AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0356880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0356880 MtrunA17_Chr3g0093721 96.129 310 12 0 1 310 1 310 0.0 589
Msa0356880 MtrunA17_Chr5g0441301 78.846 312 55 3 1 301 1 312 3.14e-169 472
Msa0356880 MtrunA17_Chr8g0348171 31.757 148 95 2 25 172 4 145 2.67e-21 88.6
Msa0356880 MtrunA17_Chr7g0248741 27.703 148 101 1 25 172 3 144 1.85e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0356880 AT2G44060.2 71.698 318 69 3 1 299 1 316 4.74e-159 447
Msa0356880 AT2G44060.1 71.698 318 69 3 1 299 1 316 4.74e-159 447
Msa0356880 AT2G46140.1 29.878 164 105 2 13 172 3 160 2.75e-17 78.2
Msa0356880 AT1G01470.1 28.667 150 101 1 23 172 2 145 4.16e-17 77.4

Find 91 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAATTGATATCAACTATT+TGG 0.160309 3_1:+37129556 Msa0356880:CDS
ACCTTCAGGCCGAAGGATTT+TGG 0.160524 3_1:+37130049 Msa0356880:CDS
CCAAATAGTTGATATCAATT+AGG 0.211621 3_1:-37129556 None:intergenic
CAAATAGTTGATATCAATTA+GGG 0.261436 3_1:-37129555 None:intergenic
GTACCGCCTTCTTTGCTAAT+AGG 0.281765 3_1:-37130166 None:intergenic
AGATCAACCTTCACCTTATA+AGG 0.293664 3_1:-37129731 None:intergenic
GGGAAGTATCATTCCTTATA+AGG 0.326085 3_1:+37129718 Msa0356880:CDS
AGGGGAATCGGTACCGGATT+CGG 0.326651 3_1:-37129536 None:intergenic
TTGAGGAAACAGTTGGGTTT+GGG 0.329702 3_1:+37129426 Msa0356880:CDS
TCGGGTTTGATACCGGATTC+TGG 0.343130 3_1:+37129605 Msa0356880:CDS
CAATGGGAGGAAGCTAGTTT+CGG 0.352375 3_1:+37129586 Msa0356880:CDS
ATTGAGGAAACAGTTGGGTT+TGG 0.356214 3_1:+37129425 Msa0356880:CDS
AGGGTTTCATTCAAGACATT+GGG 0.374827 3_1:+37129396 Msa0356880:CDS
TACATATGCTGATATTCAAC+CGG 0.384028 3_1:+37129697 Msa0356880:CDS
GAAACCAACTGCAGATGTTT+CGG 0.390895 3_1:+37129448 Msa0356880:CDS
ATAGTTGATGTTCCTGTGAT+TGG 0.392201 3_1:+37129755 Msa0356880:CDS
ATTGATGTTGACACACCCTT+TGG 0.403399 3_1:+37130130 Msa0356880:CDS
TTGATCTTCCAATCACCTTC+AGG 0.405514 3_1:+37130035 Msa0356880:CDS
ATATCAGGCTTGTATGGAAT+CGG 0.407998 3_1:-37129815 None:intergenic
TAAACCAGAAATAGTGAAAA+GGG 0.409076 3_1:+37129322 Msa0356880:CDS
TTATAAGGAATGATACTTCC+CGG 0.412721 3_1:-37129716 None:intergenic
ACAAAAGGAAGGTGAGGAAA+AGG 0.421788 3_1:+37129352 Msa0356880:CDS
AGATCAATATCAGGCTTGTA+TGG 0.422032 3_1:-37129821 None:intergenic
TGCTATTCTTCATTTGAAGT+TGG 0.426339 3_1:+37129886 Msa0356880:CDS
ACTCAATGCCCTTGATTATG+AGG 0.431327 3_1:+37129934 Msa0356880:CDS
TCCTTCGGCCTGAAGGTGAT+TGG 0.431595 3_1:-37130043 None:intergenic
AATGGGAGGAAGCTAGTTTC+GGG 0.434332 3_1:+37129587 Msa0356880:CDS
TCATCATAAATCAATGTAAC+GGG 0.441391 3_1:-37129665 None:intergenic
CCCAAAATCCTTCGGCCTGA+AGG 0.452825 3_1:-37130050 None:intergenic
AACTATTTGGTTGAGAGCAA+TGG 0.459231 3_1:+37129569 Msa0356880:CDS
ACTATTTGGTTGAGAGCAAT+GGG 0.460565 3_1:+37129570 Msa0356880:CDS
ATAAACCAGAAATAGTGAAA+AGG 0.464547 3_1:+37129321 Msa0356880:CDS
GAAAAGGGGTGAAGAACAAA+AGG 0.467028 3_1:+37129337 Msa0356880:CDS
TTGATATCAATTAGGGGAAT+CGG 0.467335 3_1:-37129548 None:intergenic
CCGTTTCCTCTCCATGTGCA+TGG 0.475213 3_1:-37129634 None:intergenic
GCTAGTTTCGGGTTTGATAC+CGG 0.478481 3_1:+37129598 Msa0356880:CDS
CAAAAGGAAGGTGAGGAAAA+GGG 0.483494 3_1:+37129353 Msa0356880:CDS
AAGGGTTTCATTCAAGACAT+TGG 0.489962 3_1:+37129395 Msa0356880:CDS
AGACATTGGGGAGAAGATTG+AGG 0.492962 3_1:+37129409 Msa0356880:CDS
GAGAAGATTGAGGAAACAGT+TGG 0.495120 3_1:+37129419 Msa0356880:CDS
CTCCTTACTCTTCTTGAGAC+GGG 0.498996 3_1:-37130191 None:intergenic
TATCAGGCTTGTATGGAATC+GGG 0.508761 3_1:-37129814 None:intergenic
TGGCTTGGTGATGATAGGAT+TGG 0.510174 3_1:+37129959 Msa0356880:CDS
TCTCATAAAGAATCCGAATC+CGG 0.510443 3_1:+37129523 Msa0356880:CDS
TGGGACATGATGAGAGGAAA+AGG 0.514116 3_1:+37130082 Msa0356880:CDS
TCCAATCACCTTCAGGCCGA+AGG 0.514304 3_1:+37130042 Msa0356880:CDS
GGCAATTTCATCGCTCCAAA+GGG 0.514585 3_1:-37130145 None:intergenic
AGAAGATTGAGGAAACAGTT+GGG 0.514812 3_1:+37129420 Msa0356880:CDS
ATGCCCTTGATTATGAGGTA+TGG 0.514840 3_1:+37129939 Msa0356880:CDS
GCATGGATTGTACCAGAATC+CGG 0.515418 3_1:-37129617 None:intergenic
GAAGGTGATTGGAAGATCAA+TGG 0.521850 3_1:-37130032 None:intergenic
CCATGCACATGGAGAGGAAA+CGG 0.527270 3_1:+37129634 Msa0356880:CDS
CCTCCTTACTCTTCTTGAGA+CGG 0.529375 3_1:-37130192 None:intergenic
TCAATTAGGGGAATCGGTAC+CGG 0.529894 3_1:-37129542 None:intergenic
AGGTATGGCTTGGTGATGAT+AGG 0.530326 3_1:+37129954 Msa0356880:CDS
GGATTTCTCAATACAGTGAA+GGG 0.538251 3_1:+37129377 Msa0356880:CDS
AAATTGCCTATTAGCAAAGA+AGG 0.540155 3_1:+37130160 Msa0356880:CDS
CTTGATTATGAGGTATGGCT+TGG 0.543545 3_1:+37129944 Msa0356880:CDS
ATGATGAGAGGAAAAGGTAC+AGG 0.545961 3_1:+37130088 Msa0356880:CDS
GTCATCATAAATCAATGTAA+CGG 0.547056 3_1:-37129666 None:intergenic
TATCATTCCTTATAAGGTGA+AGG 0.548759 3_1:+37129724 Msa0356880:CDS
CAAGCCATACCTCATAATCA+AGG 0.553144 3_1:-37129943 None:intergenic
AGTGCTGACCCAAAATCCTT+CGG 0.556973 3_1:-37130058 None:intergenic
TGGAAGGATCACTATACCAC+TGG 0.557200 3_1:+37129775 Msa0356880:CDS
TACCCGTCTCAAGAAGAGTA+AGG 0.565557 3_1:+37130189 Msa0356880:CDS
GGTACAGGATACACTATGAA+AGG 0.566561 3_1:+37130103 Msa0356880:CDS
AGGCAATTTCATCGCTCCAA+AGG 0.571299 3_1:-37130146 None:intergenic
TGGATTTCTCAATACAGTGA+AGG 0.575361 3_1:+37129376 Msa0356880:CDS
ATAGTGATCCTTCCAATCAC+AGG 0.589173 3_1:-37129767 None:intergenic
CTTGGTGATGATAGGATTGG+AGG 0.590333 3_1:+37129962 Msa0356880:CDS
ATCTCCGAAACATCTGCAGT+TGG 0.593488 3_1:-37129452 None:intergenic
AGGGGTGAAGAACAAAAGGA+AGG 0.598618 3_1:+37129341 Msa0356880:CDS
TACAATCCATGCACATGGAG+AGG 0.614846 3_1:+37129628 Msa0356880:CDS
ACATATGCTGATATTCAACC+GGG 0.617088 3_1:+37129698 Msa0356880:CDS
GGGTTTCATTCAAGACATTG+GGG 0.618306 3_1:+37129397 Msa0356880:CDS
TTGATGTTCCTGTGATTGGA+AGG 0.620198 3_1:+37129759 Msa0356880:CDS
AAGGAAGGTGAGGAAAAGGG+TGG 0.625777 3_1:+37129356 Msa0356880:CDS
AAGAAGAGTAAGGAGGATGG+TGG 0.626714 3_1:+37130199 Msa0356880:CDS
AAGCCATACCTCATAATCAA+GGG 0.628460 3_1:-37129942 None:intergenic
TGAAGAACAAAAGGAAGGTG+AGG 0.629320 3_1:+37129346 Msa0356880:CDS
CTCAAGAAGAGTAAGGAGGA+TGG 0.634584 3_1:+37130196 Msa0356880:CDS
TGGTGGAGATGATGATGATG+AGG 0.644185 3_1:+37130216 Msa0356880:CDS
CTTCAAATGAAGAATAGCAA+CGG 0.645167 3_1:-37129882 None:intergenic
GCACTTTGGGACATGATGAG+AGG 0.649658 3_1:+37130076 Msa0356880:CDS
CTATGTAGAGATGTCGACAT+CGG 0.653141 3_1:+37129298 None:intergenic
TCTGGTACAATCCATGCACA+TGG 0.653759 3_1:+37129623 Msa0356880:CDS
AAACCAGAAATAGTGAAAAG+GGG 0.654731 3_1:+37129323 Msa0356880:CDS
CCGTCTCAAGAAGAGTAAGG+AGG 0.673482 3_1:+37130192 Msa0356880:CDS
ATTTGGTTGAGAGCAATGGG+AGG 0.702091 3_1:+37129573 Msa0356880:CDS
AAATAGTTGATATCAATTAG+GGG 0.705787 3_1:-37129554 None:intergenic
TTGCCTATTAGCAAAGAAGG+CGG 0.725605 3_1:+37130163 Msa0356880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAGTTGATATCAATTAG+GGG - chr3_1:37129557-37129576 None:intergenic 20.0%
!!! CAAATAGTTGATATCAATTA+GGG - chr3_1:37129558-37129577 None:intergenic 20.0%
!!! AAATAGTTGATATCAATTAG+GGG - chr3_1:37129557-37129576 None:intergenic 20.0%
!!! CAAATAGTTGATATCAATTA+GGG - chr3_1:37129558-37129577 None:intergenic 20.0%
! ATAAACCAGAAATAGTGAAA+AGG + chr3_1:37129321-37129340 Msa0356880:CDS 25.0%
! TAAACCAGAAATAGTGAAAA+GGG + chr3_1:37129322-37129341 Msa0356880:CDS 25.0%
!! GCTTTGTCAAGATTAATTTT+AGG - chr3_1:37129485-37129504 None:intergenic 25.0%
!! CCAAATAGTTGATATCAATT+AGG - chr3_1:37129559-37129578 None:intergenic 25.0%
! CCTAATTGATATCAACTATT+TGG + chr3_1:37129556-37129575 Msa0356880:CDS 25.0%
! TCATCATAAATCAATGTAAC+GGG - chr3_1:37129668-37129687 None:intergenic 25.0%
! GTCATCATAAATCAATGTAA+CGG - chr3_1:37129669-37129688 None:intergenic 25.0%
!! ATTTTCTCAAGATCAATATC+AGG - chr3_1:37129833-37129852 None:intergenic 25.0%
!!! AACAAGAATGATTTTGACTT+AGG + chr3_1:37129911-37129930 Msa0356880:CDS 25.0%
! TCTGCAAAAATTGAAAAATG+TGG + chr3_1:37130001-37130020 Msa0356880:CDS 25.0%
! CTGCAAAAATTGAAAAATGT+GGG + chr3_1:37130002-37130021 Msa0356880:CDS 25.0%
! ATAAACCAGAAATAGTGAAA+AGG + chr3_1:37129321-37129340 Msa0356880:CDS 25.0%
! TAAACCAGAAATAGTGAAAA+GGG + chr3_1:37129322-37129341 Msa0356880:CDS 25.0%
!! GCTTTGTCAAGATTAATTTT+AGG - chr3_1:37129485-37129504 None:intergenic 25.0%
!! CCAAATAGTTGATATCAATT+AGG - chr3_1:37129559-37129578 None:intergenic 25.0%
! CCTAATTGATATCAACTATT+TGG + chr3_1:37129556-37129575 Msa0356880:CDS 25.0%
! TCATCATAAATCAATGTAAC+GGG - chr3_1:37129668-37129687 None:intergenic 25.0%
! GTCATCATAAATCAATGTAA+CGG - chr3_1:37129669-37129688 None:intergenic 25.0%
!! ATTTTCTCAAGATCAATATC+AGG - chr3_1:37129833-37129852 None:intergenic 25.0%
!!! AACAAGAATGATTTTGACTT+AGG + chr3_1:37129911-37129930 Msa0356880:CDS 25.0%
! TCTGCAAAAATTGAAAAATG+TGG + chr3_1:37130001-37130020 Msa0356880:CDS 25.0%
! CTGCAAAAATTGAAAAATGT+GGG + chr3_1:37130002-37130021 Msa0356880:CDS 25.0%
AAACCAGAAATAGTGAAAAG+GGG + chr3_1:37129323-37129342 Msa0356880:CDS 30.0%
TTGATATCAATTAGGGGAAT+CGG - chr3_1:37129551-37129570 None:intergenic 30.0%
TACATATGCTGATATTCAAC+CGG + chr3_1:37129697-37129716 Msa0356880:CDS 30.0%
TTATAAGGAATGATACTTCC+CGG - chr3_1:37129719-37129738 None:intergenic 30.0%
TATCATTCCTTATAAGGTGA+AGG + chr3_1:37129724-37129743 Msa0356880:CDS 30.0%
CTTCAAATGAAGAATAGCAA+CGG - chr3_1:37129885-37129904 None:intergenic 30.0%
! TGCTATTCTTCATTTGAAGT+TGG + chr3_1:37129886-37129905 Msa0356880:CDS 30.0%
AAATTGCCTATTAGCAAAGA+AGG + chr3_1:37130160-37130179 Msa0356880:CDS 30.0%
AAACCAGAAATAGTGAAAAG+GGG + chr3_1:37129323-37129342 Msa0356880:CDS 30.0%
TTGATATCAATTAGGGGAAT+CGG - chr3_1:37129551-37129570 None:intergenic 30.0%
TACATATGCTGATATTCAAC+CGG + chr3_1:37129697-37129716 Msa0356880:CDS 30.0%
TTATAAGGAATGATACTTCC+CGG - chr3_1:37129719-37129738 None:intergenic 30.0%
TATCATTCCTTATAAGGTGA+AGG + chr3_1:37129724-37129743 Msa0356880:CDS 30.0%
CTTCAAATGAAGAATAGCAA+CGG - chr3_1:37129885-37129904 None:intergenic 30.0%
! TGCTATTCTTCATTTGAAGT+TGG + chr3_1:37129886-37129905 Msa0356880:CDS 30.0%
AAATTGCCTATTAGCAAAGA+AGG + chr3_1:37130160-37130179 Msa0356880:CDS 30.0%
TGGATTTCTCAATACAGTGA+AGG + chr3_1:37129376-37129395 Msa0356880:CDS 35.0%
GGATTTCTCAATACAGTGAA+GGG + chr3_1:37129377-37129396 Msa0356880:CDS 35.0%
AAGGGTTTCATTCAAGACAT+TGG + chr3_1:37129395-37129414 Msa0356880:CDS 35.0%
AGGGTTTCATTCAAGACATT+GGG + chr3_1:37129396-37129415 Msa0356880:CDS 35.0%
AGAAGATTGAGGAAACAGTT+GGG + chr3_1:37129420-37129439 Msa0356880:CDS 35.0%
TCTCATAAAGAATCCGAATC+CGG + chr3_1:37129523-37129542 Msa0356880:CDS 35.0%
AACTATTTGGTTGAGAGCAA+TGG + chr3_1:37129569-37129588 Msa0356880:CDS 35.0%
ACTATTTGGTTGAGAGCAAT+GGG + chr3_1:37129570-37129589 Msa0356880:CDS 35.0%
ACATATGCTGATATTCAACC+GGG + chr3_1:37129698-37129717 Msa0356880:CDS 35.0%
!! GGGAAGTATCATTCCTTATA+AGG + chr3_1:37129718-37129737 Msa0356880:CDS 35.0%
AGATCAACCTTCACCTTATA+AGG - chr3_1:37129734-37129753 None:intergenic 35.0%
! ATAGTTGATGTTCCTGTGAT+TGG + chr3_1:37129755-37129774 Msa0356880:CDS 35.0%
ACTATACCACTGGAAAAAAC+TGG + chr3_1:37129785-37129804 Msa0356880:CDS 35.0%
!!! ATTTCTCCAGTTTTTTCCAG+TGG - chr3_1:37129794-37129813 None:intergenic 35.0%
ATATCAGGCTTGTATGGAAT+CGG - chr3_1:37129818-37129837 None:intergenic 35.0%
AGATCAATATCAGGCTTGTA+TGG - chr3_1:37129824-37129843 None:intergenic 35.0%
AAGCCATACCTCATAATCAA+GGG - chr3_1:37129945-37129964 None:intergenic 35.0%
TGGATTTCTCAATACAGTGA+AGG + chr3_1:37129376-37129395 Msa0356880:CDS 35.0%
GGATTTCTCAATACAGTGAA+GGG + chr3_1:37129377-37129396 Msa0356880:CDS 35.0%
AAGGGTTTCATTCAAGACAT+TGG + chr3_1:37129395-37129414 Msa0356880:CDS 35.0%
AGGGTTTCATTCAAGACATT+GGG + chr3_1:37129396-37129415 Msa0356880:CDS 35.0%
AGAAGATTGAGGAAACAGTT+GGG + chr3_1:37129420-37129439 Msa0356880:CDS 35.0%
TCTCATAAAGAATCCGAATC+CGG + chr3_1:37129523-37129542 Msa0356880:CDS 35.0%
AACTATTTGGTTGAGAGCAA+TGG + chr3_1:37129569-37129588 Msa0356880:CDS 35.0%
ACTATTTGGTTGAGAGCAAT+GGG + chr3_1:37129570-37129589 Msa0356880:CDS 35.0%
ACATATGCTGATATTCAACC+GGG + chr3_1:37129698-37129717 Msa0356880:CDS 35.0%
!! GGGAAGTATCATTCCTTATA+AGG + chr3_1:37129718-37129737 Msa0356880:CDS 35.0%
AGATCAACCTTCACCTTATA+AGG - chr3_1:37129734-37129753 None:intergenic 35.0%
! ATAGTTGATGTTCCTGTGAT+TGG + chr3_1:37129755-37129774 Msa0356880:CDS 35.0%
ACTATACCACTGGAAAAAAC+TGG + chr3_1:37129785-37129804 Msa0356880:CDS 35.0%
!!! ATTTCTCCAGTTTTTTCCAG+TGG - chr3_1:37129794-37129813 None:intergenic 35.0%
ATATCAGGCTTGTATGGAAT+CGG - chr3_1:37129818-37129837 None:intergenic 35.0%
AGATCAATATCAGGCTTGTA+TGG - chr3_1:37129824-37129843 None:intergenic 35.0%
AAGCCATACCTCATAATCAA+GGG - chr3_1:37129945-37129964 None:intergenic 35.0%
! TCACCCCTTTTCACTATTTC+TGG - chr3_1:37129329-37129348 None:intergenic 40.0%
GAAAAGGGGTGAAGAACAAA+AGG + chr3_1:37129337-37129356 Msa0356880:CDS 40.0%
TGAAGAACAAAAGGAAGGTG+AGG + chr3_1:37129346-37129365 Msa0356880:CDS 40.0%
ACAAAAGGAAGGTGAGGAAA+AGG + chr3_1:37129352-37129371 Msa0356880:CDS 40.0%
CAAAAGGAAGGTGAGGAAAA+GGG + chr3_1:37129353-37129372 Msa0356880:CDS 40.0%
GGGTTTCATTCAAGACATTG+GGG + chr3_1:37129397-37129416 Msa0356880:CDS 40.0%
GAGAAGATTGAGGAAACAGT+TGG + chr3_1:37129419-37129438 Msa0356880:CDS 40.0%
ATTGAGGAAACAGTTGGGTT+TGG + chr3_1:37129425-37129444 Msa0356880:CDS 40.0%
TTGAGGAAACAGTTGGGTTT+GGG + chr3_1:37129426-37129445 Msa0356880:CDS 40.0%
GAAACCAACTGCAGATGTTT+CGG + chr3_1:37129448-37129467 Msa0356880:CDS 40.0%
TTGATGTTCCTGTGATTGGA+AGG + chr3_1:37129759-37129778 Msa0356880:CDS 40.0%
ATAGTGATCCTTCCAATCAC+AGG - chr3_1:37129770-37129789 None:intergenic 40.0%
TATCAGGCTTGTATGGAATC+GGG - chr3_1:37129817-37129836 None:intergenic 40.0%
ACTCAATGCCCTTGATTATG+AGG + chr3_1:37129934-37129953 Msa0356880:CDS 40.0%
ATGCCCTTGATTATGAGGTA+TGG + chr3_1:37129939-37129958 Msa0356880:CDS 40.0%
CAAGCCATACCTCATAATCA+AGG - chr3_1:37129946-37129965 None:intergenic 40.0%
CTTGATTATGAGGTATGGCT+TGG + chr3_1:37129944-37129963 Msa0356880:CDS 40.0%
GAAGGTGATTGGAAGATCAA+TGG - chr3_1:37130035-37130054 None:intergenic 40.0%
TTGATCTTCCAATCACCTTC+AGG + chr3_1:37130035-37130054 Msa0356880:CDS 40.0%
! ATGATGAGAGGAAAAGGTAC+AGG + chr3_1:37130088-37130107 Msa0356880:CDS 40.0%
GGTACAGGATACACTATGAA+AGG + chr3_1:37130103-37130122 Msa0356880:CDS 40.0%
ATTGATGTTGACACACCCTT+TGG + chr3_1:37130130-37130149 Msa0356880:CDS 40.0%
TTGCCTATTAGCAAAGAAGG+CGG + chr3_1:37130163-37130182 Msa0356880:CDS 40.0%
! TCACCCCTTTTCACTATTTC+TGG - chr3_1:37129329-37129348 None:intergenic 40.0%
GAAAAGGGGTGAAGAACAAA+AGG + chr3_1:37129337-37129356 Msa0356880:CDS 40.0%
TGAAGAACAAAAGGAAGGTG+AGG + chr3_1:37129346-37129365 Msa0356880:CDS 40.0%
ACAAAAGGAAGGTGAGGAAA+AGG + chr3_1:37129352-37129371 Msa0356880:CDS 40.0%
CAAAAGGAAGGTGAGGAAAA+GGG + chr3_1:37129353-37129372 Msa0356880:CDS 40.0%
GGGTTTCATTCAAGACATTG+GGG + chr3_1:37129397-37129416 Msa0356880:CDS 40.0%
GAGAAGATTGAGGAAACAGT+TGG + chr3_1:37129419-37129438 Msa0356880:CDS 40.0%
ATTGAGGAAACAGTTGGGTT+TGG + chr3_1:37129425-37129444 Msa0356880:CDS 40.0%
TTGAGGAAACAGTTGGGTTT+GGG + chr3_1:37129426-37129445 Msa0356880:CDS 40.0%
GAAACCAACTGCAGATGTTT+CGG + chr3_1:37129448-37129467 Msa0356880:CDS 40.0%
TTGATGTTCCTGTGATTGGA+AGG + chr3_1:37129759-37129778 Msa0356880:CDS 40.0%
ATAGTGATCCTTCCAATCAC+AGG - chr3_1:37129770-37129789 None:intergenic 40.0%
TATCAGGCTTGTATGGAATC+GGG - chr3_1:37129817-37129836 None:intergenic 40.0%
ACTCAATGCCCTTGATTATG+AGG + chr3_1:37129934-37129953 Msa0356880:CDS 40.0%
ATGCCCTTGATTATGAGGTA+TGG + chr3_1:37129939-37129958 Msa0356880:CDS 40.0%
CAAGCCATACCTCATAATCA+AGG - chr3_1:37129946-37129965 None:intergenic 40.0%
CTTGATTATGAGGTATGGCT+TGG + chr3_1:37129944-37129963 Msa0356880:CDS 40.0%
GAAGGTGATTGGAAGATCAA+TGG - chr3_1:37130035-37130054 None:intergenic 40.0%
TTGATCTTCCAATCACCTTC+AGG + chr3_1:37130035-37130054 Msa0356880:CDS 40.0%
! ATGATGAGAGGAAAAGGTAC+AGG + chr3_1:37130088-37130107 Msa0356880:CDS 40.0%
GGTACAGGATACACTATGAA+AGG + chr3_1:37130103-37130122 Msa0356880:CDS 40.0%
ATTGATGTTGACACACCCTT+TGG + chr3_1:37130130-37130149 Msa0356880:CDS 40.0%
TTGCCTATTAGCAAAGAAGG+CGG + chr3_1:37130163-37130182 Msa0356880:CDS 40.0%
AGGGGTGAAGAACAAAAGGA+AGG + chr3_1:37129341-37129360 Msa0356880:CDS 45.0%
AGACATTGGGGAGAAGATTG+AGG + chr3_1:37129409-37129428 Msa0356880:CDS 45.0%
ATCTCCGAAACATCTGCAGT+TGG - chr3_1:37129455-37129474 None:intergenic 45.0%
TCAATTAGGGGAATCGGTAC+CGG - chr3_1:37129545-37129564 None:intergenic 45.0%
ATTTGGTTGAGAGCAATGGG+AGG + chr3_1:37129573-37129592 Msa0356880:CDS 45.0%
! CAATGGGAGGAAGCTAGTTT+CGG + chr3_1:37129586-37129605 Msa0356880:CDS 45.0%
! AATGGGAGGAAGCTAGTTTC+GGG + chr3_1:37129587-37129606 Msa0356880:CDS 45.0%
!! GCTAGTTTCGGGTTTGATAC+CGG + chr3_1:37129598-37129617 Msa0356880:CDS 45.0%
! GCATGGATTGTACCAGAATC+CGG - chr3_1:37129620-37129639 None:intergenic 45.0%
TCTGGTACAATCCATGCACA+TGG + chr3_1:37129623-37129642 Msa0356880:CDS 45.0%
TACAATCCATGCACATGGAG+AGG + chr3_1:37129628-37129647 Msa0356880:CDS 45.0%
TGGAAGGATCACTATACCAC+TGG + chr3_1:37129775-37129794 Msa0356880:CDS 45.0%
!! AGGTATGGCTTGGTGATGAT+AGG + chr3_1:37129954-37129973 Msa0356880:CDS 45.0%
!! TGGCTTGGTGATGATAGGAT+TGG + chr3_1:37129959-37129978 Msa0356880:CDS 45.0%
!! CTTGGTGATGATAGGATTGG+AGG + chr3_1:37129962-37129981 Msa0356880:CDS 45.0%
!! AGTGCTGACCCAAAATCCTT+CGG - chr3_1:37130061-37130080 None:intergenic 45.0%
!! AGGATTTTGGGTCAGCACTT+TGG + chr3_1:37130062-37130081 Msa0356880:CDS 45.0%
!! GGATTTTGGGTCAGCACTTT+GGG + chr3_1:37130063-37130082 Msa0356880:CDS 45.0%
TGGGACATGATGAGAGGAAA+AGG + chr3_1:37130082-37130101 Msa0356880:CDS 45.0%
GGCAATTTCATCGCTCCAAA+GGG - chr3_1:37130148-37130167 None:intergenic 45.0%
AGGCAATTTCATCGCTCCAA+AGG - chr3_1:37130149-37130168 None:intergenic 45.0%
GTACCGCCTTCTTTGCTAAT+AGG - chr3_1:37130169-37130188 None:intergenic 45.0%
TACCCGTCTCAAGAAGAGTA+AGG + chr3_1:37130189-37130208 Msa0356880:CDS 45.0%
CTCCTTACTCTTCTTGAGAC+GGG - chr3_1:37130194-37130213 None:intergenic 45.0%
CCTCCTTACTCTTCTTGAGA+CGG - chr3_1:37130195-37130214 None:intergenic 45.0%
CTCAAGAAGAGTAAGGAGGA+TGG + chr3_1:37130196-37130215 Msa0356880:CDS 45.0%
AAGAAGAGTAAGGAGGATGG+TGG + chr3_1:37130199-37130218 Msa0356880:CDS 45.0%
! TGGTGGAGATGATGATGATG+AGG + chr3_1:37130216-37130235 Msa0356880:CDS 45.0%
AGGGGTGAAGAACAAAAGGA+AGG + chr3_1:37129341-37129360 Msa0356880:CDS 45.0%
AGACATTGGGGAGAAGATTG+AGG + chr3_1:37129409-37129428 Msa0356880:CDS 45.0%
ATCTCCGAAACATCTGCAGT+TGG - chr3_1:37129455-37129474 None:intergenic 45.0%
TCAATTAGGGGAATCGGTAC+CGG - chr3_1:37129545-37129564 None:intergenic 45.0%
ATTTGGTTGAGAGCAATGGG+AGG + chr3_1:37129573-37129592 Msa0356880:CDS 45.0%
! CAATGGGAGGAAGCTAGTTT+CGG + chr3_1:37129586-37129605 Msa0356880:CDS 45.0%
! AATGGGAGGAAGCTAGTTTC+GGG + chr3_1:37129587-37129606 Msa0356880:CDS 45.0%
!! GCTAGTTTCGGGTTTGATAC+CGG + chr3_1:37129598-37129617 Msa0356880:CDS 45.0%
! GCATGGATTGTACCAGAATC+CGG - chr3_1:37129620-37129639 None:intergenic 45.0%
TCTGGTACAATCCATGCACA+TGG + chr3_1:37129623-37129642 Msa0356880:CDS 45.0%
TACAATCCATGCACATGGAG+AGG + chr3_1:37129628-37129647 Msa0356880:CDS 45.0%
TGGAAGGATCACTATACCAC+TGG + chr3_1:37129775-37129794 Msa0356880:CDS 45.0%
!! AGGTATGGCTTGGTGATGAT+AGG + chr3_1:37129954-37129973 Msa0356880:CDS 45.0%
!! TGGCTTGGTGATGATAGGAT+TGG + chr3_1:37129959-37129978 Msa0356880:CDS 45.0%
!! CTTGGTGATGATAGGATTGG+AGG + chr3_1:37129962-37129981 Msa0356880:CDS 45.0%
!! AGTGCTGACCCAAAATCCTT+CGG - chr3_1:37130061-37130080 None:intergenic 45.0%
!! AGGATTTTGGGTCAGCACTT+TGG + chr3_1:37130062-37130081 Msa0356880:CDS 45.0%
!! GGATTTTGGGTCAGCACTTT+GGG + chr3_1:37130063-37130082 Msa0356880:CDS 45.0%
TGGGACATGATGAGAGGAAA+AGG + chr3_1:37130082-37130101 Msa0356880:CDS 45.0%
GGCAATTTCATCGCTCCAAA+GGG - chr3_1:37130148-37130167 None:intergenic 45.0%
AGGCAATTTCATCGCTCCAA+AGG - chr3_1:37130149-37130168 None:intergenic 45.0%
GTACCGCCTTCTTTGCTAAT+AGG - chr3_1:37130169-37130188 None:intergenic 45.0%
TACCCGTCTCAAGAAGAGTA+AGG + chr3_1:37130189-37130208 Msa0356880:CDS 45.0%
CTCCTTACTCTTCTTGAGAC+GGG - chr3_1:37130194-37130213 None:intergenic 45.0%
CCTCCTTACTCTTCTTGAGA+CGG - chr3_1:37130195-37130214 None:intergenic 45.0%
CTCAAGAAGAGTAAGGAGGA+TGG + chr3_1:37130196-37130215 Msa0356880:CDS 45.0%
AAGAAGAGTAAGGAGGATGG+TGG + chr3_1:37130199-37130218 Msa0356880:CDS 45.0%
! TGGTGGAGATGATGATGATG+AGG + chr3_1:37130216-37130235 Msa0356880:CDS 45.0%
AAGGAAGGTGAGGAAAAGGG+TGG + chr3_1:37129356-37129375 Msa0356880:CDS 50.0%
TCGGGTTTGATACCGGATTC+TGG + chr3_1:37129605-37129624 Msa0356880:CDS 50.0%
CCATGCACATGGAGAGGAAA+CGG + chr3_1:37129634-37129653 Msa0356880:CDS 50.0%
! ACCTTCAGGCCGAAGGATTT+TGG + chr3_1:37130049-37130068 Msa0356880:CDS 50.0%
! CCTTCAGGCCGAAGGATTTT+GGG + chr3_1:37130050-37130069 Msa0356880:CDS 50.0%
!! GCACTTTGGGACATGATGAG+AGG + chr3_1:37130076-37130095 Msa0356880:CDS 50.0%
CCGTCTCAAGAAGAGTAAGG+AGG + chr3_1:37130192-37130211 Msa0356880:CDS 50.0%
AAGGAAGGTGAGGAAAAGGG+TGG + chr3_1:37129356-37129375 Msa0356880:CDS 50.0%
TCGGGTTTGATACCGGATTC+TGG + chr3_1:37129605-37129624 Msa0356880:CDS 50.0%
CCATGCACATGGAGAGGAAA+CGG + chr3_1:37129634-37129653 Msa0356880:CDS 50.0%
! ACCTTCAGGCCGAAGGATTT+TGG + chr3_1:37130049-37130068 Msa0356880:CDS 50.0%
! CCTTCAGGCCGAAGGATTTT+GGG + chr3_1:37130050-37130069 Msa0356880:CDS 50.0%
!! GCACTTTGGGACATGATGAG+AGG + chr3_1:37130076-37130095 Msa0356880:CDS 50.0%
CCGTCTCAAGAAGAGTAAGG+AGG + chr3_1:37130192-37130211 Msa0356880:CDS 50.0%
! AGGGGAATCGGTACCGGATT+CGG - chr3_1:37129539-37129558 None:intergenic 55.0%
CCGTTTCCTCTCCATGTGCA+TGG - chr3_1:37129637-37129656 None:intergenic 55.0%
TCCAATCACCTTCAGGCCGA+AGG + chr3_1:37130042-37130061 Msa0356880:CDS 55.0%
TCCTTCGGCCTGAAGGTGAT+TGG - chr3_1:37130046-37130065 None:intergenic 55.0%
CCCAAAATCCTTCGGCCTGA+AGG - chr3_1:37130053-37130072 None:intergenic 55.0%
! AGGGGAATCGGTACCGGATT+CGG - chr3_1:37129539-37129558 None:intergenic 55.0%
CCGTTTCCTCTCCATGTGCA+TGG - chr3_1:37129637-37129656 None:intergenic 55.0%
TCCAATCACCTTCAGGCCGA+AGG + chr3_1:37130042-37130061 Msa0356880:CDS 55.0%
TCCTTCGGCCTGAAGGTGAT+TGG - chr3_1:37130046-37130065 None:intergenic 55.0%
CCCAAAATCCTTCGGCCTGA+AGG - chr3_1:37130053-37130072 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 37129308 37130243 37129308 ID=Msa0356880;Name=Msa0356880
chr3_1 mRNA 37129308 37130243 37129308 ID=Msa0356880-mRNA-1;Parent=Msa0356880;Name=Msa0356880-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|311
chr3_1 exon 37129308 37130243 37129308 ID=Msa0356880-mRNA-1:exon:6732;Parent=Msa0356880-mRNA-1
chr3_1 CDS 37129308 37130243 37129308 ID=Msa0356880-mRNA-1:cds;Parent=Msa0356880-mRNA-1
Gene Sequence

>Msa0356880

ATGTCGACATCGGATAAACCAGAAATAGTGAAAAGGGGTGAAGAACAAAAGGAAGGTGAGGAAAAGGGTGGATTTCTCAATACAGTGAAGGGTTTCATTCAAGACATTGGGGAGAAGATTGAGGAAACAGTTGGGTTTGGGAAACCAACTGCAGATGTTTCGGAGATACACATTCCTAAAATTAATCTTGACAAAGCAGATCTTGTTGTTGATATTCTCATAAAGAATCCGAATCCGGTACCGATTCCCCTAATTGATATCAACTATTTGGTTGAGAGCAATGGGAGGAAGCTAGTTTCGGGTTTGATACCGGATTCTGGTACAATCCATGCACATGGAGAGGAAACGGTAAAAATTCCCGTTACATTGATTTATGATGACATAAAAAATACATATGCTGATATTCAACCGGGAAGTATCATTCCTTATAAGGTGAAGGTTGATCTCATAGTTGATGTTCCTGTGATTGGAAGGATCACTATACCACTGGAAAAAACTGGAGAAATCCCGATTCCATACAAGCCTGATATTGATCTTGAGAAAATTCAGTTTAAGAGTTTCTCTTTTGAAGAGACCGTTGCTATTCTTCATTTGAAGTTGGATAACAAGAATGATTTTGACTTAGGACTCAATGCCCTTGATTATGAGGTATGGCTTGGTGATGATAGGATTGGAGGTGCTGATCTTGCAAAGTCTGCAAAAATTGAAAAATGTGGGATTACTTCCATTGATCTTCCAATCACCTTCAGGCCGAAGGATTTTGGGTCAGCACTTTGGGACATGATGAGAGGAAAAGGTACAGGATACACTATGAAAGGACATATTGATGTTGACACACCCTTTGGAGCGATGAAATTGCCTATTAGCAAAGAAGGCGGTACTACCCGTCTCAAGAAGAGTAAGGAGGATGGTGGAGATGATGATGATGAGGTTTGA

Protein sequence

>Msa0356880

MSTSDKPEIVKRGEEQKEGEEKGGFLNTVKGFIQDIGEKIEETVGFGKPTADVSEIHIPKINLDKADLVVDILIKNPNPVPIPLIDINYLVESNGRKLVSGLIPDSGTIHAHGEETVKIPVTLIYDDIKNTYADIQPGSIIPYKVKVDLIVDVPVIGRITIPLEKTGEIPIPYKPDIDLEKIQFKSFSFEETVAILHLKLDNKNDFDLGLNALDYEVWLGDDRIGGADLAKSAKIEKCGITSIDLPITFRPKDFGSALWDMMRGKGTGYTMKGHIDVDTPFGAMKLPISKEGGTTRLKKSKEDGGDDDDEV*