AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0998690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998690 MtrunA17_Chr8g0382531 88.889 72 8 0 13 84 595 666 1.64e-39 140
Msa0998690 MtrunA17_Chr4g0048461 93.333 30 2 0 55 84 5 34 8.76e-13 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0998690 AT5G65110.1 82.857 70 12 0 15 84 601 670 4.30e-37 134
Msa0998690 AT5G65110.2 82.927 41 7 0 15 55 601 641 1.14e-18 81.6

Find 30 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATGCTCTTGATCGAATA+TGG 0.214273 6_4:-79859605 Msa0998690:CDS
ACTGCTGCTTCCTAGGGTTC+TGG 0.296928 6_4:+79860300 None:intergenic
TGTTGATGTATTTGATCTTC+CGG 0.320317 6_4:-79859312 Msa0998690:CDS
TAAGATATTCTGACAGTTTG+TGG 0.323950 6_4:+79859366 None:intergenic
GACAAATTTGAGTATGCTTT+GGG 0.326284 6_4:-79860330 None:intergenic
TGAAGATATATGAAGATATT+AGG 0.328246 6_4:+79858365 None:intergenic
ACTTACTACTGCTGCTTCCT+AGG 0.330119 6_4:+79860293 None:intergenic
AGACAAATTTGAGTATGCTT+TGG 0.351292 6_4:-79860331 None:intergenic
TTATGTACCTTGGCTTTGTC+AGG 0.363668 6_4:+79859543 None:intergenic
GTAGCTTGAGCGCTTGGATC+AGG 0.400302 6_4:+79859648 None:intergenic
TTCAGAGTAGCTTGAGCGCT+TGG 0.404357 6_4:+79859642 None:intergenic
CCTTTGCAATATTCATCACT+TGG 0.426459 6_4:+79859339 None:intergenic
TTGTTAGTTGTTACATGATC+CGG 0.430611 6_4:+79859293 None:intergenic
TTGCAAATTGATGTCTAAGC+TGG 0.453642 6_4:-79858115 Msa0998690:CDS
TGTCGATCACTTGAGTGCCT+TGG 0.466505 6_4:-79858142 Msa0998690:CDS
CTCAAGTGATCGACAAGACC+AGG 0.485596 6_4:+79858150 None:intergenic
CTTACTACTGCTGCTTCCTA+GGG 0.542866 6_4:+79860294 None:intergenic
CGACAAGACCAGGGTTGTGA+AGG 0.552215 6_4:+79858160 None:intergenic
CGATCATAGACCTTCCTGAT+GGG 0.559470 6_4:-79858083 None:intergenic
CCAAGTGATGAATATTGCAA+AGG 0.560732 6_4:-79859339 Msa0998690:CDS
GATCGAATATGGAATGACAT+TGG 0.564847 6_4:-79859594 Msa0998690:CDS
GGGAACAAAACCAGAACCCT+AGG 0.570658 6_4:-79860310 Msa0998690:CDS
TTGAAGATCCTTCACAACCC+TGG 0.590563 6_4:-79858168 Msa0998690:intron
TCGATCATAGACCTTCCTGA+TGG 0.594164 6_4:-79858084 None:intergenic
GTACTGCAATGTTGATTATG+TGG 0.610338 6_4:-79859568 Msa0998690:CDS
AAGCGCTCAAGCTACTCTGA+AGG 0.622388 6_4:-79859640 Msa0998690:CDS
TGTGGCTCCTGACAAAGCCA+AGG 0.663828 6_4:-79859550 Msa0998690:intron
CATCAATTTGCAAAAGACCA+AGG 0.673397 6_4:+79858125 None:intergenic
TACTACTATACCCATCAGGA+AGG 0.677105 6_4:+79858073 None:intergenic
TCAAGTGATCGACAAGACCA+GGG 0.710990 6_4:+79858151 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTCAATCATTATAACT+TGG + chr6_4:79858168-79858187 None:intergenic 15.0%
!! AAAAAAACTATGAACATATA+TGG + chr6_4:79859890-79859909 None:intergenic 15.0%
!!! ATATGTTCATAGTTTTTTTT+AGG - chr6_4:79859891-79859910 Msa0998690:intron 15.0%
!!! TATGTTCATAGTTTTTTTTA+GGG - chr6_4:79859892-79859911 Msa0998690:intron 15.0%
!!! ATTTTAAAAGTGAAGATTTA+TGG + chr6_4:79860142-79860161 None:intergenic 15.0%
!! TTATTTCAATCATTATAACT+TGG + chr6_4:79858168-79858187 None:intergenic 15.0%
!! AAAAAAACTATGAACATATA+TGG + chr6_4:79859890-79859909 None:intergenic 15.0%
!!! ATATGTTCATAGTTTTTTTT+AGG - chr6_4:79859891-79859910 Msa0998690:intron 15.0%
!!! TATGTTCATAGTTTTTTTTA+GGG - chr6_4:79859892-79859911 Msa0998690:intron 15.0%
!!! ATTTTAAAAGTGAAGATTTA+TGG + chr6_4:79860142-79860161 None:intergenic 15.0%
!!! GGATGTACAATTTTTATTTA+TGG - chr6_4:79858397-79858416 Msa0998690:CDS 20.0%
!!! AAGAAATTTTTTATGTACCT+TGG + chr6_4:79858873-79858892 None:intergenic 20.0%
!! AATACATATTCATCTTCTTT+GGG + chr6_4:79859209-79859228 None:intergenic 20.0%
!! AAATACATATTCATCTTCTT+TGG + chr6_4:79859210-79859229 None:intergenic 20.0%
!!! TTTAAGTTCATTGTTGAAAT+TGG - chr6_4:79859253-79859272 Msa0998690:intron 20.0%
!! TGAATATCATCATTAGATTA+TGG + chr6_4:79859567-79859586 None:intergenic 20.0%
!! GAAAAAAGAAATTTGTAAGA+TGG + chr6_4:79859844-79859863 None:intergenic 20.0%
!!! TAATGTTAATTTTGAACTAC+AGG + chr6_4:79859966-79859985 None:intergenic 20.0%
!! TGAAGATATATGAAGATATT+AGG + chr6_4:79860041-79860060 None:intergenic 20.0%
!!! GGATGTACAATTTTTATTTA+TGG - chr6_4:79858397-79858416 Msa0998690:CDS 20.0%
!!! AAGAAATTTTTTATGTACCT+TGG + chr6_4:79858873-79858892 None:intergenic 20.0%
!! AATACATATTCATCTTCTTT+GGG + chr6_4:79859209-79859228 None:intergenic 20.0%
!! AAATACATATTCATCTTCTT+TGG + chr6_4:79859210-79859229 None:intergenic 20.0%
!!! TTTAAGTTCATTGTTGAAAT+TGG - chr6_4:79859253-79859272 Msa0998690:intron 20.0%
!! TGAATATCATCATTAGATTA+TGG + chr6_4:79859567-79859586 None:intergenic 20.0%
!! GAAAAAAGAAATTTGTAAGA+TGG + chr6_4:79859844-79859863 None:intergenic 20.0%
!!! TAATGTTAATTTTGAACTAC+AGG + chr6_4:79859966-79859985 None:intergenic 20.0%
!! TGAAGATATATGAAGATATT+AGG + chr6_4:79860041-79860060 None:intergenic 20.0%
!!! TAAACCAATATTGACTTCTT+TGG + chr6_4:79858214-79858233 None:intergenic 25.0%
!! TTGGCATCTTTAACTTAAAA+TGG + chr6_4:79858273-79858292 None:intergenic 25.0%
! ATCTGATGTGCATAAAAATT+GGG + chr6_4:79858372-79858391 None:intergenic 25.0%
!!! TATTCATAAGCATTGATGAT+AGG - chr6_4:79858556-79858575 Msa0998690:intron 25.0%
!!! TATTTGAGTTTTGATACACA+GGG + chr6_4:79858626-79858645 None:intergenic 25.0%
! ATACATATTCATCTTCTTTG+GGG + chr6_4:79859208-79859227 None:intergenic 25.0%
!! ATCACTTCCATTTTCAAAAA+GGG + chr6_4:79859427-79859446 None:intergenic 25.0%
!! TATCACTTCCATTTTCAAAA+AGG + chr6_4:79859428-79859447 None:intergenic 25.0%
! TAGAAGTTCATGAAATACAA+GGG + chr6_4:79859522-79859541 None:intergenic 25.0%
! TTAGAAGTTCATGAAATACA+AGG + chr6_4:79859523-79859542 None:intergenic 25.0%
!!! CTTAATTATTTTATGCATCG+AGG + chr6_4:79859672-79859691 None:intergenic 25.0%
!!! ACTTCATTGATGTTTGTTTT+GGG + chr6_4:79859741-79859760 None:intergenic 25.0%
!! TACTTCATTGATGTTTGTTT+TGG + chr6_4:79859742-79859761 None:intergenic 25.0%
! AAAAGATGTATGAAGATATC+AGG + chr6_4:79860173-79860192 None:intergenic 25.0%
!!! TAAACCAATATTGACTTCTT+TGG + chr6_4:79858214-79858233 None:intergenic 25.0%
!! TTGGCATCTTTAACTTAAAA+TGG + chr6_4:79858273-79858292 None:intergenic 25.0%
! ATCTGATGTGCATAAAAATT+GGG + chr6_4:79858372-79858391 None:intergenic 25.0%
!!! TATTCATAAGCATTGATGAT+AGG - chr6_4:79858556-79858575 Msa0998690:intron 25.0%
!!! TATTTGAGTTTTGATACACA+GGG + chr6_4:79858626-79858645 None:intergenic 25.0%
! ATACATATTCATCTTCTTTG+GGG + chr6_4:79859208-79859227 None:intergenic 25.0%
!! ATCACTTCCATTTTCAAAAA+GGG + chr6_4:79859427-79859446 None:intergenic 25.0%
!! TATCACTTCCATTTTCAAAA+AGG + chr6_4:79859428-79859447 None:intergenic 25.0%
! TAGAAGTTCATGAAATACAA+GGG + chr6_4:79859522-79859541 None:intergenic 25.0%
! TTAGAAGTTCATGAAATACA+AGG + chr6_4:79859523-79859542 None:intergenic 25.0%
!!! CTTAATTATTTTATGCATCG+AGG + chr6_4:79859672-79859691 None:intergenic 25.0%
!!! ACTTCATTGATGTTTGTTTT+GGG + chr6_4:79859741-79859760 None:intergenic 25.0%
!! TACTTCATTGATGTTTGTTT+TGG + chr6_4:79859742-79859761 None:intergenic 25.0%
! AAAAGATGTATGAAGATATC+AGG + chr6_4:79860173-79860192 None:intergenic 25.0%
TGATCCAAAGAAGTCAATAT+TGG - chr6_4:79858207-79858226 Msa0998690:intron 30.0%
!!! CAAGTATTTTGAGGTTATGA+GGG + chr6_4:79858243-79858262 None:intergenic 30.0%
!!! ACAAGTATTTTGAGGTTATG+AGG + chr6_4:79858244-79858263 None:intergenic 30.0%
! GGTCATTTACAAGTATTTTG+AGG + chr6_4:79858252-79858271 None:intergenic 30.0%
! ATGCCAAAGTACTTTCTAAT+AGG - chr6_4:79858286-79858305 Msa0998690:intron 30.0%
! TGCCAAAGTACTTTCTAATA+GGG - chr6_4:79858287-79858306 Msa0998690:intron 30.0%
! AAAGTACTTTCTAATAGGGA+CGG - chr6_4:79858291-79858310 Msa0998690:intron 30.0%
GATCTGATGTGCATAAAAAT+TGG + chr6_4:79858373-79858392 None:intergenic 30.0%
TTTATGCACATCAGATCAAT+TGG - chr6_4:79858376-79858395 Msa0998690:CDS 30.0%
TTGTATGATTGATCGTAGAA+TGG - chr6_4:79858517-79858536 Msa0998690:intron 30.0%
!! CTATTTGAGTTTTGATACAC+AGG + chr6_4:79858627-79858646 None:intergenic 30.0%
ATTGTTATCCTCATTCACTT+TGG + chr6_4:79858677-79858696 None:intergenic 30.0%
TTTATGCTCTTGATCGAATA+TGG - chr6_4:79858798-79858817 Msa0998690:intron 30.0%
! CATAGTTGAATCTGAGATTT+AGG - chr6_4:79858938-79858957 Msa0998690:intron 30.0%
TTATAGCGTTAAAGAGAGTA+AGG + chr6_4:79858971-79858990 None:intergenic 30.0%
! ATGATGTTTTTCCATTTCAC+AGG - chr6_4:79859010-79859029 Msa0998690:intron 30.0%
TAAGATATTCTGACAGTTTG+TGG + chr6_4:79859040-79859059 None:intergenic 30.0%
TGTTGATGTATTTGATCTTC+CGG - chr6_4:79859091-79859110 Msa0998690:intron 30.0%
TTGTTAGTTGTTACATGATC+CGG + chr6_4:79859113-79859132 None:intergenic 30.0%
GATCATGTAACAACTAACAA+GGG - chr6_4:79859113-79859132 Msa0998690:intron 30.0%
TGTGGGATTCCATAAAATAA+GGG - chr6_4:79859182-79859201 Msa0998690:intron 30.0%
GAAGATGAATATGTATTTGC+AGG - chr6_4:79859212-79859231 Msa0998690:intron 30.0%
TGTTGAAATTGGAGTAATAG+TGG - chr6_4:79859264-79859283 Msa0998690:intron 30.0%
CTCATTCACAACTTTAACAA+AGG + chr6_4:79859493-79859512 None:intergenic 30.0%
TTATGGCAGCAAGAATTTAT+AGG + chr6_4:79859550-79859569 None:intergenic 30.0%
! CTGTACGTAGTTTTCATAAT+TGG + chr6_4:79859614-79859633 None:intergenic 30.0%
ATGGTCAGTTCATGTTAAAA+AGG + chr6_4:79859807-79859826 None:intergenic 30.0%
!!! TCTTTTTTCGAACAAGTACA+AGG - chr6_4:79859855-79859874 Msa0998690:intron 30.0%
! AATTTTGAACTACAGGCTTT+GGG + chr6_4:79859959-79859978 None:intergenic 30.0%
! TAATTTTGAACTACAGGCTT+TGG + chr6_4:79859960-79859979 None:intergenic 30.0%
ATTAGGCAAAAAAAGTGAAG+TGG + chr6_4:79860024-79860043 None:intergenic 30.0%
TGATCCAAAGAAGTCAATAT+TGG - chr6_4:79858207-79858226 Msa0998690:intron 30.0%
!!! CAAGTATTTTGAGGTTATGA+GGG + chr6_4:79858243-79858262 None:intergenic 30.0%
!!! ACAAGTATTTTGAGGTTATG+AGG + chr6_4:79858244-79858263 None:intergenic 30.0%
! GGTCATTTACAAGTATTTTG+AGG + chr6_4:79858252-79858271 None:intergenic 30.0%
! ATGCCAAAGTACTTTCTAAT+AGG - chr6_4:79858286-79858305 Msa0998690:intron 30.0%
! TGCCAAAGTACTTTCTAATA+GGG - chr6_4:79858287-79858306 Msa0998690:intron 30.0%
! AAAGTACTTTCTAATAGGGA+CGG - chr6_4:79858291-79858310 Msa0998690:intron 30.0%
GATCTGATGTGCATAAAAAT+TGG + chr6_4:79858373-79858392 None:intergenic 30.0%
TTTATGCACATCAGATCAAT+TGG - chr6_4:79858376-79858395 Msa0998690:CDS 30.0%
TTGTATGATTGATCGTAGAA+TGG - chr6_4:79858517-79858536 Msa0998690:intron 30.0%
!! CTATTTGAGTTTTGATACAC+AGG + chr6_4:79858627-79858646 None:intergenic 30.0%
ATTGTTATCCTCATTCACTT+TGG + chr6_4:79858677-79858696 None:intergenic 30.0%
TTTATGCTCTTGATCGAATA+TGG - chr6_4:79858798-79858817 Msa0998690:intron 30.0%
! CATAGTTGAATCTGAGATTT+AGG - chr6_4:79858938-79858957 Msa0998690:intron 30.0%
TTATAGCGTTAAAGAGAGTA+AGG + chr6_4:79858971-79858990 None:intergenic 30.0%
! ATGATGTTTTTCCATTTCAC+AGG - chr6_4:79859010-79859029 Msa0998690:intron 30.0%
TAAGATATTCTGACAGTTTG+TGG + chr6_4:79859040-79859059 None:intergenic 30.0%
TGTTGATGTATTTGATCTTC+CGG - chr6_4:79859091-79859110 Msa0998690:intron 30.0%
TTGTTAGTTGTTACATGATC+CGG + chr6_4:79859113-79859132 None:intergenic 30.0%
GATCATGTAACAACTAACAA+GGG - chr6_4:79859113-79859132 Msa0998690:intron 30.0%
TGTGGGATTCCATAAAATAA+GGG - chr6_4:79859182-79859201 Msa0998690:intron 30.0%
GAAGATGAATATGTATTTGC+AGG - chr6_4:79859212-79859231 Msa0998690:intron 30.0%
TGTTGAAATTGGAGTAATAG+TGG - chr6_4:79859264-79859283 Msa0998690:intron 30.0%
CTCATTCACAACTTTAACAA+AGG + chr6_4:79859493-79859512 None:intergenic 30.0%
TTATGGCAGCAAGAATTTAT+AGG + chr6_4:79859550-79859569 None:intergenic 30.0%
! CTGTACGTAGTTTTCATAAT+TGG + chr6_4:79859614-79859633 None:intergenic 30.0%
ATGGTCAGTTCATGTTAAAA+AGG + chr6_4:79859807-79859826 None:intergenic 30.0%
!!! TCTTTTTTCGAACAAGTACA+AGG - chr6_4:79859855-79859874 Msa0998690:intron 30.0%
! AATTTTGAACTACAGGCTTT+GGG + chr6_4:79859959-79859978 None:intergenic 30.0%
! TAATTTTGAACTACAGGCTT+TGG + chr6_4:79859960-79859979 None:intergenic 30.0%
ATTAGGCAAAAAAAGTGAAG+TGG + chr6_4:79860024-79860043 None:intergenic 30.0%
TTGACTTCTTTGGATCAACT+TGG + chr6_4:79858204-79858223 None:intergenic 35.0%
!! GTCCCTATTAGAAAGTACTT+TGG + chr6_4:79858292-79858311 None:intergenic 35.0%
TCCTCTGACAAACATAAACT+CGG + chr6_4:79858459-79858478 None:intergenic 35.0%
TACTGAATCCAAAGTGAATG+AGG - chr6_4:79858666-79858685 Msa0998690:intron 35.0%
GATCGAATATGGAATGACAT+TGG - chr6_4:79858809-79858828 Msa0998690:intron 35.0%
! GTACTGCAATGTTGATTATG+TGG - chr6_4:79858835-79858854 Msa0998690:intron 35.0%
CCTTTGCAATATTCATCACT+TGG + chr6_4:79859067-79859086 None:intergenic 35.0%
CCAAGTGATGAATATTGCAA+AGG - chr6_4:79859064-79859083 Msa0998690:intron 35.0%
GGATCATGTAACAACTAACA+AGG - chr6_4:79859112-79859131 Msa0998690:intron 35.0%
CTGTGGGATTCCATAAAATA+AGG - chr6_4:79859181-79859200 Msa0998690:intron 35.0%
ATAATCTGCGGCTATTACTA+TGG - chr6_4:79859321-79859340 Msa0998690:CDS 35.0%
ATGTGTTTCAGTCAGACATT+TGG - chr6_4:79859355-79859374 Msa0998690:CDS 35.0%
!! CTCTTGTCCCTTTTTGAAAA+TGG - chr6_4:79859417-79859436 Msa0998690:intron 35.0%
! TGATATCAGTGCTGGATTAT+TGG - chr6_4:79859443-79859462 Msa0998690:intron 35.0%
CAACGATGCTTCGAAAAATT+TGG - chr6_4:79860059-79860078 Msa0998690:intron 35.0%
TGTACATGCAAGTTTAACCA+AGG + chr6_4:79860100-79860119 None:intergenic 35.0%
CATCAATTTGCAAAAGACCA+AGG + chr6_4:79860281-79860300 None:intergenic 35.0%
TTGCAAATTGATGTCTAAGC+TGG - chr6_4:79860288-79860307 Msa0998690:intron 35.0%
TTGACTTCTTTGGATCAACT+TGG + chr6_4:79858204-79858223 None:intergenic 35.0%
!! GTCCCTATTAGAAAGTACTT+TGG + chr6_4:79858292-79858311 None:intergenic 35.0%
TCCTCTGACAAACATAAACT+CGG + chr6_4:79858459-79858478 None:intergenic 35.0%
TACTGAATCCAAAGTGAATG+AGG - chr6_4:79858666-79858685 Msa0998690:intron 35.0%
GATCGAATATGGAATGACAT+TGG - chr6_4:79858809-79858828 Msa0998690:intron 35.0%
! GTACTGCAATGTTGATTATG+TGG - chr6_4:79858835-79858854 Msa0998690:intron 35.0%
CCTTTGCAATATTCATCACT+TGG + chr6_4:79859067-79859086 None:intergenic 35.0%
CCAAGTGATGAATATTGCAA+AGG - chr6_4:79859064-79859083 Msa0998690:intron 35.0%
GGATCATGTAACAACTAACA+AGG - chr6_4:79859112-79859131 Msa0998690:intron 35.0%
CTGTGGGATTCCATAAAATA+AGG - chr6_4:79859181-79859200 Msa0998690:intron 35.0%
ATAATCTGCGGCTATTACTA+TGG - chr6_4:79859321-79859340 Msa0998690:CDS 35.0%
ATGTGTTTCAGTCAGACATT+TGG - chr6_4:79859355-79859374 Msa0998690:CDS 35.0%
!! CTCTTGTCCCTTTTTGAAAA+TGG - chr6_4:79859417-79859436 Msa0998690:intron 35.0%
! TGATATCAGTGCTGGATTAT+TGG - chr6_4:79859443-79859462 Msa0998690:intron 35.0%
CAACGATGCTTCGAAAAATT+TGG - chr6_4:79860059-79860078 Msa0998690:intron 35.0%
TGTACATGCAAGTTTAACCA+AGG + chr6_4:79860100-79860119 None:intergenic 35.0%
CATCAATTTGCAAAAGACCA+AGG + chr6_4:79860281-79860300 None:intergenic 35.0%
TTGCAAATTGATGTCTAAGC+TGG - chr6_4:79860288-79860307 Msa0998690:intron 35.0%
TCCGAGTTTATGTTTGTCAG+AGG - chr6_4:79858455-79858474 Msa0998690:intron 40.0%
TAGACGTACTACTGCTAACA+CGG - chr6_4:79858712-79858731 Msa0998690:intron 40.0%
!! TTATGTACCTTGGCTTTGTC+AGG + chr6_4:79858863-79858882 None:intergenic 40.0%
CAGATTCAACTATGTGCTTC+TGG + chr6_4:79858932-79858951 None:intergenic 40.0%
! TTTGTGGATTGCCTGTGAAA+TGG + chr6_4:79859024-79859043 None:intergenic 40.0%
TCTCAGTACACACAATCTGT+GGG - chr6_4:79859165-79859184 Msa0998690:intron 40.0%
!!! TCTTTGGGGCCCTTATTTTA+TGG + chr6_4:79859194-79859213 None:intergenic 40.0%
TGTTTCAGTCAGACATTTGG+TGG - chr6_4:79859358-79859377 Msa0998690:CDS 40.0%
AATGGAAGTGATATCAGTGC+TGG - chr6_4:79859435-79859454 Msa0998690:intron 40.0%
!!! TTTTGGGACAGCAAAACACT+TGG + chr6_4:79859725-79859744 None:intergenic 40.0%
! GATGGAGCATCTGTAAATGA+TGG + chr6_4:79859826-79859845 None:intergenic 40.0%
TCTTCAATCGCGAATAAGAG+TGG + chr6_4:79860222-79860241 None:intergenic 40.0%
TCCGAGTTTATGTTTGTCAG+AGG - chr6_4:79858455-79858474 Msa0998690:intron 40.0%
TAGACGTACTACTGCTAACA+CGG - chr6_4:79858712-79858731 Msa0998690:intron 40.0%
!! TTATGTACCTTGGCTTTGTC+AGG + chr6_4:79858863-79858882 None:intergenic 40.0%
CAGATTCAACTATGTGCTTC+TGG + chr6_4:79858932-79858951 None:intergenic 40.0%
! TTTGTGGATTGCCTGTGAAA+TGG + chr6_4:79859024-79859043 None:intergenic 40.0%
TCTCAGTACACACAATCTGT+GGG - chr6_4:79859165-79859184 Msa0998690:intron 40.0%
!!! TCTTTGGGGCCCTTATTTTA+TGG + chr6_4:79859194-79859213 None:intergenic 40.0%
TGTTTCAGTCAGACATTTGG+TGG - chr6_4:79859358-79859377 Msa0998690:CDS 40.0%
AATGGAAGTGATATCAGTGC+TGG - chr6_4:79859435-79859454 Msa0998690:intron 40.0%
!!! TTTTGGGACAGCAAAACACT+TGG + chr6_4:79859725-79859744 None:intergenic 40.0%
! GATGGAGCATCTGTAAATGA+TGG + chr6_4:79859826-79859845 None:intergenic 40.0%
TCTTCAATCGCGAATAAGAG+TGG + chr6_4:79860222-79860241 None:intergenic 40.0%
! CTTACTACTGCTGCTTCCTA+GGG + chr6_4:79858112-79858131 None:intergenic 45.0%
! ACTTACTACTGCTGCTTCCT+AGG + chr6_4:79858113-79858132 None:intergenic 45.0%
TCCAACGTACTATGTGCTGA+TGG - chr6_4:79858491-79858510 Msa0998690:intron 45.0%
! CCAACGTACTATGTGCTGAT+GGG - chr6_4:79858492-79858511 Msa0998690:intron 45.0%
AGAGTAAGCTCCTGATTGCT+TGG + chr6_4:79859148-79859167 None:intergenic 45.0%
CTCTCAGTACACACAATCTG+TGG - chr6_4:79859164-79859183 Msa0998690:intron 45.0%
CAGATTATGAGCTGTGTGTG+CGG + chr6_4:79859309-79859328 None:intergenic 45.0%
CACACACAGCTCATAATCTG+CGG - chr6_4:79859309-79859328 Msa0998690:CDS 45.0%
CGAACAAGTACAAGGAGTCA+AGG - chr6_4:79859863-79859882 Msa0998690:intron 45.0%
CTTTGGGCTGCTATATGCTT+TGG + chr6_4:79859943-79859962 None:intergenic 45.0%
TTGAAGATCCTTCACAACCC+TGG - chr6_4:79860235-79860254 Msa0998690:intron 45.0%
TCAAGTGATCGACAAGACCA+GGG + chr6_4:79860255-79860274 None:intergenic 45.0%
! CTTACTACTGCTGCTTCCTA+GGG + chr6_4:79858112-79858131 None:intergenic 45.0%
! ACTTACTACTGCTGCTTCCT+AGG + chr6_4:79858113-79858132 None:intergenic 45.0%
TCCAACGTACTATGTGCTGA+TGG - chr6_4:79858491-79858510 Msa0998690:intron 45.0%
! CCAACGTACTATGTGCTGAT+GGG - chr6_4:79858492-79858511 Msa0998690:intron 45.0%
AGAGTAAGCTCCTGATTGCT+TGG + chr6_4:79859148-79859167 None:intergenic 45.0%
CTCTCAGTACACACAATCTG+TGG - chr6_4:79859164-79859183 Msa0998690:intron 45.0%
CAGATTATGAGCTGTGTGTG+CGG + chr6_4:79859309-79859328 None:intergenic 45.0%
CACACACAGCTCATAATCTG+CGG - chr6_4:79859309-79859328 Msa0998690:CDS 45.0%
CGAACAAGTACAAGGAGTCA+AGG - chr6_4:79859863-79859882 Msa0998690:intron 45.0%
CTTTGGGCTGCTATATGCTT+TGG + chr6_4:79859943-79859962 None:intergenic 45.0%
TTGAAGATCCTTCACAACCC+TGG - chr6_4:79860235-79860254 Msa0998690:intron 45.0%
TCAAGTGATCGACAAGACCA+GGG + chr6_4:79860255-79860274 None:intergenic 45.0%
!!! TAATTTAAAATTTAAAACAA+AGG - chr6_4:79858336-79858355 Msa0998690:intron 5.0%
!! AATAAAATTATTATAAAACA+AGG - chr6_4:79858896-79858915 Msa0998690:intron 5.0%
!! ATAAAATTATTATAAAACAA+GGG - chr6_4:79858897-79858916 Msa0998690:intron 5.0%
!!! TAATTTAAAATTTAAAACAA+AGG - chr6_4:79858336-79858355 Msa0998690:intron 5.0%
!! AATAAAATTATTATAAAACA+AGG - chr6_4:79858896-79858915 Msa0998690:intron 5.0%
!! ATAAAATTATTATAAAACAA+GGG - chr6_4:79858897-79858916 Msa0998690:intron 5.0%
GGGAACAAAACCAGAACCCT+AGG - chr6_4:79858093-79858112 Msa0998690:CDS 50.0%
CCCATCAGCACATAGTACGT+TGG + chr6_4:79858495-79858514 None:intergenic 50.0%
TTCAGAGTAGCTTGAGCGCT+TGG + chr6_4:79858764-79858783 None:intergenic 50.0%
AAGCGCTCAAGCTACTCTGA+AGG - chr6_4:79858763-79858782 Msa0998690:intron 50.0%
GCACCTATTGCCAAGCAATC+AGG - chr6_4:79859135-79859154 Msa0998690:intron 50.0%
GCTCCTGATTGCTTGGCAAT+AGG + chr6_4:79859141-79859160 None:intergenic 50.0%
AGCTGTGTGTGCGGTTTCTT+TGG + chr6_4:79859300-79859319 None:intergenic 50.0%
GGTCAGTCGATCAAGAACCT+TGG - chr6_4:79860080-79860099 Msa0998690:intron 50.0%
CTCAAGTGATCGACAAGACC+AGG + chr6_4:79860256-79860275 None:intergenic 50.0%
TGTCGATCACTTGAGTGCCT+TGG - chr6_4:79860261-79860280 Msa0998690:intron 50.0%
GGGAACAAAACCAGAACCCT+AGG - chr6_4:79858093-79858112 Msa0998690:CDS 50.0%
CCCATCAGCACATAGTACGT+TGG + chr6_4:79858495-79858514 None:intergenic 50.0%
TTCAGAGTAGCTTGAGCGCT+TGG + chr6_4:79858764-79858783 None:intergenic 50.0%
AAGCGCTCAAGCTACTCTGA+AGG - chr6_4:79858763-79858782 Msa0998690:intron 50.0%
GCACCTATTGCCAAGCAATC+AGG - chr6_4:79859135-79859154 Msa0998690:intron 50.0%
GCTCCTGATTGCTTGGCAAT+AGG + chr6_4:79859141-79859160 None:intergenic 50.0%
AGCTGTGTGTGCGGTTTCTT+TGG + chr6_4:79859300-79859319 None:intergenic 50.0%
GGTCAGTCGATCAAGAACCT+TGG - chr6_4:79860080-79860099 Msa0998690:intron 50.0%
CTCAAGTGATCGACAAGACC+AGG + chr6_4:79860256-79860275 None:intergenic 50.0%
TGTCGATCACTTGAGTGCCT+TGG - chr6_4:79860261-79860280 Msa0998690:intron 50.0%
! ACTGCTGCTTCCTAGGGTTC+TGG + chr6_4:79858106-79858125 None:intergenic 55.0%
AGCGCTTGGATCAGGACAAC+TGG + chr6_4:79858750-79858769 None:intergenic 55.0%
GTAGCTTGAGCGCTTGGATC+AGG + chr6_4:79858758-79858777 None:intergenic 55.0%
TGTGGCTCCTGACAAAGCCA+AGG - chr6_4:79858853-79858872 Msa0998690:intron 55.0%
CGACAAGACCAGGGTTGTGA+AGG + chr6_4:79860246-79860265 None:intergenic 55.0%
! ACTGCTGCTTCCTAGGGTTC+TGG + chr6_4:79858106-79858125 None:intergenic 55.0%
AGCGCTTGGATCAGGACAAC+TGG + chr6_4:79858750-79858769 None:intergenic 55.0%
GTAGCTTGAGCGCTTGGATC+AGG + chr6_4:79858758-79858777 None:intergenic 55.0%
TGTGGCTCCTGACAAAGCCA+AGG - chr6_4:79858853-79858872 Msa0998690:intron 55.0%
CGACAAGACCAGGGTTGTGA+AGG + chr6_4:79860246-79860265 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 79858086 79860339 79858086 ID=Msa0998690;Name=Msa0998690
chr6_4 mRNA 79858086 79860339 79858086 ID=Msa0998690-mRNA-1;Parent=Msa0998690;Name=Msa0998690-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|0.8|0.5|0.6|5|0|144
chr6_4 exon 79860299 79860339 79860299 ID=Msa0998690-mRNA-1:exon:15155;Parent=Msa0998690-mRNA-1
chr6_4 exon 79859551 79859674 79859551 ID=Msa0998690-mRNA-1:exon:15154;Parent=Msa0998690-mRNA-1
chr6_4 exon 79859307 79859393 79859307 ID=Msa0998690-mRNA-1:exon:15153;Parent=Msa0998690-mRNA-1
chr6_4 exon 79858345 79858425 79858345 ID=Msa0998690-mRNA-1:exon:15152;Parent=Msa0998690-mRNA-1
chr6_4 exon 79858086 79858184 79858086 ID=Msa0998690-mRNA-1:exon:15151;Parent=Msa0998690-mRNA-1
chr6_4 CDS 79860299 79860339 79860299 ID=Msa0998690-mRNA-1:cds;Parent=Msa0998690-mRNA-1
chr6_4 CDS 79859551 79859674 79859551 ID=Msa0998690-mRNA-1:cds;Parent=Msa0998690-mRNA-1
chr6_4 CDS 79859307 79859393 79859307 ID=Msa0998690-mRNA-1:cds;Parent=Msa0998690-mRNA-1
chr6_4 CDS 79858345 79858425 79858345 ID=Msa0998690-mRNA-1:cds;Parent=Msa0998690-mRNA-1
chr6_4 CDS 79858086 79858184 79858086 ID=Msa0998690-mRNA-1:cds;Parent=Msa0998690-mRNA-1
Gene Sequence

>Msa0998690

ATGCTTTGGGAACAAAACCAGAACCCTAGGAAGCAGCAGTATTGTCCTGATCCAAGCGCTCAAGCTACTCTGAAGGTTGTCTGCGATCTTTATGCTCTTGATCGAATATGGAATGACATTGGAACGTACTGCAATGTTGATTATGTGGCTCCTGACAAAGCCAAGGCAATCCACAAACTGTCAGAATATCTTAGTTTCCAAGTGATGAATATTGCAAAGGAACTTGTTGATGTATTTGATCTTCCGGATCATTTCTGTAATATGCATTTCGAGCCACTTCACTTTTTTTGCCTAATATCTTCATATATCTTCAACGATGCTTCGAAAAATTTGATCCTTCACAACCCTGGTCTTGTCGATCACTTGAGTGCCTTGGTCTTTTGCAAATTGATGTCTAAGCTGGTAACATTTTCGATCATAGACCTTCCTGAT

Protein sequence

>Msa0998690

MLWEQNQNPRKQQYCPDPSAQATLKVVCDLYALDRIWNDIGTYCNVDYVAPDKAKAIHKLSEYLSFQVMNIAKELVDVFDLPDHFCNMHFEPLHFFCLISSYIFNDASKNLILHNPGLVDHLSALVFCKLMSKLVTFSIIDLPD