTAT+AGG + chr7_2:87620131-87620150 None:intergenic 60.0%
CCGCTCTTTCCCGGATACTC+GGG + chr7_2:87620554-87620573 None:intergenic 60.0%
CCCGAGTATCCGGGAAAGAG+CGG - chr7_2:87620551-87620570 Msa1086930:CDS 60.0%
AATGGAGGTTTGGGCGCTCG+AGG - chr7_2:87620757-87620776 Msa1086930:CDS 60.0%
ATGGAGGTTTGGGCGCTCGA+GGG - chr7_2:87620758-87620777 Msa1086930:CDS 60.0%
TGGAGGTTTGGGCGCTCGAG+GGG - chr7_2:87620759-87620778 Msa1086930:CDS 65.0%
GTTTGGGCGCTCGAGGGGTT+CGG - chr7_2:87620764-87620783 Msa1086930:CDS 65.0%
TGGAGGTTTGGGCGCTCGAG+GGG - chr7_2:87620759-87620778 Msa1086930:CDS 65.0%
GTTTGGGCGCTCGAGGGGTT+CGG - chr7_2:87620764-87620783 Msa1086930:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87620032 87621009 87620032 ID=Msa1086930;Name=Msa1086930
chr7_2 mRNA 87620032 87621009 87620032 ID=Msa1086930-mRNA-1;Parent=Msa1086930;Name=Msa1086930-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|325
chr7_2 exon 87620032 87621009 87620032 ID=Msa1086930-mRNA-1:exon:23929;Parent=Msa1086930-mRNA-1
chr7_2 CDS 87620032 87621009 87620032 ID=Msa1086930-mRNA-1:cds;Parent=Msa1086930-mRNA-1
Gene Sequence

>Msa1086930

ATGGCGAAAGAATCCTCCTATGCTCCGGAAGATAGATTATTACGAGCTATACTTGGGATTCAGGTATCGACCTCAAAGGAAACTTGTCTAAAACTACCTATAGGTGGTAGGGGCCGAGTTATTGATGTGAGATGGATCCAAAAAAAAGCAGGTTCTAGCTATAATCCAGAAACGATTCATATATATATTTCACAGAAACGTGAAATTAAAGTAGGTGATAAAGTGGCCGGGAGACATGGAAATAAAGGTATCGTTTCAAAGATTTTGTCTAGACAGGATATGCCTTATTTGCAAGATGGAAGACCCGTTGATATGGTCTTCAACCCATTAGGGGTACCCTCACGAATGAATGTAGGACAGATATTGGAATGTTCACTCGGATTAGCTGGGAGTATGCTAAATAGACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAGGAGGCTTCCAGAAAACTTGTGTTTTCTGAATTATATGAAGCCAGTAAACAAACATCGAATCCATGGATATTTGAACCCGAGTATCCGGGAAAGAGCGGAATATTTGATGGAAGAACAGGGAATCCTTTTGAACAGCCTGTTATAATAGGAAAACCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACATGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAACCCCTTAAAGGAAGGGCGAAACAAGGAGGACAACGGGTAGGCGAAATGGAGGTTTGGGCGCTCGAGGGGTTCGGTGTTGCTCATATTTTACAAGAGATGCTGACTTATAAATCTGATCATATTAAAGCTCGTCAAGAAGTACTCGGAACTACGATTATTGGAGGAACAATACCTAAACCTGTGGATGCTCCAGAATCTTTTCGATTGCTCGTTCGAGAACTACGATCTTTGGCTCTGGAACTGAATCATTTCCTTGTATCTGAGAAAGACTTCCAGATTCAAAGGAAGGAAGTTTAA

Protein sequence

>Msa1086930

MAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIGGRGRVIDVRWIQKKAGSSYNPETIHIYISQKREIKVGDKVAGRHGNKGIVSKILSRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQILECSLGLAGSMLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTSNPWIFEPEYPGKSGIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPKPVDAPESFRLLVRELRSLALELNHFLVSEKDFQIQRKEV*