Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0357680 | Msa0406120 | 0.810756 | 9.839088e-51 | -8.615850e-47 |
| Msa0357680 | Msa0523940 | 0.802719 | 4.910171e-49 | -8.615850e-47 |
| Msa0357680 | Msa0669320 | 0.800439 | 1.440824e-48 | -8.615850e-47 |
| Msa0357680 | Msa0731940 | 0.804281 | 2.329188e-49 | -8.615850e-47 |
| Msa0357680 | Msa0762360 | 0.807951 | 3.933492e-50 | -8.615850e-47 |
| Msa0357680 | Msa0768290 | 0.800923 | 1.147827e-48 | -8.615850e-47 |
| Msa0357680 | Msa0833290 | 0.804429 | 2.169965e-49 | -8.615850e-47 |
| Msa0357680 | Msa0844490 | 0.806349 | 8.587609e-50 | -8.615850e-47 |
| Msa0357680 | Msa0888420 | 0.825295 | 5.067956e-54 | -8.615850e-47 |
| Msa0357680 | Msa0899450 | 0.815911 | 7.254204e-52 | -8.615850e-47 |
| Msa0357680 | Msa0952720 | 0.814589 | 1.426761e-51 | -8.615850e-47 |
| Msa0357680 | Msa0998690 | 0.802117 | 6.533190e-49 | -8.615850e-47 |
| Msa0357680 | Msa1112300 | 0.812527 | 4.053063e-51 | -8.615850e-47 |
| Msa0357680 | Msa1121480 | 0.803139 | 4.020172e-49 | -8.615850e-47 |
| Msa0357680 | Msa1121490 | 0.805641 | 1.210283e-49 | -8.615850e-47 |
| Msa0357680 | Msa1269670 | 0.804999 | 1.649252e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTACTCCTACCAGCATTCT+TGG | 0.203064 | 3_1:+41189204 | None:intergenic |
| TTGCTTCATGTCATCTGTTT+TGG | 0.221742 | 3_1:-41189231 | Msa0357680:CDS |
| GTCTTCAGCACCTTCTTCTT+TGG | 0.261686 | 3_1:+41191184 | None:intergenic |
| CAAAATTTCTGATTGGCTTT+CGG | 0.295091 | 3_1:-41191360 | None:intergenic |
| GAGCAAACCTTTCACCGTTC+TGG | 0.303491 | 3_1:+41191278 | None:intergenic |
| AAAGGACAGTTGAAAATAAG+AGG | 0.395303 | 3_1:-41191136 | Msa0357680:CDS |
| GATTGGCTTTCGGTGGGAAC+AGG | 0.442402 | 3_1:-41191350 | Msa0357680:CDS |
| AGGAAGCGCAGCAACGATTC+CGG | 0.449386 | 3_1:-41191330 | Msa0357680:CDS |
| AAGCATGAATCGATACATAA+AGG | 0.452152 | 3_1:-41191154 | Msa0357680:CDS |
| ACTGGAAAACCTTCTGCAAA+CGG | 0.491750 | 3_1:+41189256 | None:intergenic |
| AATTTCTGATTGGCTTTCGG+TGG | 0.517763 | 3_1:-41191357 | None:intergenic |
| GTTGTTGATCCGTTTGCAGA+AGG | 0.523300 | 3_1:-41189265 | Msa0357680:CDS |
| GTTGCAGCTTCCAAAGAAGA+AGG | 0.528880 | 3_1:-41191194 | Msa0357680:intron |
| ATTTATTGATTGCAGGGACA+AGG | 0.544031 | 3_1:-41188845 | Msa0357680:intron |
| AGATGACATGAAGCAATGAC+TGG | 0.561776 | 3_1:+41189238 | None:intergenic |
| CCAAGAATGCTGGTAGGAGT+AGG | 0.574609 | 3_1:-41189204 | Msa0357680:intron |
| GGAAGAATTATCTTCGCCGC+CGG | 0.577024 | 3_1:+41191311 | None:intergenic |
| ATTTCTGATTGGCTTTCGGT+GGG | 0.581141 | 3_1:-41191356 | None:intergenic |
| CTGCAAGTTTGATGATGAAG+AGG | 0.584355 | 3_1:-41191096 | Msa0357680:intron |
| AAAAGCAACATGGACACCAT+AGG | 0.595275 | 3_1:+41188986 | None:intergenic |
| AAGGACAGTTGAAAATAAGA+GGG | 0.618390 | 3_1:-41191135 | Msa0357680:CDS |
| CATGAACCTTAAAAGCAACA+TGG | 0.619303 | 3_1:+41188976 | None:intergenic |
| AAGCGCAGCAACGATTCCGG+CGG | 0.644728 | 3_1:-41191327 | Msa0357680:CDS |
| GGATAACCAAGAATGCTGGT+AGG | 0.645233 | 3_1:-41189210 | Msa0357680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAATTTTTTTCTATATAT+AGG | - | chr3_1:41190603-41190622 | Msa0357680:intron | 10.0% |
| !! | AAAACAAATAAAATTAAGAA+CGG | + | chr3_1:41191285-41191304 | None:intergenic | 10.0% |
| !!! | TTTCGTAAATTTTGATAATT+TGG | - | chr3_1:41189861-41189880 | Msa0357680:intron | 15.0% |
| !!! | TCTATCTATTTTTGATAATT+TGG | - | chr3_1:41189930-41189949 | Msa0357680:intron | 15.0% |
| !! | TAGATCAAGTTTAAATTAAT+TGG | + | chr3_1:41190227-41190246 | None:intergenic | 15.0% |
| !! | AAAAGCAATTAACATTAATA+TGG | + | chr3_1:41190330-41190349 | None:intergenic | 15.0% |
| !!! | TGTTTTATGGTTTAAATTAA+TGG | - | chr3_1:41190675-41190694 | Msa0357680:intron | 15.0% |
| !! | AACTCTATAAAATAATCTAA+AGG | + | chr3_1:41191065-41191084 | None:intergenic | 15.0% |
| !!! | TATTTTATAGAGTTATTTTC+TGG | - | chr3_1:41191071-41191090 | Msa0357680:intron | 15.0% |
| !!! | AAGAAATTTTTTGAAACAAT+TGG | + | chr3_1:41191311-41191330 | None:intergenic | 15.0% |
| !!! | TTGTTGTTATTTTGATTGTT+TGG | - | chr3_1:41188945-41188964 | Msa0357680:intron | 20.0% |
| !! | AATCTAATCATACTCAAATT+AGG | + | chr3_1:41189144-41189163 | None:intergenic | 20.0% |
| !!! | CTTTTTCAACTCAAAATTAT+TGG | - | chr3_1:41189215-41189234 | Msa0357680:CDS | 20.0% |
| !!! | TACTTTGTTTTTGTTACTTA+TGG | - | chr3_1:41189370-41189389 | Msa0357680:intron | 20.0% |
| !! | AGCATGAAAAAACATATATA+AGG | + | chr3_1:41190039-41190058 | None:intergenic | 20.0% |
| !! | ACATATGTCTACAAAAATAT+TGG | + | chr3_1:41190069-41190088 | None:intergenic | 20.0% |
| !!! | ACTCTAGAATTTAATATAGA+AGG | + | chr3_1:41190194-41190213 | None:intergenic | 20.0% |
| !!! | TTTATGAATTAAGCTTTGTT+TGG | - | chr3_1:41190884-41190903 | Msa0357680:intron | 20.0% |
| !!! | TTTTAGTTGTTTGTACATAA+TGG | - | chr3_1:41191013-41191032 | Msa0357680:intron | 20.0% |
| ! | GAAAAAGTTCAGATACATAA+AGG | + | chr3_1:41189202-41189221 | None:intergenic | 25.0% |
| ! | TGATGACTAATCTAGAAAAT+GGG | + | chr3_1:41189267-41189286 | None:intergenic | 25.0% |
| !! | TTGATGACTAATCTAGAAAA+TGG | + | chr3_1:41189268-41189287 | None:intergenic | 25.0% |
| ! | GTAGAAGATATAACTAACAA+AGG | - | chr3_1:41189458-41189477 | Msa0357680:intron | 25.0% |
| ! | AAACTAATTCCGACAAAATT+GGG | + | chr3_1:41189487-41189506 | None:intergenic | 25.0% |
| ! | AAAACTAATTCCGACAAAAT+TGG | + | chr3_1:41189488-41189507 | None:intergenic | 25.0% |
| !! | AATGAAGCATTATAACAAAC+AGG | + | chr3_1:41189542-41189561 | None:intergenic | 25.0% |
| ! | GTAGCTTAATCAAGATTATA+AGG | + | chr3_1:41189742-41189761 | None:intergenic | 25.0% |
| !! | AAACTCATCACAACATTTTT+AGG | + | chr3_1:41189764-41189783 | None:intergenic | 25.0% |
| ! | TTGATTAGAGGACAAAATAT+TGG | + | chr3_1:41189978-41189997 | None:intergenic | 25.0% |
| !!! | CTAAATTTGTTTTCATCCAT+TGG | - | chr3_1:41190119-41190138 | Msa0357680:intron | 25.0% |
| ! | AAACTTGATCTAATACATCA+TGG | - | chr3_1:41190235-41190254 | Msa0357680:intron | 25.0% |
| !! | AGTGCTAATTTACTGTTTTA+TGG | - | chr3_1:41190662-41190681 | Msa0357680:intron | 25.0% |
| ! | ATTCAAACGATATCAAAACA+GGG | + | chr3_1:41190714-41190733 | None:intergenic | 25.0% |
| ! | AATTCAAACGATATCAAAAC+AGG | + | chr3_1:41190715-41190734 | None:intergenic | 25.0% |
| ! | CAACTTATAAAATCTGATGT+TGG | - | chr3_1:41190771-41190790 | Msa0357680:intron | 25.0% |
| ! | GTTATGAAAGATGTTGAATA+GGG | - | chr3_1:41190793-41190812 | Msa0357680:intron | 25.0% |
| AAGCATGAATCGATACATAA+AGG | - | chr3_1:41189031-41189050 | Msa0357680:CDS | 30.0% | |
| AAAGGACAGTTGAAAATAAG+AGG | - | chr3_1:41189049-41189068 | Msa0357680:CDS | 30.0% | |
| AAGGACAGTTGAAAATAAGA+GGG | - | chr3_1:41189050-41189069 | Msa0357680:CDS | 30.0% | |
| !!! | TTTGGTTTTTGTTTCAGCTT+TGG | - | chr3_1:41189400-41189419 | Msa0357680:intron | 30.0% |
| GTTATATCTTCTACATCTTG+TGG | + | chr3_1:41189452-41189471 | None:intergenic | 30.0% | |
| AAGCATTATAACAAACAGGT+GGG | + | chr3_1:41189538-41189557 | None:intergenic | 30.0% | |
| GTTTCATCATTTATCTTCCA+CGG | - | chr3_1:41189626-41189645 | Msa0357680:intron | 30.0% | |
| ATAACTTTAAACCTAAACCG+TGG | + | chr3_1:41189646-41189665 | None:intergenic | 30.0% | |
| ! | TGATAATTTGGTGACTTACA+TGG | - | chr3_1:41189873-41189892 | Msa0357680:intron | 30.0% |
| ! | GATAATTTGGTGACTTACAT+GGG | - | chr3_1:41189874-41189893 | Msa0357680:intron | 30.0% |
| TACATGGGAGATTCTATAAT+AGG | - | chr3_1:41189889-41189908 | Msa0357680:intron | 30.0% | |
| GCATCAGAAAATTTGATTAG+AGG | + | chr3_1:41189990-41190009 | None:intergenic | 30.0% | |
| CAAGTACTTTAGACTTCAAA+AGG | + | chr3_1:41190432-41190451 | None:intergenic | 30.0% | |
| ! | TGAAGTCTAAAGTACTTGAT+TGG | - | chr3_1:41190434-41190453 | Msa0357680:intron | 30.0% |
| AGATTGCATATAAAAGACAC+CGG | + | chr3_1:41190638-41190657 | None:intergenic | 30.0% | |
| GATTATAATCTCAGTTTCCA+CGG | + | chr3_1:41190748-41190767 | None:intergenic | 30.0% | |
| GGTTATGAAAGATGTTGAAT+AGG | - | chr3_1:41190792-41190811 | Msa0357680:intron | 30.0% | |
| ! | TGCTGCTAATTTTACACTTT+TGG | - | chr3_1:41191120-41191139 | Msa0357680:CDS | 30.0% |
| ! | TGCTAATTTTACACTTTTGG+TGG | - | chr3_1:41191123-41191142 | Msa0357680:CDS | 30.0% |
| ! | GCTAATTTTACACTTTTGGT+GGG | - | chr3_1:41191124-41191143 | Msa0357680:CDS | 30.0% |
| ! | CTAATTTTACACTTTTGGTG+GGG | - | chr3_1:41191125-41191144 | Msa0357680:CDS | 30.0% |
| !! | TTTTGTTTGTTCAAGTCCTA+TGG | - | chr3_1:41191183-41191202 | Msa0357680:CDS | 30.0% |
| !!! | TGCTTTTAAGGTTCATGTAT+TGG | - | chr3_1:41191215-41191234 | Msa0357680:intron | 30.0% |
| ATTGTATACTGTCCAAAAAC+AGG | + | chr3_1:41191252-41191271 | None:intergenic | 30.0% | |
| TTCCAAGAGAAAAACCAGAA+CGG | - | chr3_1:41188893-41188912 | Msa0357680:intron | 35.0% | |
| TGAGCTATAATTATGAGACG+AGG | - | chr3_1:41189307-41189326 | Msa0357680:intron | 35.0% | |
| TTATGAGCAAGCACAAAAAC+AGG | + | chr3_1:41189333-41189352 | None:intergenic | 35.0% | |
| !!! | GTTACTTATGGTTGCTGTTT+TGG | - | chr3_1:41189382-41189401 | Msa0357680:intron | 35.0% |
| TGGCAAATATTCCTAAGAAC+AGG | - | chr3_1:41189420-41189439 | Msa0357680:intron | 35.0% | |
| TATCTTCTACATCTTGTGGT+TGG | + | chr3_1:41189448-41189467 | None:intergenic | 35.0% | |
| ! | CAAAGGTAACCCAATTTTGT+CGG | - | chr3_1:41189475-41189494 | Msa0357680:intron | 35.0% |
| AGCATTATAACAAACAGGTG+GGG | + | chr3_1:41189537-41189556 | None:intergenic | 35.0% | |
| ! | GAAGCATTATAACAAACAGG+TGG | + | chr3_1:41189539-41189558 | None:intergenic | 35.0% |
| TTCAACACATATTTGCCTGA+TGG | - | chr3_1:41189567-41189586 | Msa0357680:intron | 35.0% | |
| TCATTTATCTTCCACGGTTT+AGG | - | chr3_1:41189632-41189651 | Msa0357680:intron | 35.0% | |
| !! | TCATGGTGATTTGATAATGC+AGG | - | chr3_1:41190252-41190271 | Msa0357680:intron | 35.0% |
| !! | GTGATTTGATAATGCAGGTT+TGG | - | chr3_1:41190257-41190276 | Msa0357680:intron | 35.0% |
| TGTCTTTGGCCTATTCATAT+GGG | - | chr3_1:41190280-41190299 | Msa0357680:intron | 35.0% | |
| ! | CACACTTTTCCCATATGAAT+AGG | + | chr3_1:41190292-41190311 | None:intergenic | 35.0% |
| ! | TTCATATGGGAAAAGTGTGA+AGG | - | chr3_1:41190293-41190312 | Msa0357680:intron | 35.0% |
| ATATCTTGAAGCTTTCACAC+TGG | + | chr3_1:41190363-41190382 | None:intergenic | 35.0% | |
| TTGACCATCTCAATTTGCAT+GGG | + | chr3_1:41190573-41190592 | None:intergenic | 35.0% | |
| ATTGACCATCTCAATTTGCA+TGG | + | chr3_1:41190574-41190593 | None:intergenic | 35.0% | |
| TATATATAGGTGCTTCAACC+CGG | - | chr3_1:41190616-41190635 | Msa0357680:intron | 35.0% | |
| GATTGCATATAAAAGACACC+GGG | + | chr3_1:41190637-41190656 | None:intergenic | 35.0% | |
| ! | TTGCTTCATGTCATCTGTTT+TGG | - | chr3_1:41190954-41190973 | Msa0357680:intron | 35.0% |
| ! | TTTTGGATAACCAAGAATGC+TGG | - | chr3_1:41190971-41190990 | Msa0357680:intron | 35.0% |
| CATGAACCTTAAAAGCAACA+TGG | + | chr3_1:41191212-41191231 | None:intergenic | 35.0% | |
| ! | TCCTTCCATTTATTGATTGC+AGG | - | chr3_1:41191333-41191352 | Msa0357680:CDS | 35.0% |
| ! | CCTTCCATTTATTGATTGCA+GGG | - | chr3_1:41191334-41191353 | Msa0357680:CDS | 35.0% |
| TTGTCCCTGCAATCAATAAA+TGG | + | chr3_1:41191341-41191360 | None:intergenic | 35.0% | |
| ! | ATTTATTGATTGCAGGGACA+AGG | - | chr3_1:41191340-41191359 | Msa0357680:CDS | 35.0% |
| AGAAAAACCAGAACGGTGAA+AGG | - | chr3_1:41188900-41188919 | Msa0357680:intron | 40.0% | |
| !! | CTGCAAGTTTGATGATGAAG+AGG | - | chr3_1:41189089-41189108 | Msa0357680:intron | 40.0% |
| TATAACAAACAGGTGGGGAA+GGG | + | chr3_1:41189532-41189551 | None:intergenic | 40.0% | |
| TTATAACAAACAGGTGGGGA+AGG | + | chr3_1:41189533-41189552 | None:intergenic | 40.0% | |
| TTCCAAAACTCAGTTGAGTG+TGG | + | chr3_1:41189604-41189623 | None:intergenic | 40.0% | |
| TTATATCACTCACGTGTAGC+TGG | + | chr3_1:41190151-41190170 | None:intergenic | 40.0% | |
| !! | TAATGCAGGTTTGGTGTCTT+TGG | - | chr3_1:41190266-41190285 | Msa0357680:intron | 40.0% |
| GTGTCTTTGGCCTATTCATA+TGG | - | chr3_1:41190279-41190298 | Msa0357680:intron | 40.0% | |
| CATCTTGGACAATAGCTTCA+TGG | + | chr3_1:41190502-41190521 | None:intergenic | 40.0% | |
| !! | GTTTTGACAGCAACACATCT+TGG | + | chr3_1:41190517-41190536 | None:intergenic | 40.0% |
| TAGACCCATGCAAATTGAGA+TGG | - | chr3_1:41190566-41190585 | Msa0357680:intron | 40.0% | |
| CAAAACAGGGATGCATGATT+TGG | + | chr3_1:41190701-41190720 | None:intergenic | 40.0% | |
| TCTAGCAAAGGAAGGATCTT+CGG | - | chr3_1:41190838-41190857 | Msa0357680:intron | 40.0% | |
| TGACAGGACAACATGTAGTT+TGG | - | chr3_1:41190861-41190880 | Msa0357680:intron | 40.0% | |
| !! | AAGCTTTGTTTGGTTTCTGC+AGG | - | chr3_1:41190894-41190913 | Msa0357680:intron | 40.0% |
| !! | AGCTTTGTTTGGTTTCTGCA+GGG | - | chr3_1:41190895-41190914 | Msa0357680:intron | 40.0% |
| ACTGGAAAACCTTCTGCAAA+CGG | + | chr3_1:41190932-41190951 | None:intergenic | 40.0% | |
| AGATGACATGAAGCAATGAC+TGG | + | chr3_1:41190950-41190969 | None:intergenic | 40.0% | |
| ! | TTACACTTTTGGTGGGGTTT+TGG | - | chr3_1:41191131-41191150 | Msa0357680:CDS | 40.0% |
| AAAAGCAACATGGACACCAT+AGG | + | chr3_1:41191202-41191221 | None:intergenic | 40.0% | |
| !!! | TGGTGTCCATGTTGCTTTTA+AGG | - | chr3_1:41191203-41191222 | Msa0357680:intron | 40.0% |
| ! | GTGAGTTAGCAACCTGTTTT+TGG | - | chr3_1:41191237-41191256 | Msa0357680:intron | 40.0% |
| CCCTGCAATCAATAAATGGA+AGG | + | chr3_1:41191337-41191356 | None:intergenic | 40.0% | |
| !!! | CACCGTTCTGGTTTTTCTCT+TGG | + | chr3_1:41188898-41188917 | None:intergenic | 45.0% |
| GTTGCAGCTTCCAAAGAAGA+AGG | - | chr3_1:41188991-41189010 | Msa0357680:CDS | 45.0% | |
| GTCTTCAGCACCTTCTTCTT+TGG | + | chr3_1:41189004-41189023 | None:intergenic | 45.0% | |
| ! | TGTGGTTGGTTCCTGTTCTT+AGG | + | chr3_1:41189434-41189453 | None:intergenic | 45.0% |
| ! | TGCCACACTCAACTGAGTTT+TGG | - | chr3_1:41189599-41189618 | Msa0357680:intron | 45.0% |
| TTGAATTTCGTGAGAGTCCG+TGG | - | chr3_1:41190728-41190747 | Msa0357680:intron | 45.0% | |
| GAATAGGGAAGCAAACCAAG+AGG | - | chr3_1:41190808-41190827 | Msa0357680:intron | 45.0% | |
| TTGCTAGACAATCTGCCTCT+TGG | + | chr3_1:41190826-41190845 | None:intergenic | 45.0% | |
| AGAGGCAGATTGTCTAGCAA+AGG | - | chr3_1:41190826-41190845 | Msa0357680:intron | 45.0% | |
| GCAGATTGTCTAGCAAAGGA+AGG | - | chr3_1:41190830-41190849 | Msa0357680:intron | 45.0% | |
| GTTGTTGATCCGTTTGCAGA+AGG | - | chr3_1:41190920-41190939 | Msa0357680:intron | 45.0% | |
| GGATAACCAAGAATGCTGGT+AGG | - | chr3_1:41190975-41190994 | Msa0357680:intron | 45.0% | |
| GGAAGAATTATCTTCGCCGC+CGG | + | chr3_1:41188877-41188896 | None:intergenic | 50.0% | |
| GAGCAAACCTTTCACCGTTC+TGG | + | chr3_1:41188910-41188929 | None:intergenic | 50.0% | |
| GTGGCAGAGAATCAACCATC+AGG | + | chr3_1:41189585-41189604 | None:intergenic | 50.0% | |
| AAGGAAGGATCTTCGGTGAC+AGG | - | chr3_1:41190845-41190864 | Msa0357680:intron | 50.0% | |
| CCTACTCCTACCAGCATTCT+TGG | + | chr3_1:41190984-41191003 | None:intergenic | 50.0% | |
| CCAAGAATGCTGGTAGGAGT+AGG | - | chr3_1:41190981-41191000 | Msa0357680:intron | 50.0% | |
| TTCGTCCTTTAGTCACGAGC+AGG | - | chr3_1:41191039-41191058 | Msa0357680:intron | 50.0% | |
| AAAGGCCTGCTCGTGACTAA+AGG | + | chr3_1:41191047-41191066 | None:intergenic | 50.0% | |
| ! | AGGAAGCGCAGCAACGATTC+CGG | - | chr3_1:41188855-41188874 | Msa0357680:intron | 55.0% |
| !! | GTGTAGCTGGCTTGTGCCAA+TGG | + | chr3_1:41190138-41190157 | None:intergenic | 55.0% |
| AAGCGCAGCAACGATTCCGG+CGG | - | chr3_1:41188858-41188877 | Msa0357680:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 41188837 | 41191370 | 41188837 | ID=Msa0357680;Name=Msa0357680 |
| chr3_1 | mRNA | 41188837 | 41191370 | 41188837 | ID=Msa0357680-mRNA-1;Parent=Msa0357680;Name=Msa0357680-mRNA-1;_AED=0.63;_eAED=0.78;_QI=0|0|0.2|0.4|1|1|5|0|137 |
| chr3_1 | exon | 41191293 | 41191370 | 41191293 | ID=Msa0357680-mRNA-1:exon:7216;Parent=Msa0357680-mRNA-1 |
| chr3_1 | exon | 41191097 | 41191209 | 41191097 | ID=Msa0357680-mRNA-1:exon:7215;Parent=Msa0357680-mRNA-1 |
| chr3_1 | exon | 41189205 | 41189291 | 41189205 | ID=Msa0357680-mRNA-1:exon:7214;Parent=Msa0357680-mRNA-1 |
| chr3_1 | exon | 41188983 | 41189102 | 41188983 | ID=Msa0357680-mRNA-1:exon:7213;Parent=Msa0357680-mRNA-1 |
| chr3_1 | exon | 41188837 | 41188852 | 41188837 | ID=Msa0357680-mRNA-1:exon:7212;Parent=Msa0357680-mRNA-1 |
| chr3_1 | CDS | 41191293 | 41191370 | 41191293 | ID=Msa0357680-mRNA-1:cds;Parent=Msa0357680-mRNA-1 |
| chr3_1 | CDS | 41191097 | 41191209 | 41191097 | ID=Msa0357680-mRNA-1:cds;Parent=Msa0357680-mRNA-1 |
| chr3_1 | CDS | 41189205 | 41189291 | 41189205 | ID=Msa0357680-mRNA-1:cds;Parent=Msa0357680-mRNA-1 |
| chr3_1 | CDS | 41188983 | 41189102 | 41188983 | ID=Msa0357680-mRNA-1:cds;Parent=Msa0357680-mRNA-1 |
| chr3_1 | CDS | 41188837 | 41188852 | 41188837 | ID=Msa0357680-mRNA-1:cds;Parent=Msa0357680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
