AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1382790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382790 MtrunA17_Chr3g0130561 99.539 217 1 0 1 217 1 217 1.56e-150 417
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382790 AT5G09260.1 78.082 219 43 3 1 217 1 216 3.39e-115 327
Msa1382790 AT5G63880.1 73.636 220 54 2 1 217 1 219 2.87e-110 315
Msa1382790 AT5G63880.2 66.393 244 54 3 1 217 1 243 1.48e-104 301

Find 63 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAAGATGAGAATTGAAAT+TGG 0.195549 tig0020524:-60306 None:intergenic
AGAAGATGAAGAGGAGATTT+TGG 0.201044 tig0020524:+62107 Msa1382790:CDS
GGCTGTCTTTGAAAGTTTAA+AGG 0.219717 tig0020524:+61717 Msa1382790:CDS
CTGTTGCCTCATGCAGTTAC+TGG 0.256201 tig0020524:+63941 Msa1382790:three_prime_UTR
ACTGAGCAAGTTTGCGTCTC+TGG 0.262924 tig0020524:-60435 None:intergenic
GTAAAATTGTTTCACTCCTT+TGG 0.289606 tig0020524:-64084 None:intergenic
AATGTTTATCTCACTTTGTA+TGG 0.301517 tig0020524:-61761 None:intergenic
AAATATGTGAGGGACAAATA+AGG 0.309245 tig0020524:-60199 None:intergenic
TGAAGATGTTCAGAAACTTA+TGG 0.330454 tig0020524:+61783 Msa1382790:CDS
GGAACTGTGCTAGGAGCTTC+AGG 0.332559 tig0020524:-63608 None:intergenic
AAAAGATGAGAATTGAAATT+GGG 0.381225 tig0020524:-60305 None:intergenic
TTTGGCAGAGTTTGAGAACT+TGG 0.390056 tig0020524:+62125 Msa1382790:CDS
CTTTCCATTTCTATTTGATA+AGG 0.391434 tig0020524:+64028 Msa1382790:three_prime_UTR
GTCGTTTCCAACAGCAGTTT+CGG 0.399899 tig0020524:-60254 None:intergenic
GAAGAAAGATAGGGCCTTGT+TGG 0.403435 tig0020524:+61233 Msa1382790:CDS
AAGGAAATTAATGCAATACT+TGG 0.407288 tig0020524:+62069 Msa1382790:intron
CAAAGCAGTTAACTGTGTTT+CGG 0.412465 tig0020524:-63866 None:intergenic
CGATCTACGTCCGTTACCTT+AGG 0.414802 tig0020524:-60391 None:intergenic
GCATCACTCGTAGTGGTAAC+TGG 0.415859 tig0020524:-63680 None:intergenic
GAAACCTTATCAAATAGAAA+TGG 0.429916 tig0020524:-64032 None:intergenic
ATGCACACACTATTTATTTG+AGG 0.444815 tig0020524:+64178 Msa1382790:three_prime_UTR
AATATGTGAGGGACAAATAA+GGG 0.468508 tig0020524:-60198 None:intergenic
AGGAAATTAATGCAATACTT+GGG 0.470100 tig0020524:+62070 Msa1382790:intron
TTGCTCAACATTTATAAGCC+AGG 0.478759 tig0020524:-61304 None:intergenic
CTGAGCAAGTTTGCGTCTCT+GGG 0.482606 tig0020524:-60434 None:intergenic
GAGGTATAATGACTTGAGAA+TGG 0.487312 tig0020524:+64150 Msa1382790:three_prime_UTR
GTCTTTGAAAGTTTAAAGGC+TGG 0.504167 tig0020524:+61721 Msa1382790:CDS
AACAGTTATGGAGGAACCAT+TGG 0.511723 tig0020524:+63823 Msa1382790:intron
GCAAACCAAAGTGTAGCATC+TGG 0.514076 tig0020524:+63888 Msa1382790:three_prime_UTR
ATTGTTATAAATGTATAATG+AGG 0.515076 tig0020524:+64131 Msa1382790:three_prime_UTR
CGTAGTGGTAACTGGTGCCT+TGG 0.515200 tig0020524:-63672 None:intergenic
ATTTACAAATCGAAATCGAT+GGG 0.515535 tig0020524:+60349 Msa1382790:exon
TTCGTGAAAAGAAGAAAGAT+AGG 0.520278 tig0020524:+61223 Msa1382790:CDS
GGGTATTTGTGTAAAGTGAC+AGG 0.521083 tig0020524:+60072 None:intergenic
TGACAAGGTTGACGAAAAGT+TGG 0.521454 tig0020524:+63631 Msa1382790:CDS
ACTTGCTCAGTATCAACAAA+AGG 0.527227 tig0020524:+60447 Msa1382790:CDS
ATTATCAGCAGAAGATGAAG+AGG 0.529769 tig0020524:+62098 Msa1382790:CDS
AAACAGACCGAAACTGCTGT+TGG 0.545151 tig0020524:+60247 Msa1382790:five_prime_UTR
GTGGTAACTGGTGCCTTGGT+TGG 0.551235 tig0020524:-63668 None:intergenic
AGTGACAGGAAACAACTCTC+TGG 0.553316 tig0020524:+60086 Msa1382790:five_prime_UTR
AGAAAGAGAGAAATATGTGA+GGG 0.553808 tig0020524:-60209 None:intergenic
AATTTACAAATCGAAATCGA+TGG 0.565183 tig0020524:+60348 Msa1382790:exon
GAAGACCAGATGCTACACTT+TGG 0.566982 tig0020524:-63893 None:intergenic
AATGTTCTTCAAGCTGCCAA+TGG 0.568542 tig0020524:-63839 None:intergenic
TATTGAAGCAAGTTGACACC+TGG 0.572175 tig0020524:+61286 Msa1382790:CDS
ACCTTGTCAGGAACTGTGCT+AGG 0.576734 tig0020524:-63617 None:intergenic
GGAAATTAATGCAATACTTG+GGG 0.576994 tig0020524:+62071 Msa1382790:intron
TATATTCGTGAAGAAACCTA+AGG 0.587486 tig0020524:+60375 Msa1382790:CDS
AAGAAAGAGAGAAATATGTG+AGG 0.591113 tig0020524:-60210 None:intergenic
TCGTGAAAAGAAGAAAGATA+GGG 0.592708 tig0020524:+61224 Msa1382790:CDS
TTTCTTCTTTAACGCCAACA+AGG 0.596260 tig0020524:-61247 None:intergenic
TGAACTGACAAGCAAGCAGA+AGG 0.603490 tig0020524:+61696 Msa1382790:CDS
TTCGATTTGTAAATTCGATG+AGG 0.607402 tig0020524:-60340 None:intergenic
TCCTAGCACAGTTCCTGACA+AGG 0.608316 tig0020524:+63616 Msa1382790:CDS
TGAGGCAACAGAATTGATAG+TGG 0.610237 tig0020524:-63929 None:intergenic
GTTTGAGAACTTGGAAACCC+AGG 0.622553 tig0020524:+62134 Msa1382790:CDS
CGTGAAGAAACCTAAGGTAA+CGG 0.639718 tig0020524:+60381 Msa1382790:CDS
TACTTCAGCATCACTCGTAG+TGG 0.642788 tig0020524:-63687 None:intergenic
AAAACTCCAGTAACTGCATG+AGG 0.644252 tig0020524:-63947 None:intergenic
CCTTCTTGATGTTCCAACCA+AGG 0.644842 tig0020524:+63655 Msa1382790:CDS
CCTTGGTTGGAACATCAAGA+AGG 0.649857 tig0020524:-63655 None:intergenic
TGATGTTGCAACAGTTATGG+AGG 0.695628 tig0020524:+63814 Msa1382790:intron
TTTACAAATCGAAATCGATG+GGG 0.717126 tig0020524:+60350 Msa1382790:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTGAAATTTTTCAAT+CGG - tig0020524:62695-62714 None:intergenic 10.0%
!!! CTTTTTTATTTTATTTTCTT+TGG - tig0020524:63770-63789 None:intergenic 10.0%
!!! TTTTCTGATAATTACTTATT+AGG + tig0020524:60531-60550 Msa1382790:intron 15.0%
!! TTTCTGATAATTACTTATTA+GGG + tig0020524:60532-60551 Msa1382790:intron 15.0%
!!! ACATTTTGTTACTAAATAAA+TGG - tig0020524:60862-60881 None:intergenic 15.0%
!! TTTATATTCATGTTAAAAGA+GGG - tig0020524:61620-61639 None:intergenic 15.0%
!! ATTTATATTCATGTTAAAAG+AGG - tig0020524:61621-61640 None:intergenic 15.0%
!!! CTATTTTTACAATTTTCAAT+CGG - tig0020524:62639-62658 None:intergenic 15.0%
!! AAATTAGGAATATGATATAA+AGG + tig0020524:63487-63506 Msa1382790:intron 15.0%
!! ATTGTTATAAATGTATAATG+AGG + tig0020524:64131-64150 Msa1382790:three_prime_UTR 15.0%
!!! TTTTTTAGTTTTTTCTGTTG+AGG - tig0020524:60285-60304 None:intergenic 20.0%
!! AAAAGATGAGAATTGAAATT+GGG - tig0020524:60308-60327 None:intergenic 20.0%
!! AATAACAGATATGAAATTGA+GGG - tig0020524:60488-60507 None:intergenic 20.0%
!! ATGGACTTATATGTATAAAT+AGG + tig0020524:60668-60687 Msa1382790:intron 20.0%
!! TCAAGAACTGTAATAAATAT+CGG + tig0020524:60782-60801 Msa1382790:intron 20.0%
!!! TAATATAGCGTTTTAGATTT+TGG + tig0020524:61073-61092 Msa1382790:intron 20.0%
!!! AAAAGTCTACTTATTTGTTT+TGG + tig0020524:61374-61393 Msa1382790:intron 20.0%
!!! TAAATGTAAGTATCTCTTTT+AGG - tig0020524:61651-61670 None:intergenic 20.0%
!!! GATACTTACATTTATTTTGT+TGG + tig0020524:61657-61676 Msa1382790:intron 20.0%
!! TTTAATCATAGTATATGGAA+AGG + tig0020524:62234-62253 Msa1382790:intron 20.0%
!! AACCTTTAGATTAAAATAGA+TGG + tig0020524:62376-62395 Msa1382790:intron 20.0%
!! TAACAATGAAAATAAAGATC+TGG - tig0020524:62528-62547 None:intergenic 20.0%
!! TAACATTAAAACAAGATGAA+GGG + tig0020524:62608-62627 Msa1382790:intron 20.0%
!! TAAAATCAATTCAACACTAA+CGG + tig0020524:62723-62742 Msa1382790:intron 20.0%
!! TTCAAATTTGTGATTTCAAT+CGG - tig0020524:62753-62772 None:intergenic 20.0%
!! AAACATTGAATTCAATTGTT+TGG + tig0020524:63404-63423 Msa1382790:intron 20.0%
!! GAGGTTATAAATTCAAAATT+AGG + tig0020524:63472-63491 Msa1382790:intron 20.0%
!!! GAAGTATCTATAAAAAGAAA+AGG + tig0020524:63704-63723 Msa1382790:CDS 20.0%
! CAAAAGATGAGAATTGAAAT+TGG - tig0020524:60309-60328 None:intergenic 25.0%
! AATTTACAAATCGAAATCGA+TGG + tig0020524:60348-60367 Msa1382790:exon 25.0%
! ATTTACAAATCGAAATCGAT+GGG + tig0020524:60349-60368 Msa1382790:exon 25.0%
! GAATAACAGATATGAAATTG+AGG - tig0020524:60489-60508 None:intergenic 25.0%
! TGAACAATTGAACTAAAGTT+TGG + tig0020524:60566-60585 Msa1382790:intron 25.0%
!!! CACTTTTTTGGTTATTAACT+GGG + tig0020524:61049-61068 Msa1382790:intron 25.0%
!!! TCTACTTATTTGTTTTGGTT+TGG + tig0020524:61379-61398 Msa1382790:intron 25.0%
! AATGTTTATCTCACTTTGTA+TGG - tig0020524:61764-61783 None:intergenic 25.0%
!!! CATGATTTTGCTTAATTTGA+AGG + tig0020524:62050-62069 Msa1382790:intron 25.0%
! AAGGAAATTAATGCAATACT+TGG + tig0020524:62069-62088 Msa1382790:intron 25.0%
! AGGAAATTAATGCAATACTT+GGG + tig0020524:62070-62089 Msa1382790:intron 25.0%
!! TATGAATGGATTTATAAGTC+AGG - tig0020524:62191-62210 None:intergenic 25.0%
!!! AGCCATCTATTTTAATCTAA+AGG - tig0020524:62381-62400 None:intergenic 25.0%
!! AATTTTATTGGGAGTGAAAA+AGG - tig0020524:62437-62456 None:intergenic 25.0%
! GTAACATTAAAACAAGATGA+AGG + tig0020524:62607-62626 Msa1382790:intron 25.0%
! AACATTAAAACAAGATGAAG+GGG + tig0020524:62609-62628 Msa1382790:intron 25.0%
! ATTGTAAAAATAGTGCAACT+AGG + tig0020524:62646-62665 Msa1382790:intron 25.0%
!! ATTTGAAATTCATTCGAAAC+AGG + tig0020524:62766-62785 Msa1382790:intron 25.0%
!! TTATGTTTGAGATGTGAATT+GGG - tig0020524:62832-62851 None:intergenic 25.0%
!! TTTATGTTTGAGATGTGAAT+TGG - tig0020524:62833-62852 None:intergenic 25.0%
! AACATAAAAAGACGTTGTTT+AGG + tig0020524:62845-62864 Msa1382790:intron 25.0%
! ACCATCAGATCAAAAATAAA+CGG - tig0020524:63022-63041 None:intergenic 25.0%
! ATGACATCTAGCATAAAAAA+TGG + tig0020524:63328-63347 Msa1382790:intron 25.0%
! ATTGAATTCAATGTTTCGAT+TGG - tig0020524:63400-63419 None:intergenic 25.0%
! CTTTCCATTTCTATTTGATA+AGG + tig0020524:64028-64047 Msa1382790:three_prime_UTR 25.0%
! GAAACCTTATCAAATAGAAA+TGG - tig0020524:64035-64054 None:intergenic 25.0%
! AAAAAACAATAGATGACCAA+AGG + tig0020524:64068-64087 Msa1382790:three_prime_UTR 25.0%
!! CAATTTTACTGAACTGTTTT+TGG + tig0020524:64098-64117 Msa1382790:three_prime_UTR 25.0%
AATATGTGAGGGACAAATAA+GGG - tig0020524:60201-60220 None:intergenic 30.0%
AAATATGTGAGGGACAAATA+AGG - tig0020524:60202-60221 None:intergenic 30.0%
AGAAAGAGAGAAATATGTGA+GGG - tig0020524:60212-60231 None:intergenic 30.0%
AAGAAAGAGAGAAATATGTG+AGG - tig0020524:60213-60232 None:intergenic 30.0%
!!! AGTTTTTTCTGTTGAGGTTT+TGG - tig0020524:60279-60298 None:intergenic 30.0%
! TTCGATTTGTAAATTCGATG+AGG - tig0020524:60343-60362 None:intergenic 30.0%
TTTACAAATCGAAATCGATG+GGG + tig0020524:60350-60369 Msa1382790:exon 30.0%
TATATTCGTGAAGAAACCTA+AGG + tig0020524:60375-60394 Msa1382790:CDS 30.0%
!! GAAATTGAGGGTATTGAAAA+AGG - tig0020524:60476-60495 None:intergenic 30.0%
! CACTACTTCTCATTTTCATA+TGG + tig0020524:60649-60668 Msa1382790:intron 30.0%
AACAACAGTAATCAATACAG+TGG - tig0020524:60695-60714 None:intergenic 30.0%
! TAACTCAGTGTTGTTAATCT+CGG - tig0020524:60962-60981 None:intergenic 30.0%
!!! GCACTTTTTTGGTTATTAAC+TGG + tig0020524:61048-61067 Msa1382790:intron 30.0%
GAAAGGAAAAAACTCAAGTA+AGG - tig0020524:61138-61157 None:intergenic 30.0%
GGAAAATAAAGAACACAGAA+AGG - tig0020524:61155-61174 None:intergenic 30.0%
TTCGTGAAAAGAAGAAAGAT+AGG + tig0020524:61223-61242 Msa1382790:CDS 30.0%
TCGTGAAAAGAAGAAAGATA+GGG + tig0020524:61224-61243 Msa1382790:CDS 30.0%
AGAGAGTGAGTCATTATTAT+TGG - tig0020524:61406-61425 None:intergenic 30.0%
TACCTGTTAGTATCTTTCTA+TGG + tig0020524:61425-61444 Msa1382790:intron 30.0%
TGAAGATGTTCAGAAACTTA+TGG + tig0020524:61783-61802 Msa1382790:CDS 30.0%
AAGTTCAATGAATCTAGATG+TGG - tig0020524:61894-61913 None:intergenic 30.0%
! ATTGAGATTTTTGTTCCGTT+GGG + tig0020524:61965-61984 Msa1382790:intron 30.0%
CAAATATATTAACAGCCCAA+CGG - tig0020524:61983-62002 None:intergenic 30.0%
GGAAATTAATGCAATACTTG+GGG + tig0020524:62071-62090 Msa1382790:intron 30.0%
!! CTGGCTTTAATCATAGTATA+TGG + tig0020524:62229-62248 Msa1382790:intron 30.0%
!! GAAGGCGTGAAAATTTTATT+GGG - tig0020524:62448-62467 None:intergenic 30.0%
!! AGAAGGCGTGAAAATTTTAT+TGG - tig0020524:62449-62468 None:intergenic 30.0%
AAAGATCTGGTCATTAACAT+TGG - tig0020524:62515-62534 None:intergenic 30.0%
! TATGTTTGAGATGTGAATTG+GGG - tig0020524:62831-62850 None:intergenic 30.0%
! TAATGGAGGTTCTTTATTTG+TGG + tig0020524:63249-63268 Msa1382790:intron 30.0%
! AATGGAGGTTCTTTATTTGT+GGG + tig0020524:63250-63269 Msa1382790:intron 30.0%
CATGCAATAAGAATTTATGG+GGG - tig0020524:63538-63557 None:intergenic 30.0%
CCATGCAATAAGAATTTATG+GGG - tig0020524:63539-63558 None:intergenic 30.0%
GCCATGCAATAAGAATTTAT+GGG - tig0020524:63540-63559 None:intergenic 30.0%
TGCCATGCAATAAGAATTTA+TGG - tig0020524:63541-63560 None:intergenic 30.0%
!! TTTATTTTCTTTGGGAGAGA+GGG - tig0020524:63761-63780 None:intergenic 30.0%
!!! TTTTATTTTCTTTGGGAGAG+AGG - tig0020524:63762-63781 None:intergenic 30.0%
TATAGAAGTTGACTAACTGA+TGG + tig0020524:63790-63809 Msa1382790:intron 30.0%
GTAAAATTGTTTCACTCCTT+TGG - tig0020524:64087-64106 None:intergenic 30.0%
ATGCACACACTATTTATTTG+AGG + tig0020524:64178-64197 Msa1382790:three_prime_UTR 30.0%
ACTTGCTCAGTATCAACAAA+AGG + tig0020524:60447-60466 Msa1382790:CDS 35.0%
CTAAATTTCCTCTATGCTAC+AGG - tig0020524:60814-60833 None:intergenic 35.0%
GGCATATCGTAGAACAATAT+AGG - tig0020524:60841-60860 None:intergenic 35.0%
ACACCAGATACAATCAAAGA+CGG - tig0020524:60993-61012 None:intergenic 35.0%
CTTTGATTGTATCTGGTGTA+TGG + tig0020524:60994-61013 Msa1382790:intron 35.0%
TGTATCTGGTGTATGGAAAA+TGG + tig0020524:61001-61020 Msa1382790:intron 35.0%
!! TGTATGGAAAATGGATTAGC+TGG + tig0020524:61010-61029 Msa1382790:intron 35.0%
!!! TGGTGATGATTGCACTTTTT+TGG + tig0020524:61037-61056 Msa1382790:intron 35.0%
TTTCTTCTTTAACGCCAACA+AGG - tig0020524:61250-61269 None:intergenic 35.0%
TTGCTCAACATTTATAAGCC+AGG - tig0020524:61307-61326 None:intergenic 35.0%
AGCCATAGAAAGATACTAAC+AGG - tig0020524:61430-61449 None:intergenic 35.0%
TGCTAACAGGTAGAGATTAT+CGG - tig0020524:61499-61518 None:intergenic 35.0%
TACCTGTTAGCATCTTTCTA+TGG + tig0020524:61507-61526 Msa1382790:intron 35.0%
ATCTCTTCTGAACAGGATAT+CGG - tig0020524:61579-61598 None:intergenic 35.0%
CTCAATTATCTCTTCTGAAC+AGG - tig0020524:61586-61605 None:intergenic 35.0%
! GGCTGTCTTTGAAAGTTTAA+AGG + tig0020524:61717-61736 Msa1382790:CDS 35.0%
! GTCTTTGAAAGTTTAAAGGC+TGG + tig0020524:61721-61740 Msa1382790:CDS 35.0%
! TTGATAAGCTTTTGCTTCAG+CGG - tig0020524:61815-61834 None:intergenic 35.0%
! TGAACTTGAGTGTACCTTTT+TGG + tig0020524:61907-61926 Msa1382790:intron 35.0%
! GAACTTGAGTGTACCTTTTT+GGG + tig0020524:61908-61927 Msa1382790:intron 35.0%
! AACTTGAGTGTACCTTTTTG+GGG + tig0020524:61909-61928 Msa1382790:intron 35.0%
! GATTGAGATTTTTGTTCCGT+TGG + tig0020524:61964-61983 Msa1382790:intron 35.0%
CGTTGGGCTGTTAATATATT+TGG + tig0020524:61981-62000 Msa1382790:intron 35.0%
! AATTCTCATCTACTTGCTGA+TGG + tig0020524:62023-62042 Msa1382790:intron 35.0%
ATTATCAGCAGAAGATGAAG+AGG + tig0020524:62098-62117 Msa1382790:CDS 35.0%
! AGAAGATGAAGAGGAGATTT+TGG + tig0020524:62107-62126 Msa1382790:CDS 35.0%
ACTGAAAAATCCATGTACCT+GGG - tig0020524:62154-62173 None:intergenic 35.0%
AACTGAAAAATCCATGTACC+TGG - tig0020524:62155-62174 None:intergenic 35.0%
ACAGCTGGAACAAATATGAA+TGG - tig0020524:62205-62224 None:intergenic 35.0%
AAAGCTGCAGAAAATCTGAA+TGG + tig0020524:62936-62955 Msa1382790:intron 35.0%
AAGCTGCAGAAAATCTGAAT+GGG + tig0020524:62937-62956 Msa1382790:intron 35.0%
!!! GCCGTTTATTTTTGATCTGA+TGG + tig0020524:63018-63037 Msa1382790:intron 35.0%
TATCAGCCGAGACTAATTAA+TGG + tig0020524:63232-63251 Msa1382790:intron 35.0%
! GAACCTCCATTAATTAGTCT+CGG - tig0020524:63241-63260 None:intergenic 35.0%
ACTCATACCACAAGTAACTT+GGG - tig0020524:63308-63327 None:intergenic 35.0%
TACTCATACCACAAGTAACT+TGG - tig0020524:63309-63328 None:intergenic 35.0%
AACATTGCTTAGAGAAGAGA+TGG - tig0020524:63431-63450 None:intergenic 35.0%
CAATAAGAATTTATGGGGGA+AGG - tig0020524:63534-63553 None:intergenic 35.0%
CCCCATAAATTCTTATTGCA+TGG + tig0020524:63536-63555 Msa1382790:intron 35.0%
CAAAGCAGTTAACTGTGTTT+CGG - tig0020524:63869-63888 None:intergenic 35.0%
GAGGTATAATGACTTGAGAA+TGG + tig0020524:64150-64169 Msa1382790:three_prime_UTR 35.0%
CGAAGAAACCAAAAAGCAGT+GGG + tig0020524:60118-60137 Msa1382790:five_prime_UTR 40.0%
GAAGAAACCAAAAAGCAGTG+GGG + tig0020524:60119-60138 Msa1382790:five_prime_UTR 40.0%
CGTGAAGAAACCTAAGGTAA+CGG + tig0020524:60381-60400 Msa1382790:CDS 40.0%
TTTGACGTGCACAATGAGAA+TGG - tig0020524:60511-60530 None:intergenic 40.0%
TCTATGCTACAGTGCTATAG+AGG - tig0020524:60907-60926 None:intergenic 40.0%
TCTATAGCACTGTAGCATAG+AGG + tig0020524:60906-60925 Msa1382790:intron 40.0%
AGACCGTCTTTGATTGTATC+TGG + tig0020524:60987-61006 Msa1382790:intron 40.0%
!! AAAATGGATTAGCTGGACGT+TGG + tig0020524:61017-61036 Msa1382790:intron 40.0%
CTTCAATAACAGCATCAAGC+TGG - tig0020524:61176-61195 None:intergenic 40.0%
! TATTGAAGCAAGTTGACACC+TGG + tig0020524:61286-61305 Msa1382790:CDS 40.0%
CAGGTAGAGATTATCGGAAA+GGG - tig0020524:61493-61512 None:intergenic 40.0%
ACAGGTAGAGATTATCGGAA+AGG - tig0020524:61494-61513 None:intergenic 40.0%
AGCCATAGAAAGATGCTAAC+AGG - tig0020524:61512-61531 None:intergenic 40.0%
ACTCAATGGCTCAATAGACA+AGG - tig0020524:61545-61564 None:intergenic 40.0%
CGGAAAGGGAAAATACTCAA+TGG - tig0020524:61559-61578 None:intergenic 40.0%
TCTGAACAGGATATCGGAAA+GGG - tig0020524:61573-61592 None:intergenic 40.0%
TTCTGAACAGGATATCGGAA+AGG - tig0020524:61574-61593 None:intergenic 40.0%
TTTCAGAAGCAGCAAGAGTA+AGG - tig0020524:61863-61882 None:intergenic 40.0%
! ACTTGAGTGTACCTTTTTGG+GGG + tig0020524:61910-61929 Msa1382790:intron 40.0%
!! GTTAGGCATTGAAGTTGTAC+TGG + tig0020524:61938-61957 Msa1382790:intron 40.0%
TTTGGCAGAGTTTGAGAACT+TGG + tig0020524:62125-62144 Msa1382790:CDS 40.0%
ATTTGTTCCAGCTGTACTAC+TGG + tig0020524:62210-62229 Msa1382790:intron 40.0%
ATTAAAGCCAGTAGTACAGC+TGG - tig0020524:62220-62239 None:intergenic 40.0%
GATCTGGTCATTAACATTGG+TGG - tig0020524:62512-62531 None:intergenic 40.0%
GCAGAAAATCTGAATGGGTA+TGG + tig0020524:62942-62961 Msa1382790:intron 40.0%
GAAAATCTGAATGGGTATGG+TGG + tig0020524:62945-62964 Msa1382790:intron 40.0%
!! TATGGTGGATAGACTAAGTG+AGG + tig0020524:62960-62979 Msa1382790:intron 40.0%
ATAGACTAAGTGAGGCACAT+GGG + tig0020524:62968-62987 Msa1382790:intron 40.0%
TACCACAAGTAACTTGGGTT+CGG - tig0020524:63303-63322 None:intergenic 40.0%
GAGCTAGTGATTGACTATAG+AGG + tig0020524:63453-63472 Msa1382790:intron 40.0%
! AACTTTTCGTCAACCTTGTC+AGG - tig0020524:63632-63651 None:intergenic 40.0%
TGACAAGGTTGACGAAAAGT+TGG + tig0020524:63631-63650 Msa1382790:CDS 40.0%
TGATGTTGCAACAGTTATGG+AGG + tig0020524:63814-63833 Msa1382790:intron 40.0%
AACAGTTATGGAGGAACCAT+TGG + tig0020524:63823-63842 Msa1382790:intron 40.0%
AATGTTCTTCAAGCTGCCAA+TGG - tig0020524:63842-63861 None:intergenic 40.0%
TGAGGCAACAGAATTGATAG+TGG - tig0020524:63932-63951 None:intergenic 40.0%
AAAACTCCAGTAACTGCATG+AGG - tig0020524:63950-63969 None:intergenic 40.0%
!!! GCAGTTACTGGAGTTTTGAA+TGG + tig0020524:63953-63972 Msa1382790:three_prime_UTR 40.0%
AGTGACAGGAAACAACTCTC+TGG + tig0020524:60086-60105 Msa1382790:five_prime_UTR 45.0%
!!! CTGCTTTTTGGTTTCTTCGC+TGG - tig0020524:60117-60136 None:intergenic 45.0%
GCGAAGAAACCAAAAAGCAG+TGG + tig0020524:60117-60136 Msa1382790:five_prime_UTR 45.0%
!! CTATGAACCCCACTGCTTTT+TGG - tig0020524:60129-60148 None:intergenic 45.0%
CAAAAAGCAGTGGGGTTCAT+AGG + tig0020524:60127-60146 Msa1382790:five_prime_UTR 45.0%
AAACAGACCGAAACTGCTGT+TGG + tig0020524:60247-60266 Msa1382790:five_prime_UTR 45.0%
GTCGTTTCCAACAGCAGTTT+CGG - tig0020524:60257-60276 None:intergenic 45.0%
! GAAGAAAGATAGGGCCTTGT+TGG + tig0020524:61233-61252 Msa1382790:CDS 45.0%
!! CGGAAAGGGAAAGTACTCAA+TGG - tig0020524:61479-61498 None:intergenic 45.0%
TGAACTGACAAGCAAGCAGA+AGG + tig0020524:61696-61715 Msa1382790:CDS 45.0%
GTTTGAGAACTTGGAAACCC+AGG + tig0020524:62134-62153 Msa1382790:CDS 45.0%
AACTTGGAAACCCAGGTACA+TGG + tig0020524:62141-62160 Msa1382790:intron 45.0%
GAATTGGAGGTTGGAGAAGA+AGG - tig0020524:62466-62485 None:intergenic 45.0%
TGAAAATGGGGGAGTGGAAT+TGG - tig0020524:62482-62501 None:intergenic 45.0%
!! TGGTGGTGGTGGTTGAAAAT+GGG - tig0020524:62495-62514 None:intergenic 45.0%
!! TTGGTGGTGGTGGTTGAAAA+TGG - tig0020524:62496-62515 None:intergenic 45.0%
!! GTCATTAACATTGGTGGTGG+TGG - tig0020524:62506-62525 None:intergenic 45.0%
CTGGTCATTAACATTGGTGG+TGG - tig0020524:62509-62528 None:intergenic 45.0%
GATAGACTAAGTGAGGCACA+TGG + tig0020524:62967-62986 Msa1382790:intron 45.0%
! GTGTCATTCCTCTAGCAACA+AGG - tig0020524:63208-63227 None:intergenic 45.0%
CAGCCGAGACTAATTAATGG+AGG + tig0020524:63235-63254 Msa1382790:intron 45.0%
GATCTTCGACTGCAAACTGT+TGG - tig0020524:63586-63605 None:intergenic 45.0%
CCTTGGTTGGAACATCAAGA+AGG - tig0020524:63658-63677 None:intergenic 45.0%
CCTTCTTGATGTTCCAACCA+AGG + tig0020524:63655-63674 Msa1382790:CDS 45.0%
TACTTCAGCATCACTCGTAG+TGG - tig0020524:63690-63709 None:intergenic 45.0%
!! TTTTCTTTGGGAGAGAGGGA+CGG - tig0020524:63757-63776 None:intergenic 45.0%
GGCTGATGTTGCAACAGTTA+TGG + tig0020524:63811-63830 Msa1382790:intron 45.0%
GCAAACCAAAGTGTAGCATC+TGG + tig0020524:63888-63907 Msa1382790:three_prime_UTR 45.0%
GAAGACCAGATGCTACACTT+TGG - tig0020524:63896-63915 None:intergenic 45.0%
!! ATATATATATATATATATAG+AGG - tig0020524:62304-62323 None:intergenic 5.0%
!!! TTTTTTATTTTATTTTCTTT+GGG - tig0020524:63769-63788 None:intergenic 5.0%
CGATCTACGTCCGTTACCTT+AGG - tig0020524:60394-60413 None:intergenic 50.0%
CTGAGCAAGTTTGCGTCTCT+GGG - tig0020524:60437-60456 None:intergenic 50.0%
ACTGAGCAAGTTTGCGTCTC+TGG - tig0020524:60438-60457 None:intergenic 50.0%
!! GAGTGTACCTTTTTGGGGGA+CGG + tig0020524:61914-61933 Msa1382790:intron 50.0%
!! AGTGTACCTTTTTGGGGGAC+GGG + tig0020524:61915-61934 Msa1382790:intron 50.0%
AAATGGGGGAGTGGAATTGG+AGG - tig0020524:62479-62498 None:intergenic 50.0%
!! GTGGTGGTGGTTGAAAATGG+GGG - tig0020524:62493-62512 None:intergenic 50.0%
!! GGTGGTGGTGGTTGAAAATG+GGG - tig0020524:62494-62513 None:intergenic 50.0%
GAGAGAGACCTTGTTGCTAG+AGG + tig0020524:63197-63216 Msa1382790:intron 50.0%
CACCGAACCCAAGTTACTTG+TGG + tig0020524:63298-63317 Msa1382790:intron 50.0%
AGCTGCATAATGTGACTGCC+TGG + tig0020524:63363-63382 Msa1382790:intron 50.0%
CGATTGGCAGCATAACTACC+AGG - tig0020524:63384-63403 None:intergenic 50.0%
TCCTAGCACAGTTCCTGACA+AGG + tig0020524:63616-63635 Msa1382790:CDS 50.0%
ACCTTGTCAGGAACTGTGCT+AGG - tig0020524:63620-63639 None:intergenic 50.0%
GCATCACTCGTAGTGGTAAC+TGG - tig0020524:63683-63702 None:intergenic 50.0%
! TTTCTTTGGGAGAGAGGGAC+GGG - tig0020524:63756-63775 None:intergenic 50.0%
CTGTTGCCTCATGCAGTTAC+TGG + tig0020524:63941-63960 Msa1382790:three_prime_UTR 50.0%
GGCTGTAGCCTGTAGCATAG+AGG + tig0020524:60803-60822 Msa1382790:intron 55.0%
! GTGCTATAGAGGTGCAGCAG+CGG - tig0020524:60896-60915 None:intergenic 55.0%
!! GTGTACCTTTTTGGGGGACG+GGG + tig0020524:61916-61935 Msa1382790:intron 55.0%
GGTGGTTGAAAATGGGGGAG+TGG - tig0020524:62488-62507 None:intergenic 55.0%
GGAACTGTGCTAGGAGCTTC+AGG - tig0020524:63611-63630 None:intergenic 55.0%
GTGGTAACTGGTGCCTTGGT+TGG - tig0020524:63671-63690 None:intergenic 55.0%
CGTAGTGGTAACTGGTGCCT+TGG - tig0020524:63675-63694 None:intergenic 55.0%
! TTCTTTGGGAGAGAGGGACG+GGG - tig0020524:63755-63774 None:intergenic 55.0%
! TATAGAGGTGCAGCAGCGGC+TGG - tig0020524:60892-60911 None:intergenic 60.0%
CCTAACCCCGTCCCCCAAAA+AGG - tig0020524:61924-61943 None:intergenic 60.0%
!! CCTTTTTGGGGGACGGGGTT+AGG + tig0020524:61921-61940 Msa1382790:intron 60.0%
GGGGGAGTGGAATTGGAGGT+TGG - tig0020524:62475-62494 None:intergenic 60.0%
! TCTTTGGGAGAGAGGGACGG+GGG - tig0020524:63754-63773 None:intergenic 60.0%
! GGGGTGGGTTCAGAGGGATG+AGG - tig0020524:63735-63754 None:intergenic 65.0%
! GGGACGGGGGTGGGTTCAGA+GGG - tig0020524:63741-63760 None:intergenic 70.0%
! AGGGACGGGGGTGGGTTCAG+AGG - tig0020524:63742-63761 None:intergenic 70.0%
TGGGAGAGAGGGACGGGGGT+GGG - tig0020524:63750-63769 None:intergenic 70.0%
TTGGGAGAGAGGGACGGGGG+TGG - tig0020524:63751-63770 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020524 gene 60078 64202 60078 ID=Msa1382790;Name=Msa1382790
tig0020524 mRNA 60078 64202 60078 ID=Msa1382790-mRNA-1;Parent=Msa1382790;Name=Msa1382790-mRNA-1;_AED=0.11;_eAED=0.11;_QI=289|1|1|1|1|1|6|349|217
tig0020524 exon 60078 60468 60078 ID=Msa1382790-mRNA-1:exon:8265;Parent=Msa1382790-mRNA-1
tig0020524 exon 61177 61329 61177 ID=Msa1382790-mRNA-1:exon:8266;Parent=Msa1382790-mRNA-1
tig0020524 exon 61685 61837 61685 ID=Msa1382790-mRNA-1:exon:8267;Parent=Msa1382790-mRNA-1
tig0020524 exon 62072 62155 62072 ID=Msa1382790-mRNA-1:exon:8268;Parent=Msa1382790-mRNA-1
tig0020524 exon 63590 63725 63590 ID=Msa1382790-mRNA-1:exon:8269;Parent=Msa1382790-mRNA-1
tig0020524 exon 63828 64202 63828 ID=Msa1382790-mRNA-1:exon:8270;Parent=Msa1382790-mRNA-1
tig0020524 five_prime_UTR 60078 60366 60078 ID=Msa1382790-mRNA-1:five_prime_utr;Parent=Msa1382790-mRNA-1
tig0020524 CDS 60367 60468 60367 ID=Msa1382790-mRNA-1:cds;Parent=Msa1382790-mRNA-1
tig0020524 CDS 61177 61329 61177 ID=Msa1382790-mRNA-1:cds;Parent=Msa1382790-mRNA-1
tig0020524 CDS 61685 61837 61685 ID=Msa1382790-mRNA-1:cds;Parent=Msa1382790-mRNA-1
tig0020524 CDS 62072 62155 62072 ID=Msa1382790-mRNA-1:cds;Parent=Msa1382790-mRNA-1
tig0020524 CDS 63590 63725 63590 ID=Msa1382790-mRNA-1:cds;Parent=Msa1382790-mRNA-1
tig0020524 CDS 63828 63853 63828 ID=Msa1382790-mRNA-1:cds;Parent=Msa1382790-mRNA-1
tig0020524 three_prime_UTR 63854 64202 63854 ID=Msa1382790-mRNA-1:three_prime_utr;Parent=Msa1382790-mRNA-1
Gene Sequence

>Msa1382790

ATGGGGAATATATTCGTGAAGAAACCTAAGGTAACGGACGTAGATCGTGCAATTCTAGCACTCAAGACCCAGAGACGCAAACTTGCTCAGTATCAACAAAAGCTTGATGCTGTTATTGAAGCAGAAAAGCAAGCTGCACGAGACTTGATTCGTGAAAAGAAGAAAGATAGGGCCTTGTTGGCGTTAAAGAAGAAAAAGACACAAGAAGAATTATTGAAGCAAGTTGACACCTGGCTTATAAATGTTGAGCAACAATTAGCAGATATTGAACTGACAAGCAAGCAGAAGGCTGTCTTTGAAAGTTTAAAGGCTGGTAGTAAAGCAATTGAAGCCATACAAAGTGAGATAAACATTGAAGATGTTCAGAAACTTATGGATGACACCGCTGAAGCAAAAGCTTATCAAGATGAAATTAATGCAATACTTGGGGAGCAATTATCAGCAGAAGATGAAGAGGAGATTTTGGCAGAGTTTGAGAACTTGGAAACCCAGTTTGCAGTCGAAGATCTTCCTGAAGCTCCTAGCACAGTTCCTGACAAGGTTGACGAAAAGTTGGACCTTCTTGATGTTCCAACCAAGGCACCAGTTACCACTACGAGTGATGCTGAAGTATCTATAAAAAGAAAAGTTATGGAGGAACCATTGGCAGCTTGA

Protein sequence

>Msa1382790

MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDTWLINVEQQLADIELTSKQKAVFESLKAGSKAIEAIQSEINIEDVQKLMDDTAEAKAYQDEINAILGEQLSAEDEEEILAEFENLETQFAVEDLPEAPSTVPDKVDEKLDLLDVPTKAPVTTTSDAEVSIKRKVMEEPLAA*