AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0360570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0360570 MtrunA17_Chr3g0098661 98.507 469 7 0 22 490 27 495 0.0 936
Msa0360570 MtrunA17_Chr2g0293351 29.314 481 267 6 11 483 23 438 5.94e-63 211
Msa0360570 MtrunA17_Chr3g0079271 31.236 461 259 3 22 482 112 514 1.34e-60 208
Msa0360570 MtrunA17_Chr1g0205221 31.973 441 239 8 31 471 132 511 4.16e-54 190
Msa0360570 MtrunA17_Chr1g0150001 26.915 457 258 8 34 483 75 462 6.43e-43 159
Msa0360570 MtrunA17_Chr2g0293361 36.190 210 134 0 274 483 34 243 1.02e-38 141
Msa0360570 MtrunA17_Chr2g0293371 26.877 413 229 6 79 483 1 348 1.79e-38 143
Msa0360570 MtrunA17_Chr1g0150031 32.500 160 108 0 324 483 3 162 1.06e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0360570 AT5G54860.1 66.525 469 152 2 22 490 27 490 0.0 631
Msa0360570 AT2G32040.2 30.839 441 246 7 31 471 15 396 8.87e-51 179
Msa0360570 AT2G32040.1 30.839 441 246 7 31 471 146 527 1.17e-49 179
Msa0360570 AT1G79710.2 26.419 458 261 9 33 483 73 461 3.33e-42 157
Msa0360570 AT1G79710.1 26.419 458 261 9 33 483 73 461 3.33e-42 157
Msa0360570 AT5G10820.1 25.107 466 283 7 21 482 68 471 1.40e-37 144
Msa0360570 AT1G04570.2 33.962 212 140 0 271 482 137 348 1.80e-34 134
Msa0360570 AT1G64890.1 34.906 212 138 0 274 485 221 432 1.65e-33 132
Msa0360570 AT1G64890.1 32.597 181 121 1 22 201 30 210 1.24e-19 91.7
Msa0360570 AT1G04570.1 33.962 212 140 0 271 482 285 496 2.93e-33 132
Msa0360570 AT1G04570.1 33.333 117 77 1 22 137 98 214 6.08e-14 74.7
Msa0360570 AT2G33280.2 32.243 214 145 0 274 487 107 320 4.80e-31 123
Msa0360570 AT2G33280.3 32.243 214 145 0 274 487 181 394 2.18e-30 123
Msa0360570 AT2G33280.3 38.650 163 95 2 40 201 5 163 4.09e-15 77.8
Msa0360570 AT2G33280.1 32.243 214 145 0 274 487 289 502 3.96e-30 124
Msa0360570 AT2G33280.1 37.569 181 108 2 22 201 95 271 9.65e-20 92.8
Msa0360570 AT5G25050.1 29.612 206 142 1 281 483 252 457 6.91e-26 110
Msa0360570 AT5G25050.1 32.759 174 99 4 12 182 57 215 4.23e-16 81.3
Msa0360570 AT5G25040.5 27.442 215 153 1 272 483 94 308 1.39e-25 107
Msa0360570 AT5G25040.4 27.442 215 153 1 272 483 241 455 6.34e-25 108
Msa0360570 AT5G25040.4 32.468 154 93 5 19 167 54 201 5.99e-12 68.2
Msa0360570 AT1G79710.3 22.864 398 231 9 30 420 70 398 1.43e-24 105
Msa0360570 AT5G25040.2 32.278 158 107 0 326 483 323 480 7.70e-24 105
Msa0360570 AT5G25040.2 32.468 154 93 5 19 167 54 201 5.83e-12 68.2
Msa0360570 AT5G25040.1 26.230 183 132 1 272 451 241 423 6.83e-17 83.6
Msa0360570 AT5G25040.1 32.468 154 93 5 19 167 54 201 5.12e-12 68.2
Msa0360570 AT5G25040.3 32.468 154 93 5 19 167 54 201 6.54e-12 67.4

Find 110 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAACTGAAAACACAAAT+TGG 0.197963 3_1:-49992014 None:intergenic
TTGGAGGTCTCCTGCAAATT+TGG 0.210403 3_1:-49993874 None:intergenic
TCTGACTGTATCCCGATTAA+AGG 0.215461 3_1:+49993031 Msa0360570:CDS
TGGAGCATTAAACCGTTATA+TGG 0.254901 3_1:+49992045 Msa0360570:CDS
GATGCACCTGTTGCTTCTTT+TGG 0.267349 3_1:-49996664 None:intergenic
CTCCAGAATCTTCGATTTGC+TGG 0.283430 3_1:-49994216 None:intergenic
ATGCCTTTCCTAATCTTATC+TGG 0.289468 3_1:+49996436 Msa0360570:CDS
ATCCGCTTACTTCCTTTAAT+CGG 0.294910 3_1:-49993043 None:intergenic
TTCTAAGCGTCATATGCTTT+AGG 0.310369 3_1:-49995212 None:intergenic
GTTACAGCGATGGTTGGTTT+TGG 0.323351 3_1:+49990714 None:intergenic
TTTGGCTCAGCACTTGTTGA+TGG 0.327075 3_1:+49995428 Msa0360570:CDS
TTGGTCAGGGCCAAATTTGC+AGG 0.328122 3_1:+49993864 Msa0360570:intron
GGAATATGCGGGAGTTTGTT+AGG 0.329268 3_1:+49993927 Msa0360570:CDS
ATCATAAATTGCTTTCTTCA+AGG 0.340461 3_1:-49994273 None:intergenic
TACCAGCAAATCGAAGATTC+TGG 0.353963 3_1:+49994214 Msa0360570:CDS
AACAACTTGGGAACAACAAT+AGG 0.355575 3_1:+49996514 Msa0360570:CDS
TGTAAATTGGAAAATATTAG+AGG 0.355576 3_1:+49996784 Msa0360570:three_prime_UTR
TTGATGAATACCATTGGAAT+TGG 0.356869 3_1:+49996705 Msa0360570:three_prime_UTR
TCGCCTTTGGTGTACCAGAT+AGG 0.358572 3_1:+49995393 Msa0360570:CDS
GATAGGGTTATGGTGCTCTT+TGG 0.362387 3_1:+49995410 Msa0360570:CDS
GAATAAGACTGTTGAAAGAT+TGG 0.368387 3_1:-49995085 None:intergenic
TCAATATTAAACATAGATTC+AGG 0.375201 3_1:+49996562 Msa0360570:CDS
AAAGCTCGAAGCATCGTTCT+TGG 0.380680 3_1:+49995128 Msa0360570:CDS
AAGATTATCTTTAAGCTGAT+AGG 0.385118 3_1:-49991971 None:intergenic
AATAATGTCCCTTCAATTCC+TGG 0.388732 3_1:-49996472 None:intergenic
AAGTAAGCGGATTTCGTACT+TGG 0.393076 3_1:+49993054 Msa0360570:CDS
ATTGGTTACCTCAAAATCAT+TGG 0.394424 3_1:-49994317 None:intergenic
ATCATTATCTTGGTCTTCAA+TGG 0.396384 3_1:+49993896 Msa0360570:CDS
ATCTTGGTCTTCAATGGCTG+TGG 0.396603 3_1:+49993902 Msa0360570:CDS
AAGCTCGAAGCATCGTTCTT+GGG 0.399090 3_1:+49995129 Msa0360570:CDS
TCCGCTTACTTCCTTTAATC+GGG 0.406523 3_1:-49993042 None:intergenic
GTACGCGTTGTTGGTTGGTT+AGG 0.409250 3_1:+49995156 Msa0360570:CDS
AAGAGCACCATAACCCTATC+TGG 0.416214 3_1:-49995407 None:intergenic
GAATATGCGGGAGTTTGTTA+GGG 0.418448 3_1:+49993928 Msa0360570:CDS
TTGGGGACAGTACGCGTTGT+TGG 0.424258 3_1:+49995147 Msa0360570:CDS
TGGTGTACCAGATAGGGTTA+TGG 0.430972 3_1:+49995400 Msa0360570:CDS
GCAAAGGATTTGCATACAAA+TGG 0.433365 3_1:+49994086 Msa0360570:CDS
ATCAGAAACAGAAAAGCAAT+TGG 0.433826 3_1:-49996640 None:intergenic
TTGAAGACCAAGATAATGAT+TGG 0.443377 3_1:-49993893 None:intergenic
CTATGTCCTCCAGGAATTGA+AGG 0.448099 3_1:+49996463 Msa0360570:CDS
AATAAGACTGTTGAAAGATT+GGG 0.450409 3_1:-49995084 None:intergenic
AACGATTCATACCCATATAA+CGG 0.455694 3_1:-49992057 None:intergenic
CTGTGCTCTCCCTTGTACCA+TGG 0.460291 3_1:+49993086 Msa0360570:CDS
CGCCTTTGGTGTACCAGATA+GGG 0.464246 3_1:+49995394 Msa0360570:CDS
TTTCATGTCAATAAACAACT+TGG 0.464904 3_1:+49996501 Msa0360570:CDS
ATAGTTGTCCAGATAAGATT+AGG 0.465222 3_1:-49996444 None:intergenic
GAGACCTCCAATCATTATCT+TGG 0.465996 3_1:+49993886 Msa0360570:CDS
TGCAACTGAAAACACAAATT+GGG 0.466177 3_1:-49992013 None:intergenic
ACAACTTGGGAACAACAATA+GGG 0.475196 3_1:+49996515 Msa0360570:CDS
TGGAGGACAGACCTATGTCT+TGG 0.476709 3_1:+49995037 Msa0360570:intron
TTCTTGACTGTGCAAAACTT+AGG 0.479731 3_1:+49993163 Msa0360570:CDS
AAATTGCTTTCTTCAAGGAA+TGG 0.479777 3_1:-49994268 None:intergenic
TCTGGAGAAAGGAGATTCCT+TGG 0.489789 3_1:+49994232 Msa0360570:CDS
CTAAAATAAACCATGGTACA+AGG 0.490097 3_1:-49993096 None:intergenic
GGAAAATATTAGAGGAAATG+AGG 0.496578 3_1:+49996792 Msa0360570:three_prime_UTR
GGAGCATTAAACCGTTATAT+GGG 0.497069 3_1:+49992046 Msa0360570:CDS
CTGATACCAAAAGAAGCAAC+AGG 0.498367 3_1:+49996658 Msa0360570:CDS
AGGGGTAAGAGGGAGAGAGA+AGG 0.499461 3_1:+49990767 Msa0360570:CDS
CAGGTATGCTCATGTTGCAT+TGG 0.505846 3_1:+49995325 Msa0360570:intron
TCTGGACAACTATGTCCTCC+AGG 0.517815 3_1:+49996454 Msa0360570:CDS
TCTTGGTCTTCAATGGCTGT+GGG 0.522835 3_1:+49993903 Msa0360570:CDS
TGCAGATTGCCGTTGTGTCT+AGG 0.528098 3_1:+49995363 Msa0360570:CDS
TTCATGTCAATAAACAACTT+GGG 0.529203 3_1:+49996502 Msa0360570:CDS
AAATCGAAGATTCTGGAGAA+AGG 0.536470 3_1:+49994221 Msa0360570:CDS
GGACAGTACGCGTTGTTGGT+TGG 0.546911 3_1:+49995151 Msa0360570:CDS
CATGATAATAACTGTATGCA+AGG 0.547185 3_1:-49994008 None:intergenic
TAGTTATTGATGAATACCAT+TGG 0.549832 3_1:+49996699 Msa0360570:three_prime_UTR
AGTTGAGGATTATATTGCAA+AGG 0.550493 3_1:+49994070 Msa0360570:CDS
ATGGAACCACTTTGTTGCCA+AGG 0.553047 3_1:-49994249 None:intergenic
TGTGCAGTTACAGCGATGGT+TGG 0.554231 3_1:+49990708 None:intergenic
CTTGTCATATCTTACAGCCT+CGG 0.554473 3_1:-49993224 None:intergenic
AGCTCGAAGCATCGTTCTTG+GGG 0.557659 3_1:+49995130 Msa0360570:CDS
GCGTCATATGCTTTAGGTGA+CGG 0.557890 3_1:-49995206 None:intergenic
AGTCTTATTCTACTACGAAA+CGG 0.561877 3_1:+49995098 Msa0360570:CDS
GCACAGTCAAGAATACCATC+AGG 0.566177 3_1:-49993153 None:intergenic
TGGGAACAGTAATGTGGGCG+AGG 0.573903 3_1:-49995065 None:intergenic
GTGTATAAAACCAATTCCAA+TGG 0.581676 3_1:-49996715 None:intergenic
TTGCATACAAATGGTAGTAG+TGG 0.583089 3_1:+49994095 Msa0360570:CDS
AATATGCGGGAGTTTGTTAG+GGG 0.585466 3_1:+49993929 Msa0360570:CDS
AAAGATTGGGAACAGTAATG+TGG 0.587892 3_1:-49995071 None:intergenic
AAACACAAATTGGGAAGCTG+AGG 0.590346 3_1:-49992004 None:intergenic
GGTTGGTTAGGACTTATGCT+CGG 0.594212 3_1:+49995168 Msa0360570:CDS
GAATTCAACATGGCACCTGA+TGG 0.602006 3_1:+49993138 Msa0360570:CDS
ATCAACAACAACATCTGCCA+TGG 0.606162 3_1:-49993191 None:intergenic
ATGGCTGTGGGAGGAATATG+CGG 0.607957 3_1:+49993915 Msa0360570:CDS
TGTCCAGATAAGATTAGGAA+AGG 0.608005 3_1:-49996439 None:intergenic
TAAAATAAACCATGGTACAA+GGG 0.610741 3_1:-49993095 None:intergenic
CAACCTTGAGGAATTCAACA+TGG 0.615312 3_1:+49993128 Msa0360570:CDS
TGGTCTTCAATGGCTGTGGG+AGG 0.618541 3_1:+49993906 Msa0360570:CDS
GTGCCATGTTGAATTCCTCA+AGG 0.618903 3_1:-49993131 None:intergenic
TATAACGGTTTAATGCTCCA+TGG 0.618919 3_1:-49992042 None:intergenic
AAGACCAAGATAATGATTGG+AGG 0.620304 3_1:-49993890 None:intergenic
TATGTCCTCCAGGAATTGAA+GGG 0.620734 3_1:+49996464 Msa0360570:CDS
TATCAACTATCAAAATACCT+AGG 0.622712 3_1:-49996752 None:intergenic
CTTAAACCTAAAATAAACCA+TGG 0.629672 3_1:-49993103 None:intergenic
AAGATTGGGAACAGTAATGT+GGG 0.631493 3_1:-49995070 None:intergenic
TAGGTGACGGTTATAAACGA+AGG 0.632468 3_1:-49995193 None:intergenic
GAGATTCCTTGGCAACAAAG+TGG 0.632737 3_1:+49994243 Msa0360570:CDS
AACCCTATCTGGTACACCAA+AGG 0.632946 3_1:-49995396 None:intergenic
TAGGTTTAAGTTCAACCTTG+AGG 0.633543 3_1:+49993116 Msa0360570:CDS
TGGCTGTGGGAGGAATATGC+GGG 0.640200 3_1:+49993916 Msa0360570:CDS
TAAAACTTCGCTATTTACAG+AGG 0.655075 3_1:-49994048 None:intergenic
AACACAAATTGGGAAGCTGA+GGG 0.655369 3_1:-49992003 None:intergenic
AATCTGCAGAAGATTCAAGA+AGG 0.662867 3_1:-49995348 None:intergenic
TCCCGATTAAAGGAAGTAAG+CGG 0.662912 3_1:+49993041 Msa0360570:CDS
GCAAAACTTAGGATCAGCCA+TGG 0.664884 3_1:+49993174 Msa0360570:CDS
CTTATTCTACTACGAAACGG+AGG 0.704156 3_1:+49995101 Msa0360570:CDS
TGTTGATGCGATGATAGCCG+AGG 0.715574 3_1:+49993207 Msa0360570:CDS
AATGTCCCTTCAATTCCTGG+AGG 0.720484 3_1:-49996469 None:intergenic
ATATGCGGGAGTTTGTTAGG+GGG 0.728603 3_1:+49993930 Msa0360570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAAATGATATCTTA+AGG + chr3_1:49992786-49992805 Msa0360570:intron 10.0%
!! AAACTATAATTATATATGAA+TGG - chr3_1:49994432-49994451 None:intergenic 10.0%
!! TCATATATAATTATAGTTTA+TGG + chr3_1:49994433-49994452 Msa0360570:intron 10.0%
!!! TTCATTTTCTTAATTATTAT+CGG + chr3_1:49994614-49994633 Msa0360570:intron 10.0%
!!! TTTTTGTAAGTTAAAATATT+TGG - chr3_1:49994757-49994776 None:intergenic 10.0%
!!! ATAAATGTTTCTAAATTTTA+AGG + chr3_1:49995886-49995905 Msa0360570:intron 10.0%
!!! TATAACCTAATATTTTATAT+AGG + chr3_1:49995911-49995930 Msa0360570:intron 10.0%
!!! ATAACCTAATATTTTATATA+GGG + chr3_1:49995912-49995931 Msa0360570:intron 10.0%
!!! TTTCAAAAAAGTGAAATTTT+TGG + chr3_1:49991332-49991351 Msa0360570:intron 15.0%
!!! TTCAAAAAAGTGAAATTTTT+GGG + chr3_1:49991333-49991352 Msa0360570:intron 15.0%
!!! AAAGTAGATATTTGAAATTT+TGG + chr3_1:49994344-49994363 Msa0360570:intron 15.0%
!!! GATTATTACTAACTATTTTA+CGG - chr3_1:49995003-49995022 None:intergenic 15.0%
!! AAAAAAAATACTATCTTTCA+GGG - chr3_1:49995678-49995697 None:intergenic 15.0%
!! AAAAAAAAATACTATCTTTC+AGG - chr3_1:49995679-49995698 None:intergenic 15.0%
!!! AGTATTTTTTTTTTTGCTTA+TGG + chr3_1:49995686-49995705 Msa0360570:intron 15.0%
!! TACCATCAAGATATATTTAA+AGG - chr3_1:49990857-49990876 None:intergenic 20.0%
!!! CTTGTTTTATAAAAAATCAC+TGG - chr3_1:49990943-49990962 None:intergenic 20.0%
!! AACATTAAAATCAAAATGAC+AGG + chr3_1:49991170-49991189 Msa0360570:intron 20.0%
!! ACATTAAAATCAAAATGACA+GGG + chr3_1:49991171-49991190 Msa0360570:intron 20.0%
!!! ATCTGGTAGTTTTATTTATT+GGG + chr3_1:49991531-49991550 Msa0360570:intron 20.0%
!! CTATCTTATAAGTTAGATAT+AGG + chr3_1:49992211-49992230 Msa0360570:intron 20.0%
!! TTATAAGTTAGATATAGGAT+TGG + chr3_1:49992216-49992235 Msa0360570:intron 20.0%
!! AAAATGATATCTTAAGGTTA+AGG + chr3_1:49992792-49992811 Msa0360570:intron 20.0%
!! ATTAACCAAACTAGATTATA+AGG - chr3_1:49992995-49993014 None:intergenic 20.0%
!! CAAATATCTACTTTAATGAT+TGG - chr3_1:49994338-49994357 None:intergenic 20.0%
!!! CTGTTTACTTTTTAAGATTA+TGG + chr3_1:49994367-49994386 Msa0360570:intron 20.0%
!! AACTAATAAAAAGCAATGTT+CGG + chr3_1:49994845-49994864 Msa0360570:intron 20.0%
!!! TATGTTCTTCTTTTTATTAC+AGG + chr3_1:49995306-49995325 Msa0360570:intron 20.0%
!! GTAATATATGTACTATATTG+AGG - chr3_1:49995803-49995822 None:intergenic 20.0%
!! TAGTCCCTATATAAAATATT+AGG - chr3_1:49995919-49995938 None:intergenic 20.0%
!!! ATTTTTTGTGTTATATCCTT+GGG + chr3_1:49996144-49996163 Msa0360570:intron 20.0%
!! TCAATATTAAACATAGATTC+AGG + chr3_1:49996562-49996581 Msa0360570:CDS 20.0%
!!! AATATTTTCCAATTTACAAG+TGG - chr3_1:49996782-49996801 None:intergenic 20.0%
!! TGTAAATTGGAAAATATTAG+AGG + chr3_1:49996784-49996803 Msa0360570:three_prime_UTR 20.0%
! GATGTGAATGTGAAAAAATT+GGG + chr3_1:49990744-49990763 Msa0360570:CDS 25.0%
! GACCTTTAAATATATCTTGA+TGG + chr3_1:49990852-49990871 Msa0360570:intron 25.0%
!!! TAAAAAATCACTGGTTTGAA+CGG - chr3_1:49990934-49990953 None:intergenic 25.0%
!!! TTGATTTTAATGTTCATGAG+TGG - chr3_1:49991164-49991183 None:intergenic 25.0%
!!! TGGAAGTTATTTGATTTTGA+CGG - chr3_1:49991203-49991222 None:intergenic 25.0%
!!! GATCTGGTAGTTTTATTTAT+TGG + chr3_1:49991530-49991549 Msa0360570:intron 25.0%
! AAAACTTCTAATTACTTGTC+CGG - chr3_1:49991786-49991805 None:intergenic 25.0%
! AAGATTATCTTTAAGCTGAT+AGG - chr3_1:49991974-49991993 None:intergenic 25.0%
! GTAGAGATACTTAAGATATA+TGG + chr3_1:49992310-49992329 Msa0360570:intron 25.0%
!! TTTTCTAAGCTACATAACAT+AGG - chr3_1:49992430-49992449 None:intergenic 25.0%
! TTCTGACATATTTGAGAATA+TGG - chr3_1:49992571-49992590 None:intergenic 25.0%
!!! TTTTACTGGAAGCATATTTT+CGG - chr3_1:49992601-49992620 None:intergenic 25.0%
!! AGTAAAAGGACACAATTTTA+CGG + chr3_1:49992614-49992633 Msa0360570:intron 25.0%
!! AATTAGAAAGGAAAAGTACA+AGG + chr3_1:49992659-49992678 Msa0360570:intron 25.0%
!! TGTTTTCAACACATATTAGT+TGG - chr3_1:49992895-49992914 None:intergenic 25.0%
! TAAAATAAACCATGGTACAA+GGG - chr3_1:49993098-49993117 None:intergenic 25.0%
! CTTAAACCTAAAATAAACCA+TGG - chr3_1:49993106-49993125 None:intergenic 25.0%
! TTATCTTGGACAATGAAATT+AGG - chr3_1:49993269-49993288 None:intergenic 25.0%
! TTGATCTAACAACTGAAATA+AGG - chr3_1:49993433-49993452 None:intergenic 25.0%
! AACACTTAATCATAGAGAAT+AGG - chr3_1:49993837-49993856 None:intergenic 25.0%
! TAGTACAAGAAAAAGAAAGA+AGG + chr3_1:49994160-49994179 Msa0360570:CDS 25.0%
! AGTACAAGAAAAAGAAAGAA+GGG + chr3_1:49994161-49994180 Msa0360570:CDS 25.0%
! ATCATAAATTGCTTTCTTCA+AGG - chr3_1:49994276-49994295 None:intergenic 25.0%
! TTTATGGTTAATTTACATCC+TGG + chr3_1:49994449-49994468 Msa0360570:intron 25.0%
! AATATTTGGCCATAATGTAA+AGG - chr3_1:49994743-49994762 None:intergenic 25.0%
!! ATAATCTCTGTTTTATGTTG+TGG + chr3_1:49995017-49995036 Msa0360570:intron 25.0%
! AATAAGACTGTTGAAAGATT+GGG - chr3_1:49995087-49995106 None:intergenic 25.0%
! TTAAAGGGACTAATTCAATA+TGG - chr3_1:49995748-49995767 None:intergenic 25.0%
!! ACCGAAAAAGTGTATATTAA+AGG + chr3_1:49995941-49995960 Msa0360570:intron 25.0%
!!! CCCTTTAATATACACTTTTT+CGG - chr3_1:49995945-49995964 None:intergenic 25.0%
!! CCGAAAAAGTGTATATTAAA+GGG + chr3_1:49995942-49995961 Msa0360570:intron 25.0%
! CAAGGATATAACACAAAAAA+TGG - chr3_1:49996145-49996164 None:intergenic 25.0%
!!! CATTTTTTGTGTTATATCCT+TGG + chr3_1:49996143-49996162 Msa0360570:intron 25.0%
!!! TTTTTTGTGTTATATCCTTG+GGG + chr3_1:49996145-49996164 Msa0360570:intron 25.0%
! TTTCATGTCAATAAACAACT+TGG + chr3_1:49996501-49996520 Msa0360570:CDS 25.0%
! TTCATGTCAATAAACAACTT+GGG + chr3_1:49996502-49996521 Msa0360570:CDS 25.0%
! TAGTTATTGATGAATACCAT+TGG + chr3_1:49996699-49996718 Msa0360570:three_prime_UTR 25.0%
! TATCAACTATCAAAATACCT+AGG - chr3_1:49996755-49996774 None:intergenic 25.0%
!! GATATTTTCCACTTGTAAAT+TGG + chr3_1:49996771-49996790 Msa0360570:three_prime_UTR 25.0%
GGATGTGAATGTGAAAAAAT+TGG + chr3_1:49990743-49990762 Msa0360570:CDS 30.0%
TGAATGTGAAAAAATTGGGA+GGG + chr3_1:49990748-49990767 Msa0360570:CDS 30.0%
! ATCTTGATGGTATACAAAAG+TGG + chr3_1:49990865-49990884 Msa0360570:intron 30.0%
!! ATTTTAATGTTCATGAGTGG+AGG - chr3_1:49991161-49991180 None:intergenic 30.0%
!! CATTTGGGTTTTCATTTCTT+TGG + chr3_1:49991393-49991412 Msa0360570:intron 30.0%
TCTTTGTGTGAGATTATTGA+TGG + chr3_1:49991488-49991507 Msa0360570:intron 30.0%
CTTTGTGTGAGATTATTGAT+GGG + chr3_1:49991489-49991508 Msa0360570:intron 30.0%
!!! TTTGTTTTTCCTTTGAGATC+TGG + chr3_1:49991514-49991533 Msa0360570:intron 30.0%
ATAAAACTACCAGATCTCAA+AGG - chr3_1:49991526-49991545 None:intergenic 30.0%
TTGAATGTAATCACAAGTGT+TGG + chr3_1:49991723-49991742 Msa0360570:intron 30.0%
! GGACAAGTAATTAGAAGTTT+TGG + chr3_1:49991785-49991804 Msa0360570:intron 30.0%
ATTAAGAACTCTATTGATGC+AGG + chr3_1:49991918-49991937 Msa0360570:intron 30.0%
TTAAGAACTCTATTGATGCA+GGG + chr3_1:49991919-49991938 Msa0360570:intron 30.0%
TGCAACTGAAAACACAAATT+GGG - chr3_1:49992016-49992035 None:intergenic 30.0%
ATGCAACTGAAAACACAAAT+TGG - chr3_1:49992017-49992036 None:intergenic 30.0%
!!! TTTCAGTTGCATTTTTTCCA+TGG + chr3_1:49992025-49992044 Msa0360570:CDS 30.0%
AACGATTCATACCCATATAA+CGG - chr3_1:49992060-49992079 None:intergenic 30.0%
ATACATGATACTCAATTGAG+AGG - chr3_1:49992089-49992108 None:intergenic 30.0%
CTCAATTGAGTATCATGTAT+CGG + chr3_1:49992089-49992108 Msa0360570:intron 30.0%
TATCATGTATCGGATTTAGT+TGG + chr3_1:49992099-49992118 Msa0360570:intron 30.0%
TGTAGCTTAGAAAACTAGAA+CGG + chr3_1:49992436-49992455 Msa0360570:intron 30.0%
!! TTTACTGGAAGCATATTTTC+GGG - chr3_1:49992600-49992619 None:intergenic 30.0%
GAAAATATGCTTCCAGTAAA+AGG + chr3_1:49992600-49992619 Msa0360570:intron 30.0%
! GTAAAATTGTGTCCTTTTAC+TGG - chr3_1:49992615-49992634 None:intergenic 30.0%
!! GATTTACTTTTCTCTGTCAT+TGG + chr3_1:49992749-49992768 Msa0360570:intron 30.0%
AATATGTGTTGAAAACAGCA+AGG + chr3_1:49992898-49992917 Msa0360570:intron 30.0%
TGCTTCCTTATAATCTAGTT+TGG + chr3_1:49992987-49993006 Msa0360570:intron 30.0%
TAGTTTGGTTAATGATGAAC+AGG + chr3_1:49993002-49993021 Msa0360570:intron 30.0%
CTAAAATAAACCATGGTACA+AGG - chr3_1:49993099-49993118 None:intergenic 30.0%
!! CTTGTACCATGGTTTATTTT+AGG + chr3_1:49993097-49993116 Msa0360570:CDS 30.0%
CAATATGCAACAGTTTATCT+TGG - chr3_1:49993283-49993302 None:intergenic 30.0%
AGAAATACATCCATCATAGA+AGG - chr3_1:49993468-49993487 None:intergenic 30.0%
CACATACAATGCAAAGAAAT+TGG - chr3_1:49993502-49993521 None:intergenic 30.0%
! TTTGCAGAGTTCTCTTTTTA+AGG + chr3_1:49993564-49993583 Msa0360570:intron 30.0%
TCAAATTAGTCAATCCAAAC+AGG - chr3_1:49993596-49993615 None:intergenic 30.0%
! AATGAGTTGAAAACAGCTTA+TGG - chr3_1:49993685-49993704 None:intergenic 30.0%
!!! AGCTGTTTTTGTAAGCTATT+CGG - chr3_1:49993721-49993740 None:intergenic 30.0%
TGATTAAGTGTTTGCTTTGT+TGG + chr3_1:49993845-49993864 Msa0360570:intron 30.0%
TTGAAGACCAAGATAATGAT+TGG - chr3_1:49993896-49993915 None:intergenic 30.0%
! ATCATTATCTTGGTCTTCAA+TGG + chr3_1:49993896-49993915 Msa0360570:CDS 30.0%
CATGATAATAACTGTATGCA+AGG - chr3_1:49994011-49994030 None:intergenic 30.0%
! ATTATCATGCTTTTCTGTGA+AGG + chr3_1:49994022-49994041 Msa0360570:CDS 30.0%
TAAAACTTCGCTATTTACAG+AGG - chr3_1:49994051-49994070 None:intergenic 30.0%
!!! AAATAGCGAAGTTTTAGTTG+AGG + chr3_1:49994055-49994074 Msa0360570:CDS 30.0%
AGTTGAGGATTATATTGCAA+AGG + chr3_1:49994070-49994089 Msa0360570:CDS 30.0%
AAATTGCTTTCTTCAAGGAA+TGG - chr3_1:49994271-49994290 None:intergenic 30.0%
ATTGGTTACCTCAAAATCAT+TGG - chr3_1:49994320-49994339 None:intergenic 30.0%
TATTGAAAAGACCAGATTTC+AGG - chr3_1:49994496-49994515 None:intergenic 30.0%
TCCAAACATGTTGACATTAA+AGG + chr3_1:49994671-49994690 Msa0360570:intron 30.0%
ACCTTTAATGTCAACATGTT+TGG - chr3_1:49994675-49994694 None:intergenic 30.0%
GAATAAGACTGTTGAAAGAT+TGG - chr3_1:49995088-49995107 None:intergenic 30.0%
!! AGTCTTATTCTACTACGAAA+CGG + chr3_1:49995098-49995117 Msa0360570:CDS 30.0%
AATTCTCATGTAAGCAACTA+AGG + chr3_1:49995236-49995255 Msa0360570:intron 30.0%
!! GCAACTAAGGATTGTTTTAT+TGG + chr3_1:49995249-49995268 Msa0360570:intron 30.0%
!! CTAAGGATTGTTTTATTGGT+TGG + chr3_1:49995253-49995272 Msa0360570:intron 30.0%
! GATATTTTTCCTAGACACAA+CGG - chr3_1:49995375-49995394 None:intergenic 30.0%
!!! TTCATGCTGATTTTCATGTT+GGG - chr3_1:49995545-49995564 None:intergenic 30.0%
!!! ATTCATGCTGATTTTCATGT+TGG - chr3_1:49995546-49995565 None:intergenic 30.0%
AACATGAAAATCAGCATGAA+TGG + chr3_1:49995545-49995564 Msa0360570:intron 30.0%
CTATCTTTCAGGGATTAAAA+AGG - chr3_1:49995668-49995687 None:intergenic 30.0%
TACAAGAACTAATTCAGCAT+AGG + chr3_1:49995820-49995839 Msa0360570:intron 30.0%
AATAGGTATTATTAGCTCAG+AGG + chr3_1:49996027-49996046 Msa0360570:intron 30.0%
ATAGGTATTATTAGCTCAGA+GGG + chr3_1:49996028-49996047 Msa0360570:intron 30.0%
CAACAAAAGCTATGGAAAAT+AGG - chr3_1:49996096-49996115 None:intergenic 30.0%
TTACCAGAGAAAAATCAGAA+GGG - chr3_1:49996400-49996419 None:intergenic 30.0%
TTTACCAGAGAAAAATCAGA+AGG - chr3_1:49996401-49996420 None:intergenic 30.0%
TCTCTGGTAAAAAAAAATGC+AGG + chr3_1:49996410-49996429 Msa0360570:intron 30.0%
ATAGTTGTCCAGATAAGATT+AGG - chr3_1:49996447-49996466 None:intergenic 30.0%
! TCTTTTGACAATCTTCTGTT+AGG + chr3_1:49996586-49996605 Msa0360570:CDS 30.0%
ATCAGAAACAGAAAAGCAAT+TGG - chr3_1:49996643-49996662 None:intergenic 30.0%
TTGATGAATACCATTGGAAT+TGG + chr3_1:49996705-49996724 Msa0360570:three_prime_UTR 30.0%
GTGTATAAAACCAATTCCAA+TGG - chr3_1:49996718-49996737 None:intergenic 30.0%
!! CACTTCAAATAGTTTTACCT+AGG + chr3_1:49996735-49996754 Msa0360570:three_prime_UTR 30.0%
GGAAAATATTAGAGGAAATG+AGG + chr3_1:49996792-49996811 Msa0360570:three_prime_UTR 30.0%
GTGAATGTGAAAAAATTGGG+AGG + chr3_1:49990747-49990766 Msa0360570:CDS 35.0%
GAATGTGAAAAAATTGGGAG+GGG + chr3_1:49990749-49990768 Msa0360570:CDS 35.0%
ATATTGTCGAAACCGTTAGA+GGG + chr3_1:49991222-49991241 Msa0360570:intron 35.0%
ACTAAGAACACAGAGAAAGA+GGG + chr3_1:49991309-49991328 Msa0360570:intron 35.0%
TTGGGTTAACAATGATCCAA+TGG + chr3_1:49991351-49991370 Msa0360570:intron 35.0%
AAGATGAAGAAGTGAAACCT+GGG - chr3_1:49991441-49991460 None:intergenic 35.0%
AAAGATGAAGAAGTGAAACC+TGG - chr3_1:49991442-49991461 None:intergenic 35.0%
! ATTCTACGTGTTGATCTATG+AGG + chr3_1:49991648-49991667 Msa0360570:intron 35.0%
TGCATGACACTAACATATGT+TGG + chr3_1:49991757-49991776 Msa0360570:intron 35.0%
!!! TAGAAGTTTTGGTGCTATAG+AGG + chr3_1:49991796-49991815 Msa0360570:intron 35.0%
!!! AGGGTTTTAGGTCATTTGTA+TGG + chr3_1:49991938-49991957 Msa0360570:intron 35.0%
TATAACGGTTTAATGCTCCA+TGG - chr3_1:49992045-49992064 None:intergenic 35.0%
! TGGAGCATTAAACCGTTATA+TGG + chr3_1:49992045-49992064 Msa0360570:CDS 35.0%
! GGAGCATTAAACCGTTATAT+GGG + chr3_1:49992046-49992065 Msa0360570:CDS 35.0%
TGTATCGGATTTAGTTGGTT+TGG + chr3_1:49992104-49992123 Msa0360570:intron 35.0%
! CTATGTCACTTGTTCTTTGT+AGG - chr3_1:49992496-49992515 None:intergenic 35.0%
! AAAAGGACACAATTTTACGG+TGG + chr3_1:49992617-49992636 Msa0360570:intron 35.0%
GAGCAATCGTCTAATTAGAA+AGG + chr3_1:49992647-49992666 Msa0360570:intron 35.0%
TTCTCTGTCATTGGAATATG+AGG + chr3_1:49992758-49992777 Msa0360570:intron 35.0%
ATCCGCTTACTTCCTTTAAT+CGG - chr3_1:49993046-49993065 None:intergenic 35.0%
! TAGGTTTAAGTTCAACCTTG+AGG + chr3_1:49993116-49993135 Msa0360570:CDS 35.0%
TTCTTGACTGTGCAAAACTT+AGG + chr3_1:49993163-49993182 Msa0360570:CDS 35.0%
TTGGAAGCTTATCTATATGC+AGG - chr3_1:49993315-49993334 None:intergenic 35.0%
CTTCCAATCTCTCAATACTA+CGG + chr3_1:49993328-49993347 Msa0360570:intron 35.0%
GTCACAAAATTAAAGCGATC+TGG - chr3_1:49993384-49993403 None:intergenic 35.0%
CATTTGTCAACCTTCTATGA+TGG + chr3_1:49993455-49993474 Msa0360570:intron 35.0%
!!! GCTGTTTTTGTAAGCTATTC+GGG - chr3_1:49993720-49993739 None:intergenic 35.0%
TCATAGAGAATAGGCATGTT+TGG - chr3_1:49993828-49993847 None:intergenic 35.0%
AAGACCAAGATAATGATTGG+AGG - chr3_1:49993893-49993912 None:intergenic 35.0%
GCAAAGGATTTGCATACAAA+TGG + chr3_1:49994086-49994105 Msa0360570:CDS 35.0%
TTGCATACAAATGGTAGTAG+TGG + chr3_1:49994095-49994114 Msa0360570:CDS 35.0%
! AAATCGAAGATTCTGGAGAA+AGG + chr3_1:49994221-49994240 Msa0360570:CDS 35.0%
! TTAGACAGCCAATGATTTTG+AGG + chr3_1:49994309-49994328 Msa0360570:CDS 35.0%
TCCTATTTGTTCCTGAAATC+TGG + chr3_1:49994482-49994501 Msa0360570:intron 35.0%
ACCAGATTTCAGGAACAAAT+AGG - chr3_1:49994486-49994505 None:intergenic 35.0%
CTACATCCTCCTTTACATTA+TGG + chr3_1:49994731-49994750 Msa0360570:intron 35.0%
ATTTGGCCATAATGTAAAGG+AGG - chr3_1:49994740-49994759 None:intergenic 35.0%
! TGAATTAGCTTCATTCTGTG+AGG - chr3_1:49994968-49994987 None:intergenic 35.0%
! ATCTCTGTTTTATGTTGTGG+AGG + chr3_1:49995020-49995039 Msa0360570:intron 35.0%
AAGATTGGGAACAGTAATGT+GGG - chr3_1:49995073-49995092 None:intergenic 35.0%
AAAGATTGGGAACAGTAATG+TGG - chr3_1:49995074-49995093 None:intergenic 35.0%
TTCTAAGCGTCATATGCTTT+AGG - chr3_1:49995215-49995234 None:intergenic 35.0%
AATCTGCAGAAGATTCAAGA+AGG - chr3_1:49995351-49995370 None:intergenic 35.0%
TCTAGGAAAAATATCGCCTT+TGG + chr3_1:49995380-49995399 Msa0360570:CDS 35.0%
! TTTTTGCTTAAGCATGTGCA+TGG + chr3_1:49995499-49995518 Msa0360570:intron 35.0%
GGACAAAATTTAAGCTAGTG+AGG - chr3_1:49995647-49995666 None:intergenic 35.0%
AGCATAGGCCAAATATTACA+CGG + chr3_1:49995835-49995854 Msa0360570:intron 35.0%
GGTTTAGTCCGTGTAATATT+TGG - chr3_1:49995846-49995865 None:intergenic 35.0%
!!! TAGTTTGTTCCTCGTTGTTT+TGG - chr3_1:49995867-49995886 None:intergenic 35.0%
ATTTACTTTATCACTGCACC+TGG + chr3_1:49995980-49995999 Msa0360570:intron 35.0%
TTTACCAAGCACATCTCAAT+AGG + chr3_1:49996010-49996029 Msa0360570:intron 35.0%
AATACCTATTGAGATGTGCT+TGG - chr3_1:49996017-49996036 None:intergenic 35.0%
GTTTCAAGCAACAAAAGCTA+TGG - chr3_1:49996104-49996123 None:intergenic 35.0%
TTATATCCTTGGGGTCTAAT+TGG + chr3_1:49996154-49996173 Msa0360570:intron 35.0%
TCATAAGTTCTTCACTCTTC+AGG + chr3_1:49996283-49996302 Msa0360570:intron 35.0%
CATAAGTTCTTCACTCTTCA+GGG + chr3_1:49996284-49996303 Msa0360570:intron 35.0%
ATGCCTTTCCTAATCTTATC+TGG + chr3_1:49996436-49996455 Msa0360570:CDS 35.0%
TGTCCAGATAAGATTAGGAA+AGG - chr3_1:49996442-49996461 None:intergenic 35.0%
AATAATGTCCCTTCAATTCC+TGG - chr3_1:49996475-49996494 None:intergenic 35.0%
AACAACTTGGGAACAACAAT+AGG + chr3_1:49996514-49996533 Msa0360570:CDS 35.0%
ACAACTTGGGAACAACAATA+GGG + chr3_1:49996515-49996534 Msa0360570:CDS 35.0%
! ACAACAATAGGGTCTTTTGT+AGG + chr3_1:49996526-49996545 Msa0360570:CDS 35.0%
AAAAAATTGGGAGGGGTAAG+AGG + chr3_1:49990756-49990775 Msa0360570:CDS 40.0%
AAAAATTGGGAGGGGTAAGA+GGG + chr3_1:49990757-49990776 Msa0360570:CDS 40.0%
CTCTAACGGTTTCGACAATA+TGG - chr3_1:49991223-49991242 None:intergenic 40.0%
CATATTGTCGAAACCGTTAG+AGG + chr3_1:49991221-49991240 Msa0360570:intron 40.0%
AGTTTCAGCTTTCCCTCTAA+CGG - chr3_1:49991237-49991256 None:intergenic 40.0%
CACTAAGAACACAGAGAAAG+AGG + chr3_1:49991308-49991327 Msa0360570:intron 40.0%
CAATGATCCAATGGACGAAT+CGG + chr3_1:49991360-49991379 Msa0360570:intron 40.0%
AATCGGTTGAATGCTGCATT+TGG + chr3_1:49991377-49991396 Msa0360570:intron 40.0%
ATCGGTTGAATGCTGCATTT+GGG + chr3_1:49991378-49991397 Msa0360570:intron 40.0%
TTGCTTGATTTACTTCACCC+AGG + chr3_1:49991421-49991440 Msa0360570:intron 40.0%
!! CACAAGTGTTGGTGTTGTTT+CGG + chr3_1:49991734-49991753 Msa0360570:intron 40.0%
CACTAACATATGTTGGACAC+CGG + chr3_1:49991764-49991783 Msa0360570:intron 40.0%
! CTCTATTGATGCAGGGTTTT+AGG + chr3_1:49991926-49991945 Msa0360570:intron 40.0%
AACACAAATTGGGAAGCTGA+GGG - chr3_1:49992006-49992025 None:intergenic 40.0%
AAACACAAATTGGGAAGCTG+AGG - chr3_1:49992007-49992026 None:intergenic 40.0%
AGGTGCAAAGAAAGCAACAT+AGG - chr3_1:49992476-49992495 None:intergenic 40.0%
TCTGACTGTATCCCGATTAA+AGG + chr3_1:49993031-49993050 Msa0360570:CDS 40.0%
TCCCGATTAAAGGAAGTAAG+CGG + chr3_1:49993041-49993060 Msa0360570:CDS 40.0%
TCCGCTTACTTCCTTTAATC+GGG - chr3_1:49993045-49993064 None:intergenic 40.0%
! AAGTAAGCGGATTTCGTACT+TGG + chr3_1:49993054-49993073 Msa0360570:CDS 40.0%
CAACCTTGAGGAATTCAACA+TGG + chr3_1:49993128-49993147 Msa0360570:CDS 40.0%
ATCAACAACAACATCTGCCA+TGG - chr3_1:49993194-49993213 None:intergenic 40.0%
CTTGTCATATCTTACAGCCT+CGG - chr3_1:49993227-49993246 None:intergenic 40.0%
!!! TTTTAAGGCCTGTTCCTGTT+TGG + chr3_1:49993579-49993598 Msa0360570:intron 40.0%
TAGTCAATCCAAACAGGAAC+AGG - chr3_1:49993590-49993609 None:intergenic 40.0%
! AAGTGTTTGCTTTGTTGGTC+AGG + chr3_1:49993850-49993869 Msa0360570:intron 40.0%
! AGTGTTTGCTTTGTTGGTCA+GGG + chr3_1:49993851-49993870 Msa0360570:intron 40.0%
GAGACCTCCAATCATTATCT+TGG + chr3_1:49993886-49993905 Msa0360570:CDS 40.0%
!! GAATATGCGGGAGTTTGTTA+GGG + chr3_1:49993928-49993947 Msa0360570:CDS 40.0%
!! AATATGCGGGAGTTTGTTAG+GGG + chr3_1:49993929-49993948 Msa0360570:CDS 40.0%
TACCAGCAAATCGAAGATTC+TGG + chr3_1:49994214-49994233 Msa0360570:CDS 40.0%
AAATAGGAAGCTTCAGAACC+AGG - chr3_1:49994470-49994489 None:intergenic 40.0%
! ATCGGTGTCTGTGTTTGTAT+CGG + chr3_1:49994632-49994651 Msa0360570:intron 40.0%
CTTATTCTACTACGAAACGG+AGG + chr3_1:49995101-49995120 Msa0360570:CDS 40.0%
! TAGGTGACGGTTATAAACGA+AGG - chr3_1:49995196-49995215 None:intergenic 40.0%
AGCTAGTGAGGAATGAAAAC+TGG - chr3_1:49995635-49995654 None:intergenic 40.0%
TGCTTGGTAAAGATGAATCC+AGG - chr3_1:49996001-49996020 None:intergenic 40.0%
ATCAATCCAATTAGACCCCA+AGG - chr3_1:49996163-49996182 None:intergenic 40.0%
! AAGCCCTTCTGATTTTTCTC+TGG + chr3_1:49996394-49996413 Msa0360570:intron 40.0%
TATGTCCTCCAGGAATTGAA+GGG + chr3_1:49996464-49996483 Msa0360570:CDS 40.0%
CTGATACCAAAAGAAGCAAC+AGG + chr3_1:49996658-49996677 Msa0360570:CDS 40.0%
TAAGAGGGAGAGAGAAGGTA+GGG + chr3_1:49990772-49990791 Msa0360570:intron 45.0%
!! GTAGGGAAATGGATTGTGTG+AGG + chr3_1:49990789-49990808 Msa0360570:intron 45.0%
CCATCAACTAAGTGGTTCAC+CGG - chr3_1:49990895-49990914 None:intergenic 45.0%
AGGGTGAACCATCAACTAAG+TGG - chr3_1:49990903-49990922 None:intergenic 45.0%
GGTTTGAACGGTGATGTCTA+GGG - chr3_1:49990922-49990941 None:intergenic 45.0%
TGGTTTGAACGGTGATGTCT+AGG - chr3_1:49990923-49990942 None:intergenic 45.0%
TAATCTCACGTGGCAAGTTC+TGG + chr3_1:49991088-49991107 Msa0360570:intron 45.0%
!! GCAAGTTCTGGTTCGATTCA+TGG + chr3_1:49991100-49991119 Msa0360570:intron 45.0%
!! CATTCAACCGATTCGTCCAT+TGG - chr3_1:49991370-49991389 None:intergenic 45.0%
GTCAGTATCGTCTCTAGTGT+CGG - chr3_1:49991676-49991695 None:intergenic 45.0%
!! GTTGGTTTGGTATGTAGCGT+CGG + chr3_1:49992117-49992136 Msa0360570:intron 45.0%
!! TATGTAGCGTCGGTGTAGAA+AGG + chr3_1:49992127-49992146 Msa0360570:intron 45.0%
! AGGACACAATTTTACGGTGG+TGG + chr3_1:49992620-49992639 Msa0360570:intron 45.0%
! GGACACAATTTTACGGTGGT+GGG + chr3_1:49992621-49992640 Msa0360570:intron 45.0%
! GACACAATTTTACGGTGGTG+GGG + chr3_1:49992622-49992641 Msa0360570:intron 45.0%
GTGCCATGTTGAATTCCTCA+AGG - chr3_1:49993134-49993153 None:intergenic 45.0%
GAATTCAACATGGCACCTGA+TGG + chr3_1:49993138-49993157 Msa0360570:CDS 45.0%
GCACAGTCAAGAATACCATC+AGG - chr3_1:49993156-49993175 None:intergenic 45.0%
GCAAAACTTAGGATCAGCCA+TGG + chr3_1:49993174-49993193 Msa0360570:CDS 45.0%
! GGTCCGTAGTATTGAGAGAT+TGG - chr3_1:49993334-49993353 None:intergenic 45.0%
TCAATACTACGGACCAGTGA+AGG + chr3_1:49993339-49993358 Msa0360570:intron 45.0%
TGAACCATGCATGCACTTCA+TGG + chr3_1:49993537-49993556 Msa0360570:intron 45.0%
GATTCCATGAAGTGCATGCA+TGG - chr3_1:49993544-49993563 None:intergenic 45.0%
AAGCTATTCGGGAGAGCTTA+TGG - chr3_1:49993709-49993728 None:intergenic 45.0%
TTGGAGGTCTCCTGCAAATT+TGG - chr3_1:49993877-49993896 None:intergenic 45.0%
! ATCTTGGTCTTCAATGGCTG+TGG + chr3_1:49993902-49993921 Msa0360570:CDS 45.0%
! TCTTGGTCTTCAATGGCTGT+GGG + chr3_1:49993903-49993922 Msa0360570:CDS 45.0%
! GGAATATGCGGGAGTTTGTT+AGG + chr3_1:49993927-49993946 Msa0360570:CDS 45.0%
!! ATATGCGGGAGTTTGTTAGG+GGG + chr3_1:49993930-49993949 Msa0360570:CDS 45.0%
! CTCCAGAATCTTCGATTTGC+TGG - chr3_1:49994219-49994238 None:intergenic 45.0%
TCTGGAGAAAGGAGATTCCT+TGG + chr3_1:49994232-49994251 Msa0360570:CDS 45.0%
GAGATTCCTTGGCAACAAAG+TGG + chr3_1:49994243-49994262 Msa0360570:CDS 45.0%
ATGGAACCACTTTGTTGCCA+AGG - chr3_1:49994252-49994271 None:intergenic 45.0%
CAATATGAAATGCATCCCCC+TGG + chr3_1:49994511-49994530 Msa0360570:intron 45.0%
TGAAGCGACAGTGCTACATT+CGG - chr3_1:49994539-49994558 None:intergenic 45.0%
ATGTCCAACAGTGACACATG+CGG + chr3_1:49994576-49994595 Msa0360570:intron 45.0%
GCGAGGAAAAACCAAGACAT+AGG - chr3_1:49995051-49995070 None:intergenic 45.0%
!! AAAGCTCGAAGCATCGTTCT+TGG + chr3_1:49995128-49995147 Msa0360570:CDS 45.0%
!! AAGCTCGAAGCATCGTTCTT+GGG + chr3_1:49995129-49995148 Msa0360570:CDS 45.0%
! GGTTGGTTAGGACTTATGCT+CGG + chr3_1:49995168-49995187 Msa0360570:CDS 45.0%
! GCGTCATATGCTTTAGGTGA+CGG - chr3_1:49995209-49995228 None:intergenic 45.0%
CAGGTATGCTCATGTTGCAT+TGG + chr3_1:49995325-49995344 Msa0360570:intron 45.0%
AACCCTATCTGGTACACCAA+AGG - chr3_1:49995399-49995418 None:intergenic 45.0%
TGGTGTACCAGATAGGGTTA+TGG + chr3_1:49995400-49995419 Msa0360570:CDS 45.0%
!! AAGAGCACCATAACCCTATC+TGG - chr3_1:49995410-49995429 None:intergenic 45.0%
GATAGGGTTATGGTGCTCTT+TGG + chr3_1:49995410-49995429 Msa0360570:CDS 45.0%
! TTTGGCTCAGCACTTGTTGA+TGG + chr3_1:49995428-49995447 Msa0360570:CDS 45.0%
AAGCATGTGCATGGTACGAT+AGG + chr3_1:49995508-49995527 Msa0360570:intron 45.0%
CGGACTAAACCAAAACAACG+AGG + chr3_1:49995855-49995874 Msa0360570:intron 45.0%
CTATGTCCTCCAGGAATTGA+AGG + chr3_1:49996463-49996482 Msa0360570:CDS 45.0%
AATGTCCCTTCAATTCCTGG+AGG - chr3_1:49996472-49996491 None:intergenic 45.0%
! ATAGGGTCTTTTGTAGGTGC+TGG + chr3_1:49996532-49996551 Msa0360570:CDS 45.0%
!! GATGCACCTGTTGCTTCTTT+TGG - chr3_1:49996667-49996686 None:intergenic 45.0%
!!! ATAATTTTATTTTGAATTTA+TGG + chr3_1:49992392-49992411 Msa0360570:intron 5.0%
!!! TTATTTATTTTTTGTATTTA+TGG + chr3_1:49994942-49994961 Msa0360570:intron 5.0%
!!! TATATCAATTTTATTTTAAA+GGG - chr3_1:49995763-49995782 None:intergenic 5.0%
!!! ATATATCAATTTTATTTTAA+AGG - chr3_1:49995764-49995783 None:intergenic 5.0%
!!! AAATTGATATATATATTTTA+TGG + chr3_1:49995772-49995791 Msa0360570:intron 5.0%
GTAAGAGGGAGAGAGAAGGT+AGG + chr3_1:49990771-49990790 Msa0360570:intron 50.0%
GGAGAGAGAAGGTAGGGAAA+TGG + chr3_1:49990778-49990797 Msa0360570:intron 50.0%
GGTATACAAAAGTGGTCCGC+CGG + chr3_1:49990873-49990892 Msa0360570:intron 50.0%
TCAACTAAGTGGTTCACCGG+CGG - chr3_1:49990892-49990911 None:intergenic 50.0%
CCGGTGAACCACTTAGTTGA+TGG + chr3_1:49990892-49990911 Msa0360570:intron 50.0%
GTCACCACAGTAATCTCACG+TGG + chr3_1:49991078-49991097 Msa0360570:intron 50.0%
CTTGCCACGTGAGATTACTG+TGG - chr3_1:49991085-49991104 None:intergenic 50.0%
TGTTGATGCGATGATAGCCG+AGG + chr3_1:49993207-49993226 Msa0360570:CDS 50.0%
ACATTCCCTTCGACCTTCAC+TGG - chr3_1:49993355-49993374 None:intergenic 50.0%
TTGGTCAGGGCCAAATTTGC+AGG + chr3_1:49993864-49993883 Msa0360570:intron 50.0%
ATGGCTGTGGGAGGAATATG+CGG + chr3_1:49993915-49993934 Msa0360570:CDS 50.0%
AGTGCTACATTCGGTACCAG+GGG - chr3_1:49994530-49994549 None:intergenic 50.0%
CAGTGCTACATTCGGTACCA+GGG - chr3_1:49994531-49994550 None:intergenic 50.0%
ACAGTGCTACATTCGGTACC+AGG - chr3_1:49994532-49994551 None:intergenic 50.0%
TGTCCAACAGTGACACATGC+GGG + chr3_1:49994577-49994596 Msa0360570:intron 50.0%
CACACACACACATGAGGAGT+AGG - chr3_1:49994911-49994930 None:intergenic 50.0%
CACACACACACACACACATG+AGG - chr3_1:49994917-49994936 None:intergenic 50.0%
TGGAGGACAGACCTATGTCT+TGG + chr3_1:49995037-49995056 Msa0360570:intron 50.0%
!! AGCTCGAAGCATCGTTCTTG+GGG + chr3_1:49995130-49995149 Msa0360570:CDS 50.0%
! GTACGCGTTGTTGGTTGGTT+AGG + chr3_1:49995156-49995175 Msa0360570:CDS 50.0%
TGCAGATTGCCGTTGTGTCT+AGG + chr3_1:49995363-49995382 Msa0360570:CDS 50.0%
! TCGCCTTTGGTGTACCAGAT+AGG + chr3_1:49995393-49995412 Msa0360570:CDS 50.0%
! CGCCTTTGGTGTACCAGATA+GGG + chr3_1:49995394-49995413 Msa0360570:CDS 50.0%
TCTGGACAACTATGTCCTCC+AGG + chr3_1:49996454-49996473 Msa0360570:CDS 50.0%
!!! GTCTTTTGTAGGTGCTGGCT+TGG + chr3_1:49996537-49996556 Msa0360570:CDS 50.0%
AGGGGTAAGAGGGAGAGAGA+AGG + chr3_1:49990767-49990786 Msa0360570:CDS 55.0%
CTGTGCTCTCCCTTGTACCA+TGG + chr3_1:49993086-49993105 Msa0360570:CDS 55.0%
TACGGACCAGTGAAGGTCGA+AGG + chr3_1:49993346-49993365 Msa0360570:intron 55.0%
ACGGACCAGTGAAGGTCGAA+GGG + chr3_1:49993347-49993366 Msa0360570:intron 55.0%
TGGTCTTCAATGGCTGTGGG+AGG + chr3_1:49993906-49993925 Msa0360570:CDS 55.0%
TGGCTGTGGGAGGAATATGC+GGG + chr3_1:49993916-49993935 Msa0360570:CDS 55.0%
GTGCTACATTCGGTACCAGG+GGG - chr3_1:49994529-49994548 None:intergenic 55.0%
! GCACTGTCGCTTCAGATCGA+TGG + chr3_1:49994545-49994564 Msa0360570:intron 55.0%
TGGGAACAGTAATGTGGGCG+AGG - chr3_1:49995068-49995087 None:intergenic 55.0%
TTGGGGACAGTACGCGTTGT+TGG + chr3_1:49995147-49995166 Msa0360570:CDS 55.0%
GGACAGTACGCGTTGTTGGT+TGG + chr3_1:49995151-49995170 Msa0360570:CDS 55.0%
! GTGCCCGCATGTGTCACTGT+TGG - chr3_1:49994583-49994602 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 49990723 49996901 49990723 ID=Msa0360570;Name=Msa0360570
chr3_1 mRNA 49990723 49996901 49990723 ID=Msa0360570-mRNA-1;Parent=Msa0360570;Name=Msa0360570-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.83|0.85|0.85|1|1|7|208|490
chr3_1 exon 49990723 49990788 49990723 ID=Msa0360570-mRNA-1:exon:8820;Parent=Msa0360570-mRNA-1
chr3_1 exon 49991940 49992067 49991940 ID=Msa0360570-mRNA-1:exon:8821;Parent=Msa0360570-mRNA-1
chr3_1 exon 49993024 49993245 49993024 ID=Msa0360570-mRNA-1:exon:8822;Parent=Msa0360570-mRNA-1
chr3_1 exon 49993872 49994330 49993872 ID=Msa0360570-mRNA-1:exon:8823;Parent=Msa0360570-mRNA-1
chr3_1 exon 49995047 49995244 49995047 ID=Msa0360570-mRNA-1:exon:8824;Parent=Msa0360570-mRNA-1
chr3_1 exon 49995328 49995465 49995328 ID=Msa0360570-mRNA-1:exon:8825;Parent=Msa0360570-mRNA-1
chr3_1 exon 49996432 49996901 49996432 ID=Msa0360570-mRNA-1:exon:8826;Parent=Msa0360570-mRNA-1
chr3_1 CDS 49990723 49990788 49990723 ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1
chr3_1 CDS 49991940 49992067 49991940 ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1
chr3_1 CDS 49993024 49993245 49993024 ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1
chr3_1 CDS 49993872 49994330 49993872 ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1
chr3_1 CDS 49995047 49995244 49995047 ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1
chr3_1 CDS 49995328 49995465 49995328 ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1
chr3_1 CDS 49996432 49996693 49996432 ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1
chr3_1 three_prime_UTR 49996694 49996901 49996694 ID=Msa0360570-mRNA-1:three_prime_utr;Parent=Msa0360570-mRNA-1
Gene Sequence

>Msa0360570

ATGGTTGGTTTTGGATTAAGGGATGTGAATGTGAAAAAATTGGGAGGGGTAAGAGGGAGAGAGAAGGGTTTTAGGTCATTTGTATGGACAGCAATTTCCTATCAGCTTAAAGATAATCTTCATTTGTCACCCTCAGCTTCCCAATTTGTGTTTTCAGTTGCATTTTTTCCATGGAGCATTAAACCGTTATATGGGATACTTTCTGACTGTATCCCGATTAAAGGAAGTAAGCGGATTTCGTACTTGGTCATTGCGACTGTGCTCTCCCTTGTACCATGGTTTATTTTAGGTTTAAGTTCAACCTTGAGGAATTCAACATGGCACCTGATGGTATTCTTGACTGTGCAAAACTTAGGATCAGCCATGGCAGATGTTGTTGTTGATGCGATGATAGCCGAGGCTGTAAGATATGACAAGGCCAAATTTGCAGGAGACCTCCAATCATTATCTTGGTCTTCAATGGCTGTGGGAGGAATATGCGGGAGTTTGTTAGGGGGAATCGCGTTATCAAGTTTACAGATAGATGCTATTTTTCTTCTATTTTCTGTACTGCCTTGCATACAGTTATTATCATGCTTTTCTGTGAAGGAGACCTCTGTAAATAGCGAAGTTTTAGTTGAGGATTATATTGCAAAGGATTTGCATACAAATGGTAGTAGTGGTACGCTAGATGAAGATAGTTCTTTTACTAAAAAGTCACACAGTAGTACAAGAAAAAGAAAGAAGGGAAAAAAGAACACAAAAAATAGAACAGTAAATACCAGCAAATCGAAGATTCTGGAGAAAGGAGATTCCTTGGCAACAAAGTGGTTCCATTCCTTGAAGAAAGCAATTTATGATTTGTGTCGTGCGTTTAGACAGCCAATGATTTTGAGACCTATGTCTTGGTTTTTCCTCGCCCACATTACTGTTCCCAATCTTTCAACAGTCTTATTCTACTACGAAACGGAGGTTCTAAAGCTCGAAGCATCGTTCTTGGGGACAGTACGCGTTGTTGGTTGGTTAGGACTTATGCTCGGAACCTTCGTTTATAACCGTCACCTAAAGCATATGACGCTTAGAAGAATTCTCATGTATGCTCATGTTGCATTGGCCTTCTTGAATCTTCTGCAGATTGCCGTTGTGTCTAGGAAAAATATCGCCTTTGGTGTACCAGATAGGGTTATGGTGCTCTTTGGCTCAGCACTTGTTGATGGAATCAATCAATTCAAGTTTATGCCTTTCCTAATCTTATCTGGACAACTATGTCCTCCAGGAATTGAAGGGACATTATTTGCTCTTTTCATGTCAATAAACAACTTGGGAACAACAATAGGGTCTTTTGTAGGTGCTGGCTTGGCTTCAATATTAAACATAGATTCAGGATCTTTTGACAATCTTCTGTTAGGCATTGTTATTCATGCTTTGTGCAATTTCATTCCAATTGCTTTTCTGTTTCTGATACCAAAAGAAGCAACAGGTGCATCAGCATAG

Protein sequence

>Msa0360570

MVGFGLRDVNVKKLGGVRGREKGFRSFVWTAISYQLKDNLHLSPSASQFVFSVAFFPWSIKPLYGILSDCIPIKGSKRISYLVIATVLSLVPWFILGLSSTLRNSTWHLMVFLTVQNLGSAMADVVVDAMIAEAVRYDKAKFAGDLQSLSWSSMAVGGICGSLLGGIALSSLQIDAIFLLFSVLPCIQLLSCFSVKETSVNSEVLVEDYIAKDLHTNGSSGTLDEDSSFTKKSHSSTRKRKKGKKNTKNRTVNTSKSKILEKGDSLATKWFHSLKKAIYDLCRAFRQPMILRPMSWFFLAHITVPNLSTVLFYYETEVLKLEASFLGTVRVVGWLGLMLGTFVYNRHLKHMTLRRILMYAHVALAFLNLLQIAVVSRKNIAFGVPDRVMVLFGSALVDGINQFKFMPFLILSGQLCPPGIEGTLFALFMSINNLGTTIGSFVGAGLASILNIDSGSFDNLLLGIVIHALCNFIPIAFLFLIPKEATGASA*