Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0360570 | XP_003600052.1 | 98.507 | 469 | 7 | 0 | 22 | 490 | 27 | 495 | 0.0 | 936 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0360570 | sp|Q8RWQ5|FBT4_ARATH | 66.525 | 469 | 152 | 2 | 22 | 490 | 27 | 490 | 0.0 | 631 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0360570 | G7IXK2 | 98.507 | 469 | 7 | 0 | 22 | 490 | 27 | 495 | 0.0 | 936 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0138020 | Msa0360570 | 0.812635 | 3.838844e-51 | -8.615850e-47 |
Msa0217700 | Msa0360570 | 0.812192 | 4.797428e-51 | -8.615850e-47 |
Msa0360570 | Msa0391400 | 0.856366 | 3.376923e-62 | -8.615850e-47 |
Msa0360570 | Msa0408300 | 0.879004 | 1.775230e-69 | -8.615850e-47 |
Msa0360570 | Msa0468320 | 0.806322 | 8.702328e-50 | -8.615850e-47 |
Msa0360570 | Msa0532980 | 0.826968 | 2.027077e-54 | -8.615850e-47 |
Msa0360570 | Msa0610180 | 0.801975 | 6.986417e-49 | -8.615850e-47 |
Msa0360570 | Msa0618970 | 0.802627 | 5.127814e-49 | -8.615850e-47 |
Msa0360570 | Msa0667790 | 0.803106 | 4.084026e-49 | -8.615850e-47 |
Msa0360570 | Msa0711150 | 0.802278 | 6.052014e-49 | -8.615850e-47 |
Msa0360570 | Msa0766760 | 0.818973 | 1.481653e-52 | -8.615850e-47 |
Msa0360570 | Msa0980020 | 0.804900 | 1.729765e-49 | -8.615850e-47 |
Msa0360570 | Msa1111870 | 0.802579 | 5.246946e-49 | -8.615850e-47 |
Msa0360570 | Msa1207310 | 0.805440 | 1.333829e-49 | -8.615850e-47 |
Msa0360570 | Msa1307180 | 0.806336 | 8.643722e-50 | -8.615850e-47 |
Msa0360570 | Msa1316360 | 0.807419 | 5.101916e-50 | -8.615850e-47 |
Msa0360570 | Msa1382790 | 0.805824 | 1.107794e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0360570 | MtrunA17_Chr3g0098661 | 98.507 | 469 | 7 | 0 | 22 | 490 | 27 | 495 | 0.0 | 936 |
Msa0360570 | MtrunA17_Chr2g0293351 | 29.314 | 481 | 267 | 6 | 11 | 483 | 23 | 438 | 5.94e-63 | 211 |
Msa0360570 | MtrunA17_Chr3g0079271 | 31.236 | 461 | 259 | 3 | 22 | 482 | 112 | 514 | 1.34e-60 | 208 |
Msa0360570 | MtrunA17_Chr1g0205221 | 31.973 | 441 | 239 | 8 | 31 | 471 | 132 | 511 | 4.16e-54 | 190 |
Msa0360570 | MtrunA17_Chr1g0150001 | 26.915 | 457 | 258 | 8 | 34 | 483 | 75 | 462 | 6.43e-43 | 159 |
Msa0360570 | MtrunA17_Chr2g0293361 | 36.190 | 210 | 134 | 0 | 274 | 483 | 34 | 243 | 1.02e-38 | 141 |
Msa0360570 | MtrunA17_Chr2g0293371 | 26.877 | 413 | 229 | 6 | 79 | 483 | 1 | 348 | 1.79e-38 | 143 |
Msa0360570 | MtrunA17_Chr1g0150031 | 32.500 | 160 | 108 | 0 | 324 | 483 | 3 | 162 | 1.06e-26 | 107 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0360570 | AT5G54860.1 | 66.525 | 469 | 152 | 2 | 22 | 490 | 27 | 490 | 0.0 | 631 |
Msa0360570 | AT2G32040.2 | 30.839 | 441 | 246 | 7 | 31 | 471 | 15 | 396 | 8.87e-51 | 179 |
Msa0360570 | AT2G32040.1 | 30.839 | 441 | 246 | 7 | 31 | 471 | 146 | 527 | 1.17e-49 | 179 |
Msa0360570 | AT1G79710.2 | 26.419 | 458 | 261 | 9 | 33 | 483 | 73 | 461 | 3.33e-42 | 157 |
Msa0360570 | AT1G79710.1 | 26.419 | 458 | 261 | 9 | 33 | 483 | 73 | 461 | 3.33e-42 | 157 |
Msa0360570 | AT5G10820.1 | 25.107 | 466 | 283 | 7 | 21 | 482 | 68 | 471 | 1.40e-37 | 144 |
Msa0360570 | AT1G04570.2 | 33.962 | 212 | 140 | 0 | 271 | 482 | 137 | 348 | 1.80e-34 | 134 |
Msa0360570 | AT1G64890.1 | 34.906 | 212 | 138 | 0 | 274 | 485 | 221 | 432 | 1.65e-33 | 132 |
Msa0360570 | AT1G64890.1 | 32.597 | 181 | 121 | 1 | 22 | 201 | 30 | 210 | 1.24e-19 | 91.7 |
Msa0360570 | AT1G04570.1 | 33.962 | 212 | 140 | 0 | 271 | 482 | 285 | 496 | 2.93e-33 | 132 |
Msa0360570 | AT1G04570.1 | 33.333 | 117 | 77 | 1 | 22 | 137 | 98 | 214 | 6.08e-14 | 74.7 |
Msa0360570 | AT2G33280.2 | 32.243 | 214 | 145 | 0 | 274 | 487 | 107 | 320 | 4.80e-31 | 123 |
Msa0360570 | AT2G33280.3 | 32.243 | 214 | 145 | 0 | 274 | 487 | 181 | 394 | 2.18e-30 | 123 |
Msa0360570 | AT2G33280.3 | 38.650 | 163 | 95 | 2 | 40 | 201 | 5 | 163 | 4.09e-15 | 77.8 |
Msa0360570 | AT2G33280.1 | 32.243 | 214 | 145 | 0 | 274 | 487 | 289 | 502 | 3.96e-30 | 124 |
Msa0360570 | AT2G33280.1 | 37.569 | 181 | 108 | 2 | 22 | 201 | 95 | 271 | 9.65e-20 | 92.8 |
Msa0360570 | AT5G25050.1 | 29.612 | 206 | 142 | 1 | 281 | 483 | 252 | 457 | 6.91e-26 | 110 |
Msa0360570 | AT5G25050.1 | 32.759 | 174 | 99 | 4 | 12 | 182 | 57 | 215 | 4.23e-16 | 81.3 |
Msa0360570 | AT5G25040.5 | 27.442 | 215 | 153 | 1 | 272 | 483 | 94 | 308 | 1.39e-25 | 107 |
Msa0360570 | AT5G25040.4 | 27.442 | 215 | 153 | 1 | 272 | 483 | 241 | 455 | 6.34e-25 | 108 |
Msa0360570 | AT5G25040.4 | 32.468 | 154 | 93 | 5 | 19 | 167 | 54 | 201 | 5.99e-12 | 68.2 |
Msa0360570 | AT1G79710.3 | 22.864 | 398 | 231 | 9 | 30 | 420 | 70 | 398 | 1.43e-24 | 105 |
Msa0360570 | AT5G25040.2 | 32.278 | 158 | 107 | 0 | 326 | 483 | 323 | 480 | 7.70e-24 | 105 |
Msa0360570 | AT5G25040.2 | 32.468 | 154 | 93 | 5 | 19 | 167 | 54 | 201 | 5.83e-12 | 68.2 |
Msa0360570 | AT5G25040.1 | 26.230 | 183 | 132 | 1 | 272 | 451 | 241 | 423 | 6.83e-17 | 83.6 |
Msa0360570 | AT5G25040.1 | 32.468 | 154 | 93 | 5 | 19 | 167 | 54 | 201 | 5.12e-12 | 68.2 |
Msa0360570 | AT5G25040.3 | 32.468 | 154 | 93 | 5 | 19 | 167 | 54 | 201 | 6.54e-12 | 67.4 |
Find 110 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGCAACTGAAAACACAAAT+TGG | 0.197963 | 3_1:-49992014 | None:intergenic |
TTGGAGGTCTCCTGCAAATT+TGG | 0.210403 | 3_1:-49993874 | None:intergenic |
TCTGACTGTATCCCGATTAA+AGG | 0.215461 | 3_1:+49993031 | Msa0360570:CDS |
TGGAGCATTAAACCGTTATA+TGG | 0.254901 | 3_1:+49992045 | Msa0360570:CDS |
GATGCACCTGTTGCTTCTTT+TGG | 0.267349 | 3_1:-49996664 | None:intergenic |
CTCCAGAATCTTCGATTTGC+TGG | 0.283430 | 3_1:-49994216 | None:intergenic |
ATGCCTTTCCTAATCTTATC+TGG | 0.289468 | 3_1:+49996436 | Msa0360570:CDS |
ATCCGCTTACTTCCTTTAAT+CGG | 0.294910 | 3_1:-49993043 | None:intergenic |
TTCTAAGCGTCATATGCTTT+AGG | 0.310369 | 3_1:-49995212 | None:intergenic |
GTTACAGCGATGGTTGGTTT+TGG | 0.323351 | 3_1:+49990714 | None:intergenic |
TTTGGCTCAGCACTTGTTGA+TGG | 0.327075 | 3_1:+49995428 | Msa0360570:CDS |
TTGGTCAGGGCCAAATTTGC+AGG | 0.328122 | 3_1:+49993864 | Msa0360570:intron |
GGAATATGCGGGAGTTTGTT+AGG | 0.329268 | 3_1:+49993927 | Msa0360570:CDS |
ATCATAAATTGCTTTCTTCA+AGG | 0.340461 | 3_1:-49994273 | None:intergenic |
TACCAGCAAATCGAAGATTC+TGG | 0.353963 | 3_1:+49994214 | Msa0360570:CDS |
AACAACTTGGGAACAACAAT+AGG | 0.355575 | 3_1:+49996514 | Msa0360570:CDS |
TGTAAATTGGAAAATATTAG+AGG | 0.355576 | 3_1:+49996784 | Msa0360570:three_prime_UTR |
TTGATGAATACCATTGGAAT+TGG | 0.356869 | 3_1:+49996705 | Msa0360570:three_prime_UTR |
TCGCCTTTGGTGTACCAGAT+AGG | 0.358572 | 3_1:+49995393 | Msa0360570:CDS |
GATAGGGTTATGGTGCTCTT+TGG | 0.362387 | 3_1:+49995410 | Msa0360570:CDS |
GAATAAGACTGTTGAAAGAT+TGG | 0.368387 | 3_1:-49995085 | None:intergenic |
TCAATATTAAACATAGATTC+AGG | 0.375201 | 3_1:+49996562 | Msa0360570:CDS |
AAAGCTCGAAGCATCGTTCT+TGG | 0.380680 | 3_1:+49995128 | Msa0360570:CDS |
AAGATTATCTTTAAGCTGAT+AGG | 0.385118 | 3_1:-49991971 | None:intergenic |
AATAATGTCCCTTCAATTCC+TGG | 0.388732 | 3_1:-49996472 | None:intergenic |
AAGTAAGCGGATTTCGTACT+TGG | 0.393076 | 3_1:+49993054 | Msa0360570:CDS |
ATTGGTTACCTCAAAATCAT+TGG | 0.394424 | 3_1:-49994317 | None:intergenic |
ATCATTATCTTGGTCTTCAA+TGG | 0.396384 | 3_1:+49993896 | Msa0360570:CDS |
ATCTTGGTCTTCAATGGCTG+TGG | 0.396603 | 3_1:+49993902 | Msa0360570:CDS |
AAGCTCGAAGCATCGTTCTT+GGG | 0.399090 | 3_1:+49995129 | Msa0360570:CDS |
TCCGCTTACTTCCTTTAATC+GGG | 0.406523 | 3_1:-49993042 | None:intergenic |
GTACGCGTTGTTGGTTGGTT+AGG | 0.409250 | 3_1:+49995156 | Msa0360570:CDS |
AAGAGCACCATAACCCTATC+TGG | 0.416214 | 3_1:-49995407 | None:intergenic |
GAATATGCGGGAGTTTGTTA+GGG | 0.418448 | 3_1:+49993928 | Msa0360570:CDS |
TTGGGGACAGTACGCGTTGT+TGG | 0.424258 | 3_1:+49995147 | Msa0360570:CDS |
TGGTGTACCAGATAGGGTTA+TGG | 0.430972 | 3_1:+49995400 | Msa0360570:CDS |
GCAAAGGATTTGCATACAAA+TGG | 0.433365 | 3_1:+49994086 | Msa0360570:CDS |
ATCAGAAACAGAAAAGCAAT+TGG | 0.433826 | 3_1:-49996640 | None:intergenic |
TTGAAGACCAAGATAATGAT+TGG | 0.443377 | 3_1:-49993893 | None:intergenic |
CTATGTCCTCCAGGAATTGA+AGG | 0.448099 | 3_1:+49996463 | Msa0360570:CDS |
AATAAGACTGTTGAAAGATT+GGG | 0.450409 | 3_1:-49995084 | None:intergenic |
AACGATTCATACCCATATAA+CGG | 0.455694 | 3_1:-49992057 | None:intergenic |
CTGTGCTCTCCCTTGTACCA+TGG | 0.460291 | 3_1:+49993086 | Msa0360570:CDS |
CGCCTTTGGTGTACCAGATA+GGG | 0.464246 | 3_1:+49995394 | Msa0360570:CDS |
TTTCATGTCAATAAACAACT+TGG | 0.464904 | 3_1:+49996501 | Msa0360570:CDS |
ATAGTTGTCCAGATAAGATT+AGG | 0.465222 | 3_1:-49996444 | None:intergenic |
GAGACCTCCAATCATTATCT+TGG | 0.465996 | 3_1:+49993886 | Msa0360570:CDS |
TGCAACTGAAAACACAAATT+GGG | 0.466177 | 3_1:-49992013 | None:intergenic |
ACAACTTGGGAACAACAATA+GGG | 0.475196 | 3_1:+49996515 | Msa0360570:CDS |
TGGAGGACAGACCTATGTCT+TGG | 0.476709 | 3_1:+49995037 | Msa0360570:intron |
TTCTTGACTGTGCAAAACTT+AGG | 0.479731 | 3_1:+49993163 | Msa0360570:CDS |
AAATTGCTTTCTTCAAGGAA+TGG | 0.479777 | 3_1:-49994268 | None:intergenic |
TCTGGAGAAAGGAGATTCCT+TGG | 0.489789 | 3_1:+49994232 | Msa0360570:CDS |
CTAAAATAAACCATGGTACA+AGG | 0.490097 | 3_1:-49993096 | None:intergenic |
GGAAAATATTAGAGGAAATG+AGG | 0.496578 | 3_1:+49996792 | Msa0360570:three_prime_UTR |
GGAGCATTAAACCGTTATAT+GGG | 0.497069 | 3_1:+49992046 | Msa0360570:CDS |
CTGATACCAAAAGAAGCAAC+AGG | 0.498367 | 3_1:+49996658 | Msa0360570:CDS |
AGGGGTAAGAGGGAGAGAGA+AGG | 0.499461 | 3_1:+49990767 | Msa0360570:CDS |
CAGGTATGCTCATGTTGCAT+TGG | 0.505846 | 3_1:+49995325 | Msa0360570:intron |
TCTGGACAACTATGTCCTCC+AGG | 0.517815 | 3_1:+49996454 | Msa0360570:CDS |
TCTTGGTCTTCAATGGCTGT+GGG | 0.522835 | 3_1:+49993903 | Msa0360570:CDS |
TGCAGATTGCCGTTGTGTCT+AGG | 0.528098 | 3_1:+49995363 | Msa0360570:CDS |
TTCATGTCAATAAACAACTT+GGG | 0.529203 | 3_1:+49996502 | Msa0360570:CDS |
AAATCGAAGATTCTGGAGAA+AGG | 0.536470 | 3_1:+49994221 | Msa0360570:CDS |
GGACAGTACGCGTTGTTGGT+TGG | 0.546911 | 3_1:+49995151 | Msa0360570:CDS |
CATGATAATAACTGTATGCA+AGG | 0.547185 | 3_1:-49994008 | None:intergenic |
TAGTTATTGATGAATACCAT+TGG | 0.549832 | 3_1:+49996699 | Msa0360570:three_prime_UTR |
AGTTGAGGATTATATTGCAA+AGG | 0.550493 | 3_1:+49994070 | Msa0360570:CDS |
ATGGAACCACTTTGTTGCCA+AGG | 0.553047 | 3_1:-49994249 | None:intergenic |
TGTGCAGTTACAGCGATGGT+TGG | 0.554231 | 3_1:+49990708 | None:intergenic |
CTTGTCATATCTTACAGCCT+CGG | 0.554473 | 3_1:-49993224 | None:intergenic |
AGCTCGAAGCATCGTTCTTG+GGG | 0.557659 | 3_1:+49995130 | Msa0360570:CDS |
GCGTCATATGCTTTAGGTGA+CGG | 0.557890 | 3_1:-49995206 | None:intergenic |
AGTCTTATTCTACTACGAAA+CGG | 0.561877 | 3_1:+49995098 | Msa0360570:CDS |
GCACAGTCAAGAATACCATC+AGG | 0.566177 | 3_1:-49993153 | None:intergenic |
TGGGAACAGTAATGTGGGCG+AGG | 0.573903 | 3_1:-49995065 | None:intergenic |
GTGTATAAAACCAATTCCAA+TGG | 0.581676 | 3_1:-49996715 | None:intergenic |
TTGCATACAAATGGTAGTAG+TGG | 0.583089 | 3_1:+49994095 | Msa0360570:CDS |
AATATGCGGGAGTTTGTTAG+GGG | 0.585466 | 3_1:+49993929 | Msa0360570:CDS |
AAAGATTGGGAACAGTAATG+TGG | 0.587892 | 3_1:-49995071 | None:intergenic |
AAACACAAATTGGGAAGCTG+AGG | 0.590346 | 3_1:-49992004 | None:intergenic |
GGTTGGTTAGGACTTATGCT+CGG | 0.594212 | 3_1:+49995168 | Msa0360570:CDS |
GAATTCAACATGGCACCTGA+TGG | 0.602006 | 3_1:+49993138 | Msa0360570:CDS |
ATCAACAACAACATCTGCCA+TGG | 0.606162 | 3_1:-49993191 | None:intergenic |
ATGGCTGTGGGAGGAATATG+CGG | 0.607957 | 3_1:+49993915 | Msa0360570:CDS |
TGTCCAGATAAGATTAGGAA+AGG | 0.608005 | 3_1:-49996439 | None:intergenic |
TAAAATAAACCATGGTACAA+GGG | 0.610741 | 3_1:-49993095 | None:intergenic |
CAACCTTGAGGAATTCAACA+TGG | 0.615312 | 3_1:+49993128 | Msa0360570:CDS |
TGGTCTTCAATGGCTGTGGG+AGG | 0.618541 | 3_1:+49993906 | Msa0360570:CDS |
GTGCCATGTTGAATTCCTCA+AGG | 0.618903 | 3_1:-49993131 | None:intergenic |
TATAACGGTTTAATGCTCCA+TGG | 0.618919 | 3_1:-49992042 | None:intergenic |
AAGACCAAGATAATGATTGG+AGG | 0.620304 | 3_1:-49993890 | None:intergenic |
TATGTCCTCCAGGAATTGAA+GGG | 0.620734 | 3_1:+49996464 | Msa0360570:CDS |
TATCAACTATCAAAATACCT+AGG | 0.622712 | 3_1:-49996752 | None:intergenic |
CTTAAACCTAAAATAAACCA+TGG | 0.629672 | 3_1:-49993103 | None:intergenic |
AAGATTGGGAACAGTAATGT+GGG | 0.631493 | 3_1:-49995070 | None:intergenic |
TAGGTGACGGTTATAAACGA+AGG | 0.632468 | 3_1:-49995193 | None:intergenic |
GAGATTCCTTGGCAACAAAG+TGG | 0.632737 | 3_1:+49994243 | Msa0360570:CDS |
AACCCTATCTGGTACACCAA+AGG | 0.632946 | 3_1:-49995396 | None:intergenic |
TAGGTTTAAGTTCAACCTTG+AGG | 0.633543 | 3_1:+49993116 | Msa0360570:CDS |
TGGCTGTGGGAGGAATATGC+GGG | 0.640200 | 3_1:+49993916 | Msa0360570:CDS |
TAAAACTTCGCTATTTACAG+AGG | 0.655075 | 3_1:-49994048 | None:intergenic |
AACACAAATTGGGAAGCTGA+GGG | 0.655369 | 3_1:-49992003 | None:intergenic |
AATCTGCAGAAGATTCAAGA+AGG | 0.662867 | 3_1:-49995348 | None:intergenic |
TCCCGATTAAAGGAAGTAAG+CGG | 0.662912 | 3_1:+49993041 | Msa0360570:CDS |
GCAAAACTTAGGATCAGCCA+TGG | 0.664884 | 3_1:+49993174 | Msa0360570:CDS |
CTTATTCTACTACGAAACGG+AGG | 0.704156 | 3_1:+49995101 | Msa0360570:CDS |
TGTTGATGCGATGATAGCCG+AGG | 0.715574 | 3_1:+49993207 | Msa0360570:CDS |
AATGTCCCTTCAATTCCTGG+AGG | 0.720484 | 3_1:-49996469 | None:intergenic |
ATATGCGGGAGTTTGTTAGG+GGG | 0.728603 | 3_1:+49993930 | Msa0360570:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTAAAATGATATCTTA+AGG | + | chr3_1:49992786-49992805 | Msa0360570:intron | 10.0% |
!! | AAACTATAATTATATATGAA+TGG | - | chr3_1:49994432-49994451 | None:intergenic | 10.0% |
!! | TCATATATAATTATAGTTTA+TGG | + | chr3_1:49994433-49994452 | Msa0360570:intron | 10.0% |
!!! | TTCATTTTCTTAATTATTAT+CGG | + | chr3_1:49994614-49994633 | Msa0360570:intron | 10.0% |
!!! | TTTTTGTAAGTTAAAATATT+TGG | - | chr3_1:49994757-49994776 | None:intergenic | 10.0% |
!!! | ATAAATGTTTCTAAATTTTA+AGG | + | chr3_1:49995886-49995905 | Msa0360570:intron | 10.0% |
!!! | TATAACCTAATATTTTATAT+AGG | + | chr3_1:49995911-49995930 | Msa0360570:intron | 10.0% |
!!! | ATAACCTAATATTTTATATA+GGG | + | chr3_1:49995912-49995931 | Msa0360570:intron | 10.0% |
!!! | TTTCAAAAAAGTGAAATTTT+TGG | + | chr3_1:49991332-49991351 | Msa0360570:intron | 15.0% |
!!! | TTCAAAAAAGTGAAATTTTT+GGG | + | chr3_1:49991333-49991352 | Msa0360570:intron | 15.0% |
!!! | AAAGTAGATATTTGAAATTT+TGG | + | chr3_1:49994344-49994363 | Msa0360570:intron | 15.0% |
!!! | GATTATTACTAACTATTTTA+CGG | - | chr3_1:49995003-49995022 | None:intergenic | 15.0% |
!! | AAAAAAAATACTATCTTTCA+GGG | - | chr3_1:49995678-49995697 | None:intergenic | 15.0% |
!! | AAAAAAAAATACTATCTTTC+AGG | - | chr3_1:49995679-49995698 | None:intergenic | 15.0% |
!!! | AGTATTTTTTTTTTTGCTTA+TGG | + | chr3_1:49995686-49995705 | Msa0360570:intron | 15.0% |
!! | TACCATCAAGATATATTTAA+AGG | - | chr3_1:49990857-49990876 | None:intergenic | 20.0% |
!!! | CTTGTTTTATAAAAAATCAC+TGG | - | chr3_1:49990943-49990962 | None:intergenic | 20.0% |
!! | AACATTAAAATCAAAATGAC+AGG | + | chr3_1:49991170-49991189 | Msa0360570:intron | 20.0% |
!! | ACATTAAAATCAAAATGACA+GGG | + | chr3_1:49991171-49991190 | Msa0360570:intron | 20.0% |
!!! | ATCTGGTAGTTTTATTTATT+GGG | + | chr3_1:49991531-49991550 | Msa0360570:intron | 20.0% |
!! | CTATCTTATAAGTTAGATAT+AGG | + | chr3_1:49992211-49992230 | Msa0360570:intron | 20.0% |
!! | TTATAAGTTAGATATAGGAT+TGG | + | chr3_1:49992216-49992235 | Msa0360570:intron | 20.0% |
!! | AAAATGATATCTTAAGGTTA+AGG | + | chr3_1:49992792-49992811 | Msa0360570:intron | 20.0% |
!! | ATTAACCAAACTAGATTATA+AGG | - | chr3_1:49992995-49993014 | None:intergenic | 20.0% |
!! | CAAATATCTACTTTAATGAT+TGG | - | chr3_1:49994338-49994357 | None:intergenic | 20.0% |
!!! | CTGTTTACTTTTTAAGATTA+TGG | + | chr3_1:49994367-49994386 | Msa0360570:intron | 20.0% |
!! | AACTAATAAAAAGCAATGTT+CGG | + | chr3_1:49994845-49994864 | Msa0360570:intron | 20.0% |
!!! | TATGTTCTTCTTTTTATTAC+AGG | + | chr3_1:49995306-49995325 | Msa0360570:intron | 20.0% |
!! | GTAATATATGTACTATATTG+AGG | - | chr3_1:49995803-49995822 | None:intergenic | 20.0% |
!! | TAGTCCCTATATAAAATATT+AGG | - | chr3_1:49995919-49995938 | None:intergenic | 20.0% |
!!! | ATTTTTTGTGTTATATCCTT+GGG | + | chr3_1:49996144-49996163 | Msa0360570:intron | 20.0% |
!! | TCAATATTAAACATAGATTC+AGG | + | chr3_1:49996562-49996581 | Msa0360570:CDS | 20.0% |
!!! | AATATTTTCCAATTTACAAG+TGG | - | chr3_1:49996782-49996801 | None:intergenic | 20.0% |
!! | TGTAAATTGGAAAATATTAG+AGG | + | chr3_1:49996784-49996803 | Msa0360570:three_prime_UTR | 20.0% |
! | GATGTGAATGTGAAAAAATT+GGG | + | chr3_1:49990744-49990763 | Msa0360570:CDS | 25.0% |
! | GACCTTTAAATATATCTTGA+TGG | + | chr3_1:49990852-49990871 | Msa0360570:intron | 25.0% |
!!! | TAAAAAATCACTGGTTTGAA+CGG | - | chr3_1:49990934-49990953 | None:intergenic | 25.0% |
!!! | TTGATTTTAATGTTCATGAG+TGG | - | chr3_1:49991164-49991183 | None:intergenic | 25.0% |
!!! | TGGAAGTTATTTGATTTTGA+CGG | - | chr3_1:49991203-49991222 | None:intergenic | 25.0% |
!!! | GATCTGGTAGTTTTATTTAT+TGG | + | chr3_1:49991530-49991549 | Msa0360570:intron | 25.0% |
! | AAAACTTCTAATTACTTGTC+CGG | - | chr3_1:49991786-49991805 | None:intergenic | 25.0% |
! | AAGATTATCTTTAAGCTGAT+AGG | - | chr3_1:49991974-49991993 | None:intergenic | 25.0% |
! | GTAGAGATACTTAAGATATA+TGG | + | chr3_1:49992310-49992329 | Msa0360570:intron | 25.0% |
!! | TTTTCTAAGCTACATAACAT+AGG | - | chr3_1:49992430-49992449 | None:intergenic | 25.0% |
! | TTCTGACATATTTGAGAATA+TGG | - | chr3_1:49992571-49992590 | None:intergenic | 25.0% |
!!! | TTTTACTGGAAGCATATTTT+CGG | - | chr3_1:49992601-49992620 | None:intergenic | 25.0% |
!! | AGTAAAAGGACACAATTTTA+CGG | + | chr3_1:49992614-49992633 | Msa0360570:intron | 25.0% |
!! | AATTAGAAAGGAAAAGTACA+AGG | + | chr3_1:49992659-49992678 | Msa0360570:intron | 25.0% |
!! | TGTTTTCAACACATATTAGT+TGG | - | chr3_1:49992895-49992914 | None:intergenic | 25.0% |
! | TAAAATAAACCATGGTACAA+GGG | - | chr3_1:49993098-49993117 | None:intergenic | 25.0% |
! | CTTAAACCTAAAATAAACCA+TGG | - | chr3_1:49993106-49993125 | None:intergenic | 25.0% |
! | TTATCTTGGACAATGAAATT+AGG | - | chr3_1:49993269-49993288 | None:intergenic | 25.0% |
! | TTGATCTAACAACTGAAATA+AGG | - | chr3_1:49993433-49993452 | None:intergenic | 25.0% |
! | AACACTTAATCATAGAGAAT+AGG | - | chr3_1:49993837-49993856 | None:intergenic | 25.0% |
! | TAGTACAAGAAAAAGAAAGA+AGG | + | chr3_1:49994160-49994179 | Msa0360570:CDS | 25.0% |
! | AGTACAAGAAAAAGAAAGAA+GGG | + | chr3_1:49994161-49994180 | Msa0360570:CDS | 25.0% |
! | ATCATAAATTGCTTTCTTCA+AGG | - | chr3_1:49994276-49994295 | None:intergenic | 25.0% |
! | TTTATGGTTAATTTACATCC+TGG | + | chr3_1:49994449-49994468 | Msa0360570:intron | 25.0% |
! | AATATTTGGCCATAATGTAA+AGG | - | chr3_1:49994743-49994762 | None:intergenic | 25.0% |
!! | ATAATCTCTGTTTTATGTTG+TGG | + | chr3_1:49995017-49995036 | Msa0360570:intron | 25.0% |
! | AATAAGACTGTTGAAAGATT+GGG | - | chr3_1:49995087-49995106 | None:intergenic | 25.0% |
! | TTAAAGGGACTAATTCAATA+TGG | - | chr3_1:49995748-49995767 | None:intergenic | 25.0% |
!! | ACCGAAAAAGTGTATATTAA+AGG | + | chr3_1:49995941-49995960 | Msa0360570:intron | 25.0% |
!!! | CCCTTTAATATACACTTTTT+CGG | - | chr3_1:49995945-49995964 | None:intergenic | 25.0% |
!! | CCGAAAAAGTGTATATTAAA+GGG | + | chr3_1:49995942-49995961 | Msa0360570:intron | 25.0% |
! | CAAGGATATAACACAAAAAA+TGG | - | chr3_1:49996145-49996164 | None:intergenic | 25.0% |
!!! | CATTTTTTGTGTTATATCCT+TGG | + | chr3_1:49996143-49996162 | Msa0360570:intron | 25.0% |
!!! | TTTTTTGTGTTATATCCTTG+GGG | + | chr3_1:49996145-49996164 | Msa0360570:intron | 25.0% |
! | TTTCATGTCAATAAACAACT+TGG | + | chr3_1:49996501-49996520 | Msa0360570:CDS | 25.0% |
! | TTCATGTCAATAAACAACTT+GGG | + | chr3_1:49996502-49996521 | Msa0360570:CDS | 25.0% |
! | TAGTTATTGATGAATACCAT+TGG | + | chr3_1:49996699-49996718 | Msa0360570:three_prime_UTR | 25.0% |
! | TATCAACTATCAAAATACCT+AGG | - | chr3_1:49996755-49996774 | None:intergenic | 25.0% |
!! | GATATTTTCCACTTGTAAAT+TGG | + | chr3_1:49996771-49996790 | Msa0360570:three_prime_UTR | 25.0% |
GGATGTGAATGTGAAAAAAT+TGG | + | chr3_1:49990743-49990762 | Msa0360570:CDS | 30.0% | |
TGAATGTGAAAAAATTGGGA+GGG | + | chr3_1:49990748-49990767 | Msa0360570:CDS | 30.0% | |
! | ATCTTGATGGTATACAAAAG+TGG | + | chr3_1:49990865-49990884 | Msa0360570:intron | 30.0% |
!! | ATTTTAATGTTCATGAGTGG+AGG | - | chr3_1:49991161-49991180 | None:intergenic | 30.0% |
!! | CATTTGGGTTTTCATTTCTT+TGG | + | chr3_1:49991393-49991412 | Msa0360570:intron | 30.0% |
TCTTTGTGTGAGATTATTGA+TGG | + | chr3_1:49991488-49991507 | Msa0360570:intron | 30.0% | |
CTTTGTGTGAGATTATTGAT+GGG | + | chr3_1:49991489-49991508 | Msa0360570:intron | 30.0% | |
!!! | TTTGTTTTTCCTTTGAGATC+TGG | + | chr3_1:49991514-49991533 | Msa0360570:intron | 30.0% |
ATAAAACTACCAGATCTCAA+AGG | - | chr3_1:49991526-49991545 | None:intergenic | 30.0% | |
TTGAATGTAATCACAAGTGT+TGG | + | chr3_1:49991723-49991742 | Msa0360570:intron | 30.0% | |
! | GGACAAGTAATTAGAAGTTT+TGG | + | chr3_1:49991785-49991804 | Msa0360570:intron | 30.0% |
ATTAAGAACTCTATTGATGC+AGG | + | chr3_1:49991918-49991937 | Msa0360570:intron | 30.0% | |
TTAAGAACTCTATTGATGCA+GGG | + | chr3_1:49991919-49991938 | Msa0360570:intron | 30.0% | |
TGCAACTGAAAACACAAATT+GGG | - | chr3_1:49992016-49992035 | None:intergenic | 30.0% | |
ATGCAACTGAAAACACAAAT+TGG | - | chr3_1:49992017-49992036 | None:intergenic | 30.0% | |
!!! | TTTCAGTTGCATTTTTTCCA+TGG | + | chr3_1:49992025-49992044 | Msa0360570:CDS | 30.0% |
AACGATTCATACCCATATAA+CGG | - | chr3_1:49992060-49992079 | None:intergenic | 30.0% | |
ATACATGATACTCAATTGAG+AGG | - | chr3_1:49992089-49992108 | None:intergenic | 30.0% | |
CTCAATTGAGTATCATGTAT+CGG | + | chr3_1:49992089-49992108 | Msa0360570:intron | 30.0% | |
TATCATGTATCGGATTTAGT+TGG | + | chr3_1:49992099-49992118 | Msa0360570:intron | 30.0% | |
TGTAGCTTAGAAAACTAGAA+CGG | + | chr3_1:49992436-49992455 | Msa0360570:intron | 30.0% | |
!! | TTTACTGGAAGCATATTTTC+GGG | - | chr3_1:49992600-49992619 | None:intergenic | 30.0% |
GAAAATATGCTTCCAGTAAA+AGG | + | chr3_1:49992600-49992619 | Msa0360570:intron | 30.0% | |
! | GTAAAATTGTGTCCTTTTAC+TGG | - | chr3_1:49992615-49992634 | None:intergenic | 30.0% |
!! | GATTTACTTTTCTCTGTCAT+TGG | + | chr3_1:49992749-49992768 | Msa0360570:intron | 30.0% |
AATATGTGTTGAAAACAGCA+AGG | + | chr3_1:49992898-49992917 | Msa0360570:intron | 30.0% | |
TGCTTCCTTATAATCTAGTT+TGG | + | chr3_1:49992987-49993006 | Msa0360570:intron | 30.0% | |
TAGTTTGGTTAATGATGAAC+AGG | + | chr3_1:49993002-49993021 | Msa0360570:intron | 30.0% | |
CTAAAATAAACCATGGTACA+AGG | - | chr3_1:49993099-49993118 | None:intergenic | 30.0% | |
!! | CTTGTACCATGGTTTATTTT+AGG | + | chr3_1:49993097-49993116 | Msa0360570:CDS | 30.0% |
CAATATGCAACAGTTTATCT+TGG | - | chr3_1:49993283-49993302 | None:intergenic | 30.0% | |
AGAAATACATCCATCATAGA+AGG | - | chr3_1:49993468-49993487 | None:intergenic | 30.0% | |
CACATACAATGCAAAGAAAT+TGG | - | chr3_1:49993502-49993521 | None:intergenic | 30.0% | |
! | TTTGCAGAGTTCTCTTTTTA+AGG | + | chr3_1:49993564-49993583 | Msa0360570:intron | 30.0% |
TCAAATTAGTCAATCCAAAC+AGG | - | chr3_1:49993596-49993615 | None:intergenic | 30.0% | |
! | AATGAGTTGAAAACAGCTTA+TGG | - | chr3_1:49993685-49993704 | None:intergenic | 30.0% |
!!! | AGCTGTTTTTGTAAGCTATT+CGG | - | chr3_1:49993721-49993740 | None:intergenic | 30.0% |
TGATTAAGTGTTTGCTTTGT+TGG | + | chr3_1:49993845-49993864 | Msa0360570:intron | 30.0% | |
TTGAAGACCAAGATAATGAT+TGG | - | chr3_1:49993896-49993915 | None:intergenic | 30.0% | |
! | ATCATTATCTTGGTCTTCAA+TGG | + | chr3_1:49993896-49993915 | Msa0360570:CDS | 30.0% |
CATGATAATAACTGTATGCA+AGG | - | chr3_1:49994011-49994030 | None:intergenic | 30.0% | |
! | ATTATCATGCTTTTCTGTGA+AGG | + | chr3_1:49994022-49994041 | Msa0360570:CDS | 30.0% |
TAAAACTTCGCTATTTACAG+AGG | - | chr3_1:49994051-49994070 | None:intergenic | 30.0% | |
!!! | AAATAGCGAAGTTTTAGTTG+AGG | + | chr3_1:49994055-49994074 | Msa0360570:CDS | 30.0% |
AGTTGAGGATTATATTGCAA+AGG | + | chr3_1:49994070-49994089 | Msa0360570:CDS | 30.0% | |
AAATTGCTTTCTTCAAGGAA+TGG | - | chr3_1:49994271-49994290 | None:intergenic | 30.0% | |
ATTGGTTACCTCAAAATCAT+TGG | - | chr3_1:49994320-49994339 | None:intergenic | 30.0% | |
TATTGAAAAGACCAGATTTC+AGG | - | chr3_1:49994496-49994515 | None:intergenic | 30.0% | |
TCCAAACATGTTGACATTAA+AGG | + | chr3_1:49994671-49994690 | Msa0360570:intron | 30.0% | |
ACCTTTAATGTCAACATGTT+TGG | - | chr3_1:49994675-49994694 | None:intergenic | 30.0% | |
GAATAAGACTGTTGAAAGAT+TGG | - | chr3_1:49995088-49995107 | None:intergenic | 30.0% | |
!! | AGTCTTATTCTACTACGAAA+CGG | + | chr3_1:49995098-49995117 | Msa0360570:CDS | 30.0% |
AATTCTCATGTAAGCAACTA+AGG | + | chr3_1:49995236-49995255 | Msa0360570:intron | 30.0% | |
!! | GCAACTAAGGATTGTTTTAT+TGG | + | chr3_1:49995249-49995268 | Msa0360570:intron | 30.0% |
!! | CTAAGGATTGTTTTATTGGT+TGG | + | chr3_1:49995253-49995272 | Msa0360570:intron | 30.0% |
! | GATATTTTTCCTAGACACAA+CGG | - | chr3_1:49995375-49995394 | None:intergenic | 30.0% |
!!! | TTCATGCTGATTTTCATGTT+GGG | - | chr3_1:49995545-49995564 | None:intergenic | 30.0% |
!!! | ATTCATGCTGATTTTCATGT+TGG | - | chr3_1:49995546-49995565 | None:intergenic | 30.0% |
AACATGAAAATCAGCATGAA+TGG | + | chr3_1:49995545-49995564 | Msa0360570:intron | 30.0% | |
CTATCTTTCAGGGATTAAAA+AGG | - | chr3_1:49995668-49995687 | None:intergenic | 30.0% | |
TACAAGAACTAATTCAGCAT+AGG | + | chr3_1:49995820-49995839 | Msa0360570:intron | 30.0% | |
AATAGGTATTATTAGCTCAG+AGG | + | chr3_1:49996027-49996046 | Msa0360570:intron | 30.0% | |
ATAGGTATTATTAGCTCAGA+GGG | + | chr3_1:49996028-49996047 | Msa0360570:intron | 30.0% | |
CAACAAAAGCTATGGAAAAT+AGG | - | chr3_1:49996096-49996115 | None:intergenic | 30.0% | |
TTACCAGAGAAAAATCAGAA+GGG | - | chr3_1:49996400-49996419 | None:intergenic | 30.0% | |
TTTACCAGAGAAAAATCAGA+AGG | - | chr3_1:49996401-49996420 | None:intergenic | 30.0% | |
TCTCTGGTAAAAAAAAATGC+AGG | + | chr3_1:49996410-49996429 | Msa0360570:intron | 30.0% | |
ATAGTTGTCCAGATAAGATT+AGG | - | chr3_1:49996447-49996466 | None:intergenic | 30.0% | |
! | TCTTTTGACAATCTTCTGTT+AGG | + | chr3_1:49996586-49996605 | Msa0360570:CDS | 30.0% |
ATCAGAAACAGAAAAGCAAT+TGG | - | chr3_1:49996643-49996662 | None:intergenic | 30.0% | |
TTGATGAATACCATTGGAAT+TGG | + | chr3_1:49996705-49996724 | Msa0360570:three_prime_UTR | 30.0% | |
GTGTATAAAACCAATTCCAA+TGG | - | chr3_1:49996718-49996737 | None:intergenic | 30.0% | |
!! | CACTTCAAATAGTTTTACCT+AGG | + | chr3_1:49996735-49996754 | Msa0360570:three_prime_UTR | 30.0% |
GGAAAATATTAGAGGAAATG+AGG | + | chr3_1:49996792-49996811 | Msa0360570:three_prime_UTR | 30.0% | |
GTGAATGTGAAAAAATTGGG+AGG | + | chr3_1:49990747-49990766 | Msa0360570:CDS | 35.0% | |
GAATGTGAAAAAATTGGGAG+GGG | + | chr3_1:49990749-49990768 | Msa0360570:CDS | 35.0% | |
ATATTGTCGAAACCGTTAGA+GGG | + | chr3_1:49991222-49991241 | Msa0360570:intron | 35.0% | |
ACTAAGAACACAGAGAAAGA+GGG | + | chr3_1:49991309-49991328 | Msa0360570:intron | 35.0% | |
TTGGGTTAACAATGATCCAA+TGG | + | chr3_1:49991351-49991370 | Msa0360570:intron | 35.0% | |
AAGATGAAGAAGTGAAACCT+GGG | - | chr3_1:49991441-49991460 | None:intergenic | 35.0% | |
AAAGATGAAGAAGTGAAACC+TGG | - | chr3_1:49991442-49991461 | None:intergenic | 35.0% | |
! | ATTCTACGTGTTGATCTATG+AGG | + | chr3_1:49991648-49991667 | Msa0360570:intron | 35.0% |
TGCATGACACTAACATATGT+TGG | + | chr3_1:49991757-49991776 | Msa0360570:intron | 35.0% | |
!!! | TAGAAGTTTTGGTGCTATAG+AGG | + | chr3_1:49991796-49991815 | Msa0360570:intron | 35.0% |
!!! | AGGGTTTTAGGTCATTTGTA+TGG | + | chr3_1:49991938-49991957 | Msa0360570:intron | 35.0% |
TATAACGGTTTAATGCTCCA+TGG | - | chr3_1:49992045-49992064 | None:intergenic | 35.0% | |
! | TGGAGCATTAAACCGTTATA+TGG | + | chr3_1:49992045-49992064 | Msa0360570:CDS | 35.0% |
! | GGAGCATTAAACCGTTATAT+GGG | + | chr3_1:49992046-49992065 | Msa0360570:CDS | 35.0% |
TGTATCGGATTTAGTTGGTT+TGG | + | chr3_1:49992104-49992123 | Msa0360570:intron | 35.0% | |
! | CTATGTCACTTGTTCTTTGT+AGG | - | chr3_1:49992496-49992515 | None:intergenic | 35.0% |
! | AAAAGGACACAATTTTACGG+TGG | + | chr3_1:49992617-49992636 | Msa0360570:intron | 35.0% |
GAGCAATCGTCTAATTAGAA+AGG | + | chr3_1:49992647-49992666 | Msa0360570:intron | 35.0% | |
TTCTCTGTCATTGGAATATG+AGG | + | chr3_1:49992758-49992777 | Msa0360570:intron | 35.0% | |
ATCCGCTTACTTCCTTTAAT+CGG | - | chr3_1:49993046-49993065 | None:intergenic | 35.0% | |
! | TAGGTTTAAGTTCAACCTTG+AGG | + | chr3_1:49993116-49993135 | Msa0360570:CDS | 35.0% |
TTCTTGACTGTGCAAAACTT+AGG | + | chr3_1:49993163-49993182 | Msa0360570:CDS | 35.0% | |
TTGGAAGCTTATCTATATGC+AGG | - | chr3_1:49993315-49993334 | None:intergenic | 35.0% | |
CTTCCAATCTCTCAATACTA+CGG | + | chr3_1:49993328-49993347 | Msa0360570:intron | 35.0% | |
GTCACAAAATTAAAGCGATC+TGG | - | chr3_1:49993384-49993403 | None:intergenic | 35.0% | |
CATTTGTCAACCTTCTATGA+TGG | + | chr3_1:49993455-49993474 | Msa0360570:intron | 35.0% | |
!!! | GCTGTTTTTGTAAGCTATTC+GGG | - | chr3_1:49993720-49993739 | None:intergenic | 35.0% |
TCATAGAGAATAGGCATGTT+TGG | - | chr3_1:49993828-49993847 | None:intergenic | 35.0% | |
AAGACCAAGATAATGATTGG+AGG | - | chr3_1:49993893-49993912 | None:intergenic | 35.0% | |
GCAAAGGATTTGCATACAAA+TGG | + | chr3_1:49994086-49994105 | Msa0360570:CDS | 35.0% | |
TTGCATACAAATGGTAGTAG+TGG | + | chr3_1:49994095-49994114 | Msa0360570:CDS | 35.0% | |
! | AAATCGAAGATTCTGGAGAA+AGG | + | chr3_1:49994221-49994240 | Msa0360570:CDS | 35.0% |
! | TTAGACAGCCAATGATTTTG+AGG | + | chr3_1:49994309-49994328 | Msa0360570:CDS | 35.0% |
TCCTATTTGTTCCTGAAATC+TGG | + | chr3_1:49994482-49994501 | Msa0360570:intron | 35.0% | |
ACCAGATTTCAGGAACAAAT+AGG | - | chr3_1:49994486-49994505 | None:intergenic | 35.0% | |
CTACATCCTCCTTTACATTA+TGG | + | chr3_1:49994731-49994750 | Msa0360570:intron | 35.0% | |
ATTTGGCCATAATGTAAAGG+AGG | - | chr3_1:49994740-49994759 | None:intergenic | 35.0% | |
! | TGAATTAGCTTCATTCTGTG+AGG | - | chr3_1:49994968-49994987 | None:intergenic | 35.0% |
! | ATCTCTGTTTTATGTTGTGG+AGG | + | chr3_1:49995020-49995039 | Msa0360570:intron | 35.0% |
AAGATTGGGAACAGTAATGT+GGG | - | chr3_1:49995073-49995092 | None:intergenic | 35.0% | |
AAAGATTGGGAACAGTAATG+TGG | - | chr3_1:49995074-49995093 | None:intergenic | 35.0% | |
TTCTAAGCGTCATATGCTTT+AGG | - | chr3_1:49995215-49995234 | None:intergenic | 35.0% | |
AATCTGCAGAAGATTCAAGA+AGG | - | chr3_1:49995351-49995370 | None:intergenic | 35.0% | |
TCTAGGAAAAATATCGCCTT+TGG | + | chr3_1:49995380-49995399 | Msa0360570:CDS | 35.0% | |
! | TTTTTGCTTAAGCATGTGCA+TGG | + | chr3_1:49995499-49995518 | Msa0360570:intron | 35.0% |
GGACAAAATTTAAGCTAGTG+AGG | - | chr3_1:49995647-49995666 | None:intergenic | 35.0% | |
AGCATAGGCCAAATATTACA+CGG | + | chr3_1:49995835-49995854 | Msa0360570:intron | 35.0% | |
GGTTTAGTCCGTGTAATATT+TGG | - | chr3_1:49995846-49995865 | None:intergenic | 35.0% | |
!!! | TAGTTTGTTCCTCGTTGTTT+TGG | - | chr3_1:49995867-49995886 | None:intergenic | 35.0% |
ATTTACTTTATCACTGCACC+TGG | + | chr3_1:49995980-49995999 | Msa0360570:intron | 35.0% | |
TTTACCAAGCACATCTCAAT+AGG | + | chr3_1:49996010-49996029 | Msa0360570:intron | 35.0% | |
AATACCTATTGAGATGTGCT+TGG | - | chr3_1:49996017-49996036 | None:intergenic | 35.0% | |
GTTTCAAGCAACAAAAGCTA+TGG | - | chr3_1:49996104-49996123 | None:intergenic | 35.0% | |
TTATATCCTTGGGGTCTAAT+TGG | + | chr3_1:49996154-49996173 | Msa0360570:intron | 35.0% | |
TCATAAGTTCTTCACTCTTC+AGG | + | chr3_1:49996283-49996302 | Msa0360570:intron | 35.0% | |
CATAAGTTCTTCACTCTTCA+GGG | + | chr3_1:49996284-49996303 | Msa0360570:intron | 35.0% | |
ATGCCTTTCCTAATCTTATC+TGG | + | chr3_1:49996436-49996455 | Msa0360570:CDS | 35.0% | |
TGTCCAGATAAGATTAGGAA+AGG | - | chr3_1:49996442-49996461 | None:intergenic | 35.0% | |
AATAATGTCCCTTCAATTCC+TGG | - | chr3_1:49996475-49996494 | None:intergenic | 35.0% | |
AACAACTTGGGAACAACAAT+AGG | + | chr3_1:49996514-49996533 | Msa0360570:CDS | 35.0% | |
ACAACTTGGGAACAACAATA+GGG | + | chr3_1:49996515-49996534 | Msa0360570:CDS | 35.0% | |
! | ACAACAATAGGGTCTTTTGT+AGG | + | chr3_1:49996526-49996545 | Msa0360570:CDS | 35.0% |
AAAAAATTGGGAGGGGTAAG+AGG | + | chr3_1:49990756-49990775 | Msa0360570:CDS | 40.0% | |
AAAAATTGGGAGGGGTAAGA+GGG | + | chr3_1:49990757-49990776 | Msa0360570:CDS | 40.0% | |
CTCTAACGGTTTCGACAATA+TGG | - | chr3_1:49991223-49991242 | None:intergenic | 40.0% | |
CATATTGTCGAAACCGTTAG+AGG | + | chr3_1:49991221-49991240 | Msa0360570:intron | 40.0% | |
AGTTTCAGCTTTCCCTCTAA+CGG | - | chr3_1:49991237-49991256 | None:intergenic | 40.0% | |
CACTAAGAACACAGAGAAAG+AGG | + | chr3_1:49991308-49991327 | Msa0360570:intron | 40.0% | |
CAATGATCCAATGGACGAAT+CGG | + | chr3_1:49991360-49991379 | Msa0360570:intron | 40.0% | |
AATCGGTTGAATGCTGCATT+TGG | + | chr3_1:49991377-49991396 | Msa0360570:intron | 40.0% | |
ATCGGTTGAATGCTGCATTT+GGG | + | chr3_1:49991378-49991397 | Msa0360570:intron | 40.0% | |
TTGCTTGATTTACTTCACCC+AGG | + | chr3_1:49991421-49991440 | Msa0360570:intron | 40.0% | |
!! | CACAAGTGTTGGTGTTGTTT+CGG | + | chr3_1:49991734-49991753 | Msa0360570:intron | 40.0% |
CACTAACATATGTTGGACAC+CGG | + | chr3_1:49991764-49991783 | Msa0360570:intron | 40.0% | |
! | CTCTATTGATGCAGGGTTTT+AGG | + | chr3_1:49991926-49991945 | Msa0360570:intron | 40.0% |
AACACAAATTGGGAAGCTGA+GGG | - | chr3_1:49992006-49992025 | None:intergenic | 40.0% | |
AAACACAAATTGGGAAGCTG+AGG | - | chr3_1:49992007-49992026 | None:intergenic | 40.0% | |
AGGTGCAAAGAAAGCAACAT+AGG | - | chr3_1:49992476-49992495 | None:intergenic | 40.0% | |
TCTGACTGTATCCCGATTAA+AGG | + | chr3_1:49993031-49993050 | Msa0360570:CDS | 40.0% | |
TCCCGATTAAAGGAAGTAAG+CGG | + | chr3_1:49993041-49993060 | Msa0360570:CDS | 40.0% | |
TCCGCTTACTTCCTTTAATC+GGG | - | chr3_1:49993045-49993064 | None:intergenic | 40.0% | |
! | AAGTAAGCGGATTTCGTACT+TGG | + | chr3_1:49993054-49993073 | Msa0360570:CDS | 40.0% |
CAACCTTGAGGAATTCAACA+TGG | + | chr3_1:49993128-49993147 | Msa0360570:CDS | 40.0% | |
ATCAACAACAACATCTGCCA+TGG | - | chr3_1:49993194-49993213 | None:intergenic | 40.0% | |
CTTGTCATATCTTACAGCCT+CGG | - | chr3_1:49993227-49993246 | None:intergenic | 40.0% | |
!!! | TTTTAAGGCCTGTTCCTGTT+TGG | + | chr3_1:49993579-49993598 | Msa0360570:intron | 40.0% |
TAGTCAATCCAAACAGGAAC+AGG | - | chr3_1:49993590-49993609 | None:intergenic | 40.0% | |
! | AAGTGTTTGCTTTGTTGGTC+AGG | + | chr3_1:49993850-49993869 | Msa0360570:intron | 40.0% |
! | AGTGTTTGCTTTGTTGGTCA+GGG | + | chr3_1:49993851-49993870 | Msa0360570:intron | 40.0% |
GAGACCTCCAATCATTATCT+TGG | + | chr3_1:49993886-49993905 | Msa0360570:CDS | 40.0% | |
!! | GAATATGCGGGAGTTTGTTA+GGG | + | chr3_1:49993928-49993947 | Msa0360570:CDS | 40.0% |
!! | AATATGCGGGAGTTTGTTAG+GGG | + | chr3_1:49993929-49993948 | Msa0360570:CDS | 40.0% |
TACCAGCAAATCGAAGATTC+TGG | + | chr3_1:49994214-49994233 | Msa0360570:CDS | 40.0% | |
AAATAGGAAGCTTCAGAACC+AGG | - | chr3_1:49994470-49994489 | None:intergenic | 40.0% | |
! | ATCGGTGTCTGTGTTTGTAT+CGG | + | chr3_1:49994632-49994651 | Msa0360570:intron | 40.0% |
CTTATTCTACTACGAAACGG+AGG | + | chr3_1:49995101-49995120 | Msa0360570:CDS | 40.0% | |
! | TAGGTGACGGTTATAAACGA+AGG | - | chr3_1:49995196-49995215 | None:intergenic | 40.0% |
AGCTAGTGAGGAATGAAAAC+TGG | - | chr3_1:49995635-49995654 | None:intergenic | 40.0% | |
TGCTTGGTAAAGATGAATCC+AGG | - | chr3_1:49996001-49996020 | None:intergenic | 40.0% | |
ATCAATCCAATTAGACCCCA+AGG | - | chr3_1:49996163-49996182 | None:intergenic | 40.0% | |
! | AAGCCCTTCTGATTTTTCTC+TGG | + | chr3_1:49996394-49996413 | Msa0360570:intron | 40.0% |
TATGTCCTCCAGGAATTGAA+GGG | + | chr3_1:49996464-49996483 | Msa0360570:CDS | 40.0% | |
CTGATACCAAAAGAAGCAAC+AGG | + | chr3_1:49996658-49996677 | Msa0360570:CDS | 40.0% | |
TAAGAGGGAGAGAGAAGGTA+GGG | + | chr3_1:49990772-49990791 | Msa0360570:intron | 45.0% | |
!! | GTAGGGAAATGGATTGTGTG+AGG | + | chr3_1:49990789-49990808 | Msa0360570:intron | 45.0% |
CCATCAACTAAGTGGTTCAC+CGG | - | chr3_1:49990895-49990914 | None:intergenic | 45.0% | |
AGGGTGAACCATCAACTAAG+TGG | - | chr3_1:49990903-49990922 | None:intergenic | 45.0% | |
GGTTTGAACGGTGATGTCTA+GGG | - | chr3_1:49990922-49990941 | None:intergenic | 45.0% | |
TGGTTTGAACGGTGATGTCT+AGG | - | chr3_1:49990923-49990942 | None:intergenic | 45.0% | |
TAATCTCACGTGGCAAGTTC+TGG | + | chr3_1:49991088-49991107 | Msa0360570:intron | 45.0% | |
!! | GCAAGTTCTGGTTCGATTCA+TGG | + | chr3_1:49991100-49991119 | Msa0360570:intron | 45.0% |
!! | CATTCAACCGATTCGTCCAT+TGG | - | chr3_1:49991370-49991389 | None:intergenic | 45.0% |
GTCAGTATCGTCTCTAGTGT+CGG | - | chr3_1:49991676-49991695 | None:intergenic | 45.0% | |
!! | GTTGGTTTGGTATGTAGCGT+CGG | + | chr3_1:49992117-49992136 | Msa0360570:intron | 45.0% |
!! | TATGTAGCGTCGGTGTAGAA+AGG | + | chr3_1:49992127-49992146 | Msa0360570:intron | 45.0% |
! | AGGACACAATTTTACGGTGG+TGG | + | chr3_1:49992620-49992639 | Msa0360570:intron | 45.0% |
! | GGACACAATTTTACGGTGGT+GGG | + | chr3_1:49992621-49992640 | Msa0360570:intron | 45.0% |
! | GACACAATTTTACGGTGGTG+GGG | + | chr3_1:49992622-49992641 | Msa0360570:intron | 45.0% |
GTGCCATGTTGAATTCCTCA+AGG | - | chr3_1:49993134-49993153 | None:intergenic | 45.0% | |
GAATTCAACATGGCACCTGA+TGG | + | chr3_1:49993138-49993157 | Msa0360570:CDS | 45.0% | |
GCACAGTCAAGAATACCATC+AGG | - | chr3_1:49993156-49993175 | None:intergenic | 45.0% | |
GCAAAACTTAGGATCAGCCA+TGG | + | chr3_1:49993174-49993193 | Msa0360570:CDS | 45.0% | |
! | GGTCCGTAGTATTGAGAGAT+TGG | - | chr3_1:49993334-49993353 | None:intergenic | 45.0% |
TCAATACTACGGACCAGTGA+AGG | + | chr3_1:49993339-49993358 | Msa0360570:intron | 45.0% | |
TGAACCATGCATGCACTTCA+TGG | + | chr3_1:49993537-49993556 | Msa0360570:intron | 45.0% | |
GATTCCATGAAGTGCATGCA+TGG | - | chr3_1:49993544-49993563 | None:intergenic | 45.0% | |
AAGCTATTCGGGAGAGCTTA+TGG | - | chr3_1:49993709-49993728 | None:intergenic | 45.0% | |
TTGGAGGTCTCCTGCAAATT+TGG | - | chr3_1:49993877-49993896 | None:intergenic | 45.0% | |
! | ATCTTGGTCTTCAATGGCTG+TGG | + | chr3_1:49993902-49993921 | Msa0360570:CDS | 45.0% |
! | TCTTGGTCTTCAATGGCTGT+GGG | + | chr3_1:49993903-49993922 | Msa0360570:CDS | 45.0% |
! | GGAATATGCGGGAGTTTGTT+AGG | + | chr3_1:49993927-49993946 | Msa0360570:CDS | 45.0% |
!! | ATATGCGGGAGTTTGTTAGG+GGG | + | chr3_1:49993930-49993949 | Msa0360570:CDS | 45.0% |
! | CTCCAGAATCTTCGATTTGC+TGG | - | chr3_1:49994219-49994238 | None:intergenic | 45.0% |
TCTGGAGAAAGGAGATTCCT+TGG | + | chr3_1:49994232-49994251 | Msa0360570:CDS | 45.0% | |
GAGATTCCTTGGCAACAAAG+TGG | + | chr3_1:49994243-49994262 | Msa0360570:CDS | 45.0% | |
ATGGAACCACTTTGTTGCCA+AGG | - | chr3_1:49994252-49994271 | None:intergenic | 45.0% | |
CAATATGAAATGCATCCCCC+TGG | + | chr3_1:49994511-49994530 | Msa0360570:intron | 45.0% | |
TGAAGCGACAGTGCTACATT+CGG | - | chr3_1:49994539-49994558 | None:intergenic | 45.0% | |
ATGTCCAACAGTGACACATG+CGG | + | chr3_1:49994576-49994595 | Msa0360570:intron | 45.0% | |
GCGAGGAAAAACCAAGACAT+AGG | - | chr3_1:49995051-49995070 | None:intergenic | 45.0% | |
!! | AAAGCTCGAAGCATCGTTCT+TGG | + | chr3_1:49995128-49995147 | Msa0360570:CDS | 45.0% |
!! | AAGCTCGAAGCATCGTTCTT+GGG | + | chr3_1:49995129-49995148 | Msa0360570:CDS | 45.0% |
! | GGTTGGTTAGGACTTATGCT+CGG | + | chr3_1:49995168-49995187 | Msa0360570:CDS | 45.0% |
! | GCGTCATATGCTTTAGGTGA+CGG | - | chr3_1:49995209-49995228 | None:intergenic | 45.0% |
CAGGTATGCTCATGTTGCAT+TGG | + | chr3_1:49995325-49995344 | Msa0360570:intron | 45.0% | |
AACCCTATCTGGTACACCAA+AGG | - | chr3_1:49995399-49995418 | None:intergenic | 45.0% | |
TGGTGTACCAGATAGGGTTA+TGG | + | chr3_1:49995400-49995419 | Msa0360570:CDS | 45.0% | |
!! | AAGAGCACCATAACCCTATC+TGG | - | chr3_1:49995410-49995429 | None:intergenic | 45.0% |
GATAGGGTTATGGTGCTCTT+TGG | + | chr3_1:49995410-49995429 | Msa0360570:CDS | 45.0% | |
! | TTTGGCTCAGCACTTGTTGA+TGG | + | chr3_1:49995428-49995447 | Msa0360570:CDS | 45.0% |
AAGCATGTGCATGGTACGAT+AGG | + | chr3_1:49995508-49995527 | Msa0360570:intron | 45.0% | |
CGGACTAAACCAAAACAACG+AGG | + | chr3_1:49995855-49995874 | Msa0360570:intron | 45.0% | |
CTATGTCCTCCAGGAATTGA+AGG | + | chr3_1:49996463-49996482 | Msa0360570:CDS | 45.0% | |
AATGTCCCTTCAATTCCTGG+AGG | - | chr3_1:49996472-49996491 | None:intergenic | 45.0% | |
! | ATAGGGTCTTTTGTAGGTGC+TGG | + | chr3_1:49996532-49996551 | Msa0360570:CDS | 45.0% |
!! | GATGCACCTGTTGCTTCTTT+TGG | - | chr3_1:49996667-49996686 | None:intergenic | 45.0% |
!!! | ATAATTTTATTTTGAATTTA+TGG | + | chr3_1:49992392-49992411 | Msa0360570:intron | 5.0% |
!!! | TTATTTATTTTTTGTATTTA+TGG | + | chr3_1:49994942-49994961 | Msa0360570:intron | 5.0% |
!!! | TATATCAATTTTATTTTAAA+GGG | - | chr3_1:49995763-49995782 | None:intergenic | 5.0% |
!!! | ATATATCAATTTTATTTTAA+AGG | - | chr3_1:49995764-49995783 | None:intergenic | 5.0% |
!!! | AAATTGATATATATATTTTA+TGG | + | chr3_1:49995772-49995791 | Msa0360570:intron | 5.0% |
GTAAGAGGGAGAGAGAAGGT+AGG | + | chr3_1:49990771-49990790 | Msa0360570:intron | 50.0% | |
GGAGAGAGAAGGTAGGGAAA+TGG | + | chr3_1:49990778-49990797 | Msa0360570:intron | 50.0% | |
GGTATACAAAAGTGGTCCGC+CGG | + | chr3_1:49990873-49990892 | Msa0360570:intron | 50.0% | |
TCAACTAAGTGGTTCACCGG+CGG | - | chr3_1:49990892-49990911 | None:intergenic | 50.0% | |
CCGGTGAACCACTTAGTTGA+TGG | + | chr3_1:49990892-49990911 | Msa0360570:intron | 50.0% | |
GTCACCACAGTAATCTCACG+TGG | + | chr3_1:49991078-49991097 | Msa0360570:intron | 50.0% | |
CTTGCCACGTGAGATTACTG+TGG | - | chr3_1:49991085-49991104 | None:intergenic | 50.0% | |
TGTTGATGCGATGATAGCCG+AGG | + | chr3_1:49993207-49993226 | Msa0360570:CDS | 50.0% | |
ACATTCCCTTCGACCTTCAC+TGG | - | chr3_1:49993355-49993374 | None:intergenic | 50.0% | |
TTGGTCAGGGCCAAATTTGC+AGG | + | chr3_1:49993864-49993883 | Msa0360570:intron | 50.0% | |
ATGGCTGTGGGAGGAATATG+CGG | + | chr3_1:49993915-49993934 | Msa0360570:CDS | 50.0% | |
AGTGCTACATTCGGTACCAG+GGG | - | chr3_1:49994530-49994549 | None:intergenic | 50.0% | |
CAGTGCTACATTCGGTACCA+GGG | - | chr3_1:49994531-49994550 | None:intergenic | 50.0% | |
ACAGTGCTACATTCGGTACC+AGG | - | chr3_1:49994532-49994551 | None:intergenic | 50.0% | |
TGTCCAACAGTGACACATGC+GGG | + | chr3_1:49994577-49994596 | Msa0360570:intron | 50.0% | |
CACACACACACATGAGGAGT+AGG | - | chr3_1:49994911-49994930 | None:intergenic | 50.0% | |
CACACACACACACACACATG+AGG | - | chr3_1:49994917-49994936 | None:intergenic | 50.0% | |
TGGAGGACAGACCTATGTCT+TGG | + | chr3_1:49995037-49995056 | Msa0360570:intron | 50.0% | |
!! | AGCTCGAAGCATCGTTCTTG+GGG | + | chr3_1:49995130-49995149 | Msa0360570:CDS | 50.0% |
! | GTACGCGTTGTTGGTTGGTT+AGG | + | chr3_1:49995156-49995175 | Msa0360570:CDS | 50.0% |
TGCAGATTGCCGTTGTGTCT+AGG | + | chr3_1:49995363-49995382 | Msa0360570:CDS | 50.0% | |
! | TCGCCTTTGGTGTACCAGAT+AGG | + | chr3_1:49995393-49995412 | Msa0360570:CDS | 50.0% |
! | CGCCTTTGGTGTACCAGATA+GGG | + | chr3_1:49995394-49995413 | Msa0360570:CDS | 50.0% |
TCTGGACAACTATGTCCTCC+AGG | + | chr3_1:49996454-49996473 | Msa0360570:CDS | 50.0% | |
!!! | GTCTTTTGTAGGTGCTGGCT+TGG | + | chr3_1:49996537-49996556 | Msa0360570:CDS | 50.0% |
AGGGGTAAGAGGGAGAGAGA+AGG | + | chr3_1:49990767-49990786 | Msa0360570:CDS | 55.0% | |
CTGTGCTCTCCCTTGTACCA+TGG | + | chr3_1:49993086-49993105 | Msa0360570:CDS | 55.0% | |
TACGGACCAGTGAAGGTCGA+AGG | + | chr3_1:49993346-49993365 | Msa0360570:intron | 55.0% | |
ACGGACCAGTGAAGGTCGAA+GGG | + | chr3_1:49993347-49993366 | Msa0360570:intron | 55.0% | |
TGGTCTTCAATGGCTGTGGG+AGG | + | chr3_1:49993906-49993925 | Msa0360570:CDS | 55.0% | |
TGGCTGTGGGAGGAATATGC+GGG | + | chr3_1:49993916-49993935 | Msa0360570:CDS | 55.0% | |
GTGCTACATTCGGTACCAGG+GGG | - | chr3_1:49994529-49994548 | None:intergenic | 55.0% | |
! | GCACTGTCGCTTCAGATCGA+TGG | + | chr3_1:49994545-49994564 | Msa0360570:intron | 55.0% |
TGGGAACAGTAATGTGGGCG+AGG | - | chr3_1:49995068-49995087 | None:intergenic | 55.0% | |
TTGGGGACAGTACGCGTTGT+TGG | + | chr3_1:49995147-49995166 | Msa0360570:CDS | 55.0% | |
GGACAGTACGCGTTGTTGGT+TGG | + | chr3_1:49995151-49995170 | Msa0360570:CDS | 55.0% | |
! | GTGCCCGCATGTGTCACTGT+TGG | - | chr3_1:49994583-49994602 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 49990723 | 49996901 | 49990723 | ID=Msa0360570;Name=Msa0360570 |
chr3_1 | mRNA | 49990723 | 49996901 | 49990723 | ID=Msa0360570-mRNA-1;Parent=Msa0360570;Name=Msa0360570-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.83|0.85|0.85|1|1|7|208|490 |
chr3_1 | exon | 49990723 | 49990788 | 49990723 | ID=Msa0360570-mRNA-1:exon:8820;Parent=Msa0360570-mRNA-1 |
chr3_1 | exon | 49991940 | 49992067 | 49991940 | ID=Msa0360570-mRNA-1:exon:8821;Parent=Msa0360570-mRNA-1 |
chr3_1 | exon | 49993024 | 49993245 | 49993024 | ID=Msa0360570-mRNA-1:exon:8822;Parent=Msa0360570-mRNA-1 |
chr3_1 | exon | 49993872 | 49994330 | 49993872 | ID=Msa0360570-mRNA-1:exon:8823;Parent=Msa0360570-mRNA-1 |
chr3_1 | exon | 49995047 | 49995244 | 49995047 | ID=Msa0360570-mRNA-1:exon:8824;Parent=Msa0360570-mRNA-1 |
chr3_1 | exon | 49995328 | 49995465 | 49995328 | ID=Msa0360570-mRNA-1:exon:8825;Parent=Msa0360570-mRNA-1 |
chr3_1 | exon | 49996432 | 49996901 | 49996432 | ID=Msa0360570-mRNA-1:exon:8826;Parent=Msa0360570-mRNA-1 |
chr3_1 | CDS | 49990723 | 49990788 | 49990723 | ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1 |
chr3_1 | CDS | 49991940 | 49992067 | 49991940 | ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1 |
chr3_1 | CDS | 49993024 | 49993245 | 49993024 | ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1 |
chr3_1 | CDS | 49993872 | 49994330 | 49993872 | ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1 |
chr3_1 | CDS | 49995047 | 49995244 | 49995047 | ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1 |
chr3_1 | CDS | 49995328 | 49995465 | 49995328 | ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1 |
chr3_1 | CDS | 49996432 | 49996693 | 49996432 | ID=Msa0360570-mRNA-1:cds;Parent=Msa0360570-mRNA-1 |
chr3_1 | three_prime_UTR | 49996694 | 49996901 | 49996694 | ID=Msa0360570-mRNA-1:three_prime_utr;Parent=Msa0360570-mRNA-1 |
Gene Sequence |
Protein sequence |