Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356880 | XP_024635454.1 | 96.129 | 310 | 12 | 0 | 1 | 310 | 1 | 310 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356880 | sp|P46519|LEA14_SOYBN | 31.387 | 137 | 94 | 0 | 41 | 177 | 14 | 150 | 8.42e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356880 | A0A072V5S0 | 96.129 | 310 | 12 | 0 | 1 | 310 | 1 | 310 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0170320 | Msa0356880 | 0.815610 | 8.462428e-52 | -8.615850e-47 |
| Msa0204210 | Msa0356880 | 0.808732 | 2.680780e-50 | -8.615850e-47 |
| Msa0226620 | Msa0356880 | -0.824963 | 6.070009e-54 | -8.615850e-47 |
| Msa0260270 | Msa0356880 | -0.814717 | 1.336335e-51 | -8.615850e-47 |
| Msa0356880 | Msa0388540 | -0.800685 | 1.283652e-48 | -8.615850e-47 |
| Msa0356880 | Msa0426820 | -0.826888 | 2.118921e-54 | -8.615850e-47 |
| Msa0356880 | Msa0449760 | 0.853136 | 2.916853e-61 | -8.615850e-47 |
| Msa0356880 | Msa0465680 | -0.800763 | 1.237412e-48 | -8.615850e-47 |
| Msa0356880 | Msa0528970 | 0.804521 | 2.076081e-49 | -8.615850e-47 |
| Msa0356880 | Msa0613480 | 0.801258 | 9.799683e-49 | -8.615850e-47 |
| Msa0356880 | Msa0935970 | 0.809281 | 2.044603e-50 | -8.615850e-47 |
| Msa0356880 | Msa0942080 | -0.812760 | 3.604333e-51 | -8.615850e-47 |
| Msa0356880 | Msa1252070 | 0.813465 | 2.524800e-51 | -8.615850e-47 |
| Msa0356880 | Msa1457670 | -0.802027 | 6.815724e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356880 | MtrunA17_Chr3g0093721 | 96.129 | 310 | 12 | 0 | 1 | 310 | 1 | 310 | 0.0 | 589 |
| Msa0356880 | MtrunA17_Chr5g0441301 | 78.846 | 312 | 55 | 3 | 1 | 301 | 1 | 312 | 3.14e-169 | 472 |
| Msa0356880 | MtrunA17_Chr8g0348171 | 31.757 | 148 | 95 | 2 | 25 | 172 | 4 | 145 | 2.67e-21 | 88.6 |
| Msa0356880 | MtrunA17_Chr7g0248741 | 27.703 | 148 | 101 | 1 | 25 | 172 | 3 | 144 | 1.85e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0356880 | AT2G44060.2 | 71.698 | 318 | 69 | 3 | 1 | 299 | 1 | 316 | 4.74e-159 | 447 |
| Msa0356880 | AT2G44060.1 | 71.698 | 318 | 69 | 3 | 1 | 299 | 1 | 316 | 4.74e-159 | 447 |
| Msa0356880 | AT2G46140.1 | 29.878 | 164 | 105 | 2 | 13 | 172 | 3 | 160 | 2.75e-17 | 78.2 |
| Msa0356880 | AT1G01470.1 | 28.667 | 150 | 101 | 1 | 23 | 172 | 2 | 145 | 4.16e-17 | 77.4 |
Find 91 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATTGATATCAACTATT+TGG | 0.160309 | 3_1:+37129556 | Msa0356880:CDS |
| ACCTTCAGGCCGAAGGATTT+TGG | 0.160524 | 3_1:+37130049 | Msa0356880:CDS |
| CCAAATAGTTGATATCAATT+AGG | 0.211621 | 3_1:-37129556 | None:intergenic |
| CAAATAGTTGATATCAATTA+GGG | 0.261436 | 3_1:-37129555 | None:intergenic |
| GTACCGCCTTCTTTGCTAAT+AGG | 0.281765 | 3_1:-37130166 | None:intergenic |
| AGATCAACCTTCACCTTATA+AGG | 0.293664 | 3_1:-37129731 | None:intergenic |
| GGGAAGTATCATTCCTTATA+AGG | 0.326085 | 3_1:+37129718 | Msa0356880:CDS |
| AGGGGAATCGGTACCGGATT+CGG | 0.326651 | 3_1:-37129536 | None:intergenic |
| TTGAGGAAACAGTTGGGTTT+GGG | 0.329702 | 3_1:+37129426 | Msa0356880:CDS |
| TCGGGTTTGATACCGGATTC+TGG | 0.343130 | 3_1:+37129605 | Msa0356880:CDS |
| CAATGGGAGGAAGCTAGTTT+CGG | 0.352375 | 3_1:+37129586 | Msa0356880:CDS |
| ATTGAGGAAACAGTTGGGTT+TGG | 0.356214 | 3_1:+37129425 | Msa0356880:CDS |
| AGGGTTTCATTCAAGACATT+GGG | 0.374827 | 3_1:+37129396 | Msa0356880:CDS |
| TACATATGCTGATATTCAAC+CGG | 0.384028 | 3_1:+37129697 | Msa0356880:CDS |
| GAAACCAACTGCAGATGTTT+CGG | 0.390895 | 3_1:+37129448 | Msa0356880:CDS |
| ATAGTTGATGTTCCTGTGAT+TGG | 0.392201 | 3_1:+37129755 | Msa0356880:CDS |
| ATTGATGTTGACACACCCTT+TGG | 0.403399 | 3_1:+37130130 | Msa0356880:CDS |
| TTGATCTTCCAATCACCTTC+AGG | 0.405514 | 3_1:+37130035 | Msa0356880:CDS |
| ATATCAGGCTTGTATGGAAT+CGG | 0.407998 | 3_1:-37129815 | None:intergenic |
| TAAACCAGAAATAGTGAAAA+GGG | 0.409076 | 3_1:+37129322 | Msa0356880:CDS |
| TTATAAGGAATGATACTTCC+CGG | 0.412721 | 3_1:-37129716 | None:intergenic |
| ACAAAAGGAAGGTGAGGAAA+AGG | 0.421788 | 3_1:+37129352 | Msa0356880:CDS |
| AGATCAATATCAGGCTTGTA+TGG | 0.422032 | 3_1:-37129821 | None:intergenic |
| TGCTATTCTTCATTTGAAGT+TGG | 0.426339 | 3_1:+37129886 | Msa0356880:CDS |
| ACTCAATGCCCTTGATTATG+AGG | 0.431327 | 3_1:+37129934 | Msa0356880:CDS |
| TCCTTCGGCCTGAAGGTGAT+TGG | 0.431595 | 3_1:-37130043 | None:intergenic |
| AATGGGAGGAAGCTAGTTTC+GGG | 0.434332 | 3_1:+37129587 | Msa0356880:CDS |
| TCATCATAAATCAATGTAAC+GGG | 0.441391 | 3_1:-37129665 | None:intergenic |
| CCCAAAATCCTTCGGCCTGA+AGG | 0.452825 | 3_1:-37130050 | None:intergenic |
| AACTATTTGGTTGAGAGCAA+TGG | 0.459231 | 3_1:+37129569 | Msa0356880:CDS |
| ACTATTTGGTTGAGAGCAAT+GGG | 0.460565 | 3_1:+37129570 | Msa0356880:CDS |
| ATAAACCAGAAATAGTGAAA+AGG | 0.464547 | 3_1:+37129321 | Msa0356880:CDS |
| GAAAAGGGGTGAAGAACAAA+AGG | 0.467028 | 3_1:+37129337 | Msa0356880:CDS |
| TTGATATCAATTAGGGGAAT+CGG | 0.467335 | 3_1:-37129548 | None:intergenic |
| CCGTTTCCTCTCCATGTGCA+TGG | 0.475213 | 3_1:-37129634 | None:intergenic |
| GCTAGTTTCGGGTTTGATAC+CGG | 0.478481 | 3_1:+37129598 | Msa0356880:CDS |
| CAAAAGGAAGGTGAGGAAAA+GGG | 0.483494 | 3_1:+37129353 | Msa0356880:CDS |
| AAGGGTTTCATTCAAGACAT+TGG | 0.489962 | 3_1:+37129395 | Msa0356880:CDS |
| AGACATTGGGGAGAAGATTG+AGG | 0.492962 | 3_1:+37129409 | Msa0356880:CDS |
| GAGAAGATTGAGGAAACAGT+TGG | 0.495120 | 3_1:+37129419 | Msa0356880:CDS |
| CTCCTTACTCTTCTTGAGAC+GGG | 0.498996 | 3_1:-37130191 | None:intergenic |
| TATCAGGCTTGTATGGAATC+GGG | 0.508761 | 3_1:-37129814 | None:intergenic |
| TGGCTTGGTGATGATAGGAT+TGG | 0.510174 | 3_1:+37129959 | Msa0356880:CDS |
| TCTCATAAAGAATCCGAATC+CGG | 0.510443 | 3_1:+37129523 | Msa0356880:CDS |
| TGGGACATGATGAGAGGAAA+AGG | 0.514116 | 3_1:+37130082 | Msa0356880:CDS |
| TCCAATCACCTTCAGGCCGA+AGG | 0.514304 | 3_1:+37130042 | Msa0356880:CDS |
| GGCAATTTCATCGCTCCAAA+GGG | 0.514585 | 3_1:-37130145 | None:intergenic |
| AGAAGATTGAGGAAACAGTT+GGG | 0.514812 | 3_1:+37129420 | Msa0356880:CDS |
| ATGCCCTTGATTATGAGGTA+TGG | 0.514840 | 3_1:+37129939 | Msa0356880:CDS |
| GCATGGATTGTACCAGAATC+CGG | 0.515418 | 3_1:-37129617 | None:intergenic |
| GAAGGTGATTGGAAGATCAA+TGG | 0.521850 | 3_1:-37130032 | None:intergenic |
| CCATGCACATGGAGAGGAAA+CGG | 0.527270 | 3_1:+37129634 | Msa0356880:CDS |
| CCTCCTTACTCTTCTTGAGA+CGG | 0.529375 | 3_1:-37130192 | None:intergenic |
| TCAATTAGGGGAATCGGTAC+CGG | 0.529894 | 3_1:-37129542 | None:intergenic |
| AGGTATGGCTTGGTGATGAT+AGG | 0.530326 | 3_1:+37129954 | Msa0356880:CDS |
| GGATTTCTCAATACAGTGAA+GGG | 0.538251 | 3_1:+37129377 | Msa0356880:CDS |
| AAATTGCCTATTAGCAAAGA+AGG | 0.540155 | 3_1:+37130160 | Msa0356880:CDS |
| CTTGATTATGAGGTATGGCT+TGG | 0.543545 | 3_1:+37129944 | Msa0356880:CDS |
| ATGATGAGAGGAAAAGGTAC+AGG | 0.545961 | 3_1:+37130088 | Msa0356880:CDS |
| GTCATCATAAATCAATGTAA+CGG | 0.547056 | 3_1:-37129666 | None:intergenic |
| TATCATTCCTTATAAGGTGA+AGG | 0.548759 | 3_1:+37129724 | Msa0356880:CDS |
| CAAGCCATACCTCATAATCA+AGG | 0.553144 | 3_1:-37129943 | None:intergenic |
| AGTGCTGACCCAAAATCCTT+CGG | 0.556973 | 3_1:-37130058 | None:intergenic |
| TGGAAGGATCACTATACCAC+TGG | 0.557200 | 3_1:+37129775 | Msa0356880:CDS |
| TACCCGTCTCAAGAAGAGTA+AGG | 0.565557 | 3_1:+37130189 | Msa0356880:CDS |
| GGTACAGGATACACTATGAA+AGG | 0.566561 | 3_1:+37130103 | Msa0356880:CDS |
| AGGCAATTTCATCGCTCCAA+AGG | 0.571299 | 3_1:-37130146 | None:intergenic |
| TGGATTTCTCAATACAGTGA+AGG | 0.575361 | 3_1:+37129376 | Msa0356880:CDS |
| ATAGTGATCCTTCCAATCAC+AGG | 0.589173 | 3_1:-37129767 | None:intergenic |
| CTTGGTGATGATAGGATTGG+AGG | 0.590333 | 3_1:+37129962 | Msa0356880:CDS |
| ATCTCCGAAACATCTGCAGT+TGG | 0.593488 | 3_1:-37129452 | None:intergenic |
| AGGGGTGAAGAACAAAAGGA+AGG | 0.598618 | 3_1:+37129341 | Msa0356880:CDS |
| TACAATCCATGCACATGGAG+AGG | 0.614846 | 3_1:+37129628 | Msa0356880:CDS |
| ACATATGCTGATATTCAACC+GGG | 0.617088 | 3_1:+37129698 | Msa0356880:CDS |
| GGGTTTCATTCAAGACATTG+GGG | 0.618306 | 3_1:+37129397 | Msa0356880:CDS |
| TTGATGTTCCTGTGATTGGA+AGG | 0.620198 | 3_1:+37129759 | Msa0356880:CDS |
| AAGGAAGGTGAGGAAAAGGG+TGG | 0.625777 | 3_1:+37129356 | Msa0356880:CDS |
| AAGAAGAGTAAGGAGGATGG+TGG | 0.626714 | 3_1:+37130199 | Msa0356880:CDS |
| AAGCCATACCTCATAATCAA+GGG | 0.628460 | 3_1:-37129942 | None:intergenic |
| TGAAGAACAAAAGGAAGGTG+AGG | 0.629320 | 3_1:+37129346 | Msa0356880:CDS |
| CTCAAGAAGAGTAAGGAGGA+TGG | 0.634584 | 3_1:+37130196 | Msa0356880:CDS |
| TGGTGGAGATGATGATGATG+AGG | 0.644185 | 3_1:+37130216 | Msa0356880:CDS |
| CTTCAAATGAAGAATAGCAA+CGG | 0.645167 | 3_1:-37129882 | None:intergenic |
| GCACTTTGGGACATGATGAG+AGG | 0.649658 | 3_1:+37130076 | Msa0356880:CDS |
| CTATGTAGAGATGTCGACAT+CGG | 0.653141 | 3_1:+37129298 | None:intergenic |
| TCTGGTACAATCCATGCACA+TGG | 0.653759 | 3_1:+37129623 | Msa0356880:CDS |
| AAACCAGAAATAGTGAAAAG+GGG | 0.654731 | 3_1:+37129323 | Msa0356880:CDS |
| CCGTCTCAAGAAGAGTAAGG+AGG | 0.673482 | 3_1:+37130192 | Msa0356880:CDS |
| ATTTGGTTGAGAGCAATGGG+AGG | 0.702091 | 3_1:+37129573 | Msa0356880:CDS |
| AAATAGTTGATATCAATTAG+GGG | 0.705787 | 3_1:-37129554 | None:intergenic |
| TTGCCTATTAGCAAAGAAGG+CGG | 0.725605 | 3_1:+37130163 | Msa0356880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAGTTGATATCAATTAG+GGG | - | chr3_1:37129557-37129576 | None:intergenic | 20.0% |
| !!! | CAAATAGTTGATATCAATTA+GGG | - | chr3_1:37129558-37129577 | None:intergenic | 20.0% |
| !!! | AAATAGTTGATATCAATTAG+GGG | - | chr3_1:37129557-37129576 | None:intergenic | 20.0% |
| !!! | CAAATAGTTGATATCAATTA+GGG | - | chr3_1:37129558-37129577 | None:intergenic | 20.0% |
| ! | ATAAACCAGAAATAGTGAAA+AGG | + | chr3_1:37129321-37129340 | Msa0356880:CDS | 25.0% |
| ! | TAAACCAGAAATAGTGAAAA+GGG | + | chr3_1:37129322-37129341 | Msa0356880:CDS | 25.0% |
| !! | GCTTTGTCAAGATTAATTTT+AGG | - | chr3_1:37129485-37129504 | None:intergenic | 25.0% |
| !! | CCAAATAGTTGATATCAATT+AGG | - | chr3_1:37129559-37129578 | None:intergenic | 25.0% |
| ! | CCTAATTGATATCAACTATT+TGG | + | chr3_1:37129556-37129575 | Msa0356880:CDS | 25.0% |
| ! | TCATCATAAATCAATGTAAC+GGG | - | chr3_1:37129668-37129687 | None:intergenic | 25.0% |
| ! | GTCATCATAAATCAATGTAA+CGG | - | chr3_1:37129669-37129688 | None:intergenic | 25.0% |
| !! | ATTTTCTCAAGATCAATATC+AGG | - | chr3_1:37129833-37129852 | None:intergenic | 25.0% |
| !!! | AACAAGAATGATTTTGACTT+AGG | + | chr3_1:37129911-37129930 | Msa0356880:CDS | 25.0% |
| ! | TCTGCAAAAATTGAAAAATG+TGG | + | chr3_1:37130001-37130020 | Msa0356880:CDS | 25.0% |
| ! | CTGCAAAAATTGAAAAATGT+GGG | + | chr3_1:37130002-37130021 | Msa0356880:CDS | 25.0% |
| ! | ATAAACCAGAAATAGTGAAA+AGG | + | chr3_1:37129321-37129340 | Msa0356880:CDS | 25.0% |
| ! | TAAACCAGAAATAGTGAAAA+GGG | + | chr3_1:37129322-37129341 | Msa0356880:CDS | 25.0% |
| !! | GCTTTGTCAAGATTAATTTT+AGG | - | chr3_1:37129485-37129504 | None:intergenic | 25.0% |
| !! | CCAAATAGTTGATATCAATT+AGG | - | chr3_1:37129559-37129578 | None:intergenic | 25.0% |
| ! | CCTAATTGATATCAACTATT+TGG | + | chr3_1:37129556-37129575 | Msa0356880:CDS | 25.0% |
| ! | TCATCATAAATCAATGTAAC+GGG | - | chr3_1:37129668-37129687 | None:intergenic | 25.0% |
| ! | GTCATCATAAATCAATGTAA+CGG | - | chr3_1:37129669-37129688 | None:intergenic | 25.0% |
| !! | ATTTTCTCAAGATCAATATC+AGG | - | chr3_1:37129833-37129852 | None:intergenic | 25.0% |
| !!! | AACAAGAATGATTTTGACTT+AGG | + | chr3_1:37129911-37129930 | Msa0356880:CDS | 25.0% |
| ! | TCTGCAAAAATTGAAAAATG+TGG | + | chr3_1:37130001-37130020 | Msa0356880:CDS | 25.0% |
| ! | CTGCAAAAATTGAAAAATGT+GGG | + | chr3_1:37130002-37130021 | Msa0356880:CDS | 25.0% |
| AAACCAGAAATAGTGAAAAG+GGG | + | chr3_1:37129323-37129342 | Msa0356880:CDS | 30.0% | |
| TTGATATCAATTAGGGGAAT+CGG | - | chr3_1:37129551-37129570 | None:intergenic | 30.0% | |
| TACATATGCTGATATTCAAC+CGG | + | chr3_1:37129697-37129716 | Msa0356880:CDS | 30.0% | |
| TTATAAGGAATGATACTTCC+CGG | - | chr3_1:37129719-37129738 | None:intergenic | 30.0% | |
| TATCATTCCTTATAAGGTGA+AGG | + | chr3_1:37129724-37129743 | Msa0356880:CDS | 30.0% | |
| CTTCAAATGAAGAATAGCAA+CGG | - | chr3_1:37129885-37129904 | None:intergenic | 30.0% | |
| ! | TGCTATTCTTCATTTGAAGT+TGG | + | chr3_1:37129886-37129905 | Msa0356880:CDS | 30.0% |
| AAATTGCCTATTAGCAAAGA+AGG | + | chr3_1:37130160-37130179 | Msa0356880:CDS | 30.0% | |
| AAACCAGAAATAGTGAAAAG+GGG | + | chr3_1:37129323-37129342 | Msa0356880:CDS | 30.0% | |
| TTGATATCAATTAGGGGAAT+CGG | - | chr3_1:37129551-37129570 | None:intergenic | 30.0% | |
| TACATATGCTGATATTCAAC+CGG | + | chr3_1:37129697-37129716 | Msa0356880:CDS | 30.0% | |
| TTATAAGGAATGATACTTCC+CGG | - | chr3_1:37129719-37129738 | None:intergenic | 30.0% | |
| TATCATTCCTTATAAGGTGA+AGG | + | chr3_1:37129724-37129743 | Msa0356880:CDS | 30.0% | |
| CTTCAAATGAAGAATAGCAA+CGG | - | chr3_1:37129885-37129904 | None:intergenic | 30.0% | |
| ! | TGCTATTCTTCATTTGAAGT+TGG | + | chr3_1:37129886-37129905 | Msa0356880:CDS | 30.0% |
| AAATTGCCTATTAGCAAAGA+AGG | + | chr3_1:37130160-37130179 | Msa0356880:CDS | 30.0% | |
| TGGATTTCTCAATACAGTGA+AGG | + | chr3_1:37129376-37129395 | Msa0356880:CDS | 35.0% | |
| GGATTTCTCAATACAGTGAA+GGG | + | chr3_1:37129377-37129396 | Msa0356880:CDS | 35.0% | |
| AAGGGTTTCATTCAAGACAT+TGG | + | chr3_1:37129395-37129414 | Msa0356880:CDS | 35.0% | |
| AGGGTTTCATTCAAGACATT+GGG | + | chr3_1:37129396-37129415 | Msa0356880:CDS | 35.0% | |
| AGAAGATTGAGGAAACAGTT+GGG | + | chr3_1:37129420-37129439 | Msa0356880:CDS | 35.0% | |
| TCTCATAAAGAATCCGAATC+CGG | + | chr3_1:37129523-37129542 | Msa0356880:CDS | 35.0% | |
| AACTATTTGGTTGAGAGCAA+TGG | + | chr3_1:37129569-37129588 | Msa0356880:CDS | 35.0% | |
| ACTATTTGGTTGAGAGCAAT+GGG | + | chr3_1:37129570-37129589 | Msa0356880:CDS | 35.0% | |
| ACATATGCTGATATTCAACC+GGG | + | chr3_1:37129698-37129717 | Msa0356880:CDS | 35.0% | |
| !! | GGGAAGTATCATTCCTTATA+AGG | + | chr3_1:37129718-37129737 | Msa0356880:CDS | 35.0% |
| AGATCAACCTTCACCTTATA+AGG | - | chr3_1:37129734-37129753 | None:intergenic | 35.0% | |
| ! | ATAGTTGATGTTCCTGTGAT+TGG | + | chr3_1:37129755-37129774 | Msa0356880:CDS | 35.0% |
| ACTATACCACTGGAAAAAAC+TGG | + | chr3_1:37129785-37129804 | Msa0356880:CDS | 35.0% | |
| !!! | ATTTCTCCAGTTTTTTCCAG+TGG | - | chr3_1:37129794-37129813 | None:intergenic | 35.0% |
| ATATCAGGCTTGTATGGAAT+CGG | - | chr3_1:37129818-37129837 | None:intergenic | 35.0% | |
| AGATCAATATCAGGCTTGTA+TGG | - | chr3_1:37129824-37129843 | None:intergenic | 35.0% | |
| AAGCCATACCTCATAATCAA+GGG | - | chr3_1:37129945-37129964 | None:intergenic | 35.0% | |
| TGGATTTCTCAATACAGTGA+AGG | + | chr3_1:37129376-37129395 | Msa0356880:CDS | 35.0% | |
| GGATTTCTCAATACAGTGAA+GGG | + | chr3_1:37129377-37129396 | Msa0356880:CDS | 35.0% | |
| AAGGGTTTCATTCAAGACAT+TGG | + | chr3_1:37129395-37129414 | Msa0356880:CDS | 35.0% | |
| AGGGTTTCATTCAAGACATT+GGG | + | chr3_1:37129396-37129415 | Msa0356880:CDS | 35.0% | |
| AGAAGATTGAGGAAACAGTT+GGG | + | chr3_1:37129420-37129439 | Msa0356880:CDS | 35.0% | |
| TCTCATAAAGAATCCGAATC+CGG | + | chr3_1:37129523-37129542 | Msa0356880:CDS | 35.0% | |
| AACTATTTGGTTGAGAGCAA+TGG | + | chr3_1:37129569-37129588 | Msa0356880:CDS | 35.0% | |
| ACTATTTGGTTGAGAGCAAT+GGG | + | chr3_1:37129570-37129589 | Msa0356880:CDS | 35.0% | |
| ACATATGCTGATATTCAACC+GGG | + | chr3_1:37129698-37129717 | Msa0356880:CDS | 35.0% | |
| !! | GGGAAGTATCATTCCTTATA+AGG | + | chr3_1:37129718-37129737 | Msa0356880:CDS | 35.0% |
| AGATCAACCTTCACCTTATA+AGG | - | chr3_1:37129734-37129753 | None:intergenic | 35.0% | |
| ! | ATAGTTGATGTTCCTGTGAT+TGG | + | chr3_1:37129755-37129774 | Msa0356880:CDS | 35.0% |
| ACTATACCACTGGAAAAAAC+TGG | + | chr3_1:37129785-37129804 | Msa0356880:CDS | 35.0% | |
| !!! | ATTTCTCCAGTTTTTTCCAG+TGG | - | chr3_1:37129794-37129813 | None:intergenic | 35.0% |
| ATATCAGGCTTGTATGGAAT+CGG | - | chr3_1:37129818-37129837 | None:intergenic | 35.0% | |
| AGATCAATATCAGGCTTGTA+TGG | - | chr3_1:37129824-37129843 | None:intergenic | 35.0% | |
| AAGCCATACCTCATAATCAA+GGG | - | chr3_1:37129945-37129964 | None:intergenic | 35.0% | |
| ! | TCACCCCTTTTCACTATTTC+TGG | - | chr3_1:37129329-37129348 | None:intergenic | 40.0% |
| GAAAAGGGGTGAAGAACAAA+AGG | + | chr3_1:37129337-37129356 | Msa0356880:CDS | 40.0% | |
| TGAAGAACAAAAGGAAGGTG+AGG | + | chr3_1:37129346-37129365 | Msa0356880:CDS | 40.0% | |
| ACAAAAGGAAGGTGAGGAAA+AGG | + | chr3_1:37129352-37129371 | Msa0356880:CDS | 40.0% | |
| CAAAAGGAAGGTGAGGAAAA+GGG | + | chr3_1:37129353-37129372 | Msa0356880:CDS | 40.0% | |
| GGGTTTCATTCAAGACATTG+GGG | + | chr3_1:37129397-37129416 | Msa0356880:CDS | 40.0% | |
| GAGAAGATTGAGGAAACAGT+TGG | + | chr3_1:37129419-37129438 | Msa0356880:CDS | 40.0% | |
| ATTGAGGAAACAGTTGGGTT+TGG | + | chr3_1:37129425-37129444 | Msa0356880:CDS | 40.0% | |
| TTGAGGAAACAGTTGGGTTT+GGG | + | chr3_1:37129426-37129445 | Msa0356880:CDS | 40.0% | |
| GAAACCAACTGCAGATGTTT+CGG | + | chr3_1:37129448-37129467 | Msa0356880:CDS | 40.0% | |
| TTGATGTTCCTGTGATTGGA+AGG | + | chr3_1:37129759-37129778 | Msa0356880:CDS | 40.0% | |
| ATAGTGATCCTTCCAATCAC+AGG | - | chr3_1:37129770-37129789 | None:intergenic | 40.0% | |
| TATCAGGCTTGTATGGAATC+GGG | - | chr3_1:37129817-37129836 | None:intergenic | 40.0% | |
| ACTCAATGCCCTTGATTATG+AGG | + | chr3_1:37129934-37129953 | Msa0356880:CDS | 40.0% | |
| ATGCCCTTGATTATGAGGTA+TGG | + | chr3_1:37129939-37129958 | Msa0356880:CDS | 40.0% | |
| CAAGCCATACCTCATAATCA+AGG | - | chr3_1:37129946-37129965 | None:intergenic | 40.0% | |
| CTTGATTATGAGGTATGGCT+TGG | + | chr3_1:37129944-37129963 | Msa0356880:CDS | 40.0% | |
| GAAGGTGATTGGAAGATCAA+TGG | - | chr3_1:37130035-37130054 | None:intergenic | 40.0% | |
| TTGATCTTCCAATCACCTTC+AGG | + | chr3_1:37130035-37130054 | Msa0356880:CDS | 40.0% | |
| ! | ATGATGAGAGGAAAAGGTAC+AGG | + | chr3_1:37130088-37130107 | Msa0356880:CDS | 40.0% |
| GGTACAGGATACACTATGAA+AGG | + | chr3_1:37130103-37130122 | Msa0356880:CDS | 40.0% | |
| ATTGATGTTGACACACCCTT+TGG | + | chr3_1:37130130-37130149 | Msa0356880:CDS | 40.0% | |
| TTGCCTATTAGCAAAGAAGG+CGG | + | chr3_1:37130163-37130182 | Msa0356880:CDS | 40.0% | |
| ! | TCACCCCTTTTCACTATTTC+TGG | - | chr3_1:37129329-37129348 | None:intergenic | 40.0% |
| GAAAAGGGGTGAAGAACAAA+AGG | + | chr3_1:37129337-37129356 | Msa0356880:CDS | 40.0% | |
| TGAAGAACAAAAGGAAGGTG+AGG | + | chr3_1:37129346-37129365 | Msa0356880:CDS | 40.0% | |
| ACAAAAGGAAGGTGAGGAAA+AGG | + | chr3_1:37129352-37129371 | Msa0356880:CDS | 40.0% | |
| CAAAAGGAAGGTGAGGAAAA+GGG | + | chr3_1:37129353-37129372 | Msa0356880:CDS | 40.0% | |
| GGGTTTCATTCAAGACATTG+GGG | + | chr3_1:37129397-37129416 | Msa0356880:CDS | 40.0% | |
| GAGAAGATTGAGGAAACAGT+TGG | + | chr3_1:37129419-37129438 | Msa0356880:CDS | 40.0% | |
| ATTGAGGAAACAGTTGGGTT+TGG | + | chr3_1:37129425-37129444 | Msa0356880:CDS | 40.0% | |
| TTGAGGAAACAGTTGGGTTT+GGG | + | chr3_1:37129426-37129445 | Msa0356880:CDS | 40.0% | |
| GAAACCAACTGCAGATGTTT+CGG | + | chr3_1:37129448-37129467 | Msa0356880:CDS | 40.0% | |
| TTGATGTTCCTGTGATTGGA+AGG | + | chr3_1:37129759-37129778 | Msa0356880:CDS | 40.0% | |
| ATAGTGATCCTTCCAATCAC+AGG | - | chr3_1:37129770-37129789 | None:intergenic | 40.0% | |
| TATCAGGCTTGTATGGAATC+GGG | - | chr3_1:37129817-37129836 | None:intergenic | 40.0% | |
| ACTCAATGCCCTTGATTATG+AGG | + | chr3_1:37129934-37129953 | Msa0356880:CDS | 40.0% | |
| ATGCCCTTGATTATGAGGTA+TGG | + | chr3_1:37129939-37129958 | Msa0356880:CDS | 40.0% | |
| CAAGCCATACCTCATAATCA+AGG | - | chr3_1:37129946-37129965 | None:intergenic | 40.0% | |
| CTTGATTATGAGGTATGGCT+TGG | + | chr3_1:37129944-37129963 | Msa0356880:CDS | 40.0% | |
| GAAGGTGATTGGAAGATCAA+TGG | - | chr3_1:37130035-37130054 | None:intergenic | 40.0% | |
| TTGATCTTCCAATCACCTTC+AGG | + | chr3_1:37130035-37130054 | Msa0356880:CDS | 40.0% | |
| ! | ATGATGAGAGGAAAAGGTAC+AGG | + | chr3_1:37130088-37130107 | Msa0356880:CDS | 40.0% |
| GGTACAGGATACACTATGAA+AGG | + | chr3_1:37130103-37130122 | Msa0356880:CDS | 40.0% | |
| ATTGATGTTGACACACCCTT+TGG | + | chr3_1:37130130-37130149 | Msa0356880:CDS | 40.0% | |
| TTGCCTATTAGCAAAGAAGG+CGG | + | chr3_1:37130163-37130182 | Msa0356880:CDS | 40.0% | |
| AGGGGTGAAGAACAAAAGGA+AGG | + | chr3_1:37129341-37129360 | Msa0356880:CDS | 45.0% | |
| AGACATTGGGGAGAAGATTG+AGG | + | chr3_1:37129409-37129428 | Msa0356880:CDS | 45.0% | |
| ATCTCCGAAACATCTGCAGT+TGG | - | chr3_1:37129455-37129474 | None:intergenic | 45.0% | |
| TCAATTAGGGGAATCGGTAC+CGG | - | chr3_1:37129545-37129564 | None:intergenic | 45.0% | |
| ATTTGGTTGAGAGCAATGGG+AGG | + | chr3_1:37129573-37129592 | Msa0356880:CDS | 45.0% | |
| ! | CAATGGGAGGAAGCTAGTTT+CGG | + | chr3_1:37129586-37129605 | Msa0356880:CDS | 45.0% |
| ! | AATGGGAGGAAGCTAGTTTC+GGG | + | chr3_1:37129587-37129606 | Msa0356880:CDS | 45.0% |
| !! | GCTAGTTTCGGGTTTGATAC+CGG | + | chr3_1:37129598-37129617 | Msa0356880:CDS | 45.0% |
| ! | GCATGGATTGTACCAGAATC+CGG | - | chr3_1:37129620-37129639 | None:intergenic | 45.0% |
| TCTGGTACAATCCATGCACA+TGG | + | chr3_1:37129623-37129642 | Msa0356880:CDS | 45.0% | |
| TACAATCCATGCACATGGAG+AGG | + | chr3_1:37129628-37129647 | Msa0356880:CDS | 45.0% | |
| TGGAAGGATCACTATACCAC+TGG | + | chr3_1:37129775-37129794 | Msa0356880:CDS | 45.0% | |
| !! | AGGTATGGCTTGGTGATGAT+AGG | + | chr3_1:37129954-37129973 | Msa0356880:CDS | 45.0% |
| !! | TGGCTTGGTGATGATAGGAT+TGG | + | chr3_1:37129959-37129978 | Msa0356880:CDS | 45.0% |
| !! | CTTGGTGATGATAGGATTGG+AGG | + | chr3_1:37129962-37129981 | Msa0356880:CDS | 45.0% |
| !! | AGTGCTGACCCAAAATCCTT+CGG | - | chr3_1:37130061-37130080 | None:intergenic | 45.0% |
| !! | AGGATTTTGGGTCAGCACTT+TGG | + | chr3_1:37130062-37130081 | Msa0356880:CDS | 45.0% |
| !! | GGATTTTGGGTCAGCACTTT+GGG | + | chr3_1:37130063-37130082 | Msa0356880:CDS | 45.0% |
| TGGGACATGATGAGAGGAAA+AGG | + | chr3_1:37130082-37130101 | Msa0356880:CDS | 45.0% | |
| GGCAATTTCATCGCTCCAAA+GGG | - | chr3_1:37130148-37130167 | None:intergenic | 45.0% | |
| AGGCAATTTCATCGCTCCAA+AGG | - | chr3_1:37130149-37130168 | None:intergenic | 45.0% | |
| GTACCGCCTTCTTTGCTAAT+AGG | - | chr3_1:37130169-37130188 | None:intergenic | 45.0% | |
| TACCCGTCTCAAGAAGAGTA+AGG | + | chr3_1:37130189-37130208 | Msa0356880:CDS | 45.0% | |
| CTCCTTACTCTTCTTGAGAC+GGG | - | chr3_1:37130194-37130213 | None:intergenic | 45.0% | |
| CCTCCTTACTCTTCTTGAGA+CGG | - | chr3_1:37130195-37130214 | None:intergenic | 45.0% | |
| CTCAAGAAGAGTAAGGAGGA+TGG | + | chr3_1:37130196-37130215 | Msa0356880:CDS | 45.0% | |
| AAGAAGAGTAAGGAGGATGG+TGG | + | chr3_1:37130199-37130218 | Msa0356880:CDS | 45.0% | |
| ! | TGGTGGAGATGATGATGATG+AGG | + | chr3_1:37130216-37130235 | Msa0356880:CDS | 45.0% |
| AGGGGTGAAGAACAAAAGGA+AGG | + | chr3_1:37129341-37129360 | Msa0356880:CDS | 45.0% | |
| AGACATTGGGGAGAAGATTG+AGG | + | chr3_1:37129409-37129428 | Msa0356880:CDS | 45.0% | |
| ATCTCCGAAACATCTGCAGT+TGG | - | chr3_1:37129455-37129474 | None:intergenic | 45.0% | |
| TCAATTAGGGGAATCGGTAC+CGG | - | chr3_1:37129545-37129564 | None:intergenic | 45.0% | |
| ATTTGGTTGAGAGCAATGGG+AGG | + | chr3_1:37129573-37129592 | Msa0356880:CDS | 45.0% | |
| ! | CAATGGGAGGAAGCTAGTTT+CGG | + | chr3_1:37129586-37129605 | Msa0356880:CDS | 45.0% |
| ! | AATGGGAGGAAGCTAGTTTC+GGG | + | chr3_1:37129587-37129606 | Msa0356880:CDS | 45.0% |
| !! | GCTAGTTTCGGGTTTGATAC+CGG | + | chr3_1:37129598-37129617 | Msa0356880:CDS | 45.0% |
| ! | GCATGGATTGTACCAGAATC+CGG | - | chr3_1:37129620-37129639 | None:intergenic | 45.0% |
| TCTGGTACAATCCATGCACA+TGG | + | chr3_1:37129623-37129642 | Msa0356880:CDS | 45.0% | |
| TACAATCCATGCACATGGAG+AGG | + | chr3_1:37129628-37129647 | Msa0356880:CDS | 45.0% | |
| TGGAAGGATCACTATACCAC+TGG | + | chr3_1:37129775-37129794 | Msa0356880:CDS | 45.0% | |
| !! | AGGTATGGCTTGGTGATGAT+AGG | + | chr3_1:37129954-37129973 | Msa0356880:CDS | 45.0% |
| !! | TGGCTTGGTGATGATAGGAT+TGG | + | chr3_1:37129959-37129978 | Msa0356880:CDS | 45.0% |
| !! | CTTGGTGATGATAGGATTGG+AGG | + | chr3_1:37129962-37129981 | Msa0356880:CDS | 45.0% |
| !! | AGTGCTGACCCAAAATCCTT+CGG | - | chr3_1:37130061-37130080 | None:intergenic | 45.0% |
| !! | AGGATTTTGGGTCAGCACTT+TGG | + | chr3_1:37130062-37130081 | Msa0356880:CDS | 45.0% |
| !! | GGATTTTGGGTCAGCACTTT+GGG | + | chr3_1:37130063-37130082 | Msa0356880:CDS | 45.0% |
| TGGGACATGATGAGAGGAAA+AGG | + | chr3_1:37130082-37130101 | Msa0356880:CDS | 45.0% | |
| GGCAATTTCATCGCTCCAAA+GGG | - | chr3_1:37130148-37130167 | None:intergenic | 45.0% | |
| AGGCAATTTCATCGCTCCAA+AGG | - | chr3_1:37130149-37130168 | None:intergenic | 45.0% | |
| GTACCGCCTTCTTTGCTAAT+AGG | - | chr3_1:37130169-37130188 | None:intergenic | 45.0% | |
| TACCCGTCTCAAGAAGAGTA+AGG | + | chr3_1:37130189-37130208 | Msa0356880:CDS | 45.0% | |
| CTCCTTACTCTTCTTGAGAC+GGG | - | chr3_1:37130194-37130213 | None:intergenic | 45.0% | |
| CCTCCTTACTCTTCTTGAGA+CGG | - | chr3_1:37130195-37130214 | None:intergenic | 45.0% | |
| CTCAAGAAGAGTAAGGAGGA+TGG | + | chr3_1:37130196-37130215 | Msa0356880:CDS | 45.0% | |
| AAGAAGAGTAAGGAGGATGG+TGG | + | chr3_1:37130199-37130218 | Msa0356880:CDS | 45.0% | |
| ! | TGGTGGAGATGATGATGATG+AGG | + | chr3_1:37130216-37130235 | Msa0356880:CDS | 45.0% |
| AAGGAAGGTGAGGAAAAGGG+TGG | + | chr3_1:37129356-37129375 | Msa0356880:CDS | 50.0% | |
| TCGGGTTTGATACCGGATTC+TGG | + | chr3_1:37129605-37129624 | Msa0356880:CDS | 50.0% | |
| CCATGCACATGGAGAGGAAA+CGG | + | chr3_1:37129634-37129653 | Msa0356880:CDS | 50.0% | |
| ! | ACCTTCAGGCCGAAGGATTT+TGG | + | chr3_1:37130049-37130068 | Msa0356880:CDS | 50.0% |
| ! | CCTTCAGGCCGAAGGATTTT+GGG | + | chr3_1:37130050-37130069 | Msa0356880:CDS | 50.0% |
| !! | GCACTTTGGGACATGATGAG+AGG | + | chr3_1:37130076-37130095 | Msa0356880:CDS | 50.0% |
| CCGTCTCAAGAAGAGTAAGG+AGG | + | chr3_1:37130192-37130211 | Msa0356880:CDS | 50.0% | |
| AAGGAAGGTGAGGAAAAGGG+TGG | + | chr3_1:37129356-37129375 | Msa0356880:CDS | 50.0% | |
| TCGGGTTTGATACCGGATTC+TGG | + | chr3_1:37129605-37129624 | Msa0356880:CDS | 50.0% | |
| CCATGCACATGGAGAGGAAA+CGG | + | chr3_1:37129634-37129653 | Msa0356880:CDS | 50.0% | |
| ! | ACCTTCAGGCCGAAGGATTT+TGG | + | chr3_1:37130049-37130068 | Msa0356880:CDS | 50.0% |
| ! | CCTTCAGGCCGAAGGATTTT+GGG | + | chr3_1:37130050-37130069 | Msa0356880:CDS | 50.0% |
| !! | GCACTTTGGGACATGATGAG+AGG | + | chr3_1:37130076-37130095 | Msa0356880:CDS | 50.0% |
| CCGTCTCAAGAAGAGTAAGG+AGG | + | chr3_1:37130192-37130211 | Msa0356880:CDS | 50.0% | |
| ! | AGGGGAATCGGTACCGGATT+CGG | - | chr3_1:37129539-37129558 | None:intergenic | 55.0% |
| CCGTTTCCTCTCCATGTGCA+TGG | - | chr3_1:37129637-37129656 | None:intergenic | 55.0% | |
| TCCAATCACCTTCAGGCCGA+AGG | + | chr3_1:37130042-37130061 | Msa0356880:CDS | 55.0% | |
| TCCTTCGGCCTGAAGGTGAT+TGG | - | chr3_1:37130046-37130065 | None:intergenic | 55.0% | |
| CCCAAAATCCTTCGGCCTGA+AGG | - | chr3_1:37130053-37130072 | None:intergenic | 55.0% | |
| ! | AGGGGAATCGGTACCGGATT+CGG | - | chr3_1:37129539-37129558 | None:intergenic | 55.0% |
| CCGTTTCCTCTCCATGTGCA+TGG | - | chr3_1:37129637-37129656 | None:intergenic | 55.0% | |
| TCCAATCACCTTCAGGCCGA+AGG | + | chr3_1:37130042-37130061 | Msa0356880:CDS | 55.0% | |
| TCCTTCGGCCTGAAGGTGAT+TGG | - | chr3_1:37130046-37130065 | None:intergenic | 55.0% | |
| CCCAAAATCCTTCGGCCTGA+AGG | - | chr3_1:37130053-37130072 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 37129308 | 37130243 | 37129308 | ID=Msa0356880;Name=Msa0356880 |
| chr3_1 | mRNA | 37129308 | 37130243 | 37129308 | ID=Msa0356880-mRNA-1;Parent=Msa0356880;Name=Msa0356880-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|311 |
| chr3_1 | exon | 37129308 | 37130243 | 37129308 | ID=Msa0356880-mRNA-1:exon:6732;Parent=Msa0356880-mRNA-1 |
| chr3_1 | CDS | 37129308 | 37130243 | 37129308 | ID=Msa0356880-mRNA-1:cds;Parent=Msa0356880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
