AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0980020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0980020 MtrunA17_Chr6g0460211 100.000 149 0 0 1 149 1 149 1.74e-106 300
Msa0980020 MtrunA17_Chr3g0093271 99.329 149 1 0 1 149 52 200 4.50e-106 300
Msa0980020 MtrunA17_Chr5g0440931 99.329 149 1 0 1 149 1 149 6.63e-106 298
Msa0980020 MtrunA17_Chr7g0254731 98.658 149 2 0 1 149 1 149 1.79e-104 295
Msa0980020 MtrunA17_Chr1g0166281 78.378 148 32 0 1 148 1 148 2.67e-83 241
Msa0980020 MtrunA17_Chr1g0166281 47.692 65 34 0 85 149 12 76 4.12e-12 60.1
Msa0980020 MtrunA17_Chr1g0188171 77.703 148 33 0 1 148 1 148 4.41e-83 241
Msa0980020 MtrunA17_Chr1g0188171 45.070 71 36 1 82 149 6 76 2.21e-11 58.2
Msa0980020 MtrunA17_Chr7g0274101 62.838 148 55 0 1 148 1 148 1.75e-57 176
Msa0980020 MtrunA17_Chr1g0185001 58.503 147 60 1 1 147 1 146 3.46e-57 175
Msa0980020 MtrunA17_Chr1g0185001 40.260 77 45 1 73 149 1 76 5.04e-12 59.7
Msa0980020 MtrunA17_Chr5g0398751 51.007 149 71 1 1 149 1 147 3.68e-49 154
Msa0980020 MtrunA17_Chr3g0100541 53.425 146 53 1 1 146 41 171 2.27e-43 141
Msa0980020 MtrunA17_Chr8g0366401 45.946 148 77 1 4 148 9 156 2.65e-43 140
Msa0980020 MtrunA17_Chr7g0245231 45.455 143 78 0 4 146 22 164 3.76e-39 130
Msa0980020 MtrunA17_Chr7g0245231 46.970 66 35 0 84 149 29 94 2.47e-12 61.2
Msa0980020 MtrunA17_Chr1g0161211 47.945 146 72 1 4 149 42 183 2.99e-37 126
Msa0980020 MtrunA17_Chr6g0450921 44.056 143 80 0 4 146 21 163 3.15e-37 125
Msa0980020 MtrunA17_Chr6g0450921 43.421 76 43 0 74 149 18 93 1.60e-12 61.6
Msa0980020 MtrunA17_Chr3g0100511 46.897 145 62 1 1 145 41 170 1.06e-36 124
Msa0980020 MtrunA17_Chr4g0062221 43.262 141 78 1 8 146 7 147 1.30e-36 123
Msa0980020 MtrunA17_Chr4g0062221 46.875 64 34 0 16 79 90 153 1.09e-12 62.0
Msa0980020 MtrunA17_Chr3g0100561 46.207 145 63 1 1 145 41 170 1.47e-34 118
Msa0980020 MtrunA17_Chr8g0368681 42.657 143 80 1 6 146 6 148 2.04e-34 117
Msa0980020 MtrunA17_Chr8g0368681 39.706 68 41 0 12 79 87 154 7.87e-11 57.0
Msa0980020 MtrunA17_Chr8g0391691 48.855 131 67 0 12 142 36 166 7.15e-34 117
Msa0980020 MtrunA17_Chr8g0391691 54.688 64 29 0 6 69 103 166 3.56e-16 71.6
Msa0980020 MtrunA17_Chr4g0033601 44.928 138 74 1 11 146 4 141 6.08e-33 114
Msa0980020 MtrunA17_Chr4g0033601 44.118 68 36 1 8 73 74 141 6.99e-11 57.0
Msa0980020 MtrunA17_Chr8g0392951 44.444 135 74 1 12 146 24 157 7.92e-32 111
Msa0980020 MtrunA17_Chr8g0392951 43.284 67 38 0 7 73 91 157 2.13e-12 61.2
Msa0980020 MtrunA17_Chr3g0100471 68.000 75 24 0 1 75 41 115 3.31e-31 108
Msa0980020 MtrunA17_Chr5g0434951 42.963 135 76 1 12 146 4 137 8.86e-31 107
Msa0980020 MtrunA17_Chr5g0434951 39.706 68 41 0 8 75 72 139 2.93e-11 57.8
Msa0980020 MtrunA17_Chr3g0111371 42.963 135 73 1 12 146 5 135 1.24e-28 102
Msa0980020 MtrunA17_Chr3g0111371 43.750 64 36 0 12 75 74 137 5.15e-13 62.4
Msa0980020 MtrunA17_Chr1g0169581 39.416 137 81 1 12 146 4 140 2.94e-28 101
Msa0980020 MtrunA17_Chr1g0169581 43.750 64 36 0 12 75 79 142 2.56e-12 60.5
Msa0980020 MtrunA17_Chr6g0482731 40.288 139 81 2 12 149 26 163 3.16e-27 100
Msa0980020 MtrunA17_Chr6g0482731 43.836 73 41 0 6 78 93 165 5.37e-13 63.2
Msa0980020 MtrunA17_Chr5g0444171 40.268 149 85 3 1 148 386 531 6.81e-27 104
Msa0980020 MtrunA17_Chr7g0267751 41.096 146 83 2 1 146 429 571 7.26e-27 104
Msa0980020 MtrunA17_Chr7g0256171 44.286 140 76 1 11 148 4 143 9.20e-27 98.2
Msa0980020 MtrunA17_Chr7g0245911 40.000 145 78 3 11 146 46 190 1.85e-26 98.6
Msa0980020 MtrunA17_Chr7g0256701 40.816 147 82 3 5 146 66 212 2.43e-26 99.0
Msa0980020 MtrunA17_Chr4g0074811 39.456 147 85 3 1 146 385 528 2.73e-26 103
Msa0980020 MtrunA17_Chr8g0351681 39.189 148 82 3 7 146 44 191 1.22e-25 96.7
Msa0980020 MtrunA17_Chr1g0200601 39.865 148 82 3 1 146 324 466 1.58e-25 100
Msa0980020 MtrunA17_Chr8g0385341 38.356 146 87 2 1 146 324 466 1.76e-25 100
Msa0980020 MtrunA17_Chr1g0157131 37.162 148 87 3 1 146 368 511 2.42e-25 100
Msa0980020 MtrunA17_Chr4g0064231 40.523 153 73 2 12 146 64 216 2.79e-25 96.3
Msa0980020 MtrunA17_Chr4g0059951 37.838 148 87 4 1 146 367 511 3.21e-25 100
Msa0980020 MtrunA17_Chr1g0176751 37.671 146 88 2 1 146 418 560 3.30e-25 100
Msa0980020 MtrunA17_Chr3g0131181 36.986 146 89 2 1 146 323 465 5.22e-25 99.4
Msa0980020 MtrunA17_Chr5g0397101 38.514 148 85 3 1 146 360 503 6.22e-25 99.4
Msa0980020 MtrunA17_Chr3g0098951 37.662 154 89 2 1 148 377 529 1.35e-24 98.2
Msa0980020 MtrunA17_Chr8g0387671 37.162 148 87 3 1 146 360 503 1.35e-23 95.5
Msa0980020 MtrunA17_Chr1g0169621 33.537 164 82 2 12 148 4 167 4.17e-23 89.4
Msa0980020 MtrunA17_Chr5g0448721 35.616 146 91 2 1 146 390 532 7.02e-23 93.6
Msa0980020 MtrunA17_Chr7g0242561 35.616 146 93 1 1 146 350 494 7.48e-23 93.2
Msa0980020 MtrunA17_Chr1g0170281 34.932 146 92 2 1 146 412 554 1.40e-22 92.8
Msa0980020 MtrunA17_Chr0c02g0489761 36.986 146 90 2 1 146 372 515 3.66e-22 91.3
Msa0980020 MtrunA17_Chr7g0225921 33.333 141 91 3 8 147 2 140 3.90e-22 85.9
Msa0980020 MtrunA17_Chr7g0225921 40.299 67 40 0 7 73 74 140 4.36e-11 57.4
Msa0980020 MtrunA17_Chr2g0329371 41.429 140 78 2 11 146 63 202 6.54e-22 87.0
Msa0980020 MtrunA17_Chr4g0044961 35.766 137 86 1 10 146 55 189 1.22e-21 86.3
Msa0980020 MtrunA17_Chr5g0441691 36.054 147 90 3 1 146 362 505 1.59e-21 89.7
Msa0980020 MtrunA17_Chr4g0057651 35.714 140 80 3 12 147 6 139 1.60e-21 84.3
Msa0980020 MtrunA17_Chr3g0100501 38.194 144 36 2 1 144 41 131 1.92e-21 84.0
Msa0980020 MtrunA17_Chr3g0116151 32.374 139 83 2 13 146 7 139 2.43e-21 84.0
Msa0980020 MtrunA17_Chr3g0116141 32.374 139 83 2 13 146 6 138 2.55e-21 84.0
Msa0980020 MtrunA17_Chr5g0409441 32.847 137 92 0 6 142 16 152 6.04e-21 83.6
Msa0980020 MtrunA17_Chr4g0033371 34.694 147 93 3 1 147 366 509 6.81e-21 87.8
Msa0980020 MtrunA17_Chr3g0100461 64.815 54 19 0 93 146 53 106 1.07e-20 81.6
Msa0980020 MtrunA17_Chr3g0100461 42.667 75 36 1 1 75 41 108 2.59e-13 62.4
Msa0980020 MtrunA17_Chr4g0057661 34.286 140 82 3 12 147 6 139 4.95e-20 80.5
Msa0980020 MtrunA17_Chr1g0173541 31.081 148 101 1 1 148 346 492 5.62e-20 85.1
Msa0980020 MtrunA17_Chr4g0057641 34.286 140 82 3 12 147 6 139 6.61e-20 80.1
Msa0980020 MtrunA17_Chr7g0257751 31.081 148 101 1 1 148 352 498 1.63e-19 84.0
Msa0980020 MtrunA17_Chr6g0459231 28.571 140 99 1 8 147 4 142 3.09e-19 78.6
Msa0980020 MtrunA17_Chr5g0402361 36.029 136 86 1 12 147 48 182 1.30e-18 80.9
Msa0980020 MtrunA17_Chr5g0402361 35.000 140 83 3 12 147 220 355 1.10e-16 75.5
Msa0980020 MtrunA17_Chr5g0402361 28.834 163 88 3 12 146 120 282 4.34e-14 68.2
Msa0980020 MtrunA17_Chr4g0074791 33.333 147 83 5 1 146 390 522 2.14e-18 80.5
Msa0980020 MtrunA17_Chr5g0402331 35.000 140 83 3 12 147 48 183 9.93e-18 75.9
Msa0980020 MtrunA17_Chr8g0373691 32.593 135 89 2 13 146 54 187 1.44e-17 75.5
Msa0980020 MtrunA17_Chr1g0176421 32.374 139 91 2 1 139 455 590 3.90e-17 77.0
Msa0980020 MtrunA17_Chr7g0245371 32.192 146 87 2 13 146 25 170 3.11e-16 71.6
Msa0980020 MtrunA17_Chr5g0396261 33.036 112 73 1 36 145 1 112 4.86e-15 67.0
Msa0980020 MtrunA17_Chr3g0121191 47.059 68 36 0 6 73 150 217 2.53e-14 67.4
Msa0980020 MtrunA17_Chr3g0121191 32.847 137 82 1 11 147 92 218 7.86e-14 66.2
Msa0980020 MtrunA17_Chr5g0405421 27.632 152 98 4 1 146 395 540 7.44e-14 67.8
Msa0980020 MtrunA17_Chr7g0252401 29.861 144 92 4 1 142 23 159 5.26e-12 62.4
Msa0980020 MtrunA17_Chr4g0042491 44.595 74 41 0 73 146 102 175 6.95e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0980020 AT3G43810.2 100.000 148 0 0 1 148 1 148 1.28e-106 303
Msa0980020 AT3G43810.2 45.455 77 41 1 73 149 1 76 4.87e-13 64.3
Msa0980020 AT3G43810.1 100.000 149 0 0 1 149 1 149 2.40e-106 300
Msa0980020 AT2G27030.3 99.329 149 1 0 1 149 1 149 4.05e-106 300
Msa0980020 AT2G27030.3 44.304 79 43 1 1 78 73 151 1.81e-13 64.7
Msa0980020 AT5G21274.1 99.329 149 1 0 1 149 1 149 7.60e-106 298
Msa0980020 AT3G56800.1 99.329 149 1 0 1 149 1 149 9.06e-106 298
Msa0980020 AT2G41110.1 99.329 149 1 0 1 149 1 149 9.06e-106 298
Msa0980020 AT2G27030.1 99.329 149 1 0 1 149 1 149 9.06e-106 298
Msa0980020 AT1G66410.1 97.315 149 4 0 1 149 1 149 2.46e-104 295
Msa0980020 AT5G37780.1 97.315 149 4 0 1 149 1 149 2.46e-104 295
Msa0980020 AT2G41110.2 91.925 161 1 1 1 149 1 161 7.30e-102 289
Msa0980020 AT1G66410.2 91.195 159 4 1 1 149 1 159 5.13e-101 286
Msa0980020 AT5G37780.2 88.415 164 4 1 1 149 1 164 4.69e-100 284
Msa0980020 AT5G37780.3 82.857 175 4 1 1 149 1 175 3.62e-98 280
Msa0980020 AT5G37780.4 97.581 124 3 0 26 149 13 136 7.11e-86 247
Msa0980020 AT5G37780.4 45.455 77 41 1 1 76 60 136 6.60e-14 64.7
Msa0980020 AT3G22930.1 76.389 144 34 0 4 147 27 170 5.23e-80 234
Msa0980020 AT4G14640.1 74.825 143 36 0 5 147 6 148 3.64e-79 231
Msa0980020 AT3G43810.4 100.000 113 0 0 37 149 1 113 1.24e-78 228
Msa0980020 AT3G43810.4 45.455 77 41 1 1 76 37 113 6.11e-14 64.3
Msa0980020 AT3G43810.3 100.000 113 0 0 37 149 1 113 1.24e-78 228
Msa0980020 AT3G43810.3 45.455 77 41 1 1 76 37 113 6.11e-14 64.3
Msa0980020 AT1G66410.4 97.345 113 3 0 37 149 1 113 3.43e-77 224
Msa0980020 AT1G66410.4 45.455 77 41 1 1 76 37 113 1.52e-14 65.9
Msa0980020 AT1G66410.3 97.345 113 3 0 37 149 1 113 3.43e-77 224
Msa0980020 AT1G66410.3 45.455 77 41 1 1 76 37 113 1.52e-14 65.9
Msa0980020 AT4G14640.2 72.951 122 33 0 26 147 9 130 1.27e-65 196
Msa0980020 AT4G14640.2 46.774 62 33 0 12 73 68 129 4.27e-13 62.8
Msa0980020 AT2G41090.1 64.430 149 50 1 1 149 1 146 5.74e-61 186
Msa0980020 AT2G41100.7 57.229 166 54 2 1 149 55 220 1.61e-54 173
Msa0980020 AT2G41100.7 62.766 94 32 1 4 97 148 238 6.06e-31 112
Msa0980020 AT2G41100.7 45.669 127 53 2 36 146 1 127 1.72e-29 108
Msa0980020 AT2G41100.6 57.229 166 54 2 1 149 55 220 1.61e-54 173
Msa0980020 AT2G41100.6 62.766 94 32 1 4 97 148 238 6.06e-31 112
Msa0980020 AT2G41100.6 45.669 127 53 2 36 146 1 127 1.72e-29 108
Msa0980020 AT2G41100.3 57.229 166 54 2 1 149 55 220 1.61e-54 173
Msa0980020 AT2G41100.3 62.766 94 32 1 4 97 148 238 6.06e-31 112
Msa0980020 AT2G41100.3 45.669 127 53 2 36 146 1 127 1.72e-29 108
Msa0980020 AT2G41100.4 57.229 166 54 2 1 149 90 255 4.23e-54 173
Msa0980020 AT2G41100.4 51.852 162 62 2 1 146 1 162 4.91e-50 163
Msa0980020 AT2G41100.4 62.766 94 32 1 4 97 183 273 1.22e-30 112
Msa0980020 AT2G41100.1 57.229 166 54 2 1 149 90 255 4.23e-54 173
Msa0980020 AT2G41100.1 51.852 162 62 2 1 146 1 162 4.91e-50 163
Msa0980020 AT2G41100.1 62.766 94 32 1 4 97 183 273 1.22e-30 112
Msa0980020 AT4G14640.3 73.786 103 27 0 5 107 6 108 7.13e-54 166
Msa0980020 AT3G22930.2 73.786 103 27 0 4 106 27 129 3.58e-52 162
Msa0980020 AT3G22930.2 46.774 62 33 0 85 146 35 96 3.45e-11 57.8
Msa0980020 AT1G12310.1 49.660 147 72 1 3 149 4 148 4.52e-47 150
Msa0980020 AT1G62820.1 48.980 147 73 1 3 149 4 148 8.99e-47 149
Msa0980020 AT3G51920.1 50.676 148 73 0 1 148 1 148 2.34e-46 148
Msa0980020 AT1G32250.1 42.763 152 81 1 1 146 5 156 9.72e-41 134
Msa0980020 AT3G50360.1 47.183 142 75 0 5 146 20 161 9.16e-40 132
Msa0980020 AT3G50360.1 45.714 70 38 0 80 149 22 91 4.50e-13 63.5
Msa0980020 AT4G37010.2 43.662 142 80 0 5 146 24 165 1.36e-35 121
Msa0980020 AT4G37010.1 43.662 142 80 0 5 146 20 161 1.76e-35 121
Msa0980020 AT2G41100.2 53.077 130 44 2 37 149 1 130 4.19e-35 121
Msa0980020 AT2G41100.2 62.766 94 32 1 4 97 58 148 4.48e-32 113
Msa0980020 AT2G41100.5 61.856 97 34 1 1 97 1 94 5.39e-35 119
Msa0980020 AT2G41100.5 50.649 77 37 1 73 149 1 76 1.53e-17 74.7
Msa0980020 AT1G18530.1 42.069 145 76 2 7 146 2 143 7.79e-34 116
Msa0980020 AT1G18530.1 42.647 68 39 0 12 79 82 149 1.56e-11 59.3
Msa0980020 AT1G24620.1 46.763 139 73 1 9 147 34 171 2.32e-33 116
Msa0980020 AT1G24620.1 49.254 67 34 0 7 73 105 171 1.85e-13 64.7
Msa0980020 AT3G25600.1 41.060 151 81 2 1 146 1 148 9.71e-33 114
Msa0980020 AT3G25600.1 41.176 68 40 0 12 79 87 154 2.18e-11 58.9
Msa0980020 AT3G03000.1 43.836 146 81 1 4 148 12 157 3.14e-32 112
Msa0980020 AT1G18210.2 42.222 135 74 1 12 146 23 153 4.26e-31 110
Msa0980020 AT1G18210.1 42.222 135 74 1 12 146 23 153 4.26e-31 110
Msa0980020 AT1G05990.1 44.604 139 74 2 11 146 4 142 4.42e-31 109
Msa0980020 AT1G66400.1 43.478 138 76 1 12 147 15 152 6.18e-31 109
Msa0980020 AT5G37770.1 42.446 139 76 1 12 146 17 155 8.53e-30 106
Msa0980020 AT5G37770.1 44.615 65 36 0 10 74 92 156 1.41e-13 64.7
Msa0980020 AT5G37770.2 42.446 139 76 1 12 146 17 155 8.53e-30 106
Msa0980020 AT5G37770.2 44.615 65 36 0 10 74 92 156 1.41e-13 64.7
Msa0980020 AT1G73630.1 40.146 137 78 1 12 148 20 152 2.05e-29 105
Msa0980020 AT4G03290.1 45.390 141 72 2 11 146 4 144 2.48e-29 105
Msa0980020 AT4G03290.1 46.875 64 32 1 14 75 83 146 1.96e-11 58.9
Msa0980020 AT2G43290.1 42.657 143 75 3 11 146 64 206 2.51e-29 106
Msa0980020 AT1G76040.1 41.096 146 84 2 1 146 167 310 4.78e-29 108
Msa0980020 AT1G76040.4 41.096 146 84 2 1 146 167 310 4.78e-29 108
Msa0980020 AT1G76040.2 41.096 146 84 2 1 146 405 548 6.41e-28 108
Msa0980020 AT3G59440.1 42.336 137 76 2 12 146 51 186 3.81e-27 100
Msa0980020 AT2G15680.1 37.324 142 87 1 5 146 43 182 1.28e-26 99.0
Msa0980020 AT5G23580.1 39.726 146 85 2 1 146 316 458 1.72e-26 103
Msa0980020 AT4G21940.1 39.597 149 86 3 1 148 395 540 6.80e-26 102
Msa0980020 AT4G21940.2 39.597 149 86 3 1 148 395 540 8.49e-26 102
Msa0980020 AT4G12860.1 40.580 138 80 1 11 146 4 141 3.08e-25 94.7
Msa0980020 AT4G23650.1 38.514 148 85 3 1 146 372 515 3.74e-25 100
Msa0980020 AT4G23650.1 43.478 69 36 1 82 147 377 445 5.13e-11 59.7
Msa0980020 AT1G35670.1 37.671 146 88 2 1 146 320 462 4.56e-25 99.8
Msa0980020 AT4G09570.1 38.514 148 84 3 1 146 319 461 6.67e-25 99.4
Msa0980020 AT3G07490.1 41.304 138 79 1 11 146 4 141 7.27e-25 93.6
Msa0980020 AT4G04720.2 38.255 149 88 3 1 148 373 518 1.42e-24 98.6
Msa0980020 AT4G04720.1 38.255 149 88 3 1 148 373 518 1.42e-24 98.6
Msa0980020 AT3G10660.2 36.301 146 90 2 1 146 480 622 2.11e-24 98.2
Msa0980020 AT3G10660.1 36.301 146 90 2 1 146 480 622 2.11e-24 98.2
Msa0980020 AT4G38230.1 36.986 146 89 2 1 146 174 316 2.27e-24 96.7
Msa0980020 AT5G19360.1 40.136 147 84 3 1 146 362 505 2.66e-24 97.8
Msa0980020 AT4G38230.4 36.986 146 89 2 1 146 318 460 6.40e-24 96.7
Msa0980020 AT4G38230.3 36.986 146 89 2 1 146 318 460 6.40e-24 96.7
Msa0980020 AT4G38230.2 36.986 146 89 2 1 146 348 490 6.53e-24 96.7
Msa0980020 AT1G61950.1 38.514 148 85 3 1 146 393 536 6.68e-24 96.7
Msa0980020 AT3G10190.1 40.146 137 79 3 12 146 70 205 7.08e-24 92.4
Msa0980020 AT5G12180.1 39.456 147 85 3 1 146 367 510 1.15e-23 95.9
Msa0980020 AT5G04870.1 35.616 146 91 2 1 146 444 586 2.22e-23 95.5
Msa0980020 AT1G74740.1 35.570 149 93 3 1 148 353 499 4.29e-23 94.4
Msa0980020 AT3G20410.2 36.301 146 91 2 1 146 385 528 1.02e-22 93.2
Msa0980020 AT3G20410.1 36.301 146 91 2 1 146 385 528 1.02e-22 93.2
Msa0980020 AT2G17290.1 35.616 146 91 2 1 146 379 521 1.56e-22 92.8
Msa0980020 AT2G17290.2 35.616 146 91 2 1 146 379 521 1.56e-22 92.8
Msa0980020 AT3G50770.1 36.429 140 84 2 12 146 64 203 2.10e-22 88.6
Msa0980020 AT3G50770.1 44.118 68 38 0 82 149 61 128 8.40e-13 63.5
Msa0980020 AT4G04740.4 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0980020 AT4G04740.6 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0980020 AT4G04740.5 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0980020 AT4G04740.3 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0980020 AT4G04740.1 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0980020 AT4G04740.7 36.986 146 88 3 2 146 363 505 4.19e-22 91.7
Msa0980020 AT2G38910.1 34.932 146 92 2 1 146 428 570 4.60e-22 91.7
Msa0980020 AT4G04695.1 36.242 149 91 3 1 148 325 470 4.69e-22 91.3
Msa0980020 AT4G35310.2 34.932 146 92 2 1 146 391 533 4.90e-22 91.7
Msa0980020 AT4G35310.1 34.932 146 92 2 1 146 391 533 4.90e-22 91.7
Msa0980020 AT5G17470.1 37.500 136 82 2 15 148 5 139 5.92e-22 85.9
Msa0980020 AT5G17470.1 47.541 61 32 0 14 74 79 139 2.79e-12 60.8
Msa0980020 AT1G50700.1 34.932 146 93 2 1 146 367 510 8.56e-22 90.9
Msa0980020 AT4G04700.1 38.095 147 87 3 1 146 325 468 1.48e-21 90.1
Msa0980020 AT5G42380.1 36.232 138 87 1 10 146 47 184 2.16e-21 85.5
Msa0980020 AT1G18890.1 37.333 150 89 4 1 148 357 503 5.25e-21 88.6
Msa0980020 AT3G57530.1 35.374 147 91 3 1 146 357 500 1.19e-20 87.4
Msa0980020 AT5G12480.2 34.228 149 96 2 1 148 259 406 1.22e-20 87.0
Msa0980020 AT2G36180.1 41.176 136 76 3 15 147 3 137 1.39e-20 82.4
Msa0980020 AT5G12480.1 34.228 149 96 2 1 148 353 500 1.47e-20 87.4
Msa0980020 AT3G03400.1 37.600 125 76 1 17 139 10 134 2.30e-20 81.6
Msa0980020 AT3G03410.1 35.556 135 78 1 14 148 4 129 9.75e-20 79.7
Msa0980020 AT3G51850.1 32.877 146 97 1 1 146 348 492 1.04e-19 84.7
Msa0980020 AT2G41410.1 34.459 148 94 3 4 148 62 209 1.44e-19 81.6
Msa0980020 AT5G19450.2 32.215 149 99 2 1 148 351 498 7.69e-19 82.4
Msa0980020 AT5G19450.1 32.215 149 99 2 1 148 351 498 7.69e-19 82.4
Msa0980020 AT4G04710.3 34.694 147 92 3 1 146 312 455 1.02e-18 82.0
Msa0980020 AT4G04710.2 34.694 147 92 3 1 146 326 469 1.04e-18 82.0
Msa0980020 AT4G04710.1 34.694 147 92 3 1 146 339 482 1.09e-18 82.0
Msa0980020 AT2G41860.1 31.507 146 99 1 1 146 348 492 7.48e-18 79.3
Msa0980020 AT2G41860.2 31.507 146 99 1 1 146 348 492 8.08e-18 79.3
Msa0980020 AT4G04710.4 34.899 149 91 4 1 146 339 484 1.48e-17 78.6
Msa0980020 AT1G50700.2 30.233 172 92 3 1 146 367 536 2.21e-17 78.2
Msa0980020 AT2G31500.1 32.000 150 97 4 1 147 360 507 9.73e-17 76.3
Msa0980020 AT4G20780.1 33.775 151 78 3 17 146 34 183 1.43e-16 73.2
Msa0980020 AT4G04740.2 34.848 132 82 3 2 132 363 491 4.52e-16 74.3
Msa0980020 AT5G44460.1 33.566 143 83 2 16 146 32 174 3.72e-15 69.3
Msa0980020 AT1G76040.3 36.634 101 63 1 1 101 405 504 1.46e-14 70.1
Msa0980020 AT4G21940.3 37.374 99 61 1 1 99 395 492 2.30e-14 69.3
Msa0980020 AT1G76650.1 32.168 143 90 2 7 146 38 176 3.73e-14 66.6
Msa0980020 AT1G76650.3 32.168 143 90 2 7 146 38 176 3.73e-14 66.6
Msa0980020 AT5G66210.1 27.632 152 98 4 1 146 358 503 4.46e-14 68.6
Msa0980020 AT5G66210.2 27.632 152 98 4 1 146 358 503 4.46e-14 68.6
Msa0980020 AT2G17890.1 27.632 152 98 5 1 146 404 549 5.35e-14 68.6
Msa0980020 AT3G51850.2 33.962 106 69 1 1 106 348 452 5.42e-14 68.6
Msa0980020 AT1G76640.1 31.852 135 86 2 16 146 26 158 8.35e-14 65.1
Msa0980020 AT5G49480.1 28.758 153 101 3 1 146 7 158 5.68e-13 63.2
Msa0980020 AT1G21550.1 30.719 153 82 4 11 147 9 153 1.17e-12 62.0
Msa0980020 AT1G50700.3 35.354 99 63 1 1 99 367 464 1.59e-12 64.3
Msa0980020 AT1G76650.2 31.469 143 81 3 7 146 38 166 1.42e-11 59.3
Msa0980020 AT5G66210.3 26.718 131 90 3 1 125 358 488 2.67e-11 60.8
Msa0980020 AT4G36070.1 27.273 154 100 5 1 148 367 514 7.55e-11 59.3
Msa0980020 AT4G36070.2 27.273 154 100 5 1 148 367 514 7.77e-11 59.3

Find 62 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCCTACCATTCATATTT+TGG 0.145819 6_4:-17822755 Msa0980020:three_prime_UTR
ATTTCAGAGAATGTTGATTA+AGG 0.261146 6_4:-17822983 Msa0980020:three_prime_UTR
CACGTAGCCTCAAATTAAAT+TGG 0.270480 6_4:+17822593 None:intergenic
ACAAGAGGTTTAAGTAGTTT+AGG 0.305310 6_4:-17822648 Msa0980020:three_prime_UTR
GGAGCTGAAAGAGGCGTTTC+GGG 0.325103 6_4:-17823218 Msa0980020:CDS
CCCAACTGAGGCAGAGCTTC+AGG 0.327616 6_4:-17823341 Msa0980020:CDS
GGAACTGTTATGCGTTCATT+GGG 0.343588 6_4:-17823370 Msa0980020:CDS
TGGAACTGTTATGCGTTCAT+TGG 0.360083 6_4:-17823371 Msa0980020:CDS
ATGGTTAAATGTTTGATTAG+TGG 0.365514 6_4:-17822873 Msa0980020:three_prime_UTR
TAGAAAACCAATTTAATTTG+AGG 0.376103 6_4:-17822600 None:intergenic
AGGAGCTGAAAGAGGCGTTT+CGG 0.391958 6_4:-17823219 Msa0980020:CDS
AGCTTTCAGCTTATTCGATA+AGG 0.414465 6_4:-17826900 Msa0980020:CDS
TCCTGAAGCTCTGCCTCAGT+TGG 0.419465 6_4:+17823340 None:intergenic
TGATCAGATCTCTGAGTTCA+AGG 0.430216 6_4:-17826924 Msa0980020:CDS
GTGGTAAGTCCTGCTGCTAT+TGG 0.435030 6_4:-17822854 Msa0980020:three_prime_UTR
CCTGAAGCTCTGCCTCAGTT+GGG 0.457983 6_4:+17823341 None:intergenic
AAACTATGAGGAATTCGTTA+AGG 0.465882 6_4:-17823059 Msa0980020:CDS
TTTAAGTAGTTTAGGACTTG+TGG 0.466718 6_4:-17822640 Msa0980020:three_prime_UTR
ATCCGTGAGGCTGATGTTGA+TGG 0.484617 6_4:-17823094 Msa0980020:CDS
TGCATCACAACCAAGGAGCT+TGG 0.485199 6_4:-17823391 Msa0980020:CDS
CGCCTCTTTCAGCTCCTCCT+CGG 0.490822 6_4:+17823225 None:intergenic
CATAACAGTTCCAAGCTCCT+TGG 0.491995 6_4:+17823381 None:intergenic
CCCTGAGTTTCTTAACCTCA+TGG 0.495316 6_4:-17823272 Msa0980020:CDS
TGCTATTGGTTGTGGTCGAA+TGG 0.507018 6_4:-17822840 Msa0980020:three_prime_UTR
AGTCCTGCTGCTATTGGTTG+TGG 0.512344 6_4:-17822848 Msa0980020:three_prime_UTR
ACCATTCACCAAAATATGAA+TGG 0.512874 6_4:+17822747 None:intergenic
TTTCAGCTCCTCCTCGGAGT+CGG 0.513859 6_4:+17823231 None:intergenic
CATCTCATCGACTTCTTCAT+CGG 0.523419 6_4:+17823117 None:intergenic
GCCATGAGGTTAAGAAACTC+AGG 0.525054 6_4:+17823271 None:intergenic
TGATGGTCAAATAAACTATG+AGG 0.543599 6_4:-17823071 Msa0980020:CDS
TGATTAAGGAAATGACAATA+CGG 0.550861 6_4:-17822969 Msa0980020:three_prime_UTR
CTCCGAGGAGGAGCTGAAAG+AGG 0.551298 6_4:-17823227 Msa0980020:CDS
TTTAGAGAGAGAAACTGAAT+CGG 0.551786 6_4:+17827002 None:intergenic
TTCAGCTTATTCGATAAGGA+TGG 0.562759 6_4:-17826896 Msa0980020:CDS
GGAAATGACAATACGGGAGG+AGG 0.563326 6_4:-17822962 Msa0980020:three_prime_UTR
CGACCACAACCAATAGCAGC+AGG 0.573340 6_4:+17822845 None:intergenic
GATTAAGGAAATGACAATAC+GGG 0.579091 6_4:-17822968 Msa0980020:three_prime_UTR
GCAATGATTACTACAAAGCA+AGG 0.582533 6_4:+17822919 None:intergenic
CATCGGTGAGCTTCTCACCA+AGG 0.582642 6_4:+17823134 None:intergenic
CCTTCATCTTCCTTGCCATG+AGG 0.583416 6_4:+17823257 None:intergenic
AAGAAGAAGAAAAGCGACGA+TGG 0.585072 6_4:-17826963 Msa0980020:exon
TCTTCTTGAATGGTGACAAG+AGG 0.585083 6_4:-17822663 Msa0980020:three_prime_UTR
CCTCATGGCAAGGAAGATGA+AGG 0.591761 6_4:-17823257 Msa0980020:CDS
ATCAATGAAGTAGATGCTGA+TGG 0.594359 6_4:-17823313 Msa0980020:CDS
CACCATCAACATCAGCCTCA+CGG 0.595594 6_4:+17823092 None:intergenic
GGTGAGCTTCTCACCAAGGT+TGG 0.601588 6_4:+17823138 None:intergenic
GGAATTCGTTAAGGTCATGA+TGG 0.606742 6_4:-17823050 Msa0980020:CDS
TTCACCAAAATATGAATGGT+AGG 0.610974 6_4:+17822751 None:intergenic
AGTTTCTTAACCTCATGGCA+AGG 0.615477 6_4:-17823267 Msa0980020:CDS
GAGGCTGATGTTGATGGTGA+TGG 0.620773 6_4:-17823088 Msa0980020:CDS
GAAGTAGATGCTGATGGGAA+TGG 0.624358 6_4:-17823307 Msa0980020:CDS
CGTCATGTGATGACCAACCT+TGG 0.632057 6_4:-17823151 Msa0980020:CDS
CCATGAGGTTAAGAAACTCA+GGG 0.643314 6_4:+17823272 None:intergenic
TTATTCGATAAGGATGGCGA+TGG 0.647329 6_4:-17826890 Msa0980020:intron
TGCAGGTTGCATCACAACCA+AGG 0.653135 6_4:-17823398 Msa0980020:intron
GAACTGTTATGCGTTCATTG+GGG 0.667564 6_4:-17823369 Msa0980020:CDS
GATGAAGGACACCGACTCCG+AGG 0.669209 6_4:-17823242 Msa0980020:CDS
TAAGGAAATGACAATACGGG+AGG 0.674426 6_4:-17822965 Msa0980020:three_prime_UTR
TCAATGAAGTAGATGCTGAT+GGG 0.676011 6_4:-17823312 Msa0980020:CDS
GAAGGACACCGACTCCGAGG+AGG 0.689648 6_4:-17823239 Msa0980020:CDS
ATTGGGGCAAAACCCAACTG+AGG 0.728233 6_4:-17823353 Msa0980020:CDS
AGTCGATGAGATGATCCGTG+AGG 0.760734 6_4:-17823107 Msa0980020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATGTAAAAAGAAA+GGG + chr6_4:17826761-17826780 None:intergenic 10.0%
!! CAATCTACAAAAAAAAAAAA+AGG + chr6_4:17822812-17822831 None:intergenic 15.0%
!! AAACAAATTAACAAAATCAA+AGG + chr6_4:17822986-17823005 None:intergenic 15.0%
!!! TTAATTTGTTTTGAATTTCA+TGG - chr6_4:17822995-17823014 Msa0980020:three_prime_UTR 15.0%
!!! TTGTTTTTTTTTTAAAACCA+AGG + chr6_4:17823691-17823710 None:intergenic 15.0%
!!! TTGGTTTTAAAAAAAAAACA+AGG - chr6_4:17823690-17823709 Msa0980020:intron 15.0%
!!! TGGTTTTAAAAAAAAAACAA+GGG - chr6_4:17823691-17823710 Msa0980020:intron 15.0%
!!! TTTGAATTTTGATATTATGT+TGG - chr6_4:17823966-17823985 Msa0980020:intron 15.0%
!! TAAAACATTTCATAAGATTT+AGG - chr6_4:17824051-17824070 Msa0980020:intron 15.0%
!!! AACTTTTATTCATGATAATA+TGG + chr6_4:17825895-17825914 None:intergenic 15.0%
!! GAAATAAAATGTAAAAAGAA+AGG + chr6_4:17826762-17826781 None:intergenic 15.0%
!!! TCTTTTTACATTTTATTTCA+TGG - chr6_4:17826763-17826782 Msa0980020:intron 15.0%
!!! TTTTATAATTTCTTCTTGAA+TGG - chr6_4:17826982-17827001 Msa0980020:five_prime_UTR 15.0%
!! TACTTACTACTTTATAATGA+CGG - chr6_4:17823465-17823484 Msa0980020:intron 20.0%
!!! AATTATCAGTTCTTTTCTTT+AGG - chr6_4:17823914-17823933 Msa0980020:intron 20.0%
!!! TTTCGTAATGTTTTGAATTT+TGG - chr6_4:17824001-17824020 Msa0980020:intron 20.0%
!! CGATTCTCTTAAATTATTAT+CGG + chr6_4:17824298-17824317 None:intergenic 20.0%
!! CTGGTTATTAATTACAAAAA+GGG + chr6_4:17824578-17824597 None:intergenic 20.0%
!! ATCATTTAACCATTATATCA+AGG + chr6_4:17824656-17824675 None:intergenic 20.0%
!!! ATCCATAAATATTTTTCCTA+TGG - chr6_4:17824734-17824753 Msa0980020:intron 20.0%
!! AACCATAGGAAAAATATTTA+TGG + chr6_4:17824739-17824758 None:intergenic 20.0%
!! TTATTATGTGTTGTCAATAA+CGG - chr6_4:17824843-17824862 Msa0980020:intron 20.0%
!!! TCAAAGTATATGTTTTTCAA+TGG + chr6_4:17825110-17825129 None:intergenic 20.0%
!!! TTTTTCATTCAATCAAATTG+AGG + chr6_4:17825133-17825152 None:intergenic 20.0%
!! GAAAAAAGTTAAATACATGT+TGG - chr6_4:17825147-17825166 Msa0980020:intron 20.0%
!!! ATCAATAACACTTTGAAAAA+GGG + chr6_4:17825282-17825301 None:intergenic 20.0%
!!! AATCAATAACACTTTGAAAA+AGG + chr6_4:17825283-17825302 None:intergenic 20.0%
!! TTCAAATTCTACTATGATAT+AGG - chr6_4:17825542-17825561 Msa0980020:intron 20.0%
!! TATTTCATTCAATCAAATAC+AGG + chr6_4:17825701-17825720 None:intergenic 20.0%
!!! TTTTCTAGATTAACTTACTT+AGG + chr6_4:17827042-17827061 None:intergenic 20.0%
!!! TTTGGATTAGAAATTTTCCT+AGG - chr6_4:17822950-17822969 Msa0980020:three_prime_UTR 25.0%
!! TTAGAAATTTTCCTAGGTTT+TGG - chr6_4:17822956-17822975 Msa0980020:three_prime_UTR 25.0%
!! AAAGAAAATTGCGATTTGTT+AGG - chr6_4:17823185-17823204 Msa0980020:CDS 25.0%
!!! TATGATAGTTCTAACTTCTA+AGG - chr6_4:17823235-17823254 Msa0980020:CDS 25.0%
! TAGTTTATTACGATAGTGAT+AGG - chr6_4:17823280-17823299 Msa0980020:CDS 25.0%
! TTTCACGTAAAATGAAATAG+CGG + chr6_4:17823656-17823675 None:intergenic 25.0%
! TATCTAATATAAAGCAACGA+CGG + chr6_4:17823860-17823879 None:intergenic 25.0%
! AACATTTCATAAGATTTAGG+TGG - chr6_4:17824054-17824073 Msa0980020:intron 25.0%
! TCCTAAAAGTTATGAAATAG+CGG - chr6_4:17824186-17824205 Msa0980020:intron 25.0%
! TTAACCATAGTAGTTAATAG+CGG + chr6_4:17824273-17824292 None:intergenic 25.0%
! CCTATTTAACACTAACAATT+CGG + chr6_4:17824528-17824547 None:intergenic 25.0%
! GCTGGTTATTAATTACAAAA+AGG + chr6_4:17824579-17824598 None:intergenic 25.0%
! TTTGTAATTAATAACCAGCA+AGG - chr6_4:17824580-17824599 Msa0980020:intron 25.0%
! TAAAGATTATGATTCCAATG+AGG - chr6_4:17824604-17824623 Msa0980020:intron 25.0%
!!! AAGTGTTATTGACATTTTTG+TGG - chr6_4:17824706-17824725 Msa0980020:intron 25.0%
! GATTCACTATTTAGTACAAA+GGG + chr6_4:17824935-17824954 None:intergenic 25.0%
! TGATTCACTATTTAGTACAA+AGG + chr6_4:17824936-17824955 None:intergenic 25.0%
!! TATCTTGTTATGTCATTTGA+AGG - chr6_4:17825070-17825089 Msa0980020:intron 25.0%
!! ATCTTGTTATGTCATTTGAA+GGG - chr6_4:17825071-17825090 Msa0980020:intron 25.0%
! AAACTCTCATCTTGATTTAA+TGG - chr6_4:17825221-17825240 Msa0980020:intron 25.0%
!!! TGACATGTTTTGAAAGATAT+GGG - chr6_4:17825382-17825401 Msa0980020:intron 25.0%
! TTATTCAGTATTGTCAATAG+CGG - chr6_4:17825420-17825439 Msa0980020:intron 25.0%
! ACAACACTTTCTATTGAATA+GGG - chr6_4:17825496-17825515 Msa0980020:intron 25.0%
! ATTAGCGACATAACTAAAAT+GGG + chr6_4:17826056-17826075 None:intergenic 25.0%
! TATTAGCGACATAACTAAAA+TGG + chr6_4:17826057-17826076 None:intergenic 25.0%
! ATTAGTTAGATGATTATGGT+TGG + chr6_4:17826138-17826157 None:intergenic 25.0%
! GAGAATTAGTTAGATGATTA+TGG + chr6_4:17826142-17826161 None:intergenic 25.0%
! TAACTAATTCTCATCTAACT+AGG - chr6_4:17826150-17826169 Msa0980020:intron 25.0%
! TAAGAAGTCATTTGCTTATA+GGG - chr6_4:17826173-17826192 Msa0980020:intron 25.0%
!!! CTCTGAAATTTAGATTTTTG+TGG + chr6_4:17826661-17826680 None:intergenic 25.0%
!! ATTTCAGAGAATGTTGATTA+AGG - chr6_4:17826672-17826691 Msa0980020:intron 25.0%
! TGATTAAGGAAATGACAATA+CGG - chr6_4:17826686-17826705 Msa0980020:intron 25.0%
! ATGGTTAAATGTTTGATTAG+TGG - chr6_4:17826782-17826801 Msa0980020:intron 25.0%
TTTAGAGAGAGAAACTGAAT+CGG + chr6_4:17822656-17822675 None:intergenic 30.0%
!!! TTTGTGATGCGATTTTGATT+AGG - chr6_4:17822861-17822880 Msa0980020:three_prime_UTR 30.0%
!! GATTGATTTGTGATGTGATT+TGG - chr6_4:17822932-17822951 Msa0980020:three_prime_UTR 30.0%
AATACCAGAGTAGTTAATAG+CGG - chr6_4:17823497-17823516 Msa0980020:intron 30.0%
TGAAAATACAAGATTCTCCT+TGG - chr6_4:17823671-17823690 Msa0980020:intron 30.0%
GAGAGAAACTGAAGTTATTA+GGG + chr6_4:17823739-17823758 None:intergenic 30.0%
AGAGAGAAACTGAAGTTATT+AGG + chr6_4:17823740-17823759 None:intergenic 30.0%
CTTCCTTCTTTCATTCTTTA+CGG - chr6_4:17823758-17823777 Msa0980020:intron 30.0%
TTTCCAATGCTATGTTATGT+TGG - chr6_4:17823891-17823910 Msa0980020:intron 30.0%
ATTCCAACATAACATAGCAT+TGG + chr6_4:17823897-17823916 None:intergenic 30.0%
!! CGTAATGTTTTGAATTTTGG+TGG - chr6_4:17824004-17824023 Msa0980020:intron 30.0%
!! ACCGCTATTTCATAACTTTT+AGG + chr6_4:17824190-17824209 None:intergenic 30.0%
ATGACTTTGATTACAAGTGT+TGG + chr6_4:17824385-17824404 None:intergenic 30.0%
CCGAATTGTTAGTGTTAAAT+AGG - chr6_4:17824525-17824544 Msa0980020:intron 30.0%
ATCATAATCTTTATCCTTGC+TGG + chr6_4:17824597-17824616 None:intergenic 30.0%
!! TTTTGAGAAACATGACATGA+TGG - chr6_4:17824784-17824803 Msa0980020:intron 30.0%
! TAACGGATCAAAGCAAATAA+TGG - chr6_4:17824860-17824879 Msa0980020:intron 30.0%
AACGGATCAAAGCAAATAAT+GGG - chr6_4:17824861-17824880 Msa0980020:intron 30.0%
! ACATGTTGGCTATATTTATG+TGG - chr6_4:17825161-17825180 Msa0980020:intron 30.0%
TATGTGGCTTATATACTAGT+AGG - chr6_4:17825177-17825196 Msa0980020:intron 30.0%
ATGTGGCTTATATACTAGTA+GGG - chr6_4:17825178-17825197 Msa0980020:intron 30.0%
! ATTCGTAGATATTTTGCCTA+TGG - chr6_4:17825314-17825333 Msa0980020:intron 30.0%
!!! TGTATGAGTTTTGAGAAACA+TGG - chr6_4:17825355-17825374 Msa0980020:intron 30.0%
!!! GTGACATGTTTTGAAAGATA+TGG - chr6_4:17825381-17825400 Msa0980020:intron 30.0%
TATTCAGTATTGTCAATAGC+GGG - chr6_4:17825421-17825440 Msa0980020:intron 30.0%
GACAACACTTTCTATTGAAT+AGG - chr6_4:17825495-17825514 Msa0980020:intron 30.0%
TGGTTCAGATACTTGAAAAA+TGG - chr6_4:17825995-17826014 Msa0980020:intron 30.0%
GTAAGAAGTCATTTGCTTAT+AGG - chr6_4:17826172-17826191 Msa0980020:intron 30.0%
AAGAAGTCATTTGCTTATAG+GGG - chr6_4:17826174-17826193 Msa0980020:intron 30.0%
TGATGGTCAAATAAACTATG+AGG - chr6_4:17826584-17826603 Msa0980020:intron 30.0%
AAACTATGAGGAATTCGTTA+AGG - chr6_4:17826596-17826615 Msa0980020:intron 30.0%
GATTAAGGAAATGACAATAC+GGG - chr6_4:17826687-17826706 Msa0980020:intron 30.0%
! AGTTCCTACCATTCATATTT+TGG - chr6_4:17826900-17826919 Msa0980020:CDS 30.0%
TTCACCAAAATATGAATGGT+AGG + chr6_4:17826907-17826926 None:intergenic 30.0%
!!! ACCATTCATATTTTGGTGAA+TGG - chr6_4:17826907-17826926 Msa0980020:CDS 30.0%
ACCATTCACCAAAATATGAA+TGG + chr6_4:17826911-17826930 None:intergenic 30.0%
ACAAGAGGTTTAAGTAGTTT+AGG - chr6_4:17827007-17827026 Msa0980020:five_prime_UTR 30.0%
! TTTAAGTAGTTTAGGACTTG+TGG - chr6_4:17827015-17827034 Msa0980020:five_prime_UTR 30.0%
AGCTTTCAGCTTATTCGATA+AGG - chr6_4:17822755-17822774 Msa0980020:three_prime_UTR 35.0%
TTCAGCTTATTCGATAAGGA+TGG - chr6_4:17822759-17822778 Msa0980020:three_prime_UTR 35.0%
TCAAAGGAAAACCAAAACCT+AGG + chr6_4:17822970-17822989 None:intergenic 35.0%
CGATAGTGATAGGTAAATAC+TGG - chr6_4:17823290-17823309 Msa0980020:CDS 35.0%
! TTTTGCGAGAAATGCGTTTT+GGG + chr6_4:17823802-17823821 None:intergenic 35.0%
! TTTTTGCGAGAAATGCGTTT+TGG + chr6_4:17823803-17823822 None:intergenic 35.0%
AACGCATTTCTCGCAAAAAA+CGG - chr6_4:17823804-17823823 Msa0980020:intron 35.0%
! TATCCCGCTATAGCATTTTT+GGG - chr6_4:17824225-17824244 Msa0980020:intron 35.0%
!! TAGTAGTTAATAGCGGATAG+CGG + chr6_4:17824266-17824285 None:intergenic 35.0%
CTATCCGCTATTAACTACTA+TGG - chr6_4:17824266-17824285 Msa0980020:intron 35.0%
! ATGTCAGTCTTGTGTTAGTA+TGG - chr6_4:17824334-17824353 Msa0980020:intron 35.0%
ACACAACACTGGTAGTAATT+TGG + chr6_4:17824461-17824480 None:intergenic 35.0%
ATGATTCCAATGAGGAAGTA+AGG - chr6_4:17824612-17824631 Msa0980020:intron 35.0%
TGATTCCAATGAGGAAGTAA+GGG - chr6_4:17824613-17824632 Msa0980020:intron 35.0%
GAACTCTCACCTTGATATAA+TGG - chr6_4:17824644-17824663 Msa0980020:intron 35.0%
TAAACAAGCTCACAAACCAT+AGG + chr6_4:17824753-17824772 None:intergenic 35.0%
TAAACAAACTCACAAGCCAT+AGG + chr6_4:17825333-17825352 None:intergenic 35.0%
!! ATTATGGTTGGTTTACATCC+TGG + chr6_4:17826126-17826145 None:intergenic 35.0%
TATATATGGTGTGAACTTGC+AGG - chr6_4:17826240-17826259 Msa0980020:intron 35.0%
ATCAATGAAGTAGATGCTGA+TGG - chr6_4:17826342-17826361 Msa0980020:intron 35.0%
TCAATGAAGTAGATGCTGAT+GGG - chr6_4:17826343-17826362 Msa0980020:intron 35.0%
! GTTTTTGACAAGGATCAGAA+TGG - chr6_4:17826459-17826478 Msa0980020:intron 35.0%
GCAATGATTACTACAAAGCA+AGG + chr6_4:17826739-17826758 None:intergenic 35.0%
AAGAAGAAGAAAAGCGACGA+TGG - chr6_4:17822692-17822711 Msa0980020:three_prime_UTR 40.0%
TGATCAGATCTCTGAGTTCA+AGG - chr6_4:17822731-17822750 Msa0980020:three_prime_UTR 40.0%
TTATTCGATAAGGATGGCGA+TGG - chr6_4:17822765-17822784 Msa0980020:three_prime_UTR 40.0%
TTCGGATCGAATGCATAAAG+TGG + chr6_4:17823404-17823423 None:intergenic 40.0%
ACCTATGCAGTACAACGATT+CGG + chr6_4:17823422-17823441 None:intergenic 40.0%
TATCTCATAACGCTACGACA+TGG + chr6_4:17823584-17823603 None:intergenic 40.0%
!!! TTTTGGGGTGAGAAGATGAA+AGG + chr6_4:17823786-17823805 None:intergenic 40.0%
! TTTGCGAGAAATGCGTTTTG+GGG + chr6_4:17823801-17823820 None:intergenic 40.0%
! CTATCCCGCTATAGCATTTT+TGG - chr6_4:17824224-17824243 Msa0980020:intron 40.0%
! ATCCCGCTATAGCATTTTTG+GGG - chr6_4:17824226-17824245 Msa0980020:intron 40.0%
!! TACAAGTGTTGGTGCTACAA+AGG + chr6_4:17824374-17824393 None:intergenic 40.0%
ATCACATGTCGATGTCATGT+TGG + chr6_4:17824416-17824435 None:intergenic 40.0%
ACACTAACAATTCGGACCAA+AGG + chr6_4:17824520-17824539 None:intergenic 40.0%
CTTATCCCTTACTTCCTCAT+TGG + chr6_4:17824621-17824640 None:intergenic 40.0%
!! ATAGAGGTGCTACATCATAG+TGG + chr6_4:17824985-17825004 None:intergenic 40.0%
AACTCAGTGTTGTCGAATAG+AGG + chr6_4:17825001-17825020 None:intergenic 40.0%
TTGAAAAAGGGTTGCAGATG+TGG + chr6_4:17825270-17825289 None:intergenic 40.0%
AGTTGAATACACACTGACAC+TGG - chr6_4:17825720-17825739 Msa0980020:intron 40.0%
CTTCCAGCACTTACTAACAT+GGG + chr6_4:17825768-17825787 None:intergenic 40.0%
TACGTGGCTTATATACGAGA+AGG - chr6_4:17825828-17825847 Msa0980020:intron 40.0%
ACGTGGCTTATATACGAGAA+GGG - chr6_4:17825829-17825848 Msa0980020:intron 40.0%
AGCTTGATCTCATAACCTCA+AGG - chr6_4:17825968-17825987 Msa0980020:intron 40.0%
GCTTGATCTCATAACCTCAA+GGG - chr6_4:17825969-17825988 Msa0980020:intron 40.0%
CTTGATCTCATAACCTCAAG+GGG - chr6_4:17825970-17825989 Msa0980020:intron 40.0%
TATGTCGCTAATACACTAGC+AGG - chr6_4:17826064-17826083 Msa0980020:intron 40.0%
ATGTCGCTAATACACTAGCA+GGG - chr6_4:17826065-17826084 Msa0980020:intron 40.0%
CCTGGCTAGTAAGATGATTA+TGG + chr6_4:17826108-17826127 None:intergenic 40.0%
CCATAATCATCTTACTAGCC+AGG - chr6_4:17826105-17826124 Msa0980020:intron 40.0%
TGGAACTGTTATGCGTTCAT+TGG - chr6_4:17826284-17826303 Msa0980020:intron 40.0%
GGAACTGTTATGCGTTCATT+GGG - chr6_4:17826285-17826304 Msa0980020:intron 40.0%
GAACTGTTATGCGTTCATTG+GGG - chr6_4:17826286-17826305 Msa0980020:intron 40.0%
CCATGAGGTTAAGAAACTCA+GGG + chr6_4:17826386-17826405 None:intergenic 40.0%
AGTTTCTTAACCTCATGGCA+AGG - chr6_4:17826388-17826407 Msa0980020:intron 40.0%
!! CATCTCATCGACTTCTTCAT+CGG + chr6_4:17826541-17826560 None:intergenic 40.0%
GGAATTCGTTAAGGTCATGA+TGG - chr6_4:17826605-17826624 Msa0980020:intron 40.0%
TAAGGAAATGACAATACGGG+AGG - chr6_4:17826690-17826709 Msa0980020:intron 40.0%
TCTTCTTGAATGGTGACAAG+AGG - chr6_4:17826992-17827011 Msa0980020:five_prime_UTR 40.0%
TCCGAATCGTTGTACTGCAT+AGG - chr6_4:17823418-17823437 Msa0980020:intron 45.0%
AGTTAATAGCGGCGCTATAG+CGG - chr6_4:17823508-17823527 Msa0980020:intron 45.0%
CGACATGGCTTATTGCATAG+CGG + chr6_4:17823569-17823588 None:intergenic 45.0%
GTCGTAGCGTTATGAGATAG+CGG - chr6_4:17823585-17823604 Msa0980020:intron 45.0%
AAAACCGCTATGCAGTGTTG+CGG + chr6_4:17823622-17823641 None:intergenic 45.0%
GCGCCGTAAAGAATGAAAGA+AGG + chr6_4:17823764-17823783 None:intergenic 45.0%
! AAAGCAACGACGGCGTTTTA+CGG + chr6_4:17823850-17823869 None:intergenic 45.0%
GACCCCAAAAATGCTATAGC+GGG + chr6_4:17824231-17824250 None:intergenic 45.0%
CGACCCCAAAAATGCTATAG+CGG + chr6_4:17824232-17824251 None:intergenic 45.0%
!!! CGCTATAGCATTTTTGGGGT+CGG - chr6_4:17824230-17824249 Msa0980020:intron 45.0%
GTGTTAGTATGGACACTCTC+CGG - chr6_4:17824345-17824364 Msa0980020:intron 45.0%
GAGAAACATGACATGATGGC+AGG - chr6_4:17824788-17824807 Msa0980020:intron 45.0%
!! GGCAGGTGTTGAAAGATACT+AGG - chr6_4:17824805-17824824 Msa0980020:intron 45.0%
TACTAGTAGGGTGAGAGAAG+TGG - chr6_4:17825190-17825209 Msa0980020:intron 45.0%
ACTAGTAGGGTGAGAGAAGT+GGG - chr6_4:17825191-17825210 Msa0980020:intron 45.0%
CACTGTAGTCTGTAGCATAG+TGG + chr6_4:17825458-17825477 None:intergenic 45.0%
! CTTACTAACATGGGTGCTGT+TGG + chr6_4:17825759-17825778 None:intergenic 45.0%
CCTTCCAGCACTTACTAACA+TGG + chr6_4:17825769-17825788 None:intergenic 45.0%
!! CCATGTTAGTAAGTGCTGGA+AGG - chr6_4:17825766-17825785 Msa0980020:intron 45.0%
CGTAACAATGCCAACAGCAA+GGG + chr6_4:17825812-17825831 None:intergenic 45.0%
ACGTAACAATGCCAACAGCA+AGG + chr6_4:17825813-17825832 None:intergenic 45.0%
! TTGCTGTTGGCATTGTTACG+TGG - chr6_4:17825812-17825831 Msa0980020:intron 45.0%
AGAAGGGTGAGAGATGTAAG+TGG - chr6_4:17825845-17825864 Msa0980020:intron 45.0%
!! GTATGTGTGACTAGTCTGTG+TGG - chr6_4:17825929-17825948 Msa0980020:intron 45.0%
CATAACAGTTCCAAGCTCCT+TGG + chr6_4:17826277-17826296 None:intergenic 45.0%
GAAGTAGATGCTGATGGGAA+TGG - chr6_4:17826348-17826367 Msa0980020:intron 45.0%
CCCTGAGTTTCTTAACCTCA+TGG - chr6_4:17826383-17826402 Msa0980020:intron 45.0%
GCCATGAGGTTAAGAAACTC+AGG + chr6_4:17826387-17826406 None:intergenic 45.0%
! TGCTATTGGTTGTGGTCGAA+TGG - chr6_4:17826815-17826834 Msa0980020:intron 45.0%
!! TTGATTATTATATATATATA+TGG - chr6_4:17826226-17826245 Msa0980020:intron 5.0%
AGCGCCGCTATTAACTACTC+TGG + chr6_4:17823504-17823523 None:intergenic 50.0%
TGGCTTATTGCATAGCGGTC+CGG + chr6_4:17823564-17823583 None:intergenic 50.0%
! ATGAGATAGCGGCGCAATAG+CGG - chr6_4:17823596-17823615 Msa0980020:intron 50.0%
GAAATAGCGGTCATAGCGCT+AGG - chr6_4:17824199-17824218 Msa0980020:intron 50.0%
!! GTTGGTGCTACAAAGGTGTC+CGG + chr6_4:17824367-17824386 None:intergenic 50.0%
CAGACACACAGACACAACAC+TGG + chr6_4:17824472-17824491 None:intergenic 50.0%
CTGTGTCAGTGCTTCATAGC+CGG - chr6_4:17824489-17824508 Msa0980020:intron 50.0%
GCACCCATGTTAGTAAGTGC+TGG - chr6_4:17825762-17825781 Msa0980020:intron 50.0%
GTGCTGGAAGGAGTAACACT+TGG - chr6_4:17825778-17825797 Msa0980020:intron 50.0%
AGGGTGAGAGATGTAAGTGG+TGG - chr6_4:17825848-17825867 Msa0980020:intron 50.0%
! GAGAGATGTAAGTGGTGGAG+AGG - chr6_4:17825853-17825872 Msa0980020:intron 50.0%
TCTCATAACCTCAAGGGGCA+TGG - chr6_4:17825975-17825994 Msa0980020:intron 50.0%
TATCTGAACCATGCCCCTTG+AGG + chr6_4:17825986-17826005 None:intergenic 50.0%
TGCAGGTTGCATCACAACCA+AGG - chr6_4:17826257-17826276 Msa0980020:intron 50.0%
TGCATCACAACCAAGGAGCT+TGG - chr6_4:17826264-17826283 Msa0980020:intron 50.0%
ATTGGGGCAAAACCCAACTG+AGG - chr6_4:17826302-17826321 Msa0980020:intron 50.0%
CCTTCATCTTCCTTGCCATG+AGG + chr6_4:17826401-17826420 None:intergenic 50.0%
CCTCATGGCAAGGAAGATGA+AGG - chr6_4:17826398-17826417 Msa0980020:intron 50.0%
!! AGGAGCTGAAAGAGGCGTTT+CGG - chr6_4:17826436-17826455 Msa0980020:intron 50.0%
!!! GGCGTTTCGGGTTTTTGACA+AGG - chr6_4:17826449-17826468 Msa0980020:intron 50.0%
CGTCATGTGATGACCAACCT+TGG - chr6_4:17826504-17826523 Msa0980020:intron 50.0%
AGTCGATGAGATGATCCGTG+AGG - chr6_4:17826548-17826567 Msa0980020:intron 50.0%
ATCCGTGAGGCTGATGTTGA+TGG - chr6_4:17826561-17826580 Msa0980020:intron 50.0%
CACCATCAACATCAGCCTCA+CGG + chr6_4:17826566-17826585 None:intergenic 50.0%
!! GAGGCTGATGTTGATGGTGA+TGG - chr6_4:17826567-17826586 Msa0980020:intron 50.0%
GGAAATGACAATACGGGAGG+AGG - chr6_4:17826693-17826712 Msa0980020:intron 50.0%
GTGGTAAGTCCTGCTGCTAT+TGG - chr6_4:17826801-17826820 Msa0980020:intron 50.0%
! AGTCCTGCTGCTATTGGTTG+TGG - chr6_4:17826807-17826826 Msa0980020:intron 50.0%
TTCATAGCCGGACACGCCTT+TGG - chr6_4:17824501-17824520 Msa0980020:intron 55.0%
! ATTCGGACCAAAGGCGTGTC+CGG + chr6_4:17824511-17824530 None:intergenic 55.0%
! GGATGCGTTACCCTTGCTGT+TGG - chr6_4:17825799-17825818 Msa0980020:intron 55.0%
CCTGAAGCTCTGCCTCAGTT+GGG + chr6_4:17826317-17826336 None:intergenic 55.0%
TCCTGAAGCTCTGCCTCAGT+TGG + chr6_4:17826318-17826337 None:intergenic 55.0%
TTTCAGCTCCTCCTCGGAGT+CGG + chr6_4:17826427-17826446 None:intergenic 55.0%
!! GGAGCTGAAAGAGGCGTTTC+GGG - chr6_4:17826437-17826456 Msa0980020:intron 55.0%
GGTGAGCTTCTCACCAAGGT+TGG + chr6_4:17826520-17826539 None:intergenic 55.0%
CATCGGTGAGCTTCTCACCA+AGG + chr6_4:17826524-17826543 None:intergenic 55.0%
CGACCACAACCAATAGCAGC+AGG + chr6_4:17826813-17826832 None:intergenic 55.0%
GGCGCTATAGCGGCCAATAG+CGG - chr6_4:17823518-17823537 Msa0980020:intron 60.0%
CCCAACTGAGGCAGAGCTTC+AGG - chr6_4:17826314-17826333 Msa0980020:intron 60.0%
!! GATGAAGGACACCGACTCCG+AGG - chr6_4:17826413-17826432 Msa0980020:intron 60.0%
CTCCGAGGAGGAGCTGAAAG+AGG - chr6_4:17826428-17826447 Msa0980020:intron 60.0%
CGCCTCTTTCAGCTCCTCCT+CGG + chr6_4:17826433-17826452 None:intergenic 60.0%
GCGGCCGCAACACTGCATAG+CGG - chr6_4:17823615-17823634 Msa0980020:intron 65.0%
! TAGCGGATAGCGGCGCGTAG+CGG + chr6_4:17824256-17824275 None:intergenic 65.0%
!! GAAGGACACCGACTCCGAGG+AGG - chr6_4:17826416-17826435 Msa0980020:intron 65.0%
AGCGGCCAATAGCGGCCGCG+CGG - chr6_4:17823526-17823545 Msa0980020:intron 75.0%
CCAATAGCGGCCGCGCGGTG+CGG - chr6_4:17823531-17823550 Msa0980020:intron 75.0%
! CCGCACCGCGCGGCCGCTAT+TGG + chr6_4:17823534-17823553 None:intergenic 80.0%
! CGGTACCGCACCGCACCGCG+CGG + chr6_4:17823544-17823563 None:intergenic 80.0%
! CGCGCGGTGCGGTGCGGTAC+CGG - chr6_4:17823542-17823561 Msa0980020:intron 80.0%
! AGCGGCCGCGCGGTGCGGTG+CGG - chr6_4:17823536-17823555 Msa0980020:intron 85.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 17822601 17827076 17822601 ID=Msa0980020;Name=Msa0980020
chr6_4 mRNA 17822601 17827076 17822601 ID=Msa0980020-mRNA-1;Parent=Msa0980020;Name=Msa0980020-mRNA-1;_AED=0.11;_eAED=0.11;_QI=110|1|1|1|1|1|2|441|149
chr6_4 exon 17822601 17823415 17822601 ID=Msa0980020-mRNA-1:exon:5504;Parent=Msa0980020-mRNA-1
chr6_4 exon 17826891 17827076 17826891 ID=Msa0980020-mRNA-1:exon:5503;Parent=Msa0980020-mRNA-1
chr6_4 five_prime_UTR 17826967 17827076 17826967 ID=Msa0980020-mRNA-1:five_prime_utr;Parent=Msa0980020-mRNA-1
chr6_4 CDS 17826891 17826966 17826891 ID=Msa0980020-mRNA-1:cds;Parent=Msa0980020-mRNA-1
chr6_4 CDS 17823042 17823415 17823042 ID=Msa0980020-mRNA-1:cds;Parent=Msa0980020-mRNA-1
chr6_4 three_prime_UTR 17822601 17823041 17822601 ID=Msa0980020-mRNA-1:three_prime_utr;Parent=Msa0980020-mRNA-1
Gene Sequence

>Msa0980020

ATGGCAGATCAACTCACAGATGATCAGATCTCTGAGTTCAAGGAAGCTTTCAGCTTATTCGATAAGGATGGCGATGGTTGCATCACAACCAAGGAGCTTGGAACTGTTATGCGTTCATTGGGGCAAAACCCAACTGAGGCAGAGCTTCAGGACATGATCAATGAAGTAGATGCTGATGGGAATGGTACTATTGACTTCCCTGAGTTTCTTAACCTCATGGCAAGGAAGATGAAGGACACCGACTCCGAGGAGGAGCTGAAAGAGGCGTTTCGGGTTTTTGACAAGGATCAGAATGGTTTCATTTCTGCTGCTGAGCTTCGTCATGTGATGACCAACCTTGGTGAGAAGCTCACCGATGAAGAAGTCGATGAGATGATCCGTGAGGCTGATGTTGATGGTGATGGTCAAATAAACTATGAGGAATTCGTTAAGGTCATGATGGCTAAATGA

Protein sequence

>Msa0980020

MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK*